Pub Date : 2024-12-04DOI: 10.1088/2057-1976/ad96c1
Yoshiyuki Hirano, Yuka Terada
Cherenkov radiation is emitted during x-ray irradiation in a linear accelerator (LINAC). Cherenkov light contains many short wavelength components, including ultraviolet (UV) light, which is well-known for its bactericidal effects. A similar phenomenon is probable for human cancer cells. To assess the effect of Cherenkov light on cell death in x-ray irradiation, we employed simulations and UV cell survival data. We measured the survival rates of HeLa cells exposed to 254 nm (UVC) and 310 nm (UVB) light to determine the 50% lethal dose (LD50) required to kill 50% of the cells. For other wavelengths, we utilized literature values to establish the relationship between wavelength and LD50. Due to the broad range of the Cherenkov light spectrum, we need LD50 as a function of wavelength to estimate cell survival solely from Cherenkov light. A Monte Carlo simulation was used to calculate the fluence distribution of Cherenkov light in a 300 mm3phantom comprised of soft tissue, both with and without absorption of visible light. The latter scenario is considered to be most influenced by Cherenkov light. By combining the fluence distribution and the wavelength-LD50 relationship, we determined the distribution of the survival rate. Our findings indicate that, in the absence of absorption, a radiation dose of approximately 90 Gy or greater is necessary for Cherenkov light to have any effect. As a result, the impact of Cherenkov light on cell survival can be considered negligible for typical dose of 2 Gy.
切伦科夫辐射是在直线加速器(LINAC)中进行 X 射线辐照时发出的。切伦科夫光包含许多短波长成分,其中包括紫外线(UV),它具有众所周知的杀菌作用。人类癌细胞也可能出现类似的现象。为了评估切伦科夫光对 X 射线照射下细胞死亡的影响,我们采用了模拟和紫外线细胞存活数据。我们测量了暴露在 254 纳米(紫外线)和 310 纳米(紫外线)光线下的 HeLa 细胞的存活率,以确定杀死 50% 细胞所需的 50% 致死剂量 (LD50)。对于其他波长,我们利用文献值来确定波长与 LD50 之间的关系。由于切伦科夫光的光谱范围很广,我们需要将 LD50 作为波长的函数,以估算仅来自切伦科夫光的细胞存活率。我们使用蒙特卡洛模拟法计算了切伦科夫光在软组织组成的 300 立方毫米模型中的通量分布,包括吸收可见光和不吸收可见光两种情况。后一种情况被认为受切伦科夫光的影响最大。通过结合通量分布和波长-LD50 关系,我们确定了存活率的分布。我们的研究结果表明,在没有吸收的情况下,需要大约 90 Gy 或更高的辐射剂量,切伦科夫光才能产生任何影响。因此,在典型剂量为 2 Gy 的情况下,切伦科夫光对细胞存活率的影响可以忽略不计。
{"title":"Effect of Cherenkov light on cell survival in x-ray irradiation of LINAC based on Monte Carlo simulation and cell survival measurements.","authors":"Yoshiyuki Hirano, Yuka Terada","doi":"10.1088/2057-1976/ad96c1","DOIUrl":"10.1088/2057-1976/ad96c1","url":null,"abstract":"<p><p>Cherenkov radiation is emitted during x-ray irradiation in a linear accelerator (LINAC). Cherenkov light contains many short wavelength components, including ultraviolet (UV) light, which is well-known for its bactericidal effects. A similar phenomenon is probable for human cancer cells. To assess the effect of Cherenkov light on cell death in x-ray irradiation, we employed simulations and UV cell survival data. We measured the survival rates of HeLa cells exposed to 254 nm (UVC) and 310 nm (UVB) light to determine the 50% lethal dose (LD50) required to kill 50% of the cells. For other wavelengths, we utilized literature values to establish the relationship between wavelength and LD50. Due to the broad range of the Cherenkov light spectrum, we need LD50 as a function of wavelength to estimate cell survival solely from Cherenkov light. A Monte Carlo simulation was used to calculate the fluence distribution of Cherenkov light in a 300 mm<sup>3</sup>phantom comprised of soft tissue, both with and without absorption of visible light. The latter scenario is considered to be most influenced by Cherenkov light. By combining the fluence distribution and the wavelength-LD50 relationship, we determined the distribution of the survival rate. Our findings indicate that, in the absence of absorption, a radiation dose of approximately 90 Gy or greater is necessary for Cherenkov light to have any effect. As a result, the impact of Cherenkov light on cell survival can be considered negligible for typical dose of 2 Gy.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142715203","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-03DOI: 10.1088/2057-1976/ad927f
Ummay Mowshome Jahan, Brianna Blevins, Sergiy Minko, Vladimir V Reukov
Reactive oxygen species (ROS), which are expressed at high levels in many diseases, can be scavenged by cerium oxide nanoparticles (CeO2NPs). CeO2NPs can cause significant cytotoxicity when administered directly to cells, but this cytotoxicity can be reduced if CeO2NPs can be encapsulated in biocompatible polymers. In this study, CeO2NPs were synthesized using a one-stage process, then purified, characterized, and then encapsulated into an electrospun poly-ε-caprolactone (PCL) scaffold. The direct administration of CeO2NPs to RAW 264.7 Macrophages resulted in reduced ROS levels but lower cell viability. Conversely, the encapsulation of nanoceria in a PCL scaffold was shown to lower ROS levels and improve cell survival. The study demonstrated an effective technique for encapsulating nanoceria in PCL fiber and confirmed its biocompatibility and efficacy. This system has the potential to be utilized for developing tissue engineering scaffolds, targeted delivery of therapeutic CeO2NPs, wound healing, and other biomedical applications.
