Pub Date : 2024-09-30DOI: 10.1088/2057-1976/ad8162
Xiang Gu, Chen Dang, Tianyu Shi, Lihan Tang, Kai Wang, Xiangsheng Luo, Yu Zhu, Yuan Feng, Guisen Wu, Ling Zou, Li Sun
Attention Deficit Hyperactivity Disorder (ADHD) is a highly prevalent childhood disorder, and related research has been increasing in recent years. However, it remains a challenging issue to accurately identify individuals with ADHD. The research proposes a method for ADHD detection using Recursive Feature Elimination-Genetic Algorithm (RFE-GA) for the feature selection of EEG data. Firstly, this study employed Transfer Entropy (TE) to construct brain networks from the EEG data of the ADHD and Normal groups, conducting an analysis of effective connectivity to unveil causal relationships in the brain's information exchange activities. Subsequently, a dual-layer feature selection method combining Recursive Feature Elimination (RFE) and Genetic Algorithm (GA) was proposed. Using the global search capability of GA and the feature selection ability of RFE, the performance of each feature subset is evaluated to find the optimal feature subset. Finally, a Support Vector Machine (SVM) classifier was employed to classify the ultimate feature set. The results revealed the control group exhibited lower connectivity strength in the left temporal alpha and beta bands, but higher frontal connectivity strength compared to the ADHD group. Additionally, in the gamma frequency band, the control group had higher top lobe connectivity strength than the ADHD group. Through the RFE-GA feature selection method, the optimized feature set was more concise, achieving classification accuracies of 91.3%, 94.1%, and 90.7% for the alpha, beta, and gamma frequency bands, respectively. The proposed RFE-GA feature selection method significantly reduced the number of features, thereby improving classification accuracy.
.
{"title":"A Novel Brain Network Analysis Method for Pediatric ADHD Using RFE-GA Feature Selection Strategy.","authors":"Xiang Gu, Chen Dang, Tianyu Shi, Lihan Tang, Kai Wang, Xiangsheng Luo, Yu Zhu, Yuan Feng, Guisen Wu, Ling Zou, Li Sun","doi":"10.1088/2057-1976/ad8162","DOIUrl":"https://doi.org/10.1088/2057-1976/ad8162","url":null,"abstract":"<p><p>Attention Deficit Hyperactivity Disorder (ADHD) is a highly prevalent childhood disorder, and related research has been increasing in recent years. However, it remains a challenging issue to accurately identify individuals with ADHD. The research proposes a method for ADHD detection using Recursive Feature Elimination-Genetic Algorithm (RFE-GA) for the feature selection of EEG data. Firstly, this study employed Transfer Entropy (TE) to construct brain networks from the EEG data of the ADHD and Normal groups, conducting an analysis of effective connectivity to unveil causal relationships in the brain's information exchange activities. Subsequently, a dual-layer feature selection method combining Recursive Feature Elimination (RFE) and Genetic Algorithm (GA) was proposed. Using the global search capability of GA and the feature selection ability of RFE, the performance of each feature subset is evaluated to find the optimal feature subset. Finally, a Support Vector Machine (SVM) classifier was employed to classify the ultimate feature set. The results revealed the control group exhibited lower connectivity strength in the left temporal alpha and beta bands, but higher frontal connectivity strength compared to the ADHD group. Additionally, in the gamma frequency band, the control group had higher top lobe connectivity strength than the ADHD group. Through the RFE-GA feature selection method, the optimized feature set was more concise, achieving classification accuracies of 91.3%, 94.1%, and 90.7% for the alpha, beta, and gamma frequency bands, respectively. The proposed RFE-GA feature selection method significantly reduced the number of features, thereby improving classification accuracy.
