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An overview of fungal taxonomic, functional, and genetic diversity in coastal and oceanic biomes in megadiverse Mexico 墨西哥巨大多样性海岸和海洋生物群落真菌分类、功能和遗传多样性综述
IF 2.2 4区 生物学 Q2 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-09-04 DOI: 10.1515/bot-2023-0031
Julio Olguin, P. Velez, V. Solís-Weiss, Alejandra Barrios, Allison K. Walker, Guadalupe Ponce-Vélez, María C. González, Mario Figueroa, Alfonso Botello
Abstract A comprehensive literature review of mycodiversity in sandy beaches and oceanic environments in Mexico is presented through the analysis of published works from 1949 to early 2023. In addition, four unexplored sandy beaches in the Pacific Ocean and Gulf of California were sampled in order to fill knowledge gaps in terms of sampling biases. Marine fungi of Mexico were reported from water column, sediment, and debris samples collected in sandy beaches, open ocean, deep-sea plains, hydrothermal vents, and oxygen minimum zones in the Gulf of Mexico, the Pacific Ocean, the Gulf of California, and the Caribbean Sea. The taxonomic, functional, and genetic diversity, as well as distribution patterns and potential use of marine fungal genetic resources are discussed. A list of 126 species in 83 genera, 40 families, 25 orders, 12 classes, three phyla and one subphylum (excluding non-cultured taxa) of marine fungi is documented from Mexico. Lastly, we identified areas that would benefit from additional research, including the exploration of further deep-sea biomes in the Pacific Ocean, and coastal areas covering ecoregions in the states of Sonora, Sinaloa, Nayarit, Michoacán, and Oaxaca.
摘要通过对1949年至2023年初发表的著作的分析,对墨西哥沙滩和海洋环境中的真菌多样性进行了全面的文献综述。此外,对太平洋和加利福尼亚湾的四个未经勘探的沙滩进行了采样,以填补采样偏差方面的知识空白。据报道,墨西哥的海洋真菌来自墨西哥湾、太平洋、加利福尼亚湾和加勒比海的沙滩、公海、深海平原、热液喷口和氧气最低区采集的水柱、沉积物和碎片样本。讨论了海洋真菌遗传资源的分类、功能和遗传多样性,以及分布模式和潜在用途。墨西哥记录了海洋真菌的83属、40科、25目、12纲、3门和1亚门(不包括非培养类群)中的126种。最后,我们确定了将受益于额外研究的地区,包括在太平洋进一步勘探深海生物群落,以及覆盖索诺拉州、锡那罗亚州、纳亚里特州、米却肯州和瓦哈卡州生态区的沿海地区。
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引用次数: 0
Alveolate species of Mastogloia (Bacillariophyceae, Mastogloiales), including M. frickei Hustedt 1933 from Guam and two renamed species from Florida Mastogloia的泡状物种(Bacillarophyceae,Mastogloales),包括1933年来自关岛的M.frickei Hustedt和两个来自佛罗里达州的更名物种
IF 2.2 4区 生物学 Q2 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-08-22 DOI: 10.1515/bot-2023-0039
C. Lobban, T. Frankovich
Abstract Mastogloia frickei Hustedt was found in Guam and studied with scanning electron microscopy. A species known by that name in Florida/Bahamas is shown to be a different species and is described as Mastogloia floridensis sp. nov. Both have alveolate striae, which is unusual in the genus. A third alveolate species was present in Florida samples and had been misidentified previously. It is described as Mastogloia lucayensis sp. nov. Ultrastructure observations of these species expand the diversity of alveolate stria morphology.
