Pub Date : 2021-06-01Epub Date: 2020-12-14DOI: 10.3114/fuse.2021.07.06
M A Castellano, C D Crabtree, D Mitchell, R A Healy
The hypogeous, sequestrate ascomycete genus Elaphomyces is one of the oldest known truffle-like genera. Elaphomyces has a long history of consumption by animals in Europe and was formally described by Nees von Esenbeck in 1820 from Europe. Until recently most Elaphomyces specimens in North America were assigned names of European taxa due to lack of specialists working on this group and difficulty of using pre-modern species descriptions. It has recently been discovered that North America has a rich diversity of Elaphomyces species far beyond the four Elaphomyces species described from North America prior to 2012. We describe eight new Elaphomyces species (E. dalemurphyi, E. dunlapii, E. holtsii, E. lougehrigii, E. miketroutii, E. roodyi, E. stevemilleri and E. wazhazhensis) of eastern North America that were collected in habitats from Quebec, Canada south to Florida, USA, west to Texas and Iowa. The ranges of these species vary and with continued sampling may prove to be larger than we have established. Castellano has studied authentic material of all European Elaphomyces species published through 2016 and it is interesting to note that many Elaphomyces species from eastern North America have morphological similarities but with distinct morphological differences to a number of European Elaphomyces species. Citation: Castellano MA, Crabtree CD, Mitchell D, Healy RA (2020). Eight new Elaphomyces species (Elaphomycetaceae, Eurotiales, Ascomycota) from eastern North America. Fungal Systematics and Evolution7: 113-131. doi: 10.3114/fuse.2021.07.06.
{"title":"Eight new <i>Elaphomyces</i> species (<i>Elaphomycetaceae, Eurotiales, Ascomycota</i>) from eastern North America.","authors":"M A Castellano, C D Crabtree, D Mitchell, R A Healy","doi":"10.3114/fuse.2021.07.06","DOIUrl":"https://doi.org/10.3114/fuse.2021.07.06","url":null,"abstract":"<p><p>The hypogeous, sequestrate ascomycete genus <i>Elaphomyces</i> is one of the oldest known truffle-like genera. <i>Elaphomyces</i> has a long history of consumption by animals in Europe and was formally described by Nees von Esenbeck in 1820 from Europe. Until recently most <i>Elaphomyces</i> specimens in North America were assigned names of European taxa due to lack of specialists working on this group and difficulty of using pre-modern species descriptions. It has recently been discovered that North America has a rich diversity of <i>Elaphomyces</i> species far beyond the four <i>Elaphomyces</i> species described from North America prior to 2012. We describe eight new <i>Elaphomyces</i> species (<i>E. dalemurphyi, E. dunlapii, E. holtsii</i>, <i>E. lougehrigii</i>, <i>E. miketroutii</i>, <i>E. roody</i>i, <i>E. stevemilleri</i> and <i>E. wazhazhensis</i>) of eastern North America that were collected in habitats from Quebec, Canada south to Florida, USA, west to Texas and Iowa. The ranges of these species vary and with continued sampling may prove to be larger than we have established. Castellano has studied authentic material of all European <i>Elaphomyces</i> species published through 2016 and it is interesting to note that many <i>Elaphomyces</i> species from eastern North America have morphological similarities but with distinct morphological differences to a number of European <i>Elaphomyces</i> species. <b>Citation:</b> Castellano MA, Crabtree CD, Mitchell D, Healy RA (2020). Eight new <i>Elaphomyces</i> species (<i>Elaphomycetaceae</i>, <i>Eurotiales</i>, <i>Ascomycota</i>) from eastern North America. <i>Fungal Systematics and Evolution</i> <b>7:</b> 113-131. doi: 10.3114/fuse.2021.07.06.</p>","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"7 ","pages":"113-131"},"PeriodicalIF":0.0,"publicationDate":"2021-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/21/b4/fuse-2021-7-6.PMC8166207.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39011758","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-01-01DOI: 10.3114/fuse.2021.08.06_supp1
N. Davoodian
Fig. S1. Overview Phylogram from Bayesian analysis showing relationship between Hysterangiales, some Phallales and outgroups (OG). Node A indicates Phallogastrineae subord. nov.; node B indicates Hysterangineae subord. nov. Maximum likelihood (ML) bootstrap values / Bayesian posterior probabilities (bpp) are shown at the nodes. Where bpp ≥ 0.95 and ML bootstrap ≥ 70 %, branches are thickened. Type species indicated by a blue asterisk *. The asterisk in parentheses (*) denotes the currently accepted genus for Protubera canescens, Ileodictyon. Countries and States indicated with same acronyms as Fig. 3. Terminals representing new DNA sequences generated for this study are in bold.