.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142340543","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-30DOI: 10.1088/2057-1976/ad7bc0
Tamanna Sood, Padmavati Khandnor, Rajesh Bhatia
Cervical cancer remains a major global health challenge, accounting for significant morbidity and mortality among women. Early detection through screening, such as Pap smear tests, is crucial for effective treatment and improved patient outcomes. However, traditional manual analysis of Pap smear images is labor-intensive, subject to human error, and requires extensive expertise. To address these challenges, automated approaches using deep learning techniques have been increasingly explored, offering the potential for enhanced diagnostic accuracy and efficiency. This research focuses on improving cervical cancer detection from Pap smear images using advanced deep-learning techniques. Specifically, we aim to enhance classification performance by leveraging Transfer Learning (TL) combined with an attention mechanism, supplemented by effective preprocessing techniques. Our preprocessing pipeline includes image normalization, resizing, and the application of Histogram of Oriented Gradients (HOG), all of which contribute to better feature extraction and improved model performance. The dataset used in this study is the Mendeley Liquid-Based Cytology (LBC) dataset, which provides a comprehensive collection of cervical cytology images annotated by expert cytopathologists. Initial experiments with the ResNet model on raw data yielded an accuracy of 63.95%. However, by applying our preprocessing techniques and integrating an attention mechanism, the accuracy of the ResNet model increased dramatically to 96.74%. Further, the Xception model, known for its superior feature extraction capabilities, achieved the best performance with an accuracy of 98.95%, along with high precision (0.97), recall (0.99), and F1-Score (0.98) on preprocessed data with an attention mechanism. These results underscore the effectiveness of combining preprocessing techniques, TL, and attention mechanisms to significantly enhance the performance of automated cervical cancer detection systems. Our findings demonstrate the potential of these advanced techniques to provide reliable, accurate, and efficient diagnostic tools, which could greatly benefit clinical practice and improve patient outcomes in cervical cancer screening.
{"title":"Enhancing pap smear image classification: integrating transfer learning and attention mechanisms for improved detection of cervical abnormalities.","authors":"Tamanna Sood, Padmavati Khandnor, Rajesh Bhatia","doi":"10.1088/2057-1976/ad7bc0","DOIUrl":"10.1088/2057-1976/ad7bc0","url":null,"abstract":"<p><p>Cervical cancer remains a major global health challenge, accounting for significant morbidity and mortality among women. Early detection through screening, such as Pap smear tests, is crucial for effective treatment and improved patient outcomes. However, traditional manual analysis of Pap smear images is labor-intensive, subject to human error, and requires extensive expertise. To address these challenges, automated approaches using deep learning techniques have been increasingly explored, offering the potential for enhanced diagnostic accuracy and efficiency. This research focuses on improving cervical cancer detection from Pap smear images using advanced deep-learning techniques. Specifically, we aim to enhance classification performance by leveraging Transfer Learning (TL) combined with an attention mechanism, supplemented by effective preprocessing techniques. Our preprocessing pipeline includes image normalization, resizing, and the application of Histogram of Oriented Gradients (HOG), all of which contribute to better feature extraction and improved model performance. The dataset used in this study is the Mendeley Liquid-Based Cytology (LBC) dataset, which provides a comprehensive collection of cervical cytology images annotated by expert cytopathologists. Initial experiments with the ResNet model on raw data yielded an accuracy of 63.95%. However, by applying our preprocessing techniques and integrating an attention mechanism, the accuracy of the ResNet model increased dramatically to 96.74%. Further, the Xception model, known for its superior feature extraction capabilities, achieved the best performance with an accuracy of 98.95%, along with high precision (0.97), recall (0.99), and F1-Score (0.98) on preprocessed data with an attention mechanism. These results underscore the effectiveness of combining preprocessing techniques, TL, and attention mechanisms to significantly enhance the performance of automated cervical cancer detection systems. Our findings demonstrate the potential of these advanced techniques to provide reliable, accurate, and efficient diagnostic tools, which could greatly benefit clinical practice and improve patient outcomes in cervical cancer screening.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":"10 6","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142387588","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-27DOI: 10.1088/2057-1976/ad8092
MirHojjat Seyedi
Biological cells, characterized by complex and dynamic structures, demand precise models for comprehensive understanding, especially when subjected to external factors such as electric fields (EF) for manipulation or treatment. This interaction is integral to technologies like pulsed electric fields (PEF), inducing reversible and irreversible structural variations. Our study explores both simplified and sophisticated equivalent circuit models for biological cells under the influence of an external EF, covering diverse cell structures from single- to double-shell configurations. The paper highlights challenges in circuit modeling, specifically addressing the incorporation of reversible or irreversible pores in the membrane during external EF interactions, emphasizing the need for further research to refine technical aspects in this field. Additionally, we review a comparative analysis of the performance and applicability of the proposed circuit models, providing insights into their strengths and limitations. This contributes to a deeper insight of the complexities associated with modeling biological cells under external EF influences, paving the way for enhanced applications in medical and technological domains in future.