{"title":"Advancing biomedical applications: antioxidant and biocompatible cerium oxide nanoparticle-integrated poly-<i>ε</i>-caprolactone fibers.","authors":"Ummay Mowshome Jahan, Brianna Blevins, Sergiy Minko, Vladimir V Reukov","doi":"10.1088/2057-1976/ad927f","DOIUrl":"10.1088/2057-1976/ad927f","url":null,"abstract":"<p><p>Reactive oxygen species (ROS), which are expressed at high levels in many diseases, can be scavenged by cerium oxide nanoparticles (CeO<sub>2</sub>NPs). CeO<sub>2</sub>NPs can cause significant cytotoxicity when administered directly to cells, but this cytotoxicity can be reduced if CeO<sub>2</sub>NPs can be encapsulated in biocompatible polymers. In this study, CeO<sub>2</sub>NPs were synthesized using a one-stage process, then purified, characterized, and then encapsulated into an electrospun poly-<i>ε</i>-caprolactone (PCL) scaffold. The direct administration of CeO<sub>2</sub>NPs to RAW 264.7 Macrophages resulted in reduced ROS levels but lower cell viability. Conversely, the encapsulation of nanoceria in a PCL scaffold was shown to lower ROS levels and improve cell survival. The study demonstrated an effective technique for encapsulating nanoceria in PCL fiber and confirmed its biocompatibility and efficacy. This system has the potential to be utilized for developing tissue engineering scaffolds, targeted delivery of therapeutic CeO<sub>2</sub>NPs, wound healing, and other biomedical applications.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142614188","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-02DOI: 10.1088/2057-1976/ad9281
Silambarasan Anbumani, Garrett Godfrey, William A Hall, Jainil Shah, Paul Knechtges, Beth Erickson, X Allen Li, George Noid
Purpose. Precise identification of pancreatic tumors is challenging for radiotherapy planning due to the tumor's anatomical variability and poor visualization on 3D cross-sectional imaging. Low extracellular volume fraction (ECVf) correlates with poor vasculature uptake and possible necrosis or hypoxia in pancreatic tumors. This work investigates the feasibility of delineating pancreatic tumors using ECVf spatial distribution maps derived from contrast enhanced dual-energy CT (DECT).Methods and Materials. Data acquired from radiotherapy simulation of 12 pancreatic cancer patients, using a dual source DECT scanner, were analyzed. For each patient, an ECVf distribution of the pancreas was computed from the simultaneously acquired low and high energy DECT series during the late arterial contrast phase combined with the patient's hematocrit level. Volume of interest (VECVf) maps in ECVf distribution of pancreas were identified by applying an appropriate threshold condition and a connected components clustering algorithm. The obtained VECVfwas compared with the clinical gross tumor volume (GTV) using the positive predictive value (PPV), Dice similarity coefficient (DSC), mean distance to agreement (MDA) and true positive rate (TPR).Results. As a proof of concept, our hypothetical threshold condition based on the first quartile separation of the ECVf distribution to find VECVfof the pancreas elucidates the tumor volume within the pancreas. Notably, 7 out of 12 cases studied for VECVfmatched well with the GTV and the mean PPV of 0.83 ± 0.12. The mean MDA (2.83 ± 1.0) of the cases confirms that VECVflies within the tolerance for comparing to the pancreatic GTV. For the remaining 5 cases, the VECVfis substantially affected by other compounding factors, e.g., large cysts, dilate ducts, and thus did not align with the GTVs.Conclusions. This work demonstrated the promising application of the ECVf map, derived from contrast enhanced DECT, to help delineate tumor target for RT planning of pancreatic cancer.