{"title":"Figure S1","authors":"N. Davoodian","doi":"10.3114/fuse.2021.08.06_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.08.06_supp1","url":null,"abstract":"Fig. S1. Overview Phylogram from Bayesian analysis showing relationship between Hysterangiales, some Phallales and outgroups (OG). Node A indicates Phallogastrineae subord. nov.; node B indicates Hysterangineae subord. nov. Maximum likelihood (ML) bootstrap values / Bayesian posterior probabilities (bpp) are shown at the nodes. Where bpp ≥ 0.95 and ML bootstrap ≥ 70 %, branches are thickened. Type species indicated by a blue asterisk *. The asterisk in parentheses (*) denotes the currently accepted genus for Protubera canescens, Ileodictyon. Countries and States indicated with same acronyms as Fig. 3. Terminals representing new DNA sequences generated for this study are in bold.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"82327371","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-01-01DOI: 10.3114/fuse.2021.07.07_supp1
E. De Crop
Figure S1. Overview map of the biogeographical regions used for Table 1. Biogeographic regions are based on biogeographic realms (https://ecoregions2017.appspot.com/), with three major differences: Western Palearctic (Western part of the Palearctic realm), Asia (Eastern part of the Palearctic realm combined with the Indo-Malay realm), and Australasia (Australasian realm combined with the Oceanian realm). The Palearctic realm was spilt into Western Palearctic and Eastern Palearctic, Eastern Palearctic and the Indo-Malay realm form together the Asia region, and the Australasian realm is combined with the Oceania realm to form the Australasian region.Table S1. List of described Lactifluus species, together with the year of description, taxonomical classification (subgenus, section), the indication of how this taxonomical position was defined, the source(s) of this classification, and notes.Table S2. Extra information on the preliminary study of metabarcoding data of the genus Lactifluus, retrieved from the GlobalFungi website.Table S3. Overview of the results of the preliminary study of metabarcoding data of the genus Lactifluus, retrieved from the GlobalFungi website. Due to the generally shorter length and lower quality of environmental sequence data, the numbers in the table are to be considered an estimate.Table S4. List of the putative new species found in the environmental sequences. References of studies cited are given in S3.
{"title":"Fig. S1 & Tables S1-S4","authors":"E. De Crop","doi":"10.3114/fuse.2021.07.07_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.07.07_supp1","url":null,"abstract":"Figure S1. Overview map of the biogeographical regions used for Table 1. Biogeographic regions are based on biogeographic realms (https://ecoregions2017.appspot.com/), with three major differences: Western Palearctic (Western part of the Palearctic realm), Asia (Eastern part of the Palearctic realm combined with the Indo-Malay realm), and Australasia (Australasian realm combined with the Oceanian realm). The Palearctic realm was spilt into Western Palearctic and Eastern Palearctic, Eastern Palearctic and the Indo-Malay realm form together the Asia region, and the Australasian realm is combined with the Oceania realm to form the Australasian region.Table S1. List of described Lactifluus species, together with the year of description, taxonomical classification (subgenus, section), the indication of how this taxonomical position was defined, the source(s) of this classification, and notes.Table S2. Extra information on the preliminary study of metabarcoding data of the genus Lactifluus, retrieved from the GlobalFungi website.Table S3. Overview of the results of the preliminary study of metabarcoding data of the genus Lactifluus, retrieved from the GlobalFungi website. Due to the generally shorter length and lower quality of environmental sequence data, the numbers in the table are to be considered an estimate.Table S4. List of the putative new species found in the environmental sequences. References of studies cited are given in S3.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"66 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"73085692","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-01-01DOI: 10.3114/fuse.2021.07.09_supp1
J. Mack
Figure S1. Mean conidial dimensions (with error bars representing standard error) for all herbarium specimens and cultures examined, with the holotype of H. fragiforme represented by orange bars and the holotype of H. callorioides represented by green bars.Figure S2. Lectotype of H. fragiformis (A, C, E) and holotype of H. callorioides (B, D, F). A, B. Rehydrated sporodochia. C−F. Conidial chains. Scale bars: A, B = 500 μm. C−F = 10 μm.Figure S3. Conidia and conidial chains. A. Oosporidium sp. (DAOM 970823) identified using DNA sequencing. B. Holotype of Sphaerocolla aurantiaca (H). Both have similar conidial morphology and dimensions, suggesting that S. aurantiaca may be conspecific with Oosporidium margaritiferum. Scale bar = 10 μm. Figure S4. Nuclear staining of hyphae of DAOMC 251988, showing dikaryotic, binucleate hyphae, A, using near-UV light showing the stained nuclei and B with regular light. Scale bar = 20 μm. Table S1. Species, geographical location, host and herbaria for known type specimens of Hormomyces species.
