Pub Date : 2024-09-13DOI: 10.1088/2057-1976/ad72f9
Daniel Gourdeau, Simon Duchesne, Louis Archambault
Some pathologies such as cancer and dementia require multiple imaging modalities to fully diagnose and assess the extent of the disease. Magnetic resonance imaging offers this kind of polyvalence, but examinations take time and can require contrast agent injection. The flexible synthesis of these imaging sequences based on the available ones for a given patient could help reduce scan times or circumvent the need for contrast agent injection. In this work, we propose a deep learning architecture that can perform the synthesis of all missing imaging sequences from any subset of available images. The network is trained adversarially, with the generator consisting of parallel 3D U-Net encoders and decoders that optimally combines their multi-resolution representations with a fusion operation learned by an attention network trained conjointly with the generator network. We compare our synthesis performance with 3D networks using other types of fusion and a comparable number of trainable parameters, such as the mean/variance fusion. In all synthesis scenarios except one, the synthesis performance of the network using attention-guided fusion was better than the other fusion schemes. We also inspect the encoded representations and the attention network outputs to gain insights into the synthesis process, and uncover desirable behaviors such as prioritization of specific modalities, flexible construction of the representation when important modalities are missing, and modalities being selected in regions where they carry sequence-specific information. This work suggests that a better construction of the latent representation space in hetero-modal networks can be achieved by using an attention network.
{"title":"An hetero-modal deep learning framework for medical image synthesis applied to contrast and non-contrast MRI.","authors":"Daniel Gourdeau, Simon Duchesne, Louis Archambault","doi":"10.1088/2057-1976/ad72f9","DOIUrl":"10.1088/2057-1976/ad72f9","url":null,"abstract":"<p><p>Some pathologies such as cancer and dementia require multiple imaging modalities to fully diagnose and assess the extent of the disease. Magnetic resonance imaging offers this kind of polyvalence, but examinations take time and can require contrast agent injection. The flexible synthesis of these imaging sequences based on the available ones for a given patient could help reduce scan times or circumvent the need for contrast agent injection. In this work, we propose a deep learning architecture that can perform the synthesis of all missing imaging sequences from any subset of available images. The network is trained adversarially, with the generator consisting of parallel 3D U-Net encoders and decoders that optimally combines their multi-resolution representations with a fusion operation learned by an attention network trained conjointly with the generator network. We compare our synthesis performance with 3D networks using other types of fusion and a comparable number of trainable parameters, such as the mean/variance fusion. In all synthesis scenarios except one, the synthesis performance of the network using attention-guided fusion was better than the other fusion schemes. We also inspect the encoded representations and the attention network outputs to gain insights into the synthesis process, and uncover desirable behaviors such as prioritization of specific modalities, flexible construction of the representation when important modalities are missing, and modalities being selected in regions where they carry sequence-specific information. This work suggests that a better construction of the latent representation space in hetero-modal networks can be achieved by using an attention network.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142046227","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-12DOI: 10.1088/2057-1976/ad773a
Pratap Kumar Koppolu, Krishnan Chemmangat
Hand Movement Recognition (HMR) with sEMG is crucial for artificial hand prostheses. HMR performance mostly depends on the feature information that is fed to the classifiers. However, sEMG often captures noise like power line interference (PLI) and motion artifacts. This may extract redundant and insignificant feature information, which can degrade HMR performance and increase computational complexity. This study aims to address these issues by proposing a novel procedure for automatically removing PLI and motion artifacts from experimental sEMG signals. This will make it possible to extract better features from the signal and improve the categorization of various hand movements. Empirical mode decomposition and energy entropy thresholding are utilized to select relevant mode components for artifact removal. Time domain features are then used to train classifiers (kNN, LDA, SVM) for hand movement categorization, achieving average accuracies of 92.36%, 93.63%, and 98.12%, respectively, across subjects. Additionally, muscle contraction efforts are classified into low, medium, and high categories using this technique. Validation is performed on data from ten subjects performing eight hand movement classes and three muscle contraction efforts with three surface electrode channels. Results indicate that the proposed preprocessing improves average accuracy by 9.55% with the SVM classifier, significantly reducing computational time.