{"title":"Enhancing pancreatic tumor delineation using dual-energy CT-derived extracellular volume fraction map.","authors":"Silambarasan Anbumani, Garrett Godfrey, William A Hall, Jainil Shah, Paul Knechtges, Beth Erickson, X Allen Li, George Noid","doi":"10.1088/2057-1976/ad9281","DOIUrl":"10.1088/2057-1976/ad9281","url":null,"abstract":"<p><p><i>Purpose</i>. Precise identification of pancreatic tumors is challenging for radiotherapy planning due to the tumor's anatomical variability and poor visualization on 3D cross-sectional imaging. Low extracellular volume fraction (ECVf) correlates with poor vasculature uptake and possible necrosis or hypoxia in pancreatic tumors. This work investigates the feasibility of delineating pancreatic tumors using ECVf spatial distribution maps derived from contrast enhanced dual-energy CT (DECT).<i>Methods and Materials</i>. Data acquired from radiotherapy simulation of 12 pancreatic cancer patients, using a dual source DECT scanner, were analyzed. For each patient, an ECVf distribution of the pancreas was computed from the simultaneously acquired low and high energy DECT series during the late arterial contrast phase combined with the patient's hematocrit level. Volume of interest (V<sub>ECVf</sub>) maps in ECVf distribution of pancreas were identified by applying an appropriate threshold condition and a connected components clustering algorithm. The obtained V<sub>ECVf</sub>was compared with the clinical gross tumor volume (GTV) using the positive predictive value (PPV), Dice similarity coefficient (DSC), mean distance to agreement (MDA) and true positive rate (TPR).<i>Results</i>. As a proof of concept, our hypothetical threshold condition based on the first quartile separation of the ECVf distribution to find V<sub>ECVf</sub>of the pancreas elucidates the tumor volume within the pancreas. Notably, 7 out of 12 cases studied for V<sub>ECVf</sub>matched well with the GTV and the mean PPV of 0.83 ± 0.12. The mean MDA (2.83 ± 1.0) of the cases confirms that V<sub>ECVf</sub>lies within the tolerance for comparing to the pancreatic GTV. For the remaining 5 cases, the V<sub>ECVf</sub>is substantially affected by other compounding factors, e.g., large cysts, dilate ducts, and thus did not align with the GTVs.<i>Conclusions</i>. This work demonstrated the promising application of the ECVf map, derived from contrast enhanced DECT, to help delineate tumor target for RT planning of pancreatic cancer.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142614210","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-02DOI: 10.1088/2057-1976/ad94f9
K T Navya, K R Akshatha, Keerthana Prasad, Brij Mohan Kumar Singh
Iron Deficiency Anemia (IDA) is the nutritional disorder that occurs when the body does not contain enough iron, an essential component of hemoglobin (Hb). The World Health Organization (WHO) estimated that IDA is the main cause of anemia in 1.62 billion cases worldwide [1]. Although IDA rarely results in death, it has significant adverse impacts on human health. During diagnosis, the hemoglobin indices show low mean corpuscular hemoglobin and mean corpuscular hemoglobin volume. On Peripheral Blood Smear (PBS) images viewed under a microscope by hematologists, IDA shows hypochromic and microcytic red cells. The purpose of the proposed research is to develop a computer-aided system that will allow hematologists to diagnose and detect diseases more accurately and quickly, therefore saving them time and effort. In order to diagnose or detect clinical disorders, non-invasive techniques like machine learning algorithms are employed. This work aims to identify IDA by utilizing the RetinaNet-Disentangled Dense Object Detector (DDOD) to localize hypochromic microcytes in PBS images. To the best of our knowledge, this is the first work using the object detection technique to detect IDA based on the Red Blood Cell (RBC) morphology. We carried out an extensive quantitative and qualitative evaluation of the model. Additionally, a comparison was made between the performance of our model and other object detection models. The results showed that our approach outperformed state-of-the-art techniques, with a mean average precision that was more than 8% higher.
{"title":"An empirical study of object detection models for the detection of iron deficiency anemia using peripheral blood smear images.","authors":"K T Navya, K R Akshatha, Keerthana Prasad, Brij Mohan Kumar Singh","doi":"10.1088/2057-1976/ad94f9","DOIUrl":"https://doi.org/10.1088/2057-1976/ad94f9","url":null,"abstract":"<p><p>Iron Deficiency Anemia (IDA) is the nutritional disorder that occurs when the body does not contain enough iron, an essential component of hemoglobin (Hb). The World Health Organization (WHO) estimated that IDA is the main cause of anemia in 1.62 billion cases worldwide [1]. Although IDA rarely results in death, it has significant adverse impacts on human health. During diagnosis, the hemoglobin indices show low mean corpuscular hemoglobin and mean corpuscular hemoglobin volume. On Peripheral Blood Smear (PBS) images viewed under a microscope by hematologists, IDA shows hypochromic and microcytic red cells. The purpose of the proposed research is to develop a computer-aided system that will allow hematologists to diagnose and detect diseases more accurately and quickly, therefore saving them time and effort. In order to diagnose or detect clinical disorders, non-invasive techniques like machine learning algorithms are employed. This work aims to identify IDA by utilizing the RetinaNet-Disentangled Dense Object Detector (DDOD) to localize hypochromic microcytes in PBS images. To the best of our knowledge, this is the first work using the object detection technique to detect IDA based on the Red Blood Cell (RBC) morphology. We carried out an extensive quantitative and qualitative evaluation of the model. Additionally, a comparison was made between the performance of our model and other object detection models. The results showed that our approach outperformed state-of-the-art techniques, with a mean average precision that was more than 8% higher.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":"11 1","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142765917","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-02DOI: 10.1088/2057-1976/ad9156