摘要:在关岛发现了乳齿舌虫,并用扫描电镜对其进行了研究。在佛罗里达/巴哈马群岛有一种以这个名字命名的物种被证明是一个不同的物种,被描述为Mastogloia floridensis sp. 11 .两者都有槽状条纹,这在该属中是不寻常的。在佛罗里达州的样本中发现了第三种肺泡菌,以前曾被错误地鉴定过。本文将其命名为Mastogloia lucayensis sp. 11 .。这些物种的超微结构观察扩大了其牙槽纹形态的多样性。
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引用次数: 0
Surf-diatoms from sandy beaches on the Eastern Coast of South America (Brazil): the identification of Anaulus Ehrenberg and Asterionellopsis Round 南美(巴西)东海岸沙滩上的冲浪硅藻:aululesehrenberg和Asterionellopsis Round的鉴定
IF 2.2 4区 生物学 Q2 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-08-21 DOI: 10.1515/bot-2022-0067
Andréa de Oliveira da Rocha Franco, M. Ashworth, Debbie Du Preez, E. Campbell, R. Maggioni, S. Manning, C. Odebrecht
Abstract “Surf diatoms” can form high biomass in the surf zone of sandy beaches around the world, Asterionellopsis and Anaulus being the main genera of this group in Brazil. Asterionellopsis glacialis was considered a cosmopolitan species, and taxonomic studies using molecular and morphological tools showed that A. glacialis is a complex with cryptic and semicryptic species. So, it would be plausible to suppose that Anaulus australis, another surf zone patch-forming diatom with wide latitudinal occurrence could also be part of a species complex. We collected and identified Anaulus and Asterionellopsis strains from tropical, subtropical and warm temperate sandy beaches on the east coast of South America (Brazil) based on genetic divergence, phylogeny, single-locus automated species delimitation methods (both genera), and frustule ultrastructure (Anaulus). Anaulus and Asterionellopsis showed contrasting diversity patterns and spatial distribution: a single species of Anaulus australis was registered in tropical and subtropical beaches, while at least three species of Asterionellopsis: A. tropicalis, A. thurstonii and A. guyunusae were observed at different latitudes, indicating that Asterionellopsis species have distinct ecological requirements. Asterionellopsis thurstonii was previously reported in Europe and it is documented here for the first time in the Southern Hemisphere. The different diversity patterns between these two surf diatom genera suggest that they are likely to have distinct ages, and dispersion and/or speciation processes.
“冲浪硅藻”可以在世界各地的沙滩冲浪带形成高生物量,巴西的Asterionellopsis和anulus是该群的主要属。冰川Asterionellopsis glacialis被认为是一个世界性的物种,利用分子和形态学手段进行的分类研究表明,冰川Asterionellopsis glacialis是一个由隐种和半隐种组成的复合体。因此,假设南环藻,另一种具有广泛纬度分布的冲浪带斑块形成硅藻也可能是物种复合体的一部分,这是合理的。根据遗传分化、系统发育、单位点自动物种划分方法(两属)和结体超微结构(环孢菌)对南美(巴西)东海岸热带、亚热带和暖温带沙滩上的环孢菌和Asterionellopsis菌株进行鉴定。在热带和亚热带滩地均有1种南环螺,而在不同纬度均有至少3种南环螺,分别为a . tropicalis、a . thurstonii和a . guyunusae,表明南环螺具有不同的生态需求。thurstonii Asterionellopsis先前在欧洲有报道,在南半球首次被记录。这两种硅藻属之间不同的多样性模式表明它们可能具有不同的年龄、分散和/或物种形成过程。
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引用次数: 0
Frontmatter 头版头条
4区 生物学 Q2 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-08-01 DOI: 10.1515/bot-2023-frontmatter4
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引用次数: 0
In this issue 本期
IF 2.2 4区 生物学 Q2 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-08-01 DOI: 10.1515/bot-2023-graphabs4
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引用次数: 0
Updates on the classification and numbers of marine fungi 海洋真菌的分类与数量研究进展
IF 2.2 4区 生物学 Q2 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-07-21 DOI: 10.1515/bot-2023-0032
Mark S. Calabon, E. Jones, K. Pang, M. Abdel-Wahab, Jingwan Jin, B. Devadatha, R. B. Sadaba, C. C. Apurillo, K. Hyde
Abstract This article revises the documented diversity of known marine fungi from nine phyla, 33 classes, 107 orders, 273 families, 767 genera and 1898 species reported worldwide. A member of the Aphelidiomycota, Pseudaphelidium drebesii, is reported for the first time from the marine environment, on a diatom. Likewise, the phylum Mortierellomycota is listed following taxonomic changes, as are six subclasses: Chaetothyriomycetidae, Savoryellomycetidae, Sclerococcomycetidae, Agaricostilbomycetidae, Auriculariomycetidae and Aphelidiomycotina. Thirty-three orders and 105 family names with marine species are added to the checklist, along with 641 species in 228 genera, bringing the total to 1898. New additions of species added to the list of marine fungi are highlighted. Four new combinations are proposed: Stigmatodiscus mangrovei, Diaporthe krabiensis and Diaporthe xylocarpi, while the hyphomycete Humicola alopallonella is referred to the genus Halosphaeriopsis, as Halosphaeriopsis alopallonella.
