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The Macroevolutionary History of Bony Fishes: A Paleontological View 硬骨鱼类的宏观进化史:古生物学的观点
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2022-08-26 DOI: 10.1146/annurev-ecolsys-111720-010447
M. Friedman
Bony fishes are the principal group of backboned animals in contemporary aquatic settings. Extant species are the focus of a vigorous program of macroevolutionary research, but paleontology offers important perspectives. Multiple fossil records bear on the evolution of bony fishes, each with its own strengths and weaknesses. Understanding of the interrelationships among living bony fishes has improved substantially in recent years, but confidence in the phylogenetic placement of fossils is highly variable. This reflects limitations in current understanding of both fossil anatomy and hard-tissue characters for extant clades. Patterns of taxonomic and morphological diversity over bony fish history remain incompletely known, with most studies restricted to particular clades or specific intervals of time. The wealth of anatomical data recorded by the fossil record could make an important addition to a growing body of work examining phenotypic evolution across living species, but incorporating this information requires the placement of fossils within phylogenetic trees. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 53 is November 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
硬骨鱼是当代水生环境中主要的脊椎动物群。现存物种是宏观进化研究的重点,但古生物学提供了重要的视角。多种化石记录都与硬骨鱼类的进化有关,每种都有自己的优缺点。近年来,对活硬骨鱼之间相互关系的了解有了很大的提高,但对化石系统发育位置的信心是高度可变的。这反映了目前对现存进化枝的化石解剖和硬组织特征的理解的局限性。硬骨鱼历史上的分类和形态多样性模式仍然不完全清楚,大多数研究仅限于特定的分支或特定的时间间隔。化石记录所记录的丰富的解剖数据可以为研究现存物种表型进化的工作提供重要的补充,但要整合这些信息,需要将化石置于系统发育树中。《生态、进化和分类学年度评论》第53卷的最终在线出版日期预计为2022年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 3
Evolution and Community Assembly Across Spatial Scales 跨空间尺度的进化与群落聚集
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2022-08-17 DOI: 10.1146/annurev-ecolsys-102220-024934
M. Leibold, Lynn Govaert, N. Loeuille, L. De Meester, M. C. Urban
The finding that adaptive evolution can often be substantial enough to alter ecological dynamics challenges traditional views of community ecology that ignore evolution. Here, we propose that evolution might commonly alter both local and regional processes of community assembly. We show how adaptation can substantially affect community assembly and that these effects depend on regional (metacommunity) factors, including environmental heterogeneity and its spatial structure. In particular, early colonists can often arrive from a nearby community, adapt to local conditions, and subsequently alter the establishment or abundance of late-arriving species, often producing an evolutionary priority effect. We also discuss how interaction type and relative rates of colonization, evolution, and community interactions determine divergent community outcomes. We describe new conceptual approaches that provide insights into these dynamics and statistical methods that can better evaluate their importance. Overall, we demonstrate that accounting for adaptation during community assembly opens up novel ways for making progress on fundamental questions in community ecology. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 53 is November 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
适应性进化往往足以改变生态动态,这一发现挑战了忽视进化的传统群落生态学观点。在这里,我们提出进化可能通常改变社区聚集的局部和区域过程。我们展示了适应如何实质性地影响群落聚集,以及这些影响取决于区域(元群落)因素,包括环境异质性及其空间结构。特别是,早期的殖民者通常可以从附近的社区到达,适应当地的条件,并随后改变迟来物种的建立或数量,通常产生进化优先效应。我们还讨论了殖民化、进化和社区互动的相互作用类型和相对比率如何决定不同的社区结果。我们描述了新的概念方法,提供了对这些动态和统计方法的见解,可以更好地评估它们的重要性。总的来说,我们证明了在群落聚集过程中考虑适应为在群落生态学的基本问题上取得进展开辟了新的途径。《生态、进化和分类学年度评论》第53卷的最终在线出版日期预计为2022年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 13