Luca Fedeli, Matteo Benelli, Simone Busoni, Giacomo Belli, Antonio Ciccarone, Angela Coniglio, Marco Esposito, Luca Nocetti, Roberto Sghedoni, Roberto Tarducci, Luisa Altabella, Eleonora Belligotti, Silvia Bettarini, Margherita Betti, Rocchina Caivano, Marco Carnì, Andrea Chiappiniello, Sara Cimolai, Fabiola Cretti, Giacomo Feliciani, Christian Fulcheri, Chiara Gasperi, Mara Giacometti, Fabrizio Levrero, Domenico Lizio, Marta Maieron, Simona Marzi, Lorella Mascaro, Silvia Mazzocchi, Gabriele Meliadò, Sabrina Morzenti, Alessandra Niespolo, Linhsia Noferini, Nadia Oberhofer, Laura Orsingher, Mariagrazia Quattrocchi, Alessandra Ricci, Alessandro Savini, Adriana Taddeucci, Claudia Testa, Paolo Tortoli, Gianni Gobbi, Cesare Gori, Luca Bernardi, Marco Giannelli, Lorenzo Nicola Mazzoni
This large multicenter study of 37 magnetic resonance imaging scanners aimed at characterizing, for the first time, spatial profiles of inaccuracy (namely, Δ-profiles) in apparent diffusion coefficient (ADC) values with varying acquisition plan orientation and diffusion weighting gradient direction, using a statistical approach exploiting unsupervised clustering analysis. A diffusion-weighted imaging (DWI) protocol (b-value: 0-200-400-600-800-1000 s mm-2) with different combinations of acquisition plan orientation (axial/sagittal/coronal) and diffusion weighting gradient direction (anterior-posterior/left-right/feet-head) was acquired on a standard water phantom. For each acquisition setup, Δ-profiles along the 3 main orthogonal directions were characterized by fitting data with a second order polynomial function (ar2+ br + c). Moreover, for each Δ-profile, the maximum minus minimum of the fitting function (δmax) was calculated. The parametersa,b,c, andδmaxshowed some significant variations between scanner systems by different manufacturers or with different static magnetic field strengths, as well as between different acquisition/estimation setups. Unsupervised clustering analysis showed two evident clusters with significantly different values of parametera(p< 0.0001), which can be grouped by acquisition protocol/Δ-profile direction but not scanner system. The results of ∆-profiles confirm an appreciable inter-scanner variability in ADC measurement and corroborate the importance of guarantying the reliability of ADC estimations in clinical or research studies, considering for each scanner system the specific acquisition sequence in terms of acquisition plan orientation and diffusion weighting gradient direction.
{"title":"Unsupervised clustering analysis-based characterization of spatial profiles of inaccuracy in apparent diffusion coefficient values with varying acquisition plan orientation and diffusion weighting gradient direction - a large multicenter phantom study.","authors":"Luca Fedeli, Matteo Benelli, Simone Busoni, Giacomo Belli, Antonio Ciccarone, Angela Coniglio, Marco Esposito, Luca Nocetti, Roberto Sghedoni, Roberto Tarducci, Luisa Altabella, Eleonora Belligotti, Silvia Bettarini, Margherita Betti, Rocchina Caivano, Marco Carnì, Andrea Chiappiniello, Sara Cimolai, Fabiola Cretti, Giacomo Feliciani, Christian Fulcheri, Chiara Gasperi, Mara Giacometti, Fabrizio Levrero, Domenico Lizio, Marta Maieron, Simona Marzi, Lorella Mascaro, Silvia Mazzocchi, Gabriele Meliadò, Sabrina Morzenti, Alessandra Niespolo, Linhsia Noferini, Nadia Oberhofer, Laura Orsingher, Mariagrazia Quattrocchi, Alessandra Ricci, Alessandro Savini, Adriana Taddeucci, Claudia Testa, Paolo Tortoli, Gianni Gobbi, Cesare Gori, Luca Bernardi, Marco Giannelli, Lorenzo Nicola Mazzoni","doi":"10.1088/2057-1976/ad9156","DOIUrl":"10.1088/2057-1976/ad9156","url":null,"abstract":"<p><p>This large multicenter study of 37 magnetic resonance imaging scanners aimed at characterizing, for the first time, spatial profiles of inaccuracy (namely, Δ-profiles) in apparent diffusion coefficient (ADC) values with varying acquisition plan orientation and diffusion weighting gradient direction, using a statistical approach exploiting unsupervised clustering analysis. A diffusion-weighted imaging (DWI) protocol (b-value: 0-200-400-600-800-1000 s mm<sup>-2</sup>) with different combinations of acquisition plan orientation (axial/sagittal/coronal) and diffusion weighting gradient direction (anterior-posterior/left-right/feet-head) was acquired on a standard water phantom. For each acquisition setup, Δ-profiles along the 3 main orthogonal directions were characterized by fitting data with a second order polynomial function (<i>ar</i><sup>2</sup><i>+ br + c</i>). Moreover, for each Δ-profile, the maximum minus minimum of the fitting function (<i>δ</i><sub>max</sub>) was calculated. The parameters<i>a</i>,<i>b</i>,<i>c</i>, and<i>δ</i><sub>max</sub>showed some significant variations between scanner systems by different manufacturers or with different static magnetic field strengths, as well as between different acquisition/estimation setups. Unsupervised clustering analysis showed two evident clusters with significantly different values of parameter<i>a</i>(<i>p</i>< 0.0001), which can be grouped by acquisition protocol/Δ-profile direction but not scanner system. The results of ∆-profiles confirm an appreciable inter-scanner variability in ADC measurement and corroborate the importance of guarantying the reliability of ADC estimations in clinical or research studies, considering for each scanner system the specific acquisition sequence in terms of acquisition plan orientation and diffusion weighting gradient direction.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142614181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-29DOI: 10.1088/2057-1976/ad947b