摘要本文对世界范围内报道的9门33纲107目273科767属1898种已知海洋真菌的多样性进行了修订。首次从海洋环境中报道了一种硅藻属Aphelidiomycota成员,即Pseudaphelidium drebesii。同样,Mortiellomycota门在分类学上也发生了变化,还有六个亚类:Chaetothyriomycetidae、Savoryellomycetidae、Scleococcomycetida、Agaricostilbomycetida、Auriculariomyceticae和Aphelidiomyctina。清单中增加了33目105科的海洋物种,以及228属641种,总数达到1898种。海洋真菌名录中新增的物种也得到了强调。提出了四个新的组合:芒氏Stigmatodiscus mangrowei、克拉比氏Diaporthe krabiensis和木壳Diaporthe xylocarpi,而Humicola alopallonella hyphomycete则被称为卤球藻属,即卤球藻。
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引用次数: 2
Diversity of fungi from marine inundated wood from the Bay of Fundy, Nova Scotia, Canada. 加拿大新斯科舍省芬迪湾海洋淹没木材中真菌的多样性
IF 1.6 4区 生物学 Q2 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-07-13 eCollection Date: 2023-08-01 DOI: 10.1515/bot-2023-0005
Sarah J Adams, Allison K Walker

Marine fungi play an integral role in the decomposition of intertidal organic substrata but remain understudied in cold-water habitats including Atlantic Canada. Marine inundated wood from the intertidal zone was sampled from 30 sites along the Bay of Fundy coastline in Nova Scotia, Canada. Wood types studied included attached and loose intertidal wood, and driftwood. Emergent fungi were cultured and identified using ITS (internal transcribed spacers) rDNA barcoding. Two hundred and twenty cultures representing 86 fungi are reported. Sixty-one fungi were new records for the Bay of Fundy, 41 are first records from the marine environment, and 19 fungi are potentially new to science. Fungi identified included eight obligate marine fungi, with the remaining fungi being facultatively marine. Eight ascomycetes were soft rot fungi; this ecological strategy for decaying woody material in cold-water marine environments is discussed. Historical records and roles of wood type and site on fungal colonization are discussed.

海洋真菌在潮间带有机基质的分解中起着不可或缺的作用,但在包括加拿大大西洋在内的冷水生境中仍未得到充分研究。从加拿大新斯科舍省芬迪湾沿岸的30个地点取样了潮间带的海洋淹没木材。研究的木材类型包括附着和松散的潮间带木材和浮木。利用ITS (internal transcripiting spacers) rDNA条形码技术对萌发真菌进行了培养和鉴定。共报道了220个培养物,代表86种真菌。61种真菌是芬迪湾的新记录,41种是海洋环境的首次记录,19种真菌可能是科学上的新记录。鉴定的真菌包括8种专性海洋真菌,其余真菌为兼性海洋真菌。8个子囊菌为软腐菌;讨论了这种在冷水海洋环境中腐烂木质材料的生态策略。讨论了木材类型和地点对真菌定植的历史记录和作用。
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引用次数: 0
A review of polyunsaturated fatty acids (PUFA) of marine zoosporic microorganisms and their commercialization 海洋动物孢子菌多不饱和脂肪酸及其商业化研究进展
IF 2.2 4区 生物学 Q2 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-06-30 DOI: 10.1515/bot-2022-0073
Diganta Kumar Saikia, C. Chikkaputtaiah, N. Velmurugan
Abstract Long-chain polyunsaturated fatty acids (LC-PUFA) are nutritionally and pharmacologically well-recognized beneficial compounds widely used as nutrient supplements for various applications. As the human body cannot accomplish de novo synthesis of PUFA, we depend on exogenous bioresources for the supply of these essential PUFA for day-to-day activities. The PUFA global market is expected to reach about US$ 9.7 billion by 2032. The recent drop in natural fish catch and global climate change severely hamper the global PUFA supply chain. As a sustainable, promising resource, marine zoosporic microorganisms are considered to be safe and alternative primary producers of beneficial PUFAs for direct and indirect human consumption. However, by considering the limitations associated with strain efficiency, final product yield and production cost, more viable low-cost production strategies and establishment of highly efficient, stable, high production cell lines specific for marine zoosporic microbes are essential to meet global PUFA market demand. The exploration of the latest techniques for research and development could shape the dynamics better for the global market for marine zoosporic organism-based PUFA products. Therefore, this review first summarizes low-cost production and strain improvement strategies, and later highlights the advantages and commercial prospects for marine zoosporic microbe-derived PUFA.
