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Evolvability: A Quantitative-Genetics Perspective 进化:一个数量遗传学的观点
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-11-02 DOI: 10.1146/annurev-ecolsys-011121-021241
T. F. Hansen, C. Pélabon
The concept of evolvability emerged in the early 1990s and soon became fashionable as a label for different streams of research in evolutionary biology. In evolutionary quantitative genetics, evolvability is defined as the ability of a population to respond to directional selection. This differs from other fields by treating evolvability as a property of populations rather than organisms or lineages and in being focused on quantification and short-term prediction rather than on macroevolution. While the term evolvability is new to quantitative genetics, many of the associated ideas and research questions have been with the field from its inception as biometry. Recent research on evolvability is more than a relabeling of old questions, however. New operational measures of evolvability have opened possibilities for understanding adaptation to rapid environmental change, assessing genetic constraints, and linking micro- and macroevolution.
可进化性的概念出现在20世纪90年代初,并很快成为进化生物学不同研究流的时髦标签。在进化定量遗传学中,进化能力被定义为种群对方向选择作出反应的能力。这与其他领域的不同之处在于,它将可进化性视为群体的特性,而不是生物体或谱系的特性,它侧重于量化和短期预测,而不是宏观进化。虽然“可进化性”一词对定量遗传学来说是新的,但许多相关的想法和研究问题从生物计量学开始就与该领域有关。然而,最近关于可进化性的研究不仅仅是对老问题的重新贴标签。新的可进化性操作措施为理解对快速环境变化的适应、评估遗传约束以及将微观和宏观进化联系起来提供了可能性。
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引用次数: 27
A Dual Role for Behavior in Evolution and Shaping Organismal Selective Environments 行为在进化和形成生物选择环境中的双重作用
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-11-02 DOI: 10.1146/annurev-ecolsys-012921-052523
W. Wcislo
The hypothesis that evolved behaviors play a determining role in facilitating and impeding the evolution of other traits has been discussed for more than 100 years with little consensus beyond an agreement that the ideas are theoretically plausible in accord with the Modern Synthesis. Many recent reviews of the genomic, epigenetic, and developmental mechanisms underpinning major behavioral transitions show how facultative expression of novel behaviors can lead to the evolution of obligate behaviors and structures that enhance behavioral function. Phylogenetic and genomic studies indicate that behavioral traits are generally evolutionarily more labile than other traits and that they help shape selective environments on the latter traits. Adaptive decision-making to encounter resources and avoid stress sources requires specific sensory inputs, which behaviorally shape selective environments by determining those features of the external world that are biologically relevant. These recent findings support the hypothesis of a dual role for behavior in evolution and are consistent with current evolutionary theory.
进化的行为在促进和阻碍其他特征的进化中起决定性作用的假设已经讨论了100多年,除了同意这些观点在理论上是合理的,与现代综合理论一致之外,几乎没有达成共识。最近许多关于支持主要行为转变的基因组、表观遗传学和发育机制的综述表明,新行为的兼性表达如何导致增强行为功能的专性行为和结构的进化。系统发育和基因组研究表明,行为特征在进化上通常比其他特征更不稳定,它们有助于形成后一种特征的选择环境。应对资源和避免压力源的适应性决策需要特定的感官输入,这些感官输入通过确定与生物相关的外部世界的那些特征,在行为上塑造了选择性环境。这些最近的发现支持了行为在进化中扮演双重角色的假设,并与当前的进化理论相一致。
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引用次数: 3
Effects of Selection at Linked Sites on Patterns of Genetic Variability. 连锁位点选择对遗传变异模式的影响。
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-11-01 DOI: 10.1146/annurev-ecolsys-010621-044528
Brian Charlesworth, Jeffrey D Jensen

Patterns of variation and evolution at a given site in a genome can be strongly influenced by the effects of selection at genetically linked sites. In particular, the recombination rates of genomic regions correlate with their amount of within-population genetic variability, the degree to which the frequency distributions of DNA sequence variants differ from their neutral expectations, and the levels of adaptation of their functional components. We review the major population genetic processes that are thought to lead to these patterns, focusing on their effects on patterns of variability: selective sweeps, background selection, associative overdominance, and Hill-Robertson interference among deleterious mutations. We emphasize the difficulties in distinguishing among the footprints of these processes and disentangling them from the effects of purely demographic factors such as population size changes. We also discuss how interactions between selective and demographic processes can significantly affect patterns of variability within genomes.