Agustín Bernardo, Germán Mato, Matías Calandrelli, Jorgelina Medus, Ariel Curiale
Purpose.This paper introduces a deep learning method for myocardial strain analysis while also evaluating the efficacy of the method across a public and a private dataset for cardiac pathology discrimination.Methods.We measure the global and regional myocardial strain in cSAX CMR images by first identifying a ROI centered in the LV, obtaining the cardiac structures (LV, RV and Myo) and estimating the motion of the myocardium. Finally, we compute the strain for the heart coordinate system and report the global and regional strain.Results.We validated our method in two public datasets (ACDC, 80 subjects, and CMAC, 16 subjects) and a private dataset (SSC, 75 subjects), containing healthy and pathological cases (acute myocardial infarction, DCM and HCM). We measured the mean Dice coefficient and Hausdorff distance for segmentation accuracy, and the absolute end point error for motion accuracy, and we conducted a study of the discrimination power of the strain and strain rate between populations of healthy and pathological subjects. The results demonstrated that our method effectively quantifies myocardial strain and strain rate, showing distinct patterns across different cardiac conditions achieving notable statistical significance. Results also show that the method's accuracy is on par with iterative non-parametric registration methods and is also capable of estimating regional strain values.Conclusion.Our method proves to be a powerful tool for cardiac strain analysis, achieving results comparable to other state-of-the-art methods, and computational efficiency over traditional methods.
{"title":"A novel deep learning based method for myocardial strain quantification.","authors":"Agustín Bernardo, Germán Mato, Matías Calandrelli, Jorgelina Medus, Ariel Curiale","doi":"10.1088/2057-1976/ad947b","DOIUrl":"10.1088/2057-1976/ad947b","url":null,"abstract":"<p><p><b><i>Purpose.</i></b>This paper introduces a deep learning method for myocardial strain analysis while also evaluating the efficacy of the method across a public and a private dataset for cardiac pathology discrimination.<b><i>Methods.</i></b>We measure the global and regional myocardial strain in cSAX CMR images by first identifying a ROI centered in the LV, obtaining the cardiac structures (LV, RV and Myo) and estimating the motion of the myocardium. Finally, we compute the strain for the heart coordinate system and report the global and regional strain.<b><i>Results.</i></b>We validated our method in two public datasets (ACDC, 80 subjects, and CMAC, 16 subjects) and a private dataset (SSC, 75 subjects), containing healthy and pathological cases (acute myocardial infarction, DCM and HCM). We measured the mean Dice coefficient and Hausdorff distance for segmentation accuracy, and the absolute end point error for motion accuracy, and we conducted a study of the discrimination power of the strain and strain rate between populations of healthy and pathological subjects. The results demonstrated that our method effectively quantifies myocardial strain and strain rate, showing distinct patterns across different cardiac conditions achieving notable statistical significance. Results also show that the method's accuracy is on par with iterative non-parametric registration methods and is also capable of estimating regional strain values.<b><i>Conclusion.</i></b>Our method proves to be a powerful tool for cardiac strain analysis, achieving results comparable to other state-of-the-art methods, and computational efficiency over traditional methods.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-11-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142680707","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-28DOI: 10.1088/2057-1976/ad8ce2
Luan de Almeida Moura, Terigi Augusto Scardovelli, André Roberto Fernandes da Silva, Mariana da Palma Valério, Higor Barreto Campos, Matheus Leonardo Alves de Camargo, Isabella Titico Moraes, Silvia Cristina Martini, Silvia Regina Matos da Silva Boschi, Tabajara de Oliveira Gonzalez, Alessandro Pereira da Silva
Postural balance is crucial for daily activities, relying on the coordination of sensory systems. Balance impairment, common in the elderly, is a leading cause of mortality in this population. To analyze balance, methods like postural adjustment analysis using electromyography (EMG) have been developed. With age, women tend to experience reduced mobility and greater muscle loss compared to men. However, few studies have focused on postural adjustments in women of different ages using EMG of the lower limbs during laterolateral and anteroposterior movements. This gap could reveal a decrease in muscle activation time with aging, as activation time is vital for postural adjustments. This study aimed to analyze muscle activation times in women of different ages during postural adjustments. Thirty women were divided into two groups: young and older women. A controlled biaxial force platform was used for static and dynamic balance tests while recording lower limb muscle activity using EMG. Data analysis focused on identifying muscle activation points and analyzing postural adjustment times. Results showed significant differences in muscle activation times between the two groups across various muscles and platform tilt conditions. Younger women had longer muscle activation times than older women, particularly during laterolateral platform inclinations. In anteroposterior movements, older women exhibited longer activation times compared to their laterolateral performance, with fewer differences between the groups. Overall, older women had shorter muscle activation times than younger women, suggesting a potential indicator of imbalance and increased fall risk.
