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Activation of the SPARDA defense system by filament assembly using a beta-relay signaling mechanism widespread in prokaryotic Argonautes 原核动物中广泛存在的β -中继信号机制通过丝组装激活SPARDA防御系统。
IF 25.9 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-11-27 DOI: 10.1038/s41422-025-01198-1
Edvinas Jurgelaitis, Evelina Zagorskaitė, Aurimas Kopūstas, Simonas Asmontas, Elena Manakova, Indrė Dalgėdienė, Ugnė Tylenytė, Arunas Silanskas, Paulius Toliusis, Algirdas Grybauskas, Marijonas Tutkus, Česlovas Venclovas, Mindaugas Zaremba
Present in all three domains of life, Argonaute proteins use short oligonucleotides as guides to recognize complementary nucleic acid targets. In eukaryotes, Argonautes are