摘要长链多不饱和脂肪酸(LC-PUFA)是一种在营养和药理学上公认的有益化合物,被广泛用作各种营养补充剂。由于人体不能完成PUFA的从头合成,我们依靠外源性生物资源来供应这些日常活动所需的必需PUFA。到2032年,PUFA全球市场预计将达到约97亿美元。最近自然捕鱼量的下降和全球气候变化严重阻碍了全球PUFA供应链。作为一种可持续的、有发展前景的资源,海洋动物孢子菌被认为是人类直接或间接消费的有益pufa的安全的替代初级生产者。然而,考虑到菌株效率、最终产品产量和生产成本的限制,更可行的低成本生产策略和建立高效、稳定、高产的海洋动物孢子菌专用细胞系是满足全球PUFA市场需求的必要条件。探索最新的研究和开发技术可以更好地塑造基于海洋动物孢子生物的PUFA产品的全球市场动态。因此,本文首先综述了海洋动物孢子菌源PUFA的低成本生产和菌株改良策略,然后重点介绍了海洋动物孢子菌源PUFA的优势和商业前景。
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引用次数: 0
Diversity of fungi isolated from carapace and gut of the marine crab Portunus sanguinolentus in northern waters of Taiwan 台湾北部海域海蟹壳肠分离真菌的多样性
IF 2.2 4区 生物学 Q2 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-06-27 DOI: 10.1515/bot-2022-0081
Ami Shaumi, U-Cheang Cheng, Sheng-Yu Guo, E. Jones, T. Chan, K. Pang
Abstract The fungal community associated with marine crabs is poorly known, except for the fungi causing diseases of marine animals of economic value. In this study we examined the diversity of fungi cultured from carapace and gut of the marine crab Portunus sanguinolentus, and the identification was based on nucleotide BLAST search results of the internal transcribed spacers of rDNA (ITS). A total of 256 fungal isolates representing 23 species were cultured from seven individuals of P. sanguinolentus including two unidentified species. The majority of the species belong to the Ascomycota, while three species of the Basidiomycota were isolated from the gut. Overall, Candida tropicalis (45.70 %, percentage occurrence), Apiotrichum lignicola (8.98 %) and Rhodotorula sp. (8.20 %) were the dominant fungi on the crab. The most dominant fungi on the carapace were C. tropicalis (66.95 %), Emericellopsis maritima (8.47 %), A. lignicola and Purpureocillium lilacinum (both 4.24 %). In the gut, C. tropicalis (27.54 %), A. lignicola (16.67 %), Rhodotorula sp. (15.22 %) and Fusarium solani (14.49 %) were dominant. The fungal diversity in the gut of P. sanguinolentus was higher than on the carapace according to the diversity indices. Although some of the isolated fungi were reported to be pathogenic, none were reported as pathogens of crabs, and no disease symptoms were noticed from the crab samples.