The Evolution and Ecology of Interactions Between Ants and Honeydew-Producing Hemipteran Insects 蚂蚁与产蜜半翅目昆虫相互作用的进化与生态学
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2022-08-17 DOI: 10.1146/annurev-ecolsys-102220-014840
Annika S. Nelson, K. Mooney
The interactions between ants and certain sap-feeding insects in the order Hemiptera are classic examples of food-for-protection mutualisms. In these associations, herbivorous hemipterans use a highly specialized, straw-like mouthpart to consume sap directly from plant phloem and xylem and, as a result, excrete a sugar-rich waste product called honeydew. Ant foragers in turn use specialized adaptations to collect and share honeydew with nestmates and, in exchange, protect hemipterans against predators. The two key innovations underlying this interaction—hemipteran sap feeding and ant harvesting of honeydew—have driven the evolutionary success and ecological dominance of ants. These interactions also carry unique costs and benefits for each partner and are highly context dependent. Understanding the factors mediating this mutualism is critical, as these interactions have broader ecological consequences for the natural and agricultural ecosystems in which they are embedded. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 53 is November 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
蚂蚁和某些半翅目取食汁液的昆虫之间的相互作用是食物换保护的典型例子。在这些联系中,草食性半足类动物使用一个高度专业化的、类似稻草的口器直接从植物韧皮部和木质部吸收汁液,结果,排泄出一种富含糖的废物,称为蜜露。蚂蚁觅食者反过来利用特殊的适应性来收集和分享蜜露,作为交换,保护半足类动物免受捕食者的侵害。这种相互作用背后的两个关键创新——半翅蚁取食汁液和蚂蚁采集蜜露——推动了蚂蚁的进化成功和生态优势。这些互动对每个合作伙伴都有独特的成本和收益,并且高度依赖于环境。了解促成这种共生关系的因素至关重要,因为这些相互作用对它们所处的自然和农业生态系统具有更广泛的生态影响。《生态、进化和分类学年度评论》第53卷的最终在线出版日期预计为2022年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 9
Cophylogenetic Methods to Untangle the Evolutionary History of Ecological Interactions 解开生态相互作用进化史的共生发生方法
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2022-08-16 DOI: 10.1146/annurev-ecolsys-102320-112823
Wade Dismukes, Mariana P. Braga, David H. Hembry, T. Heath, Michael J. Landis
Myriad branches in the tree of life are intertwined through ecological relationships. Biologists have long hypothesized that intimate symbioses between lineages can influence diversification patterns to the extent that it leaves a topological imprint on the phylogenetic trees of interacting clades. Over the past few decades, cophylogenetic methods development has provided a toolkit for identifying such histories of codiversification, yet it is often difficult to determine which tools best suit the task at hand. In this review, we organize currently available cophylogenetic methods into three categories—pattern-based statistics, event-scoring methods, and more recently developed generative model–based methods—and discuss their assumptions and appropriateness for different types of cophylogenetic questions. We classify cophylogenetic systems based on their biological properties to provide a framework for empiricists investigating the macroevolution of symbioses. In addition, we provide recommendations for the next generation of cophylogenetic models that we hope will facilitate further methods development. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 53 is November 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
生命之树上无数的分支通过生态关系交织在一起。生物学家长期以来一直假设,谱系之间的亲密共生可以影响多样化模式,以至于它在相互作用的进化枝的系统发育树上留下了拓扑印记。在过去的几十年里,共进化方法的发展为识别共同多样化的历史提供了一个工具包,但通常很难确定哪种工具最适合手头的任务。在这篇综述中,我们将目前可用的共同发育方法分为三类——基于模式的统计方法、事件评分方法和最近开发的基于生成模型的方法——并讨论了它们的假设和对不同类型的共同发育问题的适用性。我们根据它们的生物学特性对共生系统进行分类,为经验主义者研究共生的宏观进化提供了一个框架。此外,我们对下一代的共生模型提出了建议,希望能促进进一步的方法开发。《生态、进化和分类学年度评论》第53卷的最终在线出版日期预计为2022年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 5
Evolutionary Ecology of Fire 火的进化生态学
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2022-08-16 DOI: 10.1146/annurev-ecolsys-102320-095612
J. Keeley, J. Pausas