{"title":"A novel procedure to automate the removal of PLI and motion artifacts using mode decomposition to enhance pattern recognition of sEMG signals for myoelectric control of prosthesis.","authors":"Pratap Kumar Koppolu, Krishnan Chemmangat","doi":"10.1088/2057-1976/ad773a","DOIUrl":"10.1088/2057-1976/ad773a","url":null,"abstract":"<p><p>Hand Movement Recognition (HMR) with sEMG is crucial for artificial hand prostheses. HMR performance mostly depends on the feature information that is fed to the classifiers. However, sEMG often captures noise like power line interference (PLI) and motion artifacts. This may extract redundant and insignificant feature information, which can degrade HMR performance and increase computational complexity. This study aims to address these issues by proposing a novel procedure for automatically removing PLI and motion artifacts from experimental sEMG signals. This will make it possible to extract better features from the signal and improve the categorization of various hand movements. Empirical mode decomposition and energy entropy thresholding are utilized to select relevant mode components for artifact removal. Time domain features are then used to train classifiers (kNN, LDA, SVM) for hand movement categorization, achieving average accuracies of 92.36%, 93.63%, and 98.12%, respectively, across subjects. Additionally, muscle contraction efforts are classified into low, medium, and high categories using this technique. Validation is performed on data from ten subjects performing eight hand movement classes and three muscle contraction efforts with three surface electrode channels. Results indicate that the proposed preprocessing improves average accuracy by 9.55% with the SVM classifier, significantly reducing computational time.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142131729","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Stochastic optical reconstruction microscopy (STORM) is extensively utilized in the fields of cell and molecular biology as a super-resolution imaging technique for visualizing cells and molecules. Nonetheless, the imaging process of STORM is frequently susceptible to noise, which can significantly impact the subsequent image analysis. Moreover, there is currently a lack of a comprehensive automated processing approach for analyzing protein aggregation states from a large number of STORM images. This paper initially applies our previously proposed denoising algorithm, UNet-Att, in STORM image denoising. This algorithm was constructed based on attention mechanism and multi-scale features, showcasing a remarkably efficient performance in denoising. Subsequently, we propose a collection of automated image processing algorithms for the ultimate feature extractions and data analyses of the STORM images. The information extraction workflow effectively integrates automated methods of image denoising, objective image segmentation and binarization, and object information extraction, and a novel image information clustering algorithm specifically developed for the morphological analysis of the objects in the STORM images. This automated workflow significantly improves the efficiency of the effective data analysis for large-scale original STORM images.
{"title":"STORM Image Denoising and Information Extraction.","authors":"Yuer Lu,Yongfa Ying,Chengliang Huang,Xiang Li,Jinyan Cheng,Rongwen Yu,Lixiang Ma,Jianwei Shuai,Xuejin Zhou,Jinjin Zhong","doi":"10.1088/2057-1976/ad7a02","DOIUrl":"https://doi.org/10.1088/2057-1976/ad7a02","url":null,"abstract":"Stochastic optical reconstruction microscopy (STORM) is extensively utilized in the fields of cell and molecular biology as a super-resolution imaging technique for visualizing cells and molecules. Nonetheless, the imaging process of STORM is frequently susceptible to noise, which can significantly impact the subsequent image analysis. Moreover, there is currently a lack of a comprehensive automated processing approach for analyzing protein aggregation states from a large number of STORM images. This paper initially applies our previously proposed denoising algorithm, UNet-Att, in STORM image denoising. This algorithm was constructed based on attention mechanism and multi-scale features, showcasing a remarkably efficient performance in denoising. Subsequently, we propose a collection of automated image processing algorithms for the ultimate feature extractions and data analyses of the STORM images. The information extraction workflow effectively integrates automated methods of image denoising, objective image segmentation and binarization, and object information extraction, and a novel image information clustering algorithm specifically developed for the morphological analysis of the objects in the STORM images. This automated workflow significantly improves the efficiency of the effective data analysis for large-scale original STORM images.","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":"8 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142253035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-12DOI: 10.1088/2057-1976/ad7592
Mohammad Amin Abazari, M Soltani, Faezeh Eydi, Arman Rahmim, Farshad Moradi Kashkooli
18F-Fluoromisonidazole (18F-FMISO) is a highly promising positron emission tomography radiopharmaceutical for identifying hypoxic regions in solid tumors. This research employs spatiotemporal multi-scale mathematical modeling to explore how different levels of angiogenesis influence the transport of radiopharmaceuticals within tumors. In this study, two tumor geometries with heterogeneous and uniform distributions of capillary networks were employed to incorporate varying degrees of microvascular density. The synthetic image of the heterogeneous and vascularized tumor was generated by simulating the angiogenesis process. The proposed multi-scale spatiotemporal model accounts for intricate physiological and biochemical factors within the tumor microenvironment, such as the transvascular transport of the radiopharmaceutical agent, its movement into the interstitial space by diffusion and convection mechanisms, and ultimately its uptake by tumor cells. Results showed that both quantitative and semi-quantitative metrics of18F-FMISO uptake differ spatially and temporally at different stages during tumor growth. The presence of a high microvascular density in uniformly vascularized tumor increases cellular uptake, as it allows for more efficient release and rapid distribution of radiopharmaceutical molecules. This results in enhanced uptake compared to the heterogeneous vascularized tumor. In both heterogeneous and uniform distribution of microvessels in tumors, the diffusion transport mechanism has a more pronounced than convection. The findings of this study shed light on the transport phenomena behind18F-FMISO radiopharmaceutical distribution and its delivery in the tumor microenvironment, aiding oncologists in their routine decision-making processes.
