首页 > 最新文献

Biomedical Physics & Engineering Express最新文献

英文 中文
PSF and MTF from a bar pattern in digital mammography. 数字乳腺 X 射线摄影中条形图案的 PSF 和 MTF。
IF 1.4 Q2 Nursing Pub Date : 2024-06-20 DOI: 10.1088/2057-1976/ad5296
F R Lozano, Daniel Rojo, L C Martínez, Carlos Ramon

Background.The MTF has difficulties being determined (according to the provisions of the IEC standards) in the hospital setting due to the lack of resources.Purpose.The objective of this work is to propose a quantitative method for obtaining the point spread function (PSF) and the modulation transfer function (MTF) of a digital mammography system from an image of a bar pattern.Methods.The method is based on the measurement of the contrast transfer function (CTF) of the system over the image of the bar pattern. In addition, a theoretical model for thePSFis proposed, from which the theoreticalCTFof the system is obtained by means of convolution with a square wave (mathematical simulation of the bar pattern). Through an iterative process, the free parameters of thePSFmodel are varied until the experimentalCTFcoincides with the one calculated by convolution. Once thePSFof the system is obtained, we calculate theMTFby means of its Fourier transform. TheMTFcalculated from the modelPSFhave been compared with those calculated from an image of a 65μm diameter gold wire using an oversampling process.Results.TheCTFhas been calculated for three digital mammographic systems (DMS 1, DMS 2 and DMS 3), no differences of more than 5 % were found with the CTF obtained with the PSF model. The comparison of theMTFshows us the goodness of thePSFmodel.Conclusions.The proposed method for obtainingPSFandMTFis a simple and accessible method, which does not require a complex configuration or the use of phantoms that are difficult to access in the hospital world. In addition, it can be used to calculate other magnitudes of interest such as the normalized noise power spectrum (NNPS) and the detection quantum efficiency (DQE).

背景:目的:这项工作的目的是提出一种定量方法,从条形图像中获取数字乳腺 X 射线摄影系统的点扩散函数(PSF)和调制传递函数(MTF):方法:该方法以测量系统在条形图像上的对比度传递函数(CTF)为基础。此外,还提出了 PSF 的理论模型,并通过与方波的卷积(条形图案的数学模拟)获得了系统的理论 CTF。通过迭代过程,改变 PSF 模型的自由参数,直到实验 CTF 与卷积计算出的 CTF 相吻合。获得系统的 PSF 后,我们通过其傅立叶变换计算 MTF。根据模型 PSF 计算出的 MTF 与使用过采样过程从直径为 65 um 的金线图像中计算出的 MTF 进行了比较:为三个数字乳腺 X 射线摄影系统(DMS 1、DMS 2 和 DMS 3)计算出的 CTF 与 PSF 模型计算出的 CTF 差异不超过 5%。MTF 的比较显示了 PSF 模型的优越性:结论:所提出的 PSF 和 MTF 获取方法是一种简单易行的方法,不需要复杂的配置,也不需要使用在医院中很难获得的模型。此外,它还可用于计算归一化噪声功率谱(NNPS)和探测量子效率(DQE)等其他相关量值。
{"title":"PSF and MTF from a bar pattern in digital mammography.","authors":"F R Lozano, Daniel Rojo, L C Martínez, Carlos Ramon","doi":"10.1088/2057-1976/ad5296","DOIUrl":"10.1088/2057-1976/ad5296","url":null,"abstract":"<p><p><i>Background.</i>The MTF has difficulties being determined (according to the provisions of the IEC standards) in the hospital setting due to the lack of resources.<i>Purpose.</i>The objective of this work is to propose a quantitative method for obtaining the point spread function (<i>PSF</i>) and the modulation transfer function (<i>MTF</i>) of a digital mammography system from an image of a bar pattern.<i>Methods.</i>The method is based on the measurement of the contrast transfer function (<i>CTF</i>) of the system over the image of the bar pattern. In addition, a theoretical model for the<i>PSF</i>is proposed, from which the theoretical<i>CTF</i>of the system is obtained by means of convolution with a square wave (mathematical simulation of the bar pattern). Through an iterative process, the free parameters of the<i>PSF</i>model are varied until the experimental<i>CTF</i>coincides with the one calculated by convolution. Once the<i>PSF</i>of the system is obtained, we calculate the<i>MTF</i>by means of its Fourier transform. The<i>MTF</i>calculated from the model<i>PSF</i>have been compared with those calculated from an image of a 65<i>μ</i>m diameter gold wire using an oversampling process.<i>Results.</i>The<i>CTF</i>has been calculated for three digital mammographic systems (DMS 1, DMS 2 and DMS 3), no differences of more than 5 % were found with the CTF obtained with the PSF model. The comparison of the<i>MTF</i>shows us the goodness of the<i>PSF</i>model.<i>Conclusions.</i>The proposed method for obtaining<i>PSF</i>and<i>MTF</i>is a simple and accessible method, which does not require a complex configuration or the use of phantoms that are difficult to access in the hospital world. In addition, it can be used to calculate other magnitudes of interest such as the normalized noise power spectrum (<i>NNPS</i>) and the detection quantum efficiency (<i>DQE</i>).</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141183851","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Gait dynamic stability evaluation in patients undergoing hip joint fractures - tools to measure rehabilitation effectiveness. 髋关节骨折患者步态动态稳定性评估--衡量康复效果的工具。
IF 1.4 Q2 Nursing Pub Date : 2024-06-20 DOI: 10.1088/2057-1976/ad567b
Imran Mahmood, Hafiz Farhan Maqbool, Anam Raza, Nadeem Iqbal, Abbas A Dehghani-Sanij

A hip joint fracture includes a break in the thigh (femur) or coxa bone near the pelvis. During fracture healing, stability and weight bearing by the affected limb are key indicators to measure patients' improvement. Conventionally, the rehabilitation effectiveness is monitored through clinical examinations, patients' feedback, and few studies also reported instrumented gait evaluations. A gap remains there to numerically quantify the recovery in patients' stability and weight bearing in response to rehabilitation therapies. This study introduces Nyquist and Bode (N&B) methods to analyse the instrumented gait signals further and evaluate gait stability in hip fracture patients during weight loading and unloading transitions. The centre of pressure (CoP) data was recorded using force plates for conditions: coxa hip fracture (HC), femur hip fracture (HF), and normal hip joint (NH). The time rate of CoP signals illustrated two major impulses during the loading and unloading phases which were modelled in time and frequency domains. The frequency models were further analysed by applying N&B methods and stability margins were computed for both impaired and healthy conditions. Results illustrated a significant decrease (Kruskal-Wallis's test, p < 0.001) in the intralimb walking stability of both fracture conditions. Further, Spearman's correlation between CoP velocities of fractured and intact limbs illustrated significant interlimb dependencies to maintain walking stability (p < 0.001) during weight loading and unloading transitions. Overall, the HF impairment illustrated the least intralimb walking stability and relatively greater interlimb dependencies. Clinically, these methods and findings are important to measure the recovery in patients undergoing rehabilitation after a hip joint or other lower limb impairments.