Fire has been an ecosystem process since plants colonized land over 400 million years ago. Many diverse traits provide a fitness benefit following fires, and these adaptive traits vary with the fire regime. Some of these traits enhance fire survival, while others promote recruitment in the postfire environment. Demonstrating that these traits are fire adaptations is challenging, since many arose early in the paleontological record, although increasingly better fossil records and phylogenetic analysis make timing of these trait origins to fire more certain. Resprouting from the base of stems is the most widely distributed fire-adaptive trait, and it is likely to have evolved under a diversity of disturbance types. The origins of other traits like serotiny, thick bark, fire-stimulated germination, and postfire flowering are more tightly linked to fire. Fire-adaptive traits occur in many environments: boreal and temperate forests, Mediterranean-type climate (MTC) shrublands, savannas, and other grasslands. MTC ecosystems are distinct in that many taxa in different regions have lost the resprouting ability and depend solely on postfire recruitment for postfire recovery. This obligate seeding mode is perhaps the most vulnerable fire-adaptive syndrome in the face of current global change, particularly in light of increasing anthropogenic fire frequency. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 53 is November 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
自从4亿多年前植物占领陆地以来,火灾一直是一个生态系统过程。许多不同的特征提供了火灾后的健康益处,这些适应特征随着火灾制度而变化。其中一些特征可以提高火灾存活率,而另一些特征则有助于在火灾后的环境中招募新兵。证明这些特征是火的适应性是具有挑战性的,因为许多特征出现在古生物记录的早期,尽管越来越好的化石记录和系统发育分析使这些特征起源的时间更加确定。从茎基部再生是最广泛分布的火适应特征,它可能是在多种干扰类型下进化而来的。其他特征的起源,如服务性、厚树皮、火刺激发芽和火后开花,都与火有更紧密的联系。火适应特征出现在许多环境中:北方和温带森林、地中海型气候(MTC)灌丛、稀树草原和其他草原。MTC生态系统的不同之处在于,不同地区的许多分类群已经失去了再生能力,完全依赖于火灾后的补充来恢复。面对当前的全球变化,特别是在人为火灾频率增加的情况下,这种强制性播种模式可能是最脆弱的火灾适应综合征。《生态、进化和分类学年度评论》第53卷的最终在线出版日期预计为2022年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 22
Integrating Fossil Observations Into Phylogenetics Using the Fossilized Birth–Death Model 使用化石出生-死亡模型将化石观察整合到系统发育中
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2022-08-16 DOI: 10.1146/annurev-ecolsys-102220-030855
A. Wright, David W. Bapst, Joëlle Barido‐Sottani, R. Warnock
Over the past decade, a new set of methods for estimating dated trees has emerged. Originally referred to as the fossilized birth–death (FBD) process, this single model has expanded to a family of models that allows researchers to coestimate evolutionary parameters (e.g., diversification, sampling) and patterns alongside divergence times for a variety of applications from paleobiology to real-time epidemiology. We provide an overview of this family of models. We explore the ways in which these models correspond to methods in quantitative paleobiology, as the FBD process provides a framework through which neontological and paleontological approaches to phylogenetics and macroevolution can be unified. We also provide an overview of challenges associated with applying FBD models, particularly with an eye toward the fossil record. We conclude this piece by discussing several exciting avenues for the inclusion of fossil data in phylogenetic analyses. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 53 is November 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
在过去的十年里,出现了一套新的估算树龄的方法。最初被称为化石出生-死亡(FBD)过程,这个单一模型已经扩展到一个模型家族,使研究人员能够共同估计进化参数(例如,多样化,采样)和模式以及从古生物学到实时流行病学的各种应用的分化时间。我们提供了这一系列模型的概述。我们探索了这些模型与定量古生物学方法相对应的方式,因为FBD过程提供了一个框架,通过该框架,新生学和古生物学方法可以统一系统发育和宏观进化。我们还概述了与应用FBD模型相关的挑战,特别是着眼于化石记录。我们通过讨论几种令人兴奋的将化石数据纳入系统发育分析的途径来结束这篇文章。《生态、进化和分类学年度评论》第53卷的最终在线出版日期预计为2022年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 13
Consistent Individual Behavioral Variation: What Do We Know and Where Are We Going? 一致的个体行为差异:我们知道什么,我们要去哪里?