{"title":"Figs S1-S4 & Table S1","authors":"J. Mack","doi":"10.3114/fuse.2021.07.09_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.07.09_supp1","url":null,"abstract":"Figure S1. Mean conidial dimensions (with error bars representing standard error) for all herbarium specimens and cultures examined, with the holotype of H. fragiforme represented by orange bars and the holotype of H. callorioides represented by green bars.Figure S2. Lectotype of H. fragiformis (A, C, E) and holotype of H. callorioides (B, D, F). A, B. Rehydrated sporodochia. C−F. Conidial chains. Scale bars: A, B = 500 μm. C−F = 10 μm.Figure S3. Conidia and conidial chains. A. Oosporidium sp. (DAOM 970823) identified using DNA sequencing. B. Holotype of Sphaerocolla aurantiaca (H). Both have similar conidial morphology and dimensions, suggesting that S. aurantiaca may be conspecific with Oosporidium margaritiferum. Scale bar = 10 μm. Figure S4. Nuclear staining of hyphae of DAOMC 251988, showing dikaryotic, binucleate hyphae, A, using near-UV light showing the stained nuclei and B with regular light. Scale bar = 20 μm. Table S1. Species, geographical location, host and herbaria for known type specimens of Hormomyces species.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"28 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88013398","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-01-01DOI: 10.3114/fuse.2021.07.10_supp1
Á. Pintos
Table S1. GenBank accession numbers and isolates employed in the phylogenetic analyses. Names in bold represent samples sequenced for the present study.
表S1。用于系统发育分析的GenBank加入号和分离株。黑体名称代表本研究中测序的样本。
{"title":"Table S1","authors":"Á. Pintos","doi":"10.3114/fuse.2021.07.10_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.07.10_supp1","url":null,"abstract":"Table S1. GenBank accession numbers and isolates employed in the phylogenetic analyses. Names in bold represent samples sequenced for the present study.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"138 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"78029873","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-01-01DOI: 10.3114/fuse.2021.08.14_supp1
C. Walker
Fig. S1. Rhizophagus intraradices: culturing history of the type and successful ex-type culture attempts (ATT 4) and a new isolate (ATT 1102) from the type location established approx. 30 years later. Both pot cultures (PC) and root organ cultures (ROC) are shown with dates of establishment and voucher numbers for samples that yielded specimens for preservation in herbaria. Sun bags are item B7062, Sigma Aldrich (https://www.sigmaaldrich.com). Location of cultures: Forestry Commission Northern Research Station or other localities in UK; Université catholique de Louvain (UCL); Ludwig Maximilian University of Munich (LMU). Gel refers to a small portion of substrate from a parent ROC, with a single spore, several spores, or root fragments (usually with attached mycelium).Fig. S2. Phylogenetic maximum likelihood phylogenetic tree of Rhizophagus species and isolates characterised for the SSU-ITS-LSU rDNA region, with Sclerocystis as outgroup. Bootstrap (BS) values below 60 % and BS values of terminal sister relations are not shown. “Rhizoglomus venetianum” (= R. irregularis) sequences are marked in red, sequence variants characterised in a Rhizophagus irregularis genome project are marked in blue. Sequences of Rhizophagus intraradices cultures derived from the ex-type culture FL 208, including the epitype (voucher W 5719 from MUCL 52327 = ATT 4-83), are shown in green and sequences of the new isolate collected from the type locality (MUCL 49410 = ATT 1102-12) in brown.Table S1. Rhizophagus intraradices: lengths and widths (µm) of extra- and intraradical spores from two strains, ATT 4 and ATT 1102 spores with inferential statistics (number of spores observed (n), minimum value (Min), first quartile of the data (Q1), median, third quartile of data (Q3), maximum value (Max), mean, standard deviation (SD) and % coefficient of variation (CV %)). Table S2. Rhizophagus intraradices: spore colours from two strains (ATT 4 – type and ex-type) and ATT 1102 (new culture from type locality) from pot cultures (PC) and root organ cultures (ROC). Where possible, colours were matched with charts from Royal Botanic Garden Edinburgh, Munsell, or Methuen Handbook of Colour.