{"title":"Analysis of anticipatory and compensatory postural adjustment in women of different age groups using surface electromyography.","authors":"Luan de Almeida Moura, Terigi Augusto Scardovelli, André Roberto Fernandes da Silva, Mariana da Palma Valério, Higor Barreto Campos, Matheus Leonardo Alves de Camargo, Isabella Titico Moraes, Silvia Cristina Martini, Silvia Regina Matos da Silva Boschi, Tabajara de Oliveira Gonzalez, Alessandro Pereira da Silva","doi":"10.1088/2057-1976/ad8ce2","DOIUrl":"10.1088/2057-1976/ad8ce2","url":null,"abstract":"<p><p>Postural balance is crucial for daily activities, relying on the coordination of sensory systems. Balance impairment, common in the elderly, is a leading cause of mortality in this population. To analyze balance, methods like postural adjustment analysis using electromyography (EMG) have been developed. With age, women tend to experience reduced mobility and greater muscle loss compared to men. However, few studies have focused on postural adjustments in women of different ages using EMG of the lower limbs during laterolateral and anteroposterior movements. This gap could reveal a decrease in muscle activation time with aging, as activation time is vital for postural adjustments. This study aimed to analyze muscle activation times in women of different ages during postural adjustments. Thirty women were divided into two groups: young and older women. A controlled biaxial force platform was used for static and dynamic balance tests while recording lower limb muscle activity using EMG. Data analysis focused on identifying muscle activation points and analyzing postural adjustment times. Results showed significant differences in muscle activation times between the two groups across various muscles and platform tilt conditions. Younger women had longer muscle activation times than older women, particularly during laterolateral platform inclinations. In anteroposterior movements, older women exhibited longer activation times compared to their laterolateral performance, with fewer differences between the groups. Overall, older women had shorter muscle activation times than younger women, suggesting a potential indicator of imbalance and increased fall risk.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142543420","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Objective.While the biological effective dose (BED) has been used to estimate the damage to tumor cells in radiotherapy, BED does not consider intrafractional interruption (IFI) occurring during irradiation. We aim to develop a framework to evaluate the decrease in BED [ΔBED] and to create a plan compensating for the decrease by IFI.Approach.ΔBEDwas calculated using a model based on the microdosimetric kinetic model (MKM) for four brain tumor cases treated using a volumetric-modulated arc therapy. Four biologically compensated plans (BCPs) were created in the treatment planning system by a single-time optimization using a base plan consideringΔBEDcreated in in-house software and optimization objectives for the original clinically delivered plan to achieve a homogeneous BED distribution within the planning target volume (PTV). The BED-volume histogram was evaluated for non-compensated plan and BCP with different timepoint of interruption, a percentage of gantry rotation angle (GRA) before interruption in planned GRA,ηand duration of interruptionτ. Characteristics of the dose accumulation were analyzed for different collimator angle sets, Plan A (10°, 85°) and Plan B (45° and 315°), for the first case.Main Results.Hot spots in theΔBEDdistribution forη= 25%, 50%, and 75% were observed at superior-and-interior ends, central region, and peripheral region in PTV, respectively. These behaviors could be understood by characteristics of the MKM-based model producing maximumΔBEDat 50% of the dose accumulation.ΔBED50%ranged 4.5%-6.6%, 5.0%-7.3%, and 5.3%-7.7% forτ= 60, 90, and 120 min, respectively. Plan A showed fast dose accumulation at superior and inferior edges while slow on peripheries in the lateral dose profile. Plan B showed more homogeneous PD distributions than Plan A during irradiation.Significance.The developed framework successfully evaluated and compensated for the decreased BED distribution.