.
生物细胞具有复杂而动态的结构,需要精确的模型来全面了解,尤其是在受到电场(EF)等外部因素操纵或治疗时。这种相互作用是脉冲电场(PEF)等技术不可或缺的一部分,会引起可逆和不可逆的结构变化。我们的研究探讨了外部电场影响下生物细胞的简化和复杂等效电路模型,涵盖了从单壳到双壳配置的各种细胞结构。论文强调了电路建模面临的挑战,特别是在外部 EF 相互作用时在膜中加入可逆或不可逆孔的问题,强调了进一步研究以完善该领域技术方面的必要性。此外,我们还对所提出的电路模型的性能和适用性进行了比较分析,深入了解了这些模型的优势和局限性。这有助于更深入地了解与外部 EF 影响下的生物细胞建模相关的复杂性,为今后加强在医疗和技术领域的应用铺平道路。
{"title":"Biological Cell Response to Electric Field: A Review of Equivalent Circuit Models and Future Challenges.","authors":"MirHojjat Seyedi","doi":"10.1088/2057-1976/ad8092","DOIUrl":"https://doi.org/10.1088/2057-1976/ad8092","url":null,"abstract":"<p><p>Biological cells, characterized by complex and dynamic structures, demand precise models for comprehensive understanding, especially when subjected to external factors such as electric fields (EF) for manipulation or treatment. This interaction is integral to technologies like pulsed electric fields (PEF), inducing reversible and irreversible structural variations. Our study explores both simplified and sophisticated equivalent circuit models for biological cells under the influence of an external EF, covering diverse cell structures from single- to double-shell configurations. The paper highlights challenges in circuit modeling, specifically addressing the incorporation of reversible or irreversible pores in the membrane during external EF interactions, emphasizing the need for further research to refine technical aspects in this field. Additionally, we review a comparative analysis of the performance and applicability of the proposed circuit models, providing insights into their strengths and limitations. This contributes to a deeper insight of the complexities associated with modeling biological cells under external EF influences, paving the way for enhanced applications in medical and technological domains in future.
.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142340544","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-24DOI: 10.1088/2057-1976/ad72f7
Priyanka Gautam, Manjeet Singh
Alzheimer's disease (AD) is a progressive neurological disorder. It is identified by the gradual shrinkage of the brain and the loss of brain cells. This leads to cognitive decline and impaired social functioning, making it a major contributor to dementia. While there are no treatments to reverse AD's progression, spotting the disease's onset can have a significant impact in the medical field. Deep learning (DL) has revolutionized medical image classification by automating feature engineering, removing the requirement for human experts in feature extraction. DL-based solutions are highly accurate but demand a lot of training data, which poses a common challenge. Transfer learning (TL) has gained attention for its knack for handling limited data and expediting model training. This study uses TL to classify AD using T1-weighted 3D Magnetic Resonance Imaging (MRI) from the Alzheimer's Disease Neuroimaging (ADNI) database. Four modified pre-trained deep neural networks (DNN), VGG16, MobileNet, DenseNet121, and NASNetMobile, are trained and evaluated on the ADNI dataset. The 3-1-3 weight averaging technique and fine-tuning improve the performance of the classification models. The evaluated accuracies for AD classification are VGG16: 98.75%; MobileNet: 97.5%; DenseNet: 97.5%; and NASNetMobile: 96.25%. The receiver operating characteristic (ROC), precision-recall (PR), and Kolmogorov-Smirnov (KS) statistic plots validate the effectiveness of the modified pre-trained model. Modified VGG16 excels with area under the curve (AUC) values of 0.99 for ROC and 0.998 for PR curves. The proposed approach shows effective AD classification by achieving high accuracy using the 3-1-3 weight averaging technique and fine-tuning.