图S1。根食菌根内菌:该菌种的培养历史和成功的前菌种培养尝试(ATT 4)以及从大约建立的菌种位置获得的新分离物(ATT 1102)。30年后。盆栽培养(PC)和根器官培养(ROC)都显示了建立日期和样品的凭证号码,这些样品产生了保存在植物标本室的标本。太阳袋是项目B7062,西格玛奥德里奇(https://www.sigmaaldrich.com)。栽培地点:英国林业委员会北部研究站或其他地方;鲁汶天主教大学;慕尼黑大学(LMU)。凝胶是指来自母体ROC的一小部分基质,含有单个孢子、多个孢子或根碎片(通常带有附着的菌丝体)。S2。以SSU-ITS-LSU rDNA区域为特征的根噬菌物种和分离物的系统发育最大似然树,以硬囊菌为外群。60%以下的Bootstrap (BS)值和终端姊妹关系的BS值未显示。“Rhizoglomus venetianum”(= R. irregularis)序列用红色标记,在Rhizophagus irregularis基因组计划中表征的序列变体用蓝色标记。来自前型培养物FL 208的根噬菌根内培养物序列,包括表型(来自MUCL 52327 = ATT 4-83的W 5719)的序列以绿色表示,而来自类型地区(MUCL 49410 = ATT 1102-12)的新分离物序列以棕色表示。表S1。根食菌根内孢子:两株ATT 4和ATT 1102的根外孢子和根内孢子的长度和宽度(µm),具有推断统计(观察到的孢子数(n)、最小值(Min)、数据的第一个四分位数(Q1)、中位数、数据的第三个四分位数(Q3)、最大值(Max)、平均值、标准差(SD)和变异系数% (CV %))。表S2。根食菌:盆栽(PC)和根器官培养(ROC)的两株(ATT 4型和前型)和ATT 1102(类型地新培养)的孢子颜色。在可能的情况下,颜色与爱丁堡皇家植物园、蒙塞尔或梅休恩色彩手册中的图表相匹配。
{"title":"Figs S1-S3 & Tables S1-S2","authors":"C. Walker","doi":"10.3114/fuse.2021.08.14_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.08.14_supp1","url":null,"abstract":"Fig. S1. Rhizophagus intraradices: culturing history of the type and successful ex-type culture attempts (ATT 4) and a new isolate (ATT 1102) from the type location established approx. 30 years later. Both pot cultures (PC) and root organ cultures (ROC) are shown with dates of establishment and voucher numbers for samples that yielded specimens for preservation in herbaria. Sun bags are item B7062, Sigma Aldrich (https://www.sigmaaldrich.com). Location of cultures: Forestry Commission Northern Research Station or other localities in UK; Université catholique de Louvain (UCL); Ludwig Maximilian University of Munich (LMU). Gel refers to a small portion of substrate from a parent ROC, with a single spore, several spores, or root fragments (usually with attached mycelium).Fig. S2. Phylogenetic maximum likelihood phylogenetic tree of Rhizophagus species and isolates characterised for the SSU-ITS-LSU rDNA region, with Sclerocystis as outgroup. Bootstrap (BS) values below 60 % and BS values of terminal sister relations are not shown. “Rhizoglomus venetianum” (= R. irregularis) sequences are marked in red, sequence variants characterised in a Rhizophagus irregularis genome project are marked in blue. Sequences of Rhizophagus intraradices cultures derived from the ex-type culture FL 208, including the epitype (voucher W 5719 from MUCL 52327 = ATT 4-83), are shown in green and sequences of the new isolate collected from the type locality (MUCL 49410 = ATT 1102-12) in brown.Table S1. Rhizophagus intraradices: lengths and widths (µm) of extra- and intraradical spores from two strains, ATT 4 and ATT 1102 spores with inferential statistics (number of spores observed (n), minimum value (Min), first quartile of the data (Q1), median, third quartile of data (Q3), maximum value (Max), mean, standard deviation (SD) and % coefficient of variation (CV %)). Table S2. Rhizophagus intraradices: spore colours from two strains (ATT 4 – type and ex-type) and ATT 1102 (new culture from type locality) from pot cultures (PC) and root organ cultures (ROC). Where possible, colours were matched with charts from Royal Botanic Garden Edinburgh, Munsell, or Methuen Handbook of Colour.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90098386","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-01-01DOI: 10.3114/fuse.2021.08.08_supp1
E. Karlsen-Ayala