目的:虽然生物有效剂量(BED)已被用于估算放疗对肿瘤细胞的损伤,但 BED 并未考虑照射过程中发生的分段内中断(IFI)。我们的目标是建立一个框架来评估 BED [ΔBED]的减少,并制定一个计划来补偿 IFI 的减少。使用基于微剂量测定动力学模型(MKM)的模型,对四例使用容积调制电弧疗法治疗的脑肿瘤病例计算ΔBED。在治疗计划系统中创建了四个生物补偿计划(BCP),使用内部软件创建的考虑ΔBED的基础计划和原始临床实施计划的优化目标进行一次性优化,以实现计划目标体积(PTV)内均匀的BED分布。在不同的中断时间点、中断前龙门旋转角(GRA)占计划GRA的百分比η和中断持续时间τ下,对无补偿计划和BCP的BED-体积直方图进行了评估。针对第一种情况,分析了不同准直器角度组(计划 A(10°、85°)和计划 B(45°和 315°))的剂量累积特征。在η= 25%、50% 和 75% 时,ΔBED 分布的热点分别出现在 PTV 的上端和内端、中心区域和外围区域。这些行为可以通过基于 MKM 的模型在 50%剂量累积时产生最大 ΔBED 的特征来理解。τ=60、90和120分钟时,ΔBED50%分别为4.5-6.6%、5.0-7.3%和5.3-7.7%。在横向剂量分布图中,图 A 显示上边缘和下边缘的剂量累积较快,而外围较慢。在照射过程中,B 计划比 A 计划显示出更均匀的 PD 分布。所开发的框架成功评估并补偿了减少的 BED 分布。
{"title":"Dose compensation for decreased biological effective dose due to intrafractional interruption during radiotherapy: integration with a commercial treatment planning system.","authors":"Hikaru Yamaguchi, Daisuke Kawahara, Akito S Koganezawa, Nobuki Imano, Yuji Murakami, Ikuno Nishibuchi, Eiji Shiba, Yasushi Nagata","doi":"10.1088/2057-1976/ad9280","DOIUrl":"10.1088/2057-1976/ad9280","url":null,"abstract":"<p><p><i>Objective.</i>While the biological effective dose (BED) has been used to estimate the damage to tumor cells in radiotherapy, BED does not consider intrafractional interruption (IFI) occurring during irradiation. We aim to develop a framework to evaluate the decrease in BED [ΔBED] and to create a plan compensating for the decrease by IFI.<i>Approach.</i>ΔBEDwas calculated using a model based on the microdosimetric kinetic model (MKM) for four brain tumor cases treated using a volumetric-modulated arc therapy. Four biologically compensated plans (BCPs) were created in the treatment planning system by a single-time optimization using a base plan consideringΔBEDcreated in in-house software and optimization objectives for the original clinically delivered plan to achieve a homogeneous BED distribution within the planning target volume (PTV). The BED-volume histogram was evaluated for non-compensated plan and BCP with different timepoint of interruption, a percentage of gantry rotation angle (GRA) before interruption in planned GRA,ηand duration of interruptionτ. Characteristics of the dose accumulation were analyzed for different collimator angle sets, Plan A (10°, 85°) and Plan B (45° and 315°), for the first case.<i>Main Results.</i>Hot spots in theΔBEDdistribution forη= 25%, 50%, and 75% were observed at superior-and-interior ends, central region, and peripheral region in PTV, respectively. These behaviors could be understood by characteristics of the MKM-based model producing maximumΔBEDat 50% of the dose accumulation.ΔBED50%ranged 4.5%-6.6%, 5.0%-7.3%, and 5.3%-7.7% forτ= 60, 90, and 120 min, respectively. Plan A showed fast dose accumulation at superior and inferior edges while slow on peripheries in the lateral dose profile. Plan B showed more homogeneous PD distributions than Plan A during irradiation.<i>Significance.</i>The developed framework successfully evaluated and compensated for the decreased BED distribution.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142614208","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-26DOI: 10.1088/2057-1976/ad974a
Zhouqiang Yang, Peiling Cui, Yanbin Li
Magnetic shielding room (MSR) is one of the necessary equipment for measuring magnetocardiography (MCG) and magnetoencephalography (MEG). The traditional closed MSR only focuses on the indicators of the shielded magnetic field, and ignores the patient's feelings within the MSR. In this paper, an open-window MSR is proposed to solve the problem that patients have difficulty in communicating with the outside of closed MSR and have closed fear. The simulation results show that the size and distribution trend of the residual magnetic field in the inner working area of the MSR with shield-duct and active magnetic compensation coil is similar to that of the closed MSR. The method proposed in this paper provides a way to improve the comfort of patients in MSR for measuring MCG and MEG in humans.