{"title":"Mathematical modeling of<sup>18</sup>F-Fluoromisonidazole (<sup>18</sup>F-FMISO) radiopharmaceutical transport in vascularized solid tumors.","authors":"Mohammad Amin Abazari, M Soltani, Faezeh Eydi, Arman Rahmim, Farshad Moradi Kashkooli","doi":"10.1088/2057-1976/ad7592","DOIUrl":"10.1088/2057-1976/ad7592","url":null,"abstract":"<p><p><sup>18</sup>F-Fluoromisonidazole (<sup>18</sup>F-FMISO) is a highly promising positron emission tomography radiopharmaceutical for identifying hypoxic regions in solid tumors. This research employs spatiotemporal multi-scale mathematical modeling to explore how different levels of angiogenesis influence the transport of radiopharmaceuticals within tumors. In this study, two tumor geometries with heterogeneous and uniform distributions of capillary networks were employed to incorporate varying degrees of microvascular density. The synthetic image of the heterogeneous and vascularized tumor was generated by simulating the angiogenesis process. The proposed multi-scale spatiotemporal model accounts for intricate physiological and biochemical factors within the tumor microenvironment, such as the transvascular transport of the radiopharmaceutical agent, its movement into the interstitial space by diffusion and convection mechanisms, and ultimately its uptake by tumor cells. Results showed that both quantitative and semi-quantitative metrics of<sup>18</sup>F-FMISO uptake differ spatially and temporally at different stages during tumor growth. The presence of a high microvascular density in uniformly vascularized tumor increases cellular uptake, as it allows for more efficient release and rapid distribution of radiopharmaceutical molecules. This results in enhanced uptake compared to the heterogeneous vascularized tumor. In both heterogeneous and uniform distribution of microvessels in tumors, the diffusion transport mechanism has a more pronounced than convection. The findings of this study shed light on the transport phenomena behind<sup>18</sup>F-FMISO radiopharmaceutical distribution and its delivery in the tumor microenvironment, aiding oncologists in their routine decision-making processes.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142103981","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Breast cancer detection and differentiation of breast tissues are critical for accurate diagnosis and treatment planning. This study addresses the challenge of distinguishing between invasive ductal carcinoma (IDC), normal glandular breast tissues (nGBT), and adipose tissue using electrical impedance spectroscopy combined with Gaussian relaxation-time distribution (EIS-GRTD). The primary objective is to investigate the relaxation-time characteristics of these tissues and their potential to differentiate between normal and abnormal breast tissues. We applied a single-point EIS-GRTD measurement to ten mastectomy specimens across a frequency range f = 4 Hz to 5 MHz. The method calculates the differential ratio of the relaxation-time distribution function ∆γ between IDC and nGBT, which is denoted by 〖∆γ〗^(IDC-nGBT), and ∆γ between IDC and adipose tissues, which is denoted by 〖∆γ〗^(IDC-adipose). As a result, the differential ratio of ∆γ between IDC and nGBT 〖∆γ〗^(IDC-nGBT) is 0.36, and between IDC and adipose 〖∆γ〗^(IDC-adipose) is 0.27, which included in the α-dispersion at τ^peak1= 0.033 ± 0.001 s. In all specimens, the relaxation-time distribution function γ of IDC γ^IDC is higher, and there is no intersection with γ of nGBT γ^nGBT and adipose γ^adipose. The difference in γ suggests potential variations in relaxation properties at the molecular or structural level within each breast tissue that contribute to the overall relaxation response. The average mean percentage error δ for IDC, nGBT, and adipose tissues are 5.90%, 6.33%, and 8.07%, respectively, demonstrating the model's accuracy and reliability. This study provides novel insights into the use of relaxation-time characteristic for differentiating breast tissue types, offering potential advancements in diagnosis methods. Future research will focus on correlating EIS-GRTD finding with pathological results from the same test sites to further validate the method's efficacy.