Fig. S1. Maximum likelihood tree based on ITS dataset. Branch support values >75 % and Bayesian posterior probabilities > 0.90 are indicated. Symbols with closed circles represent gasteroid taxa, symbols with half circles represent secotoid taxa, and all other taxa are agaricoid. Limacella glioderma was used as an outgroup.Fig. S2. Maximum likelihood tree based on LSU dataset. Branch support values >75 % and Bayesian posterior probabilities > 0.90 are indicated. Symbols with closed circles represent gasteroid taxa, symbols with half circles represent secotoid taxa, and all other taxa are agaricoid. Limacella glioderma was used as an outgroup. Fig. S3. Maximum likelihood tree based on concatenated LSU, rpb2, and tef1 dataset with ambiguously aligned regions excluded. Branch bootstrap support values >75 % and Bayesian posterior probabilities > 0.90 are indicated. Limacella delicata, Limacella glioderma and Limacella guttata were used as an outgroup.
{"title":"Figs S1-S3","authors":"E. Karlsen-Ayala","doi":"10.3114/fuse.2021.08.08_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.08.08_supp1","url":null,"abstract":"Fig. S1. Maximum likelihood tree based on ITS dataset. Branch support values >75 % and Bayesian posterior probabilities > 0.90 are indicated. Symbols with closed circles represent gasteroid taxa, symbols with half circles represent secotoid taxa, and all other taxa are agaricoid. Limacella glioderma was used as an outgroup.Fig. S2. Maximum likelihood tree based on LSU dataset. Branch support values >75 % and Bayesian posterior probabilities > 0.90 are indicated. Symbols with closed circles represent gasteroid taxa, symbols with half circles represent secotoid taxa, and all other taxa are agaricoid. Limacella glioderma was used as an outgroup. Fig. S3. Maximum likelihood tree based on concatenated LSU, rpb2, and tef1 dataset with ambiguously aligned regions excluded. Branch bootstrap support values >75 % and Bayesian posterior probabilities > 0.90 are indicated. Limacella delicata, Limacella glioderma and Limacella guttata were used as an outgroup.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"33 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"81157484","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2021-01-01DOI: 10.3114/fuse.2021.08.12_supp1
R. Chang
Fig. S1. Phylogram obtained from ML analyses of the partial BT and EF gene sequences of the O. clavatum species complex. Sequences obtained in this study are printed in bold type. Maximum-likelihood bootstrap support values (1 000 replicates) above 70 % are indicated at the nodes. Bayesian inference posterior probabilities (above 0.9) are indicated by bold lines at the relevant branches. T = ex-type cultures. Fig. S2. Phylogram obtained from ML analyses of the ITS region and the partial BT gene of the O. ips species complex. Sequences obtained in this study are printed in bold type. Maximum-likelihood bootstrap support values (1 000 replicates) above 70 % are indicated at the nodes. The Bayesian inference posterior probabilities (above 0.9) are indicated by bold lines at the relevant branches. T = ex-type cultures. Fig. S3. Phylogram obtained from ML analyses of the ITS region, and the partial BT and CAL gene sequences of the Sporothrix gossypina species complex. Sequences obtained in this study are printed in bold type. Maximum-likelihood bootstrap support values (1 000 replicates) above 70 % are indicated at the nodes. Bayesian inference posterior probabilities (above 0.9) are indicated by bold lines at the relevant branches. T = ex-type cultures. Fig. S4. Phylogram obtained from ML analyses of the ITS region, and the partial BT and EF gene sequences of Endoconidiophra. Sequences obtained in this study are printed in bold type. Maximum-likelihood bootstrap support values (1 000 replicates) above 70 % are indicated at the nodes. Bayesian inference posterior probabilities (above 0.9) are indicated by bold lines at the relevant branches. T = ex-type cultures.