髋关节骨折包括大腿骨(股骨)或骨盆附近的髋骨骨折。在骨折愈合期间,患肢的稳定性和负重能力是衡量患者康复情况的关键指标。传统上,康复效果是通过临床检查和患者反馈来监测的,也有少数研究报告了仪器步态评估。在量化康复疗法对患者稳定性和负重能力恢复的影响方面仍存在差距。本研究引入奈奎斯特和博德(N&B)方法,进一步分析仪器步态信号,评估髋部骨折患者在负重和卸载转换过程中的步态稳定性。在髋关节骨折(HC)、股骨髋关节骨折(HF)和正常髋关节(NH)的情况下,使用测力板记录压力中心(CoP)数据。CoP 信号的时间率显示了加载和卸载阶段的两个主要脉冲,并在时域和频域对其进行了建模。应用 N&B 方法对频率模型进行了进一步分析,并计算了受损和健康状况下的稳定性裕度。结果表明,在加载和卸载阶段,振动频率明显降低(Kruskal-Wallis 检验,p<0.05)。
{"title":"Gait dynamic stability evaluation in patients undergoing hip joint fractures - tools to measure rehabilitation effectiveness.","authors":"Imran Mahmood, Hafiz Farhan Maqbool, Anam Raza, Nadeem Iqbal, Abbas A Dehghani-Sanij","doi":"10.1088/2057-1976/ad567b","DOIUrl":"10.1088/2057-1976/ad567b","url":null,"abstract":"<p><p>A hip joint fracture includes a break in the thigh (femur) or coxa bone near the pelvis. During fracture healing, stability and weight bearing by the affected limb are key indicators to measure patients' improvement. Conventionally, the rehabilitation effectiveness is monitored through clinical examinations, patients' feedback, and few studies also reported instrumented gait evaluations. A gap remains there to numerically quantify the recovery in patients' stability and weight bearing in response to rehabilitation therapies. This study introduces Nyquist and Bode (N&B) methods to analyse the instrumented gait signals further and evaluate gait stability in hip fracture patients during weight loading and unloading transitions. The centre of pressure (CoP) data was recorded using force plates for conditions: coxa hip fracture (HC), femur hip fracture (HF), and normal hip joint (NH). The time rate of CoP signals illustrated two major impulses during the loading and unloading phases which were modelled in time and frequency domains. The frequency models were further analysed by applying N&B methods and stability margins were computed for both impaired and healthy conditions. Results illustrated a significant decrease (Kruskal-Wallis's test, p < 0.001) in the intralimb walking stability of both fracture conditions. Further, Spearman's correlation between CoP velocities of fractured and intact limbs illustrated significant interlimb dependencies to maintain walking stability (p < 0.001) during weight loading and unloading transitions. Overall, the HF impairment illustrated the least intralimb walking stability and relatively greater interlimb dependencies. Clinically, these methods and findings are important to measure the recovery in patients undergoing rehabilitation after a hip joint or other lower limb impairments.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141305312","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An extensive analysis of artificial intelligence and segmentation methods transforming cancer recognition in medical imaging. 广泛分析人工智能和分割方法,改变医学成像中的癌症识别。
IF 1.3 Q2 Nursing Pub Date : 2024-06-18 DOI: 10.1088/2057-1976/ad555b
K Ramalakshmi, V Srinivasa Raghavan, Sivakumar Rajagopal, L Krishna Kumari, G Theivanathan, Madhusudan B Kulkarni, Harshit Poddar

Recent advancements in computational intelligence, deep learning, and computer-aided detection have had a significant impact on the field of medical imaging. The task of image segmentation, which involves accurately interpreting and identifying the content of an image, has garnered much attention. The main objective of this task is to separate objects from the background, thereby simplifying and enhancing the significance of the image. However, existing methods for image segmentation have their limitations when applied to certain types of images. This survey paper aims to highlight the importance of image segmentation techniques by providing a thorough examination of their advantages and disadvantages. The accurate detection of cancer regions in medical images is crucial for ensuring effective treatment. In this study, we have also extensive analysis of Computer-Aided Diagnosis (CAD) systems for cancer identification, with a focus on recent research advancements. The paper critically assesses various techniques for cancer detection and compares their effectiveness. Convolutional neural networks (CNNs) have attracted particular interest due to their ability to segment and classify medical images in large datasets, thanks to their capacity for self- learning and decision-making.