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2022-08-08 DOI: 10.1146/annurev-ecolsys-102220-011451
K. Laskowski, Chia-Chen Chang, Kirsten Sheehy, Jonathan Aguiñaga
The study of individual behavioral variation, sometimes called animal personalities or behavioral types, is now a well-established area of research in behavioral ecology and evolution. Considerable theoretical work has developed predictions about its ecological and evolutionary causes and consequences, and studies testing these theories continue to grow. Here, we synthesize the current empirical work to shed light on which theories are well supported and which need further refinement. We find that the major frameworks explaining the existence of individual behavioral variation, the pace-of-life syndrome hypothesis and state-dependent feedbacks models, have mixed support. The consequences of individual behavioral variation are well studied at the individual level but less is known about consequences at higher levels such as among species and communities. The focus of this review is to reevaluate and reestablish the foundation of individual behavioral variation research: What do we know? What questions remain? And where are we going next? Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 53 is November 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
个体行为变异的研究,有时被称为动物个性或行为类型,现在是行为生态学和进化研究的一个成熟领域。相当多的理论工作已经对其生态和进化的原因和后果进行了预测,检验这些理论的研究也在不断增加。在这里,我们综合当前的实证工作,以阐明哪些理论得到了很好的支持,哪些理论需要进一步完善。我们发现,解释个体行为差异存在的主要框架,即生活节奏综合症假说和状态依赖反馈模型,得到了不同的支持。个体行为变化的后果在个体层面上得到了很好的研究,但对物种和群落等更高层面的后果知之甚少。这篇综述的重点是重新评估和重建个体行为变异研究的基础:我们知道什么?还有什么问题?我们接下来要去哪里?《生态、进化和分类学年度评论》第53卷的最终在线出版日期预计为2022年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 18
Evolutionary Transitions Between Hermaphroditism and Dioecy in Animals and Plants 动物和植物雌雄同体和雌雄异株之间的进化转变
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2022-08-08 DOI: 10.1146/annurev-ecolsys-102320-085812
J. Pannell, Crispin Y Jordan
We review transitions between hermaphroditism and dioecy in animals and (mainly flowering) plants. Although hermaphroditism and dioecy represent two end states in a sex-allocation continuum, both vary in major ways among clades. However, drawing on sex-allocation theory and distinguishing between self-fertilization and outcrossing, we recognize five broad paths to dioecy and two broad paths to hermaphroditism. Which path is taken likely depends on the starting state (especially in terms of the mating system), as well as the ecological setting or genetic context of the transition. Androdioecy may have been more important in some transitions to dioecy than current theory would suggest, and gynodioecy may often be an evolutionary end point in itself rather than a step between hermaphroditism and dioecy. Transitions between environmental and genetic sex determination may also play an important role in sexual-system evolution. Further theory is required to address these possibilities. Detailed empirical work is also greatly needed, especially in animal clades that vary in their sexual system. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 53 is November 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
我们回顾了雌雄同体和雌雄异株在动物和(主要是开花)植物之间的转变。虽然雌雄同体和雌雄异株在性别分配连续体中代表了两种最终状态,但两者在进化枝之间的主要方式各不相同。然而,根据性别分配理论,并区分自交受精和异交,我们认识到雌雄异株的五条主要途径和两性异体的两条主要途径。选择哪条路径可能取决于起始状态(特别是在交配系统方面),以及过渡的生态环境或遗传背景。在一些向雌雄异株过渡的过程中,雄蕊异体可能比目前的理论所认为的更为重要,而雌蕊异体本身可能是一个进化的终点,而不是雌雄同体和雌雄异体之间的一个步骤。环境和遗传性别决定之间的转换也可能在性系统进化中发挥重要作用。需要进一步的理论来解释这些可能性。详细的经验性工作也是非常需要的,特别是在性系统不同的动物分支中。《生态、进化和分类学年度评论》第53卷的最终在线出版日期预计为2022年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 8
Asymmetric Inheritance: The Diversity and Evolution of Non-Mendelian Reproductive Strategies 非对称遗传:非孟德尔繁殖策略的多样性和进化