{"title":"Figs S1-S4","authors":"R. Chang","doi":"10.3114/fuse.2021.08.12_supp1","DOIUrl":"https://doi.org/10.3114/fuse.2021.08.12_supp1","url":null,"abstract":"Fig. S1. Phylogram obtained from ML analyses of the partial BT and EF gene sequences of the O. clavatum species complex. Sequences obtained in this study are printed in bold type. Maximum-likelihood bootstrap support values (1 000 replicates) above 70 % are indicated at the nodes. Bayesian inference posterior probabilities (above 0.9) are indicated by bold lines at the relevant branches. T = ex-type cultures. Fig. S2. Phylogram obtained from ML analyses of the ITS region and the partial BT gene of the O. ips species complex. Sequences obtained in this study are printed in bold type. Maximum-likelihood bootstrap support values (1 000 replicates) above 70 % are indicated at the nodes. The Bayesian inference posterior probabilities (above 0.9) are indicated by bold lines at the relevant branches. T = ex-type cultures. Fig. S3. Phylogram obtained from ML analyses of the ITS region, and the partial BT and CAL gene sequences of the Sporothrix gossypina species complex. Sequences obtained in this study are printed in bold type. Maximum-likelihood bootstrap support values (1 000 replicates) above 70 % are indicated at the nodes. Bayesian inference posterior probabilities (above 0.9) are indicated by bold lines at the relevant branches. T = ex-type cultures. Fig. S4. Phylogram obtained from ML analyses of the ITS region, and the partial BT and EF gene sequences of Endoconidiophra. Sequences obtained in this study are printed in bold type. Maximum-likelihood bootstrap support values (1 000 replicates) above 70 % are indicated at the nodes. Bayesian inference posterior probabilities (above 0.9) are indicated by bold lines at the relevant branches. T = ex-type cultures.","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"208 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72541864","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-12-01Epub Date: 2020-04-16DOI: 10.3114/fuse.2020.06.07
A T Buaya, M Thines
Holocarpic oomycetes convert their entire cytoplasm into zoospores and thus do not form dedicated sporangia or hyphal compartments for asexual reproduction. The majority of holocarpic oomycetes are obligate parasites and parasitoids of a diverse suite of organisms, among them green and red algae, brown seaweeds, diatoms, fungi, oomycetes and invertebrates. Most of them are found among the early diverging oomycetes or the Peronosporomycetes, and some in the early-diverging Saprolegniomycetes (Leptomitales). The obligate parasitism renders it difficult to study some of these organisms. Only a few members of the genus Haliphthoross. l. have been cultured without their hosts, and of the parasitoid Leptomitales, some transient cultures have been established, which are difficult to maintain. Here, the cultivation of a new holocarpic oomycete genus of the Leptomitales, Bolbea, is presented. Bolbea is parasitic to ostracods, is readily cultivable on malt extract agar, and upon contact with water converts its cytoplasm into zoospores. Its morphology and phylogenetic relationships are reported. Due to the ease of cultivation and the ready triggering of zoospore development, similar to some lagenidiaceous oomycetes, the species could be a promising model to study sporulation processes in detail.
全新世卵菌将其整个细胞质转化为游动孢子,因此不会形成专门的孢子囊或菌丝室进行无性繁殖。大多数全新世卵菌是多种生物的专性寄生虫和拟寄生虫,其中包括绿藻和红藻、棕色海藻、硅藻、真菌、卵菌和无脊椎动物。它们大多存在于早期分化的卵菌或卵孢菌中,也有一些存在于早期分化的腐菌(Leptomitales)中。专性寄生使得研究这些生物变得困难。只有少数Haliphthoros s. l.属的成员在没有寄主的情况下进行了培养,而拟寄生物Leptomitales则建立了一些难以维持的瞬时培养。在这里,一个新的全新世卵菌属的培养Leptomitales, Bolbea,是提出。Bolbea寄生于介形虫,很容易在麦芽提取物琼脂上培养,与水接触后将其细胞质转化为游动孢子。报道了其形态和系统发育关系。由于易于培养和易于触发游动孢子的发育,与一些lagenidiacous卵菌类似,该物种可能是详细研究孢子形成过程的一个有希望的模型。