基因组中某一特定位点的变异和进化模式可能受到遗传关联位点的选择效应的强烈影响。特别是,基因组区域的重组率与其种群内遗传变异性的数量、DNA序列变异的频率分布与其中性预期的差异程度以及其功能成分的适应水平相关。我们回顾了被认为导致这些模式的主要群体遗传过程,重点关注它们对变异性模式的影响:选择性扫描、背景选择、关联显性和有害突变之间的Hill-Robertson干扰。我们强调在区分这些进程的足迹并将它们与诸如人口规模变化等纯粹人口因素的影响分开方面的困难。我们还讨论了选择和人口过程之间的相互作用如何显著影响基因组内的变异模式。
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引用次数: 47
Cascading Impacts of Seed Disperser Loss on Plant Communities and Ecosystems 种子传播者损失对植物群落和生态系统的级联影响
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-09-08 DOI: 10.1146/annurev-ecolsys-012221-111742
Haldre S. Rogers, Isabel Donoso, A. Traveset, Evan C. Fricke
Seed dispersal is key to the persistence and spread of plant populations. Because the majority of plant species rely on animals to disperse their seeds, global change drivers that directly affect animals can cause cascading impacts on plant communities. In this review, we synthesize studies assessing how disperser loss alters plant populations, community patterns, multitrophic interactions, and ecosystem functioning. We argue that the magnitude of risk to plants from disperser loss is shaped by the combination of a plant species’ inherent dependence on seed dispersers and the severity of the hazards faced by their dispersers. Because the factors determining a plant species’ risk of decline due to disperser loss can be related to traits of the plants and dispersers, our framework enables a trait-based understanding of change in plant community composition and ecosystem functioning. We discuss how interactions among plants, among dispersers, and across other trophic levels also mediate plant community responses, and we identify areas for future research to understand and mitigate the consequences of disperser loss on plants globally. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
种子传播是植物种群持续和传播的关键。由于大多数植物物种依赖动物传播种子,直接影响动物的全球变化驱动因素可能对植物群落造成级联影响。在这篇综述中,我们综合了研究如何评估分散物损失改变植物种群,群落模式,多营养相互作用和生态系统功能。我们认为,分散剂损失对植物的风险程度是由植物物种对种子分散剂的内在依赖和它们所面临的危害的严重程度共同决定的。由于决定植物物种因分散剂丧失而衰退风险的因素可能与植物和分散剂的性状有关,因此我们的框架可以基于性状来理解植物群落组成和生态系统功能的变化。我们讨论了植物之间、散布者之间和其他营养水平之间的相互作用如何介导植物群落的反应,并确定了未来研究的领域,以了解和减轻全球植物散布者损失的后果。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 47
Causes and Consequences of Apparent Timescaling Across All Estimated Evolutionary Rates 在所有估计的进化速率中明显时间尺度的原因和后果
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-09-08 DOI: 10.1146/annurev-ecolsys-011921-023644
L. Harmon, Matthew W. Pennell, L. F. Henao-Diaz, J. Rolland, Breanna Sipley, J. Uyeda
Evolutionary rates play a central role in connecting micro- and macroevolution. All evolutionary rate estimates, including rates of molecular evolution, trait evolution, and lineage diversification, share a similar scaling pattern with time: The highest rates are those measured over the shortest time interval. This creates a disconnect between micro- and macroevolution, although the pattern is the opposite of what some might expect: Patterns of change over short timescales predict that evolution has tremendous potential to create variation and that potential is barely tapped by macroevolution. In this review, we discuss this shared scaling pattern across evolutionary rates. We break down possible explanations for scaling into two categories, estimation error and model misspecification, and discuss how both apply to each type of rate. We also discuss the consequences of this ubiquitous pattern, which can lead to unexpected results when comparing rates over different timescales. Finally, after addressing purely statistical concerns, we explore a few possibilities for a shared unifying explanation across the three types of rates that results from a failure to fully understand and account for how biological processes scale over time. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
进化速率在连接微观和宏观进化中起着核心作用。所有的进化速率估计,包括分子进化速率、性状进化速率和谱系多样化速率,都与时间有相似的比例模式:在最短的时间间隔内测量的速率最高。这造成了微观和宏观进化之间的脱节,尽管这种模式与一些人可能期望的相反:在短时间尺度上的变化模式预示着进化具有创造变异的巨大潜力,而这种潜力几乎没有被宏观进化所利用。在这篇综述中,我们讨论了跨进化速率的共享缩放模式。我们将缩放的可能解释分为两类,估计错误和模型错误说明,并讨论如何将两者应用于每种类型的速率。我们还讨论了这种无处不在的模式的后果,当比较不同时间尺度上的比率时,它可能导致意想不到的结果。最后,在解决了纯粹的统计问题之后,我们探讨了三种类型的速率共享统一解释的几种可能性,这些速率是由于未能充分理解和解释生物过程如何随时间扩展而产生的。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 14
What Have We Learned from the First 500 Avian Genomes? 我们从前500个鸟类基因组中学到了什么?