{"title":"Detection of Invasive Ductal Carcinoma by Electrical Impedance Spectroscopy Implementing Gaussian Relaxation-Time Distribution (EIS-GRTD).","authors":"Galih Setyawan,Kiagus Aufa Ibrahim,Ryoma Ogawa,Prima Asmara Sejati,Hiroshi Fujimoto,Hiroto Yamamoto,Masahiro Takei","doi":"10.1088/2057-1976/ad795f","DOIUrl":"https://doi.org/10.1088/2057-1976/ad795f","url":null,"abstract":"Breast cancer detection and differentiation of breast tissues are critical for accurate diagnosis and treatment planning. This study addresses the challenge of distinguishing between invasive ductal carcinoma (IDC), normal glandular breast tissues (nGBT), and adipose tissue using electrical impedance spectroscopy combined with Gaussian relaxation-time distribution (EIS-GRTD). The primary objective is to investigate the relaxation-time characteristics of these tissues and their potential to differentiate between normal and abnormal breast tissues. We applied a single-point EIS-GRTD measurement to ten mastectomy specimens across a frequency range f = 4 Hz to 5 MHz. The method calculates the differential ratio of the relaxation-time distribution function ∆γ between IDC and nGBT, which is denoted by 〖∆γ〗^(IDC-nGBT), and ∆γ between IDC and adipose tissues, which is denoted by 〖∆γ〗^(IDC-adipose). As a result, the differential ratio of ∆γ between IDC and nGBT 〖∆γ〗^(IDC-nGBT) is 0.36, and between IDC and adipose 〖∆γ〗^(IDC-adipose) is 0.27, which included in the α-dispersion at τ^peak1= 0.033 ± 0.001 s. In all specimens, the relaxation-time distribution function γ of IDC γ^IDC is higher, and there is no intersection with γ of nGBT γ^nGBT and adipose γ^adipose. The difference in γ suggests potential variations in relaxation properties at the molecular or structural level within each breast tissue that contribute to the overall relaxation response. The average mean percentage error δ for IDC, nGBT, and adipose tissues are 5.90%, 6.33%, and 8.07%, respectively, demonstrating the model's accuracy and reliability. This study provides novel insights into the use of relaxation-time characteristic for differentiating breast tissue types, offering potential advancements in diagnosis methods. Future research will focus on correlating EIS-GRTD finding with pathological results from the same test sites to further validate the method's efficacy.","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":"397 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142194414","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-11DOI: 10.1088/2057-1976/ad795c
Xu Bocheng,Rodrigo França
This paper reviews 3D bioprinting technologies and Bio-inks materials in brain neuroscience applications. The integration of 3D bioprinting technology in neuroscience research offers a unique platform to create complex brain and tissue architectures that mimic the mechanical, architectural, and biochemical properties of native tissues, providing a robust tool for modeling, repair, and drug screening applications. The review provides discussions and conclusions to highlight the current research, research gaps and recommendations for the future research on 3D bioprinting in neuroscience. The investigation shows that 3D bioprinting has a great potential to fabricate brain-like tissue constructs, holds great promise for regenerative medicine and drug testing models, offering new avenues for studying brain diseases and potential treatments. It is also found that the future of bioinks requires continuous improvement and innovation to meet the needs of applications in the field of neuroscience, aiming to improve the functionality and performance of bioink materials for neural tissue engineering.
.