计算智能、深度学习和计算机辅助检测领域的最新进展对医学成像领域产生了重大影响。图像分割任务涉及准确解释和识别图像内容,因此备受关注。这项任务的主要目的是将物体从背景中分离出来,从而简化和增强图像的意义。然而,现有的图像分割方法在应用于某些类型的图像时有其局限性。本调查报告旨在通过对图像分割技术的优缺点进行深入研究,强调图像分割技术的重要性。准确检测医学图像中的癌症区域对于确保有效治疗至关重要。在本研究中,我们还广泛分析了用于癌症识别的计算机辅助诊断 (CAD) 系统,重点关注近期的研究进展。本文对各种癌症检测技术进行了批判性评估,并比较了它们的有效性。卷积神经网络(CNN)具有自我学习和决策能力,能够对大型数据集中的医学图像进行分割和分类,因此特别引人关注。
{"title":"An extensive analysis of artificial intelligence and segmentation methods transforming cancer recognition in medical imaging.","authors":"K Ramalakshmi, V Srinivasa Raghavan, Sivakumar Rajagopal, L Krishna Kumari, G Theivanathan, Madhusudan B Kulkarni, Harshit Poddar","doi":"10.1088/2057-1976/ad555b","DOIUrl":"10.1088/2057-1976/ad555b","url":null,"abstract":"<p><p>Recent advancements in computational intelligence, deep learning, and computer-aided detection have had a significant impact on the field of medical imaging. The task of image segmentation, which involves accurately interpreting and identifying the content of an image, has garnered much attention. The main objective of this task is to separate objects from the background, thereby simplifying and enhancing the significance of the image. However, existing methods for image segmentation have their limitations when applied to certain types of images. This survey paper aims to highlight the importance of image segmentation techniques by providing a thorough examination of their advantages and disadvantages. The accurate detection of cancer regions in medical images is crucial for ensuring effective treatment. In this study, we have also extensive analysis of Computer-Aided Diagnosis (CAD) systems for cancer identification, with a focus on recent research advancements. The paper critically assesses various techniques for cancer detection and compares their effectiveness. Convolutional neural networks (CNNs) have attracted particular interest due to their ability to segment and classify medical images in large datasets, thanks to their capacity for self- learning and decision-making.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2024-06-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141287680","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Feasibility biomechanical study of injectable Biphasic Calcium Phosphate bone cement augmentation of the proximal femoral nail antirotation (PFNA) for the treatment of two intertrochanteric fractures using cadaveric femur. 利用尸体股骨进行可注射双相磷酸钙骨水泥增强股骨近端抗旋转钉(PFNA)治疗两处转子间骨折的可行性生物力学研究。
IF 1.4 Q2 Nursing Pub Date : 2024-06-13 DOI: 10.1088/2057-1976/ad4e3c
Ponthep Tangkanjanavelukul, Paritat Thaitalay, Sawitri Srisuwan, Pongpayap Petchwisai, Pornsak Thasanaraphan, Yotakarn Saramas, Kittiphong Nimarkorn, Woranat Warojananulak, Chaosuan Kanchanomai, Sirirat Tubsungnoen Rattanachan

This study evaluated the feasibility of the femoral bone after fixation using biphasic calcium phosphate cement-augmentation of the proximal femoral nail antirotation (PFNA) compared with PFNA without cement. This study presented to compare the stiffness, fatigue testing, and compressive strength between stable (AO31-A2.1) and unstable (AO31-A3.3) intertrochanteric fractures treated by cement augmented PFNA of the cadaveric femoral. Biphasic calcium phosphate cement was injected to align and compatible with PFNA and the reconstructive procedure was monitored the cement placement using x-ray imaging during operation. The testing demonstrated that the cement could be injected through a small needle (13 G, 16 cm length, 1.8 mm inner diameter) within a suitable operating time. The feasibility study of the biomechanical testing was divided into three tests: stiffness test, fatigue cyclic load, and compression test. The results showed that the cement-augmented specimens exhibited higher stiffness than the control specimens without cement. The cement-augmented specimens also showed lower strain energy during the fatigue test, resulting in higher compressive strength (4730.7 N) compared to the control specimens (3857.4 N). There is a correlation between BMD and fracture load and the increase in compression load of the cement-augmented femoral compared to the controls as well as an increase in strain energy of fatigue cyclic testing was found. Biphasic calcium phosphate cement-augmented of the PFNA biomechanically enhanced the cut-out resistance in intertrochanteric fracture. This procedure is especially efficient for unstable intertrochanteric fracture suggesting the potential benefits of using biphasic calcium phosphate cement in medical applications.

本研究评估了使用双相磷酸钙骨水泥固定股骨近端抗旋转钉(PFNA)与不使用骨水泥固定股骨近端抗旋转钉(PFNA)后股骨头的可行性。本研究对尸体股骨的稳定型(AO31-A2.1)和不稳定型(AO31-A3.3)转子间骨折采用骨水泥增强 PFNA 治疗后的硬度、疲劳测试和抗压强度进行了比较。注射双相磷酸钙骨水泥,使其与 PFNA 对齐和兼容,并在手术过程中使用 X 射线成像监控骨水泥的置入情况。测试表明,骨水泥可在适当的手术时间内通过小针(13G,16 厘米长,1.8 毫米内径)注入。生物力学测试的可行性研究分为三项测试:刚度测试、疲劳循环载荷和压缩测试。结果表明,与未添加水泥的对照试样相比,添加水泥的试样具有更高的刚度。在疲劳试验中,水泥增强试样也显示出较低的应变能,从而使抗压强度(4730.7 牛顿)高于对照试样(3857.4 牛顿)。BMD 与骨折载荷之间存在相关性,与对照组相比,骨水泥增强股骨的压缩载荷增加了,疲劳循环测试的应变能也增加了。PFNA的双相磷酸钙骨水泥增强了转子间骨折的切口阻力。这种方法尤其适用于不稳定的转子间骨折,这表明在医疗应用中使用双相磷酸钙水泥具有潜在的益处。
{"title":"Feasibility biomechanical study of injectable Biphasic Calcium Phosphate bone cement augmentation of the proximal femoral nail antirotation (PFNA) for the treatment of two intertrochanteric fractures using cadaveric femur.","authors":"Ponthep Tangkanjanavelukul, Paritat Thaitalay, Sawitri Srisuwan, Pongpayap Petchwisai, Pornsak Thasanaraphan, Yotakarn Saramas, Kittiphong Nimarkorn, Woranat Warojananulak, Chaosuan Kanchanomai, Sirirat Tubsungnoen Rattanachan","doi":"10.1088/2057-1976/ad4e3c","DOIUrl":"10.1088/2057-1976/ad4e3c","url":null,"abstract":"<p><p>This study evaluated the feasibility of the femoral bone after fixation using biphasic calcium phosphate cement-augmentation of the proximal femoral nail antirotation (PFNA) compared with PFNA without cement. This study presented to compare the stiffness, fatigue testing, and compressive strength between stable (AO31-A2.1) and unstable (AO31-A3.3) intertrochanteric fractures treated by cement augmented PFNA of the cadaveric femoral. Biphasic calcium phosphate cement was injected to align and compatible with PFNA and the reconstructive procedure was monitored the cement placement using x-ray imaging during operation. The testing demonstrated that the cement could be injected through a small needle (13 G, 16 cm length, 1.8 mm inner diameter) within a suitable operating time. The feasibility study of the biomechanical testing was divided into three tests: stiffness test, fatigue cyclic load, and compression test. The results showed that the cement-augmented specimens exhibited higher stiffness than the control specimens without cement. The cement-augmented specimens also showed lower strain energy during the fatigue test, resulting in higher compressive strength (4730.7 N) compared to the control specimens (3857.4 N). There is a correlation between BMD and fracture load and the increase in compression load of the cement-augmented femoral compared to the controls as well as an increase in strain energy of fatigue cyclic testing was found. Biphasic calcium phosphate cement-augmented of the PFNA biomechanically enhanced the cut-out resistance in intertrochanteric fracture. This procedure is especially efficient for unstable intertrochanteric fracture suggesting the potential benefits of using biphasic calcium phosphate cement in medical applications.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141074555","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Optimization of contrast and dose in x-ray phase-contrast tomography with a Talbot-Lau interferometer. 利用塔尔博特-劳干涉仪优化 X 射线相位对比断层摄影的对比度和剂量。
IF 1.4 Q2 Nursing Pub Date : 2024-06-13 DOI: 10.1088/2057-1976/ad5206
Henrik Mäkinen, Heikki Suhonen, Teemu Siiskonen, Christian David, Simo Huotari