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-09-08 DOI: 10.1146/annurev-ecolsys-012121-085928
Gustavo A. Bravo, C. J. Schmitt, S. Edwards
The increased capacity of DNA sequencing has significantly advanced our understanding of the phylogeny of birds and the proximate and ultimate mechanisms molding their genomic diversity. In less than a decade, the number of available avian reference genomes has increased to over 500—approximately 5% of bird diversity—placing birds in a privileged position to advance the fields of phylogenomics and comparative, functional, and population genomics. Whole-genome sequence data, as well as indels and rare genomic changes, are further resolving the avian tree of life. The accumulation of bird genomes, increasingly with long-read sequence data, greatly improves the resolution of genomic features such as germline-restricted chromosomes and the W chromosome, and is facilitating the comparative integration of genotypes and phenotypes. Community-based initiatives such as the Bird 10,000 Genomes Project and Vertebrate Genome Project are playing a fundamental role in amplifying and coalescing a vibrant international program in avian comparative genomics. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
DNA测序能力的提高极大地促进了我们对鸟类系统发育及其基因组多样性形成的近因和最终机制的理解。在不到十年的时间里,鸟类参考基因组的数量已经增加到500多个,约占鸟类多样性的5%,这使得鸟类在系统基因组学、比较基因组学、功能基因组学和种群基因组学领域处于有利地位。全基因组序列数据,以及索引和罕见的基因组变化,正在进一步解决鸟类生命树的问题。鸟类基因组的积累,以及越来越多的长读序列数据,极大地提高了生殖系限制性染色体和W染色体等基因组特征的分辨率,并促进了基因型和表型的比较整合。以社区为基础的计划,如鸟类10,000基因组计划和脊椎动物基因组计划,在扩大和整合一个充满活力的国际鸟类比较基因组学计划方面发挥着重要作用。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 28
Evolution of Thermal Sensitivity in Changing and Variable Climates 变化和变气候条件下热敏性的演化
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-09-03 DOI: 10.1146/annurev-ecolsys-011521-102856
Lauren B. Buckley, J. Kingsolver
Evolutionary adaptation to temperature and climate depends on both the extent to which organisms experience spatial and temporal environmental variation (exposure) and how responsive they are to the environmental variation (sensitivity). Theoretical models and experiments suggesting substantial potential for thermal adaptation have largely omitted realistic environmental variation. Environmental variation can drive fluctuations in selection that slow adaptive evolution. We review how carefully filtering environmental conditions based on how organisms experience their environment and further considering organismal sensitivity can improve predictions of thermal adaptation. We contrast taxa differing in exposure and sensitivity. Plasticity can increase the rate of evolutionary adaptation in taxa exposed to pronounced environmental variation. However, forms of plasticity that severely limit exposure, such as behavioral thermoregulation and phenological shifts, can hinder thermal adaptation. Despite examples of rapid thermal adaptation, experimental studies often reveal evolutionary constraints. Further investigating these constraints and issues of timescale and thermal history are needed to predict evolutionary adaptation and, consequently, population persistence in changing and variable environments. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
对温度和气候的进化适应既取决于生物体经历空间和时间环境变化的程度(暴露),也取决于它们对环境变化的反应程度(敏感性)。理论模型和实验表明,热适应的巨大潜力在很大程度上忽略了现实的环境变化。环境变化会导致选择的波动,从而减缓适应性进化。我们回顾了如何根据生物体如何体验其环境并进一步考虑生物体敏感性来仔细过滤环境条件可以改善热适应的预测。我们对比不同的分类群在暴露和敏感性。可塑性可以提高暴露于明显环境变化的分类群的进化适应速度。然而,严重限制暴露的可塑性形式,如行为体温调节和物候变化,可能会阻碍热适应。尽管有快速热适应的例子,实验研究经常揭示进化限制。需要进一步研究这些限制和时间尺度和热历史问题,以预测进化适应,从而预测种群在变化和可变环境中的持久性。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 24
The Emerging Phylogenetic Perspective on the Evolution of Actinopterygian Fishes 放光鳍类鱼类进化的系统发育新观点
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-09-03 DOI: 10.1146/annurev-ecolsys-122120-122554
A. Dornburg, T. Near