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2022-07-29 DOI: 10.1146/annurev-ecolsys-021822-010659
L. Ross, Andrew J. Mongue, C. N. Hodson, T. Schwander
The ability to reproduce is the key trait that distinguishes living organisms from inorganic matter, and the strategies used to achieve successful reproduction are almost as diverse as the organisms themselves. In animals, the most widespread form of reproduction involves separate male and female sexes: Each sex produces haploid gametes via meiosis, and two gametes fuse to form a new diploid organism. In some cases, both parents contribute equally to the nuclear and cytoplasmic genomes of their offspring. However, such fully symmetric reproduction of both parents represents the extreme end of a continuum toward complete asymmetry, where offspring inherit their nuclear and cytoplasmic genomes from only one of the two parents. Asymmetries also occur with respect to the fate of maternally and paternally inherited genomes and which sex is affected by non-Mendelian inheritance. In this review, we describe the diversity of animal reproductive systems along different axes with a symmetry–asymmetry continuum and suggest evolutionary routes that may have led to increased levels of asymmetry. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 53 is November 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
繁殖能力是生物区别于无机物的关键特征,而用于成功繁殖的策略几乎和生物本身一样多样化。在动物中,最普遍的繁殖形式是雄性和雌性分开:每一种性别通过减数分裂产生单倍体配子,两个配子融合形成一个新的二倍体有机体。在某些情况下,父母双方对后代的核基因组和细胞质基因组贡献相同。然而,父母双方的这种完全对称的繁殖代表了完全不对称连续体的极端末端,在这种情况下,后代只从父母双方中的一方遗传了他们的细胞核和细胞质基因组。不对称也发生在母系和父系遗传基因组的命运上,以及哪个性别受到非孟德尔遗传的影响。在这篇综述中,我们描述了动物生殖系统沿不同轴的多样性,具有对称-不对称连续体,并提出了可能导致不对称水平增加的进化途径。《生态、进化和分类学年度评论》第53卷的最终在线出版日期预计为2022年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 4
Fungal Dispersal Across Spatial Scales 真菌在空间尺度上的扩散
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2022-07-25 DOI: 10.1146/annurev-ecolsys-012622-021604
V. Chaudhary, C. Aguilar‐Trigueros, India Mansour, M. Rillig
Fungi play key roles in ecosystems and human societies as decomposers, nutrient cyclers, mutualists, and pathogens. Estimates suggest that roughly 3–13 million fungal species exist worldwide, yet considerable knowledge gaps exist regarding the mechanisms and consequences, both ecological and social, of fungal dispersal from local to global scales. In this review, we summarize concepts underlying fungal dispersal, review recent research, and explore how fungi possess unique characteristics that can broaden our understanding of general dispersal ecology. We highlight emerging frontiers in fungal dispersal research that integrate technological advances with trait-based ecology, movement ecology, social–ecological systems, and work in unexplored environments. Outstanding research questions across these themes are presented to stimulate theoretical and empirical research in fungal dispersal ecology. Advances in fungal dispersal will improve our understanding of fungal community assembly and biogeography across a range of spatial scales, with implications for ecosystem functioning, global food security, and human health. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 53 is November 2022. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
真菌作为分解者、营养循环者、共生者和病原体在生态系统和人类社会中发挥着关键作用。据估计,全世界大约存在300 - 1300万种真菌,但关于真菌从地方到全球扩散的生态和社会机制和后果,存在相当大的知识差距。在这篇综述中,我们总结了真菌扩散的基本概念,回顾了最近的研究,并探讨了真菌如何具有独特的特征,可以拓宽我们对一般扩散生态学的理解。我们重点介绍了真菌传播研究的新兴前沿,这些研究将技术进步与基于性状的生态学、运动生态学、社会生态系统和未开发环境中的工作相结合。突出的研究问题在这些主题提出,以刺激真菌扩散生态学的理论和实证研究。真菌传播的进展将提高我们对真菌群落组成和生物地理学在一系列空间尺度上的理解,对生态系统功能、全球粮食安全和人类健康具有重要意义。《生态、进化和分类学年度评论》第53卷的最终在线出版日期预计为2022年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 5
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