X-ray phase-contrast imaging has become a valuable tool for biomedical research due to its improved contrast abilities over regular attenuation-based imaging. The recently emerged Talbot-Lau interferometer can provide quantitative attenuation, phase-contrast and dark-field image data, even with low-brilliance x-ray tube sources. Thus, it has become a valid option for clinical environments. In this study, we analyze the effects of x-ray tube voltage and total number of images on the contrast-to-noise ratio (CNR) and dose-weighted CNR (CNRD) calculated from tomographic transmission and phase-contrast data of a phantom sample. Constant counting statistics regardless of the voltage was ensured by adjusting the image exposure time for each voltage setting. The results indicate that the x-ray tube voltage has a clear effect on both image contrast and noise. This effect is amplified in the case of phase-contrast images, which is explained by the polychromatic x-ray spectrum and the dependence of interferometer visibility on the spectrum. CNRD is additionally affected by the total imaging time. While submerging the sample into a water container effectively reduces image artefacts and improves the CNR, the additional attenuation of the water must be compensated with a longer exposure time. This reduces dose efficiency. Both the CNR and CNRD are higher in the phase-contrast images compared to transmission images. For transmission images, and phase-contrast images without the water container, CNRD can be increased by using higher tube voltages (in combination with a lower exposure time). For phase-contrast images with the water container, CNRD is increased with lower tube voltages. In general, the CNRD does not strongly depend on the number of tomographic angles or phase steps used.

与普通的衰减成像相比,X 射线相位对比成像具有更好的对比能力,因此已成为生物医学研究的重要工具。最近出现的塔尔博特-劳干涉仪可以提供定量的衰减、相位对比和暗场图像数据,即使使用的是低亮度 X 射线管源。因此,它已成为临床环境中的有效选择。在这项研究中,我们分析了 X 射线管电压和图像总数对对比度-噪声比(CNR)和根据模型透射和相位对比数据计算的剂量加权 CNR(CNRD)的影响。结果表明,X 射线管电压对图像对比度和噪声都有明显影响。多色 X 射线光谱和干涉仪能见度与光谱的关系解释了这一点。此外,CNRD 还受到总成像时间的影响。虽然将样品浸没在水容器中可以有效减少图像伪影并提高 CNR,但必须用更长的曝光时间来补偿水的额外衰减。这就降低了剂量效率。与透射图像相比,相位对比图像的 CNR 和 CNRD 都更高。对于透射图像和不含水容器的相位对比图像,可以通过使用较高的管电压(结合较短的曝光时间)来提高 CNRD。对于带水容器的相位对比图像,使用较低的显像管电压可提高 CNRD。一般来说,CNRD 与所使用的断层角度或相位阶跃的数量关系不大。
{"title":"Optimization of contrast and dose in x-ray phase-contrast tomography with a Talbot-Lau interferometer.","authors":"Henrik Mäkinen, Heikki Suhonen, Teemu Siiskonen, Christian David, Simo Huotari","doi":"10.1088/2057-1976/ad5206","DOIUrl":"10.1088/2057-1976/ad5206","url":null,"abstract":"<p><p>X-ray phase-contrast imaging has become a valuable tool for biomedical research due to its improved contrast abilities over regular attenuation-based imaging. The recently emerged Talbot-Lau interferometer can provide quantitative attenuation, phase-contrast and dark-field image data, even with low-brilliance x-ray tube sources. Thus, it has become a valid option for clinical environments. In this study, we analyze the effects of x-ray tube voltage and total number of images on the contrast-to-noise ratio (CNR) and dose-weighted CNR (CNRD) calculated from tomographic transmission and phase-contrast data of a phantom sample. Constant counting statistics regardless of the voltage was ensured by adjusting the image exposure time for each voltage setting. The results indicate that the x-ray tube voltage has a clear effect on both image contrast and noise. This effect is amplified in the case of phase-contrast images, which is explained by the polychromatic x-ray spectrum and the dependence of interferometer visibility on the spectrum. CNRD is additionally affected by the total imaging time. While submerging the sample into a water container effectively reduces image artefacts and improves the CNR, the additional attenuation of the water must be compensated with a longer exposure time. This reduces dose efficiency. Both the CNR and CNRD are higher in the phase-contrast images compared to transmission images. For transmission images, and phase-contrast images without the water container, CNRD can be increased by using higher tube voltages (in combination with a lower exposure time). For phase-contrast images with the water container, CNRD is increased with lower tube voltages. In general, the CNRD does not strongly depend on the number of tomographic angles or phase steps used.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141178534","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effective brain connectivity related to non-painful thermal stimuli using EEG. 利用脑电图研究与非疼痛性热刺激相关的有效脑连接。
IF 1.4 Q2 Nursing Pub Date : 2024-06-13 DOI: 10.1088/2057-1976/ad53ce
Diana Carolina Santos Cuevas, Roberto Esteban Campos Ruiz, Denny Daniel Collina, Carlos Julio Tierra Criollo

Understanding the brain response to thermal stimuli is crucial in the sensory experience. This study focuses on non-painful thermal stimuli, which are sensations induced by temperature changes without causing discomfort. These stimuli are transmitted to the central nervous system through specific nerve fibers and are processed in various regions of the brain, including the insular cortex, the prefrontal cortex, and anterior cingulate cortex. Despite the prevalence of studies on painful stimuli, non-painful thermal stimuli have been less explored. This research aims to bridge this gap by investigating brain functional connectivity during the perception of non-painful warm and cold stimuli using electroencephalography (EEG) and the partial directed coherence technique (PDC). Our results demonstrate a clear contrast in the direction of information flow between warm and cold stimuli, particularly in the theta and alpha frequency bands, mainly in frontal and temporal regions. The use of PDC highlights the complexity of brain connectivity during these stimuli and reinforces the existence of different pathways in the brain to process different types of non-painful warm and cold stimuli.