{"title":"3-1-3 Weight averaging technique-based performance evaluation of deep neural networks for Alzheimer's disease detection using structural MRI.","authors":"Priyanka Gautam, Manjeet Singh","doi":"10.1088/2057-1976/ad72f7","DOIUrl":"10.1088/2057-1976/ad72f7","url":null,"abstract":"<p><p>Alzheimer's disease (AD) is a progressive neurological disorder. It is identified by the gradual shrinkage of the brain and the loss of brain cells. This leads to cognitive decline and impaired social functioning, making it a major contributor to dementia. While there are no treatments to reverse AD's progression, spotting the disease's onset can have a significant impact in the medical field. Deep learning (DL) has revolutionized medical image classification by automating feature engineering, removing the requirement for human experts in feature extraction. DL-based solutions are highly accurate but demand a lot of training data, which poses a common challenge. Transfer learning (TL) has gained attention for its knack for handling limited data and expediting model training. This study uses TL to classify AD using T1-weighted 3D Magnetic Resonance Imaging (MRI) from the Alzheimer's Disease Neuroimaging (ADNI) database. Four modified pre-trained deep neural networks (DNN), VGG16, MobileNet, DenseNet121, and NASNetMobile, are trained and evaluated on the ADNI dataset. The 3-1-3 weight averaging technique and fine-tuning improve the performance of the classification models. The evaluated accuracies for AD classification are VGG16: 98.75%; MobileNet: 97.5%; DenseNet: 97.5%; and NASNetMobile: 96.25%. The receiver operating characteristic (ROC), precision-recall (PR), and Kolmogorov-Smirnov (KS) statistic plots validate the effectiveness of the modified pre-trained model. Modified VGG16 excels with area under the curve (AUC) values of 0.99 for ROC and 0.998 for PR curves. The proposed approach shows effective AD classification by achieving high accuracy using the 3-1-3 weight averaging technique and fine-tuning.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142046226","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-20DOI: 10.1088/2057-1976/ad6c53
Christopher M McGraw, Samvrit Rao, Shashank Manjunath, Jin Jing, M Brandon Westover
Periodic discharges (PDs) are pathologic patterns of epileptiform discharges repeating at regular intervals, commonly detected in the human electroencephalogram (EEG) signals in patients who are critically ill. The frequency and spatial extent of PDs are associated with the tendency of PDs to cause brain injury, existing automated algorithms do not quantify the frequency and spatial extent of PDs. The present study presents an algorithm for quantifying frequency and spatial extent of PDs. The algorithm quantifies the evolution of these parameters within a short (10-14 second) window, with a focus on lateralized and generalized periodic discharges. We test our algorithm on 300 'easy', 300 'medium', and 240 'hard' examples (840 total epochs) of periodic discharges as quantified by interrater consensus from human experts when analyzing the given EEG epochs. We observe 95.0% agreement with a 95% confidence interval (CI) of [94.9%, 95.1%] between algorithm outputs with reviewer clincal judgement for easy examples, 92.0% agreement (95% CI [91.9%, 92.2%]) for medium examples, and 90.4% agreement (95% CI [90.3%, 90.6%]) for hard examples. The algorithm is also computationally efficient and is able to run in 0.385 ± 0.038 seconds for a single epoch using our provided implementation of the algorithm. The results demonstrate the algorithm's effectiveness in quantifying these discharges and provide a standardized and efficient approach for PD quantification as compared to existing manual approaches.