{"title":"Innovative 3D bioprinting approaches for advancing brain science and medicine: a literature review.","authors":"Xu Bocheng,Rodrigo França","doi":"10.1088/2057-1976/ad795c","DOIUrl":"https://doi.org/10.1088/2057-1976/ad795c","url":null,"abstract":"This paper reviews 3D bioprinting technologies and Bio-inks materials in brain neuroscience applications. The integration of 3D bioprinting technology in neuroscience research offers a unique platform to create complex brain and tissue architectures that mimic the mechanical, architectural, and biochemical properties of native tissues, providing a robust tool for modeling, repair, and drug screening applications. The review provides discussions and conclusions to highlight the current research, research gaps and recommendations for the future research on 3D bioprinting in neuroscience. The investigation shows that 3D bioprinting has a great potential to fabricate brain-like tissue constructs, holds great promise for regenerative medicine and drug testing models, offering new avenues for studying brain diseases and potential treatments. It is also found that the future of bioinks requires continuous improvement and innovation to meet the needs of applications in the field of neuroscience, aiming to improve the functionality and performance of bioink materials for neural tissue engineering.
.","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":"63 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142194242","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
OBJECTIVEAdvancements in data science and assistive technologies have made invasive brain-computer interfaces (iBCIs) increasingly viable for enhancing the quality of life in physically disabled individuals. Intracortical micro-electrode implants are a common choice for such a communication system due to their fine temporal and spatial resolution. The small size of these implants makes the implantation plan critical for the successful exfiltration of information, particularly when targeting representations of task goals that lack robust anatomical correlates.APPROACHWorking memory processes including encoding, retrieval, and maintenance are observed in many areas of the brain. Using human electrocorticography recordings during a working memory experiment, we provide proof that it is possible to localize cognitive activity associated with the task and to identify key locations involved with executive memory functions.
Results. From the analysis, we could propose an optimal iBCI implant location with the desired features. The general approach is not limited to working memory but could also be used to map other goal-encoding factors such as movement intentions, decision-making, and visual-spatial attention.SIGNIFICANCEDeciphering the intended action of a BCI user is a complex challenge that involves the extraction and integration of cognitive factors such as movement planning, working memory, visual spatial attention, and the decision state. Examining local field potentials from ECoG electrodes while participants engaged in tailored cognitive tasks can pinpoint location with valuable information related to anticipated actions. This manuscript demonstrates the feasibility of identifying electrodes involved in cognitive activity related to working memory during user engagement in the NBack task. Devoting time in meticulous preparation to identify the optimal brain regions for BCI implant locations will increase the likelihood of rich signal outcomes, thereby improving the overall BCI user experience.
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{"title":"Mapping cognitive activity from electrocorticography field potentials in humans performing NBack task.","authors":"Renee Johnston,Chadwick Boulay,Kai Miller,Adam Sachs","doi":"10.1088/2057-1976/ad795e","DOIUrl":"https://doi.org/10.1088/2057-1976/ad795e","url":null,"abstract":"OBJECTIVEAdvancements in data science and assistive technologies have made invasive brain-computer interfaces (iBCIs) increasingly viable for enhancing the quality of life in physically disabled individuals. Intracortical micro-electrode implants are a common choice for such a communication system due to their fine temporal and spatial resolution. The small size of these implants makes the implantation plan critical for the successful exfiltration of information, particularly when targeting representations of task goals that lack robust anatomical correlates.APPROACHWorking memory processes including encoding, retrieval, and maintenance are observed in many areas of the brain. Using human electrocorticography recordings during a working memory experiment, we provide proof that it is possible to localize cognitive activity associated with the task and to identify key locations involved with executive memory functions.
Results. From the analysis, we could propose an optimal iBCI implant location with the desired features. The general approach is not limited to working memory but could also be used to map other goal-encoding factors such as movement intentions, decision-making, and visual-spatial attention.SIGNIFICANCEDeciphering the intended action of a BCI user is a complex challenge that involves the extraction and integration of cognitive factors such as movement planning, working memory, visual spatial attention, and the decision state. Examining local field potentials from ECoG electrodes while participants engaged in tailored cognitive tasks can pinpoint location with valuable information related to anticipated actions. This manuscript demonstrates the feasibility of identifying electrodes involved in cognitive activity related to working memory during user engagement in the NBack task. Devoting time in meticulous preparation to identify the optimal brain regions for BCI implant locations will increase the likelihood of rich signal outcomes, thereby improving the overall BCI user experience.