了解大脑对热刺激的反应对感官体验至关重要。这项研究的重点是非疼痛性热刺激,即由温度变化引起的、不会造成不适的感觉。这些刺激通过特定的神经纤维传递到中枢神经系统,并在大脑的不同区域进行处理,包括岛叶皮层、前额叶皮层和前扣带回皮层。尽管对疼痛刺激的研究十分普遍,但对非疼痛热刺激的研究却较少。本研究旨在利用脑电图(EEG)和部分定向相干技术(PDC)研究大脑在感知非疼痛性冷热刺激时的功能连接,从而弥补这一空白。我们的研究结果表明,冷暖刺激之间的信息流方向形成了明显的对比,特别是在θ和α频段,主要集中在额叶和颞叶区域。PDC 的使用凸显了在这些刺激下大脑连接的复杂性,并强化了大脑中存在不同的路径来处理不同类型的非疼痛性冷暖刺激。
{"title":"Effective brain connectivity related to non-painful thermal stimuli using EEG.","authors":"Diana Carolina Santos Cuevas, Roberto Esteban Campos Ruiz, Denny Daniel Collina, Carlos Julio Tierra Criollo","doi":"10.1088/2057-1976/ad53ce","DOIUrl":"10.1088/2057-1976/ad53ce","url":null,"abstract":"<p><p>Understanding the brain response to thermal stimuli is crucial in the sensory experience. This study focuses on non-painful thermal stimuli, which are sensations induced by temperature changes without causing discomfort. These stimuli are transmitted to the central nervous system through specific nerve fibers and are processed in various regions of the brain, including the insular cortex, the prefrontal cortex, and anterior cingulate cortex. Despite the prevalence of studies on painful stimuli, non-painful thermal stimuli have been less explored. This research aims to bridge this gap by investigating brain functional connectivity during the perception of non-painful warm and cold stimuli using electroencephalography (EEG) and the partial directed coherence technique (PDC). Our results demonstrate a clear contrast in the direction of information flow between warm and cold stimuli, particularly in the theta and alpha frequency bands, mainly in frontal and temporal regions. The use of PDC highlights the complexity of brain connectivity during these stimuli and reinforces the existence of different pathways in the brain to process different types of non-painful warm and cold stimuli.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141247267","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multimodal 2D and 3D microscopic mapping of growth cartilage by computational imaging techniques - a short review including new research. 利用计算成像技术对生长软骨进行多模态二维和三维显微绘图--包括新研究在内的简短综述。
IF 1.4 Q2 Nursing Pub Date : 2024-06-10 DOI: 10.1088/2057-1976/ad4b1f
Fredrik K Mürer, Kim R Tekseth, Basab Chattopadhyay, Kristin Olstad, Muhammad Nadeem Akram, Dag W Breiby

Being able to image the microstructure of growth cartilage is important for understanding the onset and progression of diseases such as osteochondrosis and osteoarthritis, as well as for developing new treatments and implants. Studies of cartilage using conventional optical brightfield microscopy rely heavily on histological staining, where the added chemicals provide tissue-specific colours. Other microscopy contrast mechanisms include polarization, phase- and scattering contrast, enabling non-stained or 'label-free' imaging that significantly simplifies the sample preparation, thereby also reducing the risk of artefacts. Traditional high-performance microscopes tend to be both bulky and expensive.Computational imagingdenotes a range of techniques where computers with dedicated algorithms are used as an integral part of the image formation process. Computational imaging offers many advantages like 3D measurements, aberration correction and quantitative phase contrast, often combined with comparably cheap and compact hardware. X-ray microscopy is also progressing rapidly, in certain ways trailing the development of optical microscopy. In this study, we first briefly review the structures of growth cartilage and relevant microscopy characterization techniques, with an emphasis on Fourier ptychographic microscopy (FPM) and advanced x-ray microscopies. We next demonstrate with our own results computational imaging through FPM and compare the images with hematoxylin eosin and saffron (HES)-stained histology. Zernike phase contrast, and the nonlinear optical microscopy techniques of second harmonic generation (SHG) and two-photon excitation fluorescence (TPEF) are explored. Furthermore, X-ray attenuation-, phase- and diffraction-contrast computed tomography (CT) images of the very same sample are presented for comparisons. Future perspectives on the links to artificial intelligence, dynamic studies andin vivopossibilities conclude the article.