The emergence of a new phylogeny of ray-finned fishes at the turn of the twenty-first century marked a paradigm shift in understanding the evolutionary history of half of living vertebrates. We review how the new ray-finned fish phylogeny radically departs from classical expectations based on morphology. We focus on evolutionary relationships that span the backbone of ray-finned fish phylogeny, from the earliest divergences among teleosts and nonteleosts to the resolution of major lineages of Percomorpha. Throughout, we feature advances gained by the new phylogeny toward a broader understanding of ray-finned fish evolutionary history and the implications for topics that span from the genetics of human health to reconsidering the concept of living fossils. Additionally, we discuss conceptual challenges that involve reconciling taxonomic classification with phylogenetic relationships and propose an alternate higher-level classification for Percomorpha. Our review highlights remaining areas of phylogenetic uncertainty and opportunities for comparative investigations empowered by this new phylogenetic perspective on ray-finned fishes. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
在21世纪之交,鳍状鱼类新系统发育的出现标志着对一半现存脊椎动物进化史的理解范式的转变。我们回顾了新的鳍鱼系统发育如何从根本上背离基于形态学的经典期望。我们专注于跨越鳍鱼系统发育主干的进化关系,从最早的硬骨鱼和非硬骨鱼之间的分歧到硬骨鱼主要谱系的解决。在整个过程中,我们将介绍新的系统发育所取得的进展,以更广泛地了解鳍鱼的进化史,并对从人类健康遗传学到重新考虑活化石概念的主题产生影响。此外,我们讨论了涉及调和分类学分类与系统发育关系的概念性挑战,并提出了Percomorpha的另一种更高层次的分类。我们的综述突出了系统发育不确定性的剩余领域,并通过这种新的系统发育视角对鳍鱼进行了比较调查。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 36
Sensory and Cognitive Ecology of Bats 蝙蝠的感觉和认知生态学
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-09-03 DOI: 10.1146/annurev-ecolsys-012921-052635
R. Page, Hannah M. ter Hofstede
We see stunning morphological diversity across the animal world. Less conspicuous but equally fascinating are the sensory and cognitive adaptations that determine animals’ interactions with their environments and each other. We discuss the development of the fields of sensory and cognitive ecology and the importance of integrating these fields to understand the evolution of adaptive behaviors. Bats, with their extraordinarily high ecological diversity, are ideal animals for this purpose. An explosion in recent research allows for better understanding of the molecular, genetic, neural, and behavioral bases for sensory ecology and cognition in bats. We give examples of studies that illuminate connections between sensory and cognitive features of information filtering, evolutionary trade-offs in sensory and cognitive processing, and multimodal sensing and integration. By investigating the selective pressures underlying information acquisition, processing, and use in bats, we aim to illuminate patterns and processes driving sensory and cognitive evolution. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
我们在动物世界看到了惊人的形态多样性。不那么引人注目但同样引人入胜的是决定动物与环境以及彼此之间相互作用的感官和认知适应。我们讨论了感觉和认知生态学领域的发展,以及整合这些领域对理解适应行为进化的重要性。具有高度生态多样性的蝙蝠是实现这一目标的理想动物。最近研究的爆炸式增长使我们能够更好地了解蝙蝠感觉生态学和认知的分子、遗传、神经和行为基础。我们举例说明了信息过滤的感觉和认知特征之间的联系,感觉和认知处理的进化权衡,以及多模态感知和整合。通过研究蝙蝠信息获取、处理和使用背后的选择压力,我们旨在阐明驱动感觉和认知进化的模式和过程。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 7
Evolution of Mimicry Rings as a Window into Community Dynamics 拟态环的进化是群落动态的一个窗口
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-09-03 DOI: 10.1146/annurev-ecolsys-012021-024616
Krushnamegh Kunte, A. G. Kizhakke, Viraj Nawge
Mimicry rings are communities of mimetic organisms that are excellent models for ecological and evolutionary studies because the community composition, the nature of the species interactions, the phenotypes under selection, and the selective agents are well characterized. Here, we review how regional and ecological filtering, density- and frequency-dependent selection, toxicity of prey, and age of mimicry rings shape their assembly. We synthesize findings from theoretical and empirical studies to generate the following hypotheses: ( a) the degree of unpalatability and age of mimicry rings increase mimicry ring size and ( b) the degree of unpalatability, generalization of the aposematic signal, and availability of alternative prey are positively related to the breadth of the protection umbrella for an aposematic signal and negatively related to the degree of mimetic resemblance. We also provide a phylogenetic framework in which key aspects of mimicry ring diversification may be studied. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
拟态环是拟态生物的群落,是生态学和进化研究的优秀模型,因为群落组成、物种相互作用的性质、选择下的表型和选择因子都得到了很好的表征。在这里,我们回顾了区域和生态过滤、密度和频率依赖的选择、猎物的毒性和模仿环的年龄如何塑造它们的组合。我们综合了理论和实证研究的结果,得出以下假设:(a)模仿环的不适口程度和年龄增加了模仿环的大小;(b)不适口程度、警告信号的泛化程度和替代猎物的可用性与警告信号的保护伞宽度呈正相关,与模仿相似程度负相关。我们还提供了一个系统发育框架,其中模仿环多样化的关键方面可以研究。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 8
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Annual Review of Ecology, Evolution, and Systematics
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