.","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":"54 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142194415","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-11DOI: 10.1088/2057-1976/ad795b
Raffael Willmann,Michael Almeida,Erick Stoppa,Luís Barbisan,Jose R A Miranda,Guilherme Soares
In recent years, magnetic nanoparticles (MNPs) have exhibited theranostic characteristics which confer a wide range of applications in the biomedical field. Consequently, through Alternating Current Biosusceptometry (ACB), magnetic nanoparticles can be used as tracers, allowing the study of healthy and cirrhotic livers and providing the ability to differentiate them through the reconstruction of quantitative images. The ACB system consists of a developing biomagnetic technique that has the ability to magnetize and measure the magnetic susceptibility of a material such as MNPs, thereby offering quantitative information about biological systems with magnetic tracers.
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{"title":"Evaluation and imaging of biodistribution of magnetic nanoparticles in a model of hepatic cirrhosis via Alternating Current Biosusceptometry.","authors":"Raffael Willmann,Michael Almeida,Erick Stoppa,Luís Barbisan,Jose R A Miranda,Guilherme Soares","doi":"10.1088/2057-1976/ad795b","DOIUrl":"https://doi.org/10.1088/2057-1976/ad795b","url":null,"abstract":"In recent years, magnetic nanoparticles (MNPs) have exhibited theranostic characteristics which confer a wide range of applications in the biomedical field. Consequently, through Alternating Current Biosusceptometry (ACB), magnetic nanoparticles can be used as tracers, allowing the study of healthy and cirrhotic livers and providing the ability to differentiate them through the reconstruction of quantitative images. The ACB system consists of a developing biomagnetic technique that has the ability to magnetize and measure the magnetic susceptibility of a material such as MNPs, thereby offering quantitative information about biological systems with magnetic tracers.
.","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":"19 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142224932","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-11DOI: 10.1088/2057-1976/ad795d
Felicia Aswathy W,Jiya Jose,E I Anila
This study describes the in-vitro cytotoxic effects of PEG-400 (Polyethylene glycol-400)-capped platinum nanoparticles (PEGylated Pt NPs) on both normal and cancer cell lines. Structural characterization was carried out using X-ray diffraction and Raman spectroscopy with an average crystallite size 5.7 nm, and morphological assessment using Scanning electron microscopy (SEM) revealed the presence of spherical platinum nanoparticles. The results of energy-dispersive X-ray spectroscopy (EDX) showed a higher percentage fraction of platinum content by weight, along with carbon and oxygen, which are expected from the capping agent, confirming the purity of the platinum sample. The dynamic light scattering experiment revealed an average hydrodynamic diameter of 353.6 nm for the PEGylated Pt NPs. The cytotoxicity profile of PEGylated Pt NPs was assessed on a normal cell line (L929) and a breast cancer cell line (MCF-7) using the 3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide (MTT) assay. The results revealed an IC50 of 79.18 µg/ml on the cancer cell line and non-toxic behaviour on the normal cell line. In the dual staining apoptosis assay, it was observed that the mortality of cells cultured in conjunction with platinum nanoparticles intensified and the proliferative activity of MCF-7 cells gradually diminished over time in correlation with the increasing concentration of the PEGylated Pt NPs sample. The in vitro DCFH-DA assay for oxidative stress assessment in nanoparticle-treated cells unveiled the mechanistic background of the anticancer activity of PEGylated platinum nanoparticles as ROS-assisted mitochondrial dysfunction.