能够对生长软骨的微观结构进行成像,对于了解骨软化症和骨关节炎等疾病的发生和发展,以及开发新的治疗方法和植入物都非常重要。使用传统光学明视野显微镜对软骨进行的研究主要依赖于组织学染色,其中添加的化学物质可提供特定组织的颜色。其他显微镜对比机制包括偏振、相位和散射对比,实现了无染色或 "无标记 "成像,大大简化了样品制备过程,从而也降低了出现伪影的风险。传统的高性能显微镜往往既笨重又昂贵。计算成像是指在图像形成过程中使用计算机和专用算法的一系列技术。计算成像具有许多优势,如三维测量、像差校正和定量相位对比,通常与相当便宜和紧凑的硬件相结合。X 射线显微技术也在迅速发展,在某些方面已经落后于光学显微技术的发展。在本研究中,我们首先简要回顾了生长软骨的结构和相关的显微表征技术,重点介绍了 FPM 和先进的 X 射线显微镜。接下来,我们用自己的成果展示了傅立叶层析显微镜(FPM)的计算成像,并将图像与苏木精伊红和藏红花(HES)染色组织学进行了比较。报告还介绍了泽尔奈克相衬以及二次谐波发生(SHG)和双光子激发荧光(TPEF)等非线性光学显微技术。此外,还介绍了相同样本的 X 射线衰减、相位和衍射对比计算机断层扫描(CT)图像,以供比较。文章最后展望了与人工智能、动态研究和体内可能性的联系。
{"title":"Multimodal 2D and 3D microscopic mapping of growth cartilage by computational imaging techniques - a short review including new research.","authors":"Fredrik K Mürer, Kim R Tekseth, Basab Chattopadhyay, Kristin Olstad, Muhammad Nadeem Akram, Dag W Breiby","doi":"10.1088/2057-1976/ad4b1f","DOIUrl":"10.1088/2057-1976/ad4b1f","url":null,"abstract":"<p><p>Being able to image the microstructure of growth cartilage is important for understanding the onset and progression of diseases such as osteochondrosis and osteoarthritis, as well as for developing new treatments and implants. Studies of cartilage using conventional optical brightfield microscopy rely heavily on histological staining, where the added chemicals provide tissue-specific colours. Other microscopy contrast mechanisms include polarization, phase- and scattering contrast, enabling non-stained or 'label-free' imaging that significantly simplifies the sample preparation, thereby also reducing the risk of artefacts. Traditional high-performance microscopes tend to be both bulky and expensive.<i>Computational imaging</i>denotes a range of techniques where computers with dedicated algorithms are used as an integral part of the image formation process. Computational imaging offers many advantages like 3D measurements, aberration correction and quantitative phase contrast, often combined with comparably cheap and compact hardware. X-ray microscopy is also progressing rapidly, in certain ways trailing the development of optical microscopy. In this study, we first briefly review the structures of growth cartilage and relevant microscopy characterization techniques, with an emphasis on Fourier ptychographic microscopy (FPM) and advanced x-ray microscopies. We next demonstrate with our own results computational imaging through FPM and compare the images with hematoxylin eosin and saffron (HES)-stained histology. Zernike phase contrast, and the nonlinear optical microscopy techniques of second harmonic generation (SHG) and two-photon excitation fluorescence (TPEF) are explored. Furthermore, X-ray attenuation-, phase- and diffraction-contrast computed tomography (CT) images of the very same sample are presented for comparisons. Future perspectives on the links to artificial intelligence, dynamic studies and<i>in vivo</i>possibilities conclude the article.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140921096","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prediction of cervix cancer stage and grade from diffusion weighted imaging using EfficientNet. 利用 EfficientNet 从扩散加权成像预测宫颈癌的分期和分级。
IF 1.4 Q2 Nursing Pub Date : 2024-06-10 DOI: 10.1088/2057-1976/ad5207
Souha Aouadi, Tarraf Torfeh, Othmane Bouhali, S A Yoganathan, Satheesh Paloor, Suparna Chandramouli, Rabih Hammoud, Noora Al-Hammadi

Purpose. This study aims to introduce an innovative noninvasive method that leverages a single image for both grading and staging prediction. The grade and the stage of cervix cancer (CC) are determined from diffusion-weighted imaging (DWI) in particular apparent diffusion coefficient (ADC) maps using deep convolutional neural networks (DCNN).Methods. datasets composed of 85 patients having annotated tumor stage (I, II, III, and IV), out of this, 66 were with grade (II and III) and the remaining patients with no reported grade were retrospectively collected. The study was IRB approved. For each patient, sagittal and axial slices containing the gross tumor volume (GTV) were extracted from ADC maps. These were computed using the mono exponential model from diffusion weighted images (b-values = 0, 100, 1000) that were acquired prior to radiotherapy treatment. Balanced training sets were created using the Synthetic Minority Oversampling Technique (SMOTE) and fed to the DCNN. EfficientNetB0 and EfficientNetB3 were transferred from the ImageNet application to binary and four-class classification tasks. Five-fold stratified cross validation was performed for the assessment of the networks. Multiple evaluation metrics were computed including the area under the receiver operating characteristic curve (AUC). Comparisons with Resnet50, Xception, and radiomic analysis were performed.Results. for grade prediction, EfficientNetB3 gave the best performance with AUC = 0.924. For stage prediction, EfficientNetB0 was the best with AUC = 0.931. The difference between both models was, however, small and not statistically significant EfficientNetB0-B3 outperformed ResNet50 (AUC = 0.71) and Xception (AUC = 0.89) in stage prediction, and demonstrated comparable results in grade classification, where AUCs of 0.89 and 0.90 were achieved by ResNet50 and Xception, respectively. DCNN outperformed radiomic analysis that gave AUC = 0.67 (grade) and AUC = 0.66 (stage).Conclusion.the prediction of CC grade and stage from ADC maps is feasible by adapting EfficientNet approaches to the medical context.

目的:本研究旨在引入一种创新的无创方法,利用单一图像进行分级和分期预测。宫颈癌(CC)的分级和分期是利用深度卷积神经网络(DCNN)通过弥散加权成像(DWI),特别是表观弥散系数(ADC)映射确定的。该研究获得了美国国际研究局(IRB)的批准。每个患者的矢状切片和轴切片都包含从 ADC 图中提取的肿瘤总体积(GTV)。这些数据是使用单指数模型从放疗前获得的扩散加权图像(b 值=0、100、1000)中计算得出的。使用合成少数群体过采样技术(SMOTE)创建了平衡训练集,并将其输入 DCNN。EfficientNetB0 和 EfficientNetB3 从 ImageNet 应用程序转移到二元和四元分类任务中。对网络的评估采用了五倍分层交叉验证。计算了多个评价指标,包括接收者工作特征曲线下面积(AUC)。结果显示:在等级预测方面,EfficientNetB3 的 AUC=0.924 表现最佳。在分期预测方面,EfficientNetB0 的 AUC=0.931 是最好的。在分期预测方面,EfficientNetB0-B3 的表现优于 ResNet50(AUC=0.71)和 Xception(AUC=0.89);在等级分类方面,ResNet50 和 Xception 的 AUC 分别为 0.89 和 0.90,表现相当。DCNN的表现优于放射学分析,后者的AUC=0.67(等级)和AUC=0.66(分期)。
{"title":"Prediction of cervix cancer stage and grade from diffusion weighted imaging using EfficientNet.","authors":"Souha Aouadi, Tarraf Torfeh, Othmane Bouhali, S A Yoganathan, Satheesh Paloor, Suparna Chandramouli, Rabih Hammoud, Noora Al-Hammadi","doi":"10.1088/2057-1976/ad5207","DOIUrl":"10.1088/2057-1976/ad5207","url":null,"abstract":"<p><p><i>Purpose</i>. This study aims to introduce an innovative noninvasive method that leverages a single image for both grading and staging prediction. The grade and the stage of cervix cancer (CC) are determined from diffusion-weighted imaging (DWI) in particular apparent diffusion coefficient (ADC) maps using deep convolutional neural networks (DCNN).<i>Methods</i>. datasets composed of 85 patients having annotated tumor stage (I, II, III, and IV), out of this, 66 were with grade (II and III) and the remaining patients with no reported grade were retrospectively collected. The study was IRB approved. For each patient, sagittal and axial slices containing the gross tumor volume (GTV) were extracted from ADC maps. These were computed using the mono exponential model from diffusion weighted images (b-values = 0, 100, 1000) that were acquired prior to radiotherapy treatment. Balanced training sets were created using the Synthetic Minority Oversampling Technique (SMOTE) and fed to the DCNN. EfficientNetB0 and EfficientNetB3 were transferred from the ImageNet application to binary and four-class classification tasks. Five-fold stratified cross validation was performed for the assessment of the networks. Multiple evaluation metrics were computed including the area under the receiver operating characteristic curve (AUC). Comparisons with Resnet50, Xception, and radiomic analysis were performed.<i>Results</i>. for grade prediction, EfficientNetB3 gave the best performance with AUC = 0.924. For stage prediction, EfficientNetB0 was the best with AUC = 0.931. The difference between both models was, however, small and not statistically significant EfficientNetB0-B3 outperformed ResNet50 (AUC = 0.71) and Xception (AUC = 0.89) in stage prediction, and demonstrated comparable results in grade classification, where AUCs of 0.89 and 0.90 were achieved by ResNet50 and Xception, respectively. DCNN outperformed radiomic analysis that gave AUC = 0.67 (grade) and AUC = 0.66 (stage).<i>Conclusion.</i>the prediction of CC grade and stage from ADC maps is feasible by adapting EfficientNet approaches to the medical context.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141178590","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Precise positioning of gamma ray interactions in multiplexed pixelated scintillators using artificial neural networks. 利用人工神经网络精确定位多路像素闪烁体中的伽马射线相互作用。
IF 1.4 Q2 Nursing Pub Date : 2024-06-05 DOI: 10.1088/2057-1976/ad4f73
P M M Correia, B Cruzeiro, J Dias, P M C C Encarnação, F M Ribeiro, C A Rodrigues, A L M Silva