{"title":"Automated quantification of periodic discharges in human electroencephalogram.","authors":"Christopher M McGraw, Samvrit Rao, Shashank Manjunath, Jin Jing, M Brandon Westover","doi":"10.1088/2057-1976/ad6c53","DOIUrl":"10.1088/2057-1976/ad6c53","url":null,"abstract":"<p><p>Periodic discharges (PDs) are pathologic patterns of epileptiform discharges repeating at regular intervals, commonly detected in the human electroencephalogram (EEG) signals in patients who are critically ill. The frequency and spatial extent of PDs are associated with the tendency of PDs to cause brain injury, existing automated algorithms do not quantify the frequency and spatial extent of PDs. The present study presents an algorithm for quantifying frequency and spatial extent of PDs. The algorithm quantifies the evolution of these parameters within a short (10-14 second) window, with a focus on lateralized and generalized periodic discharges. We test our algorithm on 300 'easy', 300 'medium', and 240 'hard' examples (840 total epochs) of periodic discharges as quantified by interrater consensus from human experts when analyzing the given EEG epochs. We observe 95.0% agreement with a 95% confidence interval (CI) of [94.9%, 95.1%] between algorithm outputs with reviewer clincal judgement for easy examples, 92.0% agreement (95% CI [91.9%, 92.2%]) for medium examples, and 90.4% agreement (95% CI [90.3%, 90.6%]) for hard examples. The algorithm is also computationally efficient and is able to run in 0.385 ± 0.038 seconds for a single epoch using our provided implementation of the algorithm. The results demonstrate the algorithm's effectiveness in quantifying these discharges and provide a standardized and efficient approach for PD quantification as compared to existing manual approaches.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-09-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11580140/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141900854","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-18DOI: 10.1088/2057-1976/ad6c52
Weijie Cui, Jianrong Dai
Purpose. Dual layer MLC (DMLC) has have been adopted in several commercial products and one major challenge in DMLC usage is leaf sequencing for intensity-modulated radiation therapy (IMRT). In this study we developed a leaf sequencing algorithm for IMRT with an orthogonal DMLC.Methods and Materials. This new algorithm is inspired by the algorithm proposed by Dai and Zhu for IMRT with single layer MLC (SMLC). It iterately determines a delivery segment intensity and corresponding segment shape for a given fluence matrix and leaves residual fluence matrix to following iterations. The segment intensity is determined according to complexities of residual fluence matrix when segment intensity varies from one to highest level in the matrix. The segment intensity and corresponding segment shape that result least complexity was selected. Although the algorithm framework is similar to Dai and Zhu's algorithm, this new algorithm develops complexity algorithms along with rules for determining segment leaf settings when delivered with orthogonal DMLC. This algorithm has been evaluated with 9 groups of randomly generated fluence matrices with various dimensions and intensity levels. Sixteen fluence matrices generated in Pinnacle system for two clinical IMRT examples were also used for evaluation. Statistical information of leaf sequences generated with this algorithm for both the random and clinical matrices were compared to the results of two typical algorithms for SMLC: that proposed by Dai and Zhu and that proposed by Bortfled.Results. Compared to the SMLC delivery sequences generated with Dai and Zhu's algorithm, the proposed algorithm for orthogonal DMLC delivery reduces the average number of segments by 27.7% ∼ 41.8% for 9 groups of randomly generated fluence matrices and 10.5% ∼ 41.7% for clinical ones. When comparing MU efficiency between different algorithms, it is observed that the proposed algorithm performs better than the optimal efficiency of SMLC delivery when dealing with simple fluence matrices, but slightly worse when handling complex ones.Conclusion. This new algorithm generates leaf sequences for orthogonal DMLC delivery with high delivery efficiency in terms of number of leaf segments. This algorithm has potential to work well with orthogonal DMLC for improving efficiency or quality of IMRT.
{"title":"A leaf sequencing algorithm for an orthogonal dual-layer multileaf collimator.","authors":"Weijie Cui, Jianrong Dai","doi":"10.1088/2057-1976/ad6c52","DOIUrl":"10.1088/2057-1976/ad6c52","url":null,"abstract":"<p><p><i>Purpose</i>. Dual layer MLC (DMLC) has have been adopted in several commercial products and one major challenge in DMLC usage is leaf sequencing for intensity-modulated radiation therapy (IMRT). In this study we developed a leaf sequencing algorithm for IMRT with an orthogonal DMLC.<i>Methods and Materials</i>. This new algorithm is inspired by the algorithm proposed by Dai and Zhu for IMRT with single layer MLC (SMLC). It iterately determines a delivery segment intensity and corresponding segment shape for a given fluence matrix and leaves residual fluence matrix to following iterations. The segment intensity is determined according to complexities of residual fluence matrix when segment intensity varies from one to highest level in the matrix. The segment intensity and corresponding segment shape that result least complexity was selected. Although the algorithm framework is similar to Dai and Zhu's algorithm, this new algorithm develops complexity algorithms along with rules for determining segment leaf settings when delivered with orthogonal DMLC. This algorithm has been evaluated with 9 groups of randomly generated fluence matrices with various dimensions and intensity levels. Sixteen fluence matrices generated in Pinnacle system for two clinical IMRT examples were also used for evaluation. Statistical information of leaf sequences generated with this algorithm for both the random and clinical matrices were compared to the results of two typical algorithms for SMLC: that proposed by Dai and Zhu and that proposed by Bortfled.