磁屏蔽室(MSR)是测量磁心动图(MCG)和脑磁图(MEG)的必要设备之一。传统的封闭式磁屏蔽室只关注屏蔽磁场的指标,而忽略了患者在磁屏蔽室内的感受。本文提出了一种开窗式 MSR,以解决患者在封闭式 MSR 中难以与外界交流、产生封闭恐惧的问题。仿真结果表明,带屏蔽导管和主动磁补偿线圈的 MSR 内部工作区残余磁场的大小和分布趋势与封闭式 MSR 相似。本文提出的方法为提高患者在 MSR 中测量 MCG 和 MEG 的舒适度提供了一种途径。
{"title":"Open-window MSR Design with Active Magnetic Compensation Coil based on COMSOL Multiphysics.","authors":"Zhouqiang Yang, Peiling Cui, Yanbin Li","doi":"10.1088/2057-1976/ad974a","DOIUrl":"https://doi.org/10.1088/2057-1976/ad974a","url":null,"abstract":"<p><p>Magnetic shielding room (MSR) is one of the necessary equipment for measuring magnetocardiography (MCG) and magnetoencephalography (MEG). The traditional closed MSR only focuses on the indicators of the shielded magnetic field, and ignores the patient's feelings within the MSR. In this paper, an open-window MSR is proposed to solve the problem that patients have difficulty in communicating with the outside of closed MSR and have closed fear. The simulation results show that the size and distribution trend of the residual magnetic field in the inner working area of the MSR with shield-duct and active magnetic compensation coil is similar to that of the closed MSR. The method proposed in this paper provides a way to improve the comfort of patients in MSR for measuring MCG and MEG in humans.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142724656","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-25DOI: 10.1088/2057-1976/ad9155
Erika Maria Garcia Cerqueira, Raquel Emanuela de Medeiros, Fernando da Silva Fiorin, Mariane de Arújo E Silva, Ramón Hypolito Lima, André Felipe Oliveirade Azevedo Dantas, Abner Cardoso Rodrigues, Denis Delisle-Rodriguez
Objective.This study proposes a closed-loop brain-machine interface (BMI) based on spinal cord stimulation to inhibit epileptic seizures, applying a semi-supervised machine learning approach that learns from Local Field Potential (LFP) patterns acquired on the pre-ictal (preceding the seizure) condition.Approach.LFP epochs from the hippocampus and motor cortex are band-pass filtered from 1 to 13 Hz, to obtain the time-frequency representation using the continuous Wavelet transform, and successively calculate the phase lock values (PLV). As a novelty, theZ-score-based PLV normalization using both modifiedk-means and Davies-Bouldin's measure for clustering is proposed here. Consequently, a generic seizure's detector is calibrated for detecting seizures on the normalized PLV, and enables the spinal cord stimulation for periods of 30 s in a closed-loop, while the BMI system detects seizure events. To calibrate the proposed BMI, a dataset with LFP signals recorded on five Wistar rats during basal state and epileptic crisis was used. The epileptic crisis was induced by injecting pentylenetetrazol (PTZ). Afterwards, two experiments without/with our BMI were carried out, inducing epileptic crisis by PTZ in Wistar rats.Main results.Stronger seizure events of high LFP amplitudes and long time periods were observed in the rat, when the BMI system was not used. In contrast, short-time seizure events of relative low intensity were observed in the rat, using the proposed BMI. The proposed system detected on unseen data the synchronized seizure activity in the hippocampus and motor cortex, provided stimulation appropriately, and consequently decreased seizure symptoms.Significance.Low-frequency LFP signals from the hippocampus and motor cortex, and cord spinal stimulation can be used to develop accurate closed-loop BMIs for early epileptic seizures inhibition, as an alternative treatment.
{"title":"Local field potential-based brain-machine interface to inhibit epileptic seizures by spinal cord electrical stimulation.","authors":"Erika Maria Garcia Cerqueira, Raquel Emanuela de Medeiros, Fernando da Silva Fiorin, Mariane de Arújo E Silva, Ramón Hypolito Lima, André Felipe Oliveirade Azevedo Dantas, Abner Cardoso Rodrigues, Denis Delisle-Rodriguez","doi":"10.1088/2057-1976/ad9155","DOIUrl":"10.1088/2057-1976/ad9155","url":null,"abstract":"<p><p><i>Objective.</i>This study proposes a closed-loop brain-machine interface (BMI) based on spinal cord stimulation to inhibit epileptic seizures, applying a semi-supervised machine learning approach that learns from Local Field Potential (LFP) patterns acquired on the pre-ictal (preceding the seizure) condition.<i>Approach.</i>LFP epochs from the hippocampus and motor cortex are band-pass filtered from 1 to 13 Hz, to obtain the time-frequency representation using the continuous Wavelet transform, and successively calculate the phase lock values (PLV). As a novelty, the<i>Z</i>-score-based PLV normalization using both modified<i>k</i>-means and Davies-Bouldin's measure for clustering is proposed here. Consequently, a generic seizure's detector is calibrated for detecting seizures on the normalized PLV, and enables the spinal cord stimulation for periods of 30 s in a closed-loop, while the BMI system detects seizure events. To calibrate the proposed BMI, a dataset with LFP signals recorded on five Wistar rats during basal state and epileptic crisis was used. The epileptic crisis was induced by injecting pentylenetetrazol (PTZ). Afterwards, two experiments without/with our BMI were carried out, inducing epileptic crisis by PTZ in Wistar rats.<i>Main results.</i>Stronger seizure events of high LFP amplitudes and long time periods were observed in the rat, when the BMI system was not used. In contrast, short-time seizure events of relative low intensity were observed in the rat, using the proposed BMI. The proposed system detected on unseen data the synchronized seizure activity in the hippocampus and motor cortex, provided stimulation appropriately, and consequently decreased seizure symptoms.<i>Significance.</i>Low-frequency LFP signals from the hippocampus and motor cortex, and cord spinal stimulation can be used to develop accurate closed-loop BMIs for early epileptic seizures inhibition, as an alternative treatment.</p>","PeriodicalId":8896,"journal":{"name":"Biomedical Physics & Engineering Express","volume":" ","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142614229","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}