Introduction. The positioning ofγray interactions in positron emission tomography (PET) detectors is commonly made through the evaluation of the Anger logic flood histograms. machine learning techniques, leveraging features extracted from signal waveform, have demonstrated successful applications in addressing various challenges in PET instrumentation.Aim. This paper evaluates the use of artificial neural networks (NN) forγray interaction positioning in pixelated scintillators coupled to a multiplexed array of silicon photomultipliers (SiPM).Methods. An array of 16 Cerium doped Lutetium-based (LYSO) crystal pixels (cross-section 2 × 2 mm2) coupled to 16 SiPM (S13360-1350) were used for the experimental setup. Data from each of the 16 LYSO pixels was recorded, a total of 160000 events. The detectors were irradiated by 511 keV annihilationγrays from a Sodium-22 (22Na) source. Another LYSO crystal was used for electronic collimation. Features extracted from the signal waveform were used to train the model. Two models were tested: i) single multiple-class neural network (mcNN), with 16 possible outputs followed by a softmax and ii) 16 binary classification neural networks (bNN), each one specialized in identifying events occurred in each position.Results. Both NN models showed a mean positioning accuracy above 85% on the evaluation dataset, although the mcNN is faster to train.DiscussionThe method's accuracy is affected by the introduction of misclassified events that interacted in the neighbour's crystals and were misclassified during the dataset acquisition. Electronic collimation reduces this effect, however results could be improved using a more complex acquisition setup, such as a light-sharing configuration.ConclusionsThe methods comparison showed that mcNN and bNN can surpass the Anger logic, showing the feasibility of using these models in positioning procedures of future multiplexed detector systems in a linear configuration.

介绍:正电子发射断层扫描(PET)探测器中伽马射线相互作用的定位通常是通过评估安格逻辑洪峰直方图来实现的。利用从信号波形中提取的特征的机器学习技术已成功应用于解决正电子发射断层扫描仪器中的各种难题。目的:本文评估了人工神经网络(NN)在与硅光电倍增管(SiPM)多路复用阵列耦合的像素化闪烁体中用于伽马射线相互作用定位的应用:实验装置由 16 个掺铈镥基(LYSO)晶体像素(横截面为 2x2 mm2)阵列和 16 个硅光电倍增管(SiPM,S13360-1350)组成。16 个 LYSO 像素中的每个像素都记录了数据,共计 160 000 个事件。探测器受到来自钠-22 (22Na) 源的 511 keV 湮灭伽马射线的照射。另一个 LYSO 晶体用于电子准直。从信号波形中提取的特征用于训练模型。测试了两个模型:i) 单个多类神经网络(mcNN),有 16 个可能的输出,然后是软最大值;ii) 16 个二元分类神经网络(bNN),每个网络专门识别每个位置上发生的事件:结果:两种神经网络模型在评估数据集上的平均定位精度都超过了 85%,尽管 mcNN 的训练速度更快:讨论:该方法的准确性会受到误分类事件的影响,这些事件在数据集获取过程中与邻近晶体发生相互作用并被误分类。电子准直减少了这种影响,但如果采用更复杂的采集设置,如光共享配置,结果可能会更好:方法比较显示,mcNN 和 bNN 可以超越安格逻辑,这表明在未来线性配置的多路复用探测器系统的定位程序中使用这些模型是可行的。
{"title":"Precise positioning of gamma ray interactions in multiplexed pixelated scintillators using artificial neural networks.","authors":"P M M Correia, B Cruzeiro, J Dias, P M C C Encarnação, F M Ribeiro, C A Rodrigues, A L M Silva","doi":"10.1088/2057-1976/ad4f73","DOIUrl":"10.1088/2057-1976/ad4f73","url":null,"abstract":"<p><p><i>Introduction</i>. The positioning of<i>γ</i>ray interactions in positron emission tomography (PET) detectors is commonly made through the evaluation of the Anger logic flood histograms. machine learning techniques, leveraging features extracted from signal waveform, have demonstrated successful applications in addressing various challenges in PET instrumentation.<i>Aim</i>. This paper evaluates the use of artificial neural networks (NN) for<i>γ</i>ray interaction positioning in pixelated scintillators coupled to a multiplexed array of silicon photomultipliers (SiPM).<i>Methods</i>. An array of 16 Cerium doped Lutetium-based (LYSO) crystal pixels (cross-section 2 × 2 mm<sup>2</sup>) coupled to 16 SiPM (S13360-1350) were used for the experimental setup. Data from each of the 16 LYSO pixels was recorded, a total of 160000 events. The detectors were irradiated by 511 keV annihilation<i>γ</i>rays from a Sodium-22 (<sup>22</sup>Na) source. Another LYSO crystal was used for electronic collimation. Features extracted from the signal waveform were used to train the model. Two models were tested: i) single multiple-class neural network (mcNN), with 16 possible outputs followed by a softmax and ii) 16 binary classification neural networks (bNN), each one specialized in identifying events occurred in each position.<i>Results</i>. Both NN models showed a mean positioning accuracy above 85% on the evaluation dataset, although the mcNN is faster to train.<i>Discussion</i>The method's accuracy is affected by the introduction of misclassified events that interacted in the neighbour's crystals and were misclassified during the dataset acquisition. Electronic collimation reduces this effect, however results could be improved using a more complex acquisition setup, such as a light-sharing configuration.<i>Conclusions</i>The methods comparison showed that mcNN and bNN can surpass the Anger logic, showing the feasibility of using these models in positioning procedures of future multiplexed detector systems in a linear configuration.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141080453","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Surface-modified injectable poly(ethylene-glycol) diacrylate-based cryogels for localized gene delivery. 用于局部基因递送的表面改性可注射聚(乙二醇)二丙烯酸酯基冷凝胶。
IF 1.4 Q2 Nursing Pub Date : 2024-06-05 DOI: 10.1088/2057-1976/ad4e3a
Neha Dalal, Hiren Dandia, Arvind Ingle, Prakriti Tayalia