<i>Results</i>. Compared to the SMLC delivery sequences generated with Dai and Zhu's algorithm, the proposed algorithm for orthogonal DMLC delivery reduces the average number of segments by 27.7% ∼ 41.8% for 9 groups of randomly generated fluence matrices and 10.5% ∼ 41.7% for clinical ones. When comparing MU efficiency between different algorithms, it is observed that the proposed algorithm performs better than the optimal efficiency of SMLC delivery when dealing with simple fluence matrices, but slightly worse when handling complex ones.<i>Conclusion</i>. This new algorithm generates leaf sequences for orthogonal DMLC delivery with high delivery efficiency in terms of number of leaf segments. This algorithm has potential to work well with orthogonal DMLC for improving efficiency or quality of IMRT.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141900853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-17DOI: 10.1088/2057-1976/ad7bc1
Gerhard Hilgers,Miriam Schwarze,Hans Rabus
At the Heidelberg Ion-Beam Therapy Center, the track structure of carbon ions of therapeutic energy after penetrating layers of simulated tissue was investigated for the first time. Measurements were conducted with carbon ion beams of different energies and polymethyl methacrylate (PMMA) absorbers of different thicknesses to realize different depths in the phantom along the pristine Bragg peak. Ionization cluster size (ICS) distributions resulting from the mixed radiation field behind the PMMA absorbers were measured using an ion-counting nanodosimeter. Two different measurements were carried out: (i) variation of the PMMA absorber thickness with constant carbon ion beam energy and (ii) combined variation of PMMA absorber thickness and carbon ion beam energy such that the kinetic energy of the carbon ions in the target volume is constant. The data analysis revealed unexpectedly high mean ICS values compared to stopping power calculations and the data measured at lower energies in earlier work. This suggests that in the measurements the carbon ion kinetic energies behind the PMMA absorber may have deviated considerably from the expected values obtained by the calculations. In addition, the results indicate the presence of a marked contribution of nuclear fragments to the measured ICS distributions, especially if the carbon ion does not cross the target volume.
{"title":"Nanodosimetric investigation of the track structure of therapeutic carbon ion radiation. Part 1: measurement of ionization cluster size distributions.","authors":"Gerhard Hilgers,Miriam Schwarze,Hans Rabus","doi":"10.1088/2057-1976/ad7bc1","DOIUrl":"https://doi.org/10.1088/2057-1976/ad7bc1","url":null,"abstract":"At the Heidelberg Ion-Beam Therapy Center, the track structure of carbon ions of therapeutic energy after penetrating layers of simulated tissue was investigated for the first time. Measurements were conducted with carbon ion beams of different energies and polymethyl methacrylate (PMMA) absorbers of different thicknesses to realize different depths in the phantom along the pristine Bragg peak. Ionization cluster size (ICS) distributions resulting from the mixed radiation field behind the PMMA absorbers were measured using an ion-counting nanodosimeter. Two different measurements were carried out: (i) variation of the PMMA absorber thickness with constant carbon ion beam energy and (ii) combined variation of PMMA absorber thickness and carbon ion beam energy such that the kinetic energy of the carbon ions in the target volume is constant. The data analysis revealed unexpectedly high mean ICS values compared to stopping power calculations and the data measured at lower energies in earlier work. This suggests that in the measurements the carbon ion kinetic energies behind the PMMA absorber may have deviated considerably from the expected values obtained by the calculations. In addition, the results indicate the presence of a marked contribution of nuclear fragments to the measured ICS distributions, especially if the carbon ion does not cross the target volume.","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":"51 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142253033","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
This study discussed comparing result accuracy and time cost under different tally methods using MCNP6 for a novel transmission X-ray tube which was designed for the Auger electron yield with specific material (eg. iodine). The assessment included photon spectrum, percent depth dose, mass-energy absorption coefficient corresponding to air and water, and figure of merit comparison. The mean energy of in-air phantom was from 41.8 keV (0 mm) to 40.9 keV (100 mm), and the mean energy of in-water phantom was from 41.41 keV (0 mm) to 45.2 keV (100 mm). The specific dose conversion factors based mass-energy absorption coefficient corresponding to different materials was established and the difference was less than 2% for the dose conversion of FMESH comparing to measurement data. FMESH had better figure of merit (FOM) than the F6 tally for the dose parameter assessment, which mean the dose calculation that focused on the superficial region could be assessed with more calculation efficiency by FMESH tally for this novel transmission X-ray tube. The results of this study could help develop treatment planning system (TPS) to quickly obtain the calculated data for phase space data establishment and heterogeneous correction under different physical condition settings.