{"title":"<i>Bolbea parasitica</i> <i>gen. et sp. nov</i>., a cultivable holocarpic parasitoid of the early-diverging <i>Saprolegniomycetes</i>.","authors":"A T Buaya, M Thines","doi":"10.3114/fuse.2020.06.07","DOIUrl":"https://doi.org/10.3114/fuse.2020.06.07","url":null,"abstract":"<p><p>Holocarpic oomycetes convert their entire cytoplasm into zoospores and thus do not form dedicated sporangia or hyphal compartments for asexual reproduction. The majority of holocarpic oomycetes are obligate parasites and parasitoids of a diverse suite of organisms, among them green and red algae, brown seaweeds, diatoms, fungi, oomycetes and invertebrates. Most of them are found among the early diverging oomycetes or the <i>Peronosporomycetes</i>, and some in the early-diverging <i>Saprolegniomycetes</i> (<i>Leptomitales</i>). The obligate parasitism renders it difficult to study some of these organisms. Only a few members of the genus <i>Haliphthoros</i> <i>s. l.</i> have been cultured without their hosts, and of the parasitoid <i>Leptomitales</i>, some transient cultures have been established, which are difficult to maintain. Here, the cultivation of a new holocarpic oomycete genus of the <i>Leptomitales</i>, <i>Bolbea</i>, is presented. <i>Bolbea</i> is parasitic to ostracods, is readily cultivable on malt extract agar, and upon contact with water converts its cytoplasm into zoospores. Its morphology and phylogenetic relationships are reported. Due to the ease of cultivation and the ready triggering of zoospore development, similar to some lagenidiaceous oomycetes, the species could be a promising model to study sporulation processes in detail.</p>","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"6 ","pages":"129-137"},"PeriodicalIF":0.0,"publicationDate":"2020-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3114/fuse.2020.06.07","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38358625","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2020-12-01Epub Date: 2020-08-04DOI: 10.3114/fuse.2020.06.16
M Procter, W J Nel, S Marincowitz, P W Crous, M J Wingfield
Species of Raffaelea (Ophiostomatales: Ascomycota) are obligate symbionts of ambrosia beetles, some of which pose a substantial threat to forest trees. Leucaena leucocephala is a small mimosoid tree species that is considered as an invasive weed in most of its introduced range globally. During a field expedition on the French island of Réunion, dying L. leucocephala trees were observed. Samples were taken from these trees and isolations made from symptomatic wood tissues that included beetle tunnels, but in the absence of the beetles themselves. Multiple isolates of a fungus resembling a Raffaelea species were obtained from the discoloured wood associated with the beetle tunnels. To determine their identity, microscopic examination was performed and DNA sequences for three gene regions (ITS, LSU, TUB) were obtained. Phylogenetic analyses based on these gene regions revealed that the isolates represent a new species of Raffaelea, described here as R. borbonicasp. nov. A pathogenicity test was conducted with the fungus, which was shown to cause lesions on the inoculated seedlings, but with a low level of aggressiveness.
{"title":"A new species of <i>Raffaelea</i> from beetle-infested <i>Leucaena leucocephala</i>.","authors":"M Procter, W J Nel, S Marincowitz, P W Crous, M J Wingfield","doi":"10.3114/fuse.2020.06.16","DOIUrl":"https://doi.org/10.3114/fuse.2020.06.16","url":null,"abstract":"<p><p>Species of <i>Raffaelea</i> (<i>Ophiostomatales</i>: <i>Ascomycota</i>) are obligate symbionts of ambrosia beetles, some of which pose a substantial threat to forest trees. <i>Leucaena leucocephala</i> is a small mimosoid tree species that is considered as an invasive weed in most of its introduced range globally. During a field expedition on the French island of Réunion, dying <i>L. leucocephala</i> trees were observed. Samples were taken from these trees and isolations made from symptomatic wood tissues that included beetle tunnels, but in the absence of the beetles themselves. Multiple isolates of a fungus resembling a <i>Raffaelea</i> species were obtained from the discoloured wood associated with the beetle tunnels. To determine their identity, microscopic examination was performed and DNA sequences for three gene regions (ITS, LSU, <i>TUB</i>) were obtained. Phylogenetic analyses based on these gene regions revealed that the isolates represent a new species of <i>Raffaelea</i>, described here as <i>R. borbonica</i> <i>sp. nov.</i> A pathogenicity test was conducted with the fungus, which was shown to cause lesions on the inoculated seedlings, but with a low level of aggressiveness.</p>","PeriodicalId":73121,"journal":{"name":"Fungal systematics and evolution","volume":"6 ","pages":"305-314"},"PeriodicalIF":0.0,"publicationDate":"2020-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3114/fuse.2020.06.16","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38358626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}