Lentiviral transduction is widely used in research, has shown promise in clinical trials involving gene therapy and has been approved for CAR-T cell immunotherapy. However, most modifications are doneex vivoand rely on systemic administration of large numbers of transduced cells for clinical applications. A novel approach utilizingin situbiomaterial-based gene delivery can reduce off-target side effects while enhancing effectiveness of the manipulation process. In this study, poly(ethylene glycol) diacrylate (PEGDA)-based scaffolds were developed to enablein situlentivirus-mediated transduction. Compared to other widely popular biomaterials, PEGDA stands out due to its robustness and cost-effectiveness. These scaffolds, prepared via cryogelation, are capable of flowing through surgical needles in bothin vitroandin vivoconditions, and promptly regain their original shape. Modification with poly(L-lysine) (PLL) enables lentivirus immobilization while interconnected macroporous structure allows cell infiltration into these matrices, thereby facilitating cell-virus interaction over a large surface area for efficient transduction. Notably, these preformed injectable scaffolds demonstrate hemocompatibility, cell viability and minimally inflammatory response as shown by ourin vitroandin vivostudies involving histology and immunophenotyping of infiltrating cells. This study marks the first instance of using preformed injectable scaffolds for delivery of lentivectors, which offers a non-invasive and localized approach for delivery of factors enablingin situlentiviral transduction suitable for both tissue engineering and immunotherapeutic applications.

慢病毒转导被广泛应用于研究领域,在涉及基因治疗的临床试验中显示出良好前景,并已获准用于 CAR-T 细胞免疫疗法。然而,大多数改造都是在体外进行的,临床应用时需要依赖全身给药大量转导细胞。利用基于生物材料的原位基因递送新方法可以减少脱靶副作用,同时提高操作过程的有效性。本研究开发了基于聚乙二醇二丙烯酸酯(PEGDA)的支架,以实现慢病毒介导的原位转导。与其他广泛流行的生物材料相比,聚乙二醇二丙烯酸酯因其坚固性和成本效益而脱颖而出。这些通过低温凝胶法制备的支架能够在体外和体内条件下流经手术针头,并能迅速恢复原状。用聚(L-赖氨酸)(PLL)改性可固定慢病毒,而相互连接的大孔结构可使细胞渗入这些基质,从而促进细胞与病毒在大表面积上的相互作用,实现高效转导。值得注意的是,体外和体内研究(包括组织学和浸润细胞的免疫分型)表明,这些预成型可注射支架具有血液相容性、细胞存活率和最小炎症反应。这项研究标志着首次使用预成型可注射支架来递送慢病毒载体,它提供了一种非侵入性的局部递送方法,使慢病毒原位转导适用于组织工程和免疫治疗应用。
{"title":"Surface-modified injectable poly(ethylene-glycol) diacrylate-based cryogels for localized gene delivery.","authors":"Neha Dalal, Hiren Dandia, Arvind Ingle, Prakriti Tayalia","doi":"10.1088/2057-1976/ad4e3a","DOIUrl":"10.1088/2057-1976/ad4e3a","url":null,"abstract":"<p><p>Lentiviral transduction is widely used in research, has shown promise in clinical trials involving gene therapy and has been approved for CAR-T cell immunotherapy. However, most modifications are done<i>ex vivo</i>and rely on systemic administration of large numbers of transduced cells for clinical applications. A novel approach utilizing<i>in situ</i>biomaterial-based gene delivery can reduce off-target side effects while enhancing effectiveness of the manipulation process. In this study, poly(ethylene glycol) diacrylate (PEGDA)-based scaffolds were developed to enable<i>in situ</i>lentivirus-mediated transduction. Compared to other widely popular biomaterials, PEGDA stands out due to its robustness and cost-effectiveness. These scaffolds, prepared via cryogelation, are capable of flowing through surgical needles in both<i>in vitro</i>and<i>in vivo</i>conditions, and promptly regain their original shape. Modification with poly(L-lysine) (PLL) enables lentivirus immobilization while interconnected macroporous structure allows cell infiltration into these matrices, thereby facilitating cell-virus interaction over a large surface area for efficient transduction. Notably, these preformed injectable scaffolds demonstrate hemocompatibility, cell viability and minimally inflammatory response as shown by our<i>in vitro</i>and<i>in vivo</i>studies involving histology and immunophenotyping of infiltrating cells. This study marks the first instance of using preformed injectable scaffolds for delivery of lentivectors, which offers a non-invasive and localized approach for delivery of factors enabling<i>in situ</i>lentiviral transduction suitable for both tissue engineering and immunotherapeutic applications.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":null,"pages":null},"PeriodicalIF":1.4,"publicationDate":"2024-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141074572","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Biomedical Physics & Engineering Express
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1