.
本研究讨论了使用 MCNP6 对新型透射 X 射线管进行不同统计方法下的结果准确性和时间成本比较,该 X 射线管是为特定材料(如碘)的奥格电子产率而设计的。评估内容包括光子光谱、深度剂量百分比、与空气和水相对应的质能吸收系数以及优点比较。空气中模型的平均能量为 41.8 keV(0 毫米)至 40.9 keV(100 毫米),水中模型的平均能量为 41.41 keV(0 毫米)至 45.2 keV(100 毫米)。根据不同材料的质能吸收系数确定了具体的剂量换算系数,与测量数据相比,FMESH 的剂量换算系数相差不到 2%。在剂量参数评估方面,FMESH 比 F6 计数值具有更好的优点(FOM),这意味着对于这种新型透射 X 射线管,FMESH 计数值能以更高的计算效率评估侧重于表层区域的剂量计算。本研究的结果有助于开发治疗计划系统(TPS),在不同的物理条件设置下快速获得相空间数据建立和异质校正的计算数据。
{"title":"Comparison of monte carlo tally techniques for dosimetry in a transmission-type X-ray tube.","authors":"Chen-Ju Feng,Chin-Hui Wu,Chin-Hsiung Lin,Shu-Wei Wu,Shih-Yong Luo,Ya-Ru Yang,Chao-Hua Lee,Shao-Chun Tseng,Shen-Hao Lee,Shih-Ming Hsu,Chin-Hui Wu","doi":"10.1088/2057-1976/ad7bbf","DOIUrl":"https://doi.org/10.1088/2057-1976/ad7bbf","url":null,"abstract":"This study discussed comparing result accuracy and time cost under different tally methods using MCNP6 for a novel transmission X-ray tube which was designed for the Auger electron yield with specific material (eg. iodine). The assessment included photon spectrum, percent depth dose, mass-energy absorption coefficient corresponding to air and water, and figure of merit comparison. The mean energy of in-air phantom was from 41.8 keV (0 mm) to 40.9 keV (100 mm), and the mean energy of in-water phantom was from 41.41 keV (0 mm) to 45.2 keV (100 mm). The specific dose conversion factors based mass-energy absorption coefficient corresponding to different materials was established and the difference was less than 2% for the dose conversion of FMESH comparing to measurement data. FMESH had better figure of merit (FOM) than the F6 tally for the dose parameter assessment, which mean the dose calculation that focused on the superficial region could be assessed with more calculation efficiency by FMESH tally for this novel transmission X-ray tube. The results of this study could help develop treatment planning system (TPS) to quickly obtain the calculated data for phase space data establishment and heterogeneous correction under different physical condition settings.
.","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":"211 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-09-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142253034","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Low-frequency sonophoresis has emerged as a promising minimally invasive transdermal drug delivery method. However, effectively inducing cavitation on the skin surface with a compact, low-frequency ultrasound transducer poses a significant challenge. This paper presents a modified design of a low-frequency ultrasound transducer capable of generating ultrasound cavitation on the skin surfaces. The transducer comprises a piezoelectric ceramic disk and a bowl-shaped acoustic resonator. A conical slit structure was incorporated into the modified transducer design to amplify vibration displacement and enhance the maximum sound pressure. The FEM-based simulation results confirmed that the maximum sound pressure at the resonance frequency of 78 kHz was increased by 1.9 times that of the previous design. Ultrasound cavitation could be experimentally observed on the gel surface. Moreover, 3 min of ultrasound treatment significantly improved the caffeine permeability across an artificial membrane. These results demonstrated that this transducer holds promise for enhancing drug permeation by generating ultrasound cavitation on the skin surface.