除具有经济价值的引起海洋动物疾病的真菌外,与海蟹有关的真菌群落知之甚少。本研究对从海蟹(Portunus sanguinolentus)的甲壳和肠道中培养的真菌进行了多样性研究,并基于rDNA (ITS)内部转录间隔段的核苷酸BLAST搜索结果进行了鉴定。结果表明,从7株血樟(P. sanguinolentus)中共分离出23种256株真菌,其中2种尚未鉴定。大多数菌种属于子囊菌门,而担子菌门中有3种是从肠道中分离出来的。总体而言,热带假丝酵母(45.70 %,发生率)、木灰顶霉(8.98 %)和红霉菌(8.20 %)是蟹的优势真菌。甲壳上的优势真菌依次为C. tropical alis(66.95 %)、Emericellopsis maritima(8.47 %)、A. lignicola和Purpureocillium lilacinum(4.24 %)。肠道菌群以热带镰刀菌(27.54 %)、木霉(16.67 %)、红霉菌(15.22 %)和茄枯萎菌(14.49 %)为主。从真菌多样性指数来看,血羊藿肠道真菌多样性高于甲壳真菌多样性。虽然一些分离的真菌被报道为致病性,但没有报道为螃蟹的病原体,螃蟹样本中没有发现疾病症状。
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引用次数: 0
Recent progress in marine mycological research in different countries, and prospects for future developments worldwide 国内外海洋真菌学研究的最新进展及对未来发展的展望
IF 2.2 4区 生物学 Q2 MARINE & FRESHWATER BIOLOGY Pub Date : 2023-06-27 DOI: 10.1515/bot-2023-0015
K. Pang, E. Jones, M. Abdel-Wahab, S. J. Adams, A. Alves, E. Azevedo, A. Bahkali, M. Barata, G. Burgaud, M. Caeiro, Mark S. Calabon, B. Devadatha, J. Dupont, S. Fryar, M. C. González, Jing Jin, M. Mehiri, L. Meslet-Cladière, S. Prado, T. Rämä, M. Reich, C. Roullier, V. V. Sarma, L. Tibell, Sanja Tibell, P. Velez, A. K. Walker
Abstract Early research on marine fungi was mostly descriptive, with an emphasis on their diversity and taxonomy, especially of those collected at rocky shores on seaweeds and driftwood. Subsequently, further substrata (e.g. salt marsh grasses, marine animals, seagrasses, sea foam, seawater, sediment) and habitats (coral reefs, deep-sea, hydrothermal vents, mangroves, sandy beaches, salt marshes) were explored for marine fungi. In parallel, research areas have broadened from micro-morphology to ultrastructure, ecophysiology, molecular phylogenetics, biogeography, biodeterioration, biodegradation, bioprospecting, genomics, proteomics, transcriptomics and metabolomics. Although marine fungi only constitute a small fraction of the global mycota, new species of marine fungi continue to be described from new hosts/substrata of unexplored locations/habitats, and novel bioactive metabolites have been discovered in the last two decades, warranting a greater collaborative research effort. Marine fungi of Africa, the Americas and Australasia are under-explored, while marine Chytridiomycota and allied taxa, fungi associated with marine animals, the functional roles of fungi in the sea, and the impacts of climate change on marine fungi are some of the topics needing more attention. In this article, currently active marine mycologists from different countries have written on the history and current state of marine fungal research in individual countries highlighting their strength in the subject, and this represents a first step towards a collaborative inter- and transdisciplinary research strategy.
早期对海洋真菌的研究大多是描述性的,重点是它们的多样性和分类学,特别是在岩石海岸的海藻和浮木上收集的海洋真菌。随后,进一步探索了海底(如盐沼草、海洋动物、海草、海泡沫、海水、沉积物)和栖息地(珊瑚礁、深海、热液喷口、红树林、沙滩、盐沼)以寻找海洋真菌。与此同时,研究领域也从微观形态学扩展到超微结构、生态生理学、分子系统发育学、生物地理学、生物变质、生物降解、生物勘探、基因组学、蛋白质组学、转录组学和代谢组学。虽然海洋真菌只占全球真菌的一小部分,但新的海洋真菌物种不断从新的宿主/未开发地点/栖息地的基质中被描述,并且在过去的二十年中发现了新的生物活性代谢物,需要更大的合作研究努力。非洲、美洲和大洋洲的海洋真菌尚未得到充分的研究,而海洋壶菌门及其相关分类群、与海洋动物相关的真菌、真菌在海洋中的功能作用以及气候变化对海洋真菌的影响是有待进一步研究的课题。在这篇文章中,来自不同国家的活跃的海洋真菌学家撰写了各自国家海洋真菌研究的历史和现状,突出了他们在这一学科上的实力,这是迈向跨学科和跨学科合作研究战略的第一步。
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引用次数: 2
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Botanica Marina
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