{"title":"Assessing Anticancer Properties of PEGylated Platinum Nanoparticles on Human Breast Cancer Cell lines using in-vitro Assays.","authors":"Felicia Aswathy W,Jiya Jose,E I Anila","doi":"10.1088/2057-1976/ad795d","DOIUrl":"https://doi.org/10.1088/2057-1976/ad795d","url":null,"abstract":"This study describes the in-vitro cytotoxic effects of PEG-400 (Polyethylene glycol-400)-capped platinum nanoparticles (PEGylated Pt NPs) on both normal and cancer cell lines. Structural characterization was carried out using X-ray diffraction and Raman spectroscopy with an average crystallite size 5.7 nm, and morphological assessment using Scanning electron microscopy (SEM) revealed the presence of spherical platinum nanoparticles. The results of energy-dispersive X-ray spectroscopy (EDX) showed a higher percentage fraction of platinum content by weight, along with carbon and oxygen, which are expected from the capping agent, confirming the purity of the platinum sample. The dynamic light scattering experiment revealed an average hydrodynamic diameter of 353.6 nm for the PEGylated Pt NPs. The cytotoxicity profile of PEGylated Pt NPs was assessed on a normal cell line (L929) and a breast cancer cell line (MCF-7) using the 3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide (MTT) assay. The results revealed an IC50 of 79.18 µg/ml on the cancer cell line and non-toxic behaviour on the normal cell line. In the dual staining apoptosis assay, it was observed that the mortality of cells cultured in conjunction with platinum nanoparticles intensified and the proliferative activity of MCF-7 cells gradually diminished over time in correlation with the increasing concentration of the PEGylated Pt NPs sample. The in vitro DCFH-DA assay for oxidative stress assessment in nanoparticle-treated cells unveiled the mechanistic background of the anticancer activity of PEGylated platinum nanoparticles as ROS-assisted mitochondrial dysfunction.","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":"28 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142194243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-09-11DOI: 10.1088/2057-1976/ad7960
Amir Rouhollahi,Milad Rismanian,Amin Ebrahimi,Olusegun J Ilegbusi,Farhad R Nezami
Freeze casting, a manufacturing technique widely applied in biomedical fields for fabricating biomaterial scaffolds, poses challenges for predicting directional solidification due to its highly nonlinear behavior and complex interplay of process parameters. Conventional numerical methods, such as computational fluid dynamics (CFD), require adequate and accurate boundary condition knowledge, limiting their utility in real-world transient solidification applications due to technical limitations. In this study, we address this challenge by developing a physics-informed neural networks (PINNs) model to predict directional solidification in freeze-casting processes. The PINNs model integrates physical constraints with neural network predictions, requiring significantly fewer predetermined boundary conditions compared to CFD. Through a comparison with CFD simulations, the PINNs model demonstrates comparable accuracy in predicting temperature distribution and solidification patterns. This promising model achieves such a performance with only 5000 data points in space and time, equivalent to 250,000 timesteps, showcasing its ability to predict solidification dynamics with high accuracy. The study's major contributions lie in providing insights into solidification patterns during freeze-casting scaffold fabrication, facilitating the design of biomaterial scaffolds with finely tuned microstructures essential for various tissue engineering applications. Furthermore, the reduced computational demands of the PINNs model offer potential cost and time savings in scaffold fabrication, promising advancements in biomedical engineering research and development.
{"title":"Prediction of directional solidification in freeze casting of biomaterial scaffolds using physics-informed neural networks.","authors":"Amir Rouhollahi,Milad Rismanian,Amin Ebrahimi,Olusegun J Ilegbusi,Farhad R Nezami","doi":"10.1088/2057-1976/ad7960","DOIUrl":"https://doi.org/10.1088/2057-1976/ad7960","url":null,"abstract":"Freeze casting, a manufacturing technique widely applied in biomedical fields for fabricating biomaterial scaffolds, poses challenges for predicting directional solidification due to its highly nonlinear behavior and complex interplay of process parameters. Conventional numerical methods, such as computational fluid dynamics (CFD), require adequate and accurate boundary condition knowledge, limiting their utility in real-world transient solidification applications due to technical limitations. In this study, we address this challenge by developing a physics-informed neural networks (PINNs) model to predict directional solidification in freeze-casting processes. The PINNs model integrates physical constraints with neural network predictions, requiring significantly fewer predetermined boundary conditions compared to CFD. Through a comparison with CFD simulations, the PINNs model demonstrates comparable accuracy in predicting temperature distribution and solidification patterns. This promising model achieves such a performance with only 5000 data points in space and time, equivalent to 250,000 timesteps, showcasing its ability to predict solidification dynamics with high accuracy. The study's major contributions lie in providing insights into solidification patterns during freeze-casting scaffold fabrication, facilitating the design of biomaterial scaffolds with finely tuned microstructures essential for various tissue engineering applications. Furthermore, the reduced computational demands of the PINNs model offer potential cost and time savings in scaffold fabrication, promising advancements in biomedical engineering research and development.","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":"3 1","pages":""},"PeriodicalIF":1.4,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142194245","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}