{"title":"A compact and low-frequency drive ultrasound transducer for facilitating cavitation-assisted drug permeation via skin.","authors":"Shinya Yamamoto, Naohiro Sugita, Keita Tomioka, Tadahiko Shinshi","doi":"10.1088/2057-1976/ad7596","DOIUrl":"10.1088/2057-1976/ad7596","url":null,"abstract":"<p><p>Low-frequency sonophoresis has emerged as a promising minimally invasive transdermal drug delivery method. However, effectively inducing cavitation on the skin surface with a compact, low-frequency ultrasound transducer poses a significant challenge. This paper presents a modified design of a low-frequency ultrasound transducer capable of generating ultrasound cavitation on the skin surfaces. The transducer comprises a piezoelectric ceramic disk and a bowl-shaped acoustic resonator. A conical slit structure was incorporated into the modified transducer design to amplify vibration displacement and enhance the maximum sound pressure. The FEM-based simulation results confirmed that the maximum sound pressure at the resonance frequency of 78 kHz was increased by 1.9 times that of the previous design. Ultrasound cavitation could be experimentally observed on the gel surface. Moreover, 3 min of ultrasound treatment significantly improved the caffeine permeability across an artificial membrane. These results demonstrated that this transducer holds promise for enhancing drug permeation by generating ultrasound cavitation on the skin surface.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142103976","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-13DOI: 10.1088/2057-1976/ad7594
Souha Nemri, Luc Duong
Echocardiography is one the most commonly used imaging modalities for the diagnosis of congenital heart disease. Echocardiographic image analysis is crucial to obtaining accurate cardiac anatomy information. Semantic segmentation models can be used to precisely delimit the borders of the left ventricle, and allow an accurate and automatic identification of the region of interest, which can be extremely useful for cardiologists. In the field of computer vision, convolutional neural network (CNN) architectures remain dominant. Existing CNN approaches have proved highly efficient for the segmentation of various medical images over the past decade. However, these solutions usually struggle to capture long-range dependencies, especially when it comes to images with objects of different scales and complex structures. In this study, we present an efficient method for semantic segmentation of echocardiographic images that overcomes these challenges by leveraging the self-attention mechanism of the Transformer architecture. The proposed solution extracts long-range dependencies and efficiently processes objects at different scales, improving performance in a variety of tasks. We introduce Shifted Windows Transformer models (Swin Transformers), which encode both the content of anatomical structures and the relationship between them. Our solution combines the Swin Transformer and U-Net architectures, producing a U-shaped variant. The validation of the proposed method is performed with the EchoNet-Dynamic dataset used to train our model. The results show an accuracy of 0.97, a Dice coefficient of 0.87, and an Intersection over union (IoU) of 0.78. Swin Transformer models are promising for semantically segmenting echocardiographic images and may help assist cardiologists in automatically analyzing and measuring complex echocardiographic images.
{"title":"Automatic segmentation of echocardiographic images using a shifted windows vision transformer architecture.","authors":"Souha Nemri, Luc Duong","doi":"10.1088/2057-1976/ad7594","DOIUrl":"10.1088/2057-1976/ad7594","url":null,"abstract":"<p><p>Echocardiography is one the most commonly used imaging modalities for the diagnosis of congenital heart disease. Echocardiographic image analysis is crucial to obtaining accurate cardiac anatomy information. Semantic segmentation models can be used to precisely delimit the borders of the left ventricle, and allow an accurate and automatic identification of the region of interest, which can be extremely useful for cardiologists. In the field of computer vision, convolutional neural network (CNN) architectures remain dominant. Existing CNN approaches have proved highly efficient for the segmentation of various medical images over the past decade. However, these solutions usually struggle to capture long-range dependencies, especially when it comes to images with objects of different scales and complex structures. In this study, we present an efficient method for semantic segmentation of echocardiographic images that overcomes these challenges by leveraging the self-attention mechanism of the Transformer architecture. The proposed solution extracts long-range dependencies and efficiently processes objects at different scales, improving performance in a variety of tasks. We introduce Shifted Windows Transformer models (Swin Transformers), which encode both the content of anatomical structures and the relationship between them. Our solution combines the Swin Transformer and U-Net architectures, producing a U-shaped variant. The validation of the proposed method is performed with the EchoNet-Dynamic dataset used to train our model. The results show an accuracy of 0.97, a Dice coefficient of 0.87, and an Intersection over union (IoU) of 0.78. Swin Transformer models are promising for semantically segmenting echocardiographic images and may help assist cardiologists in automatically analyzing and measuring complex echocardiographic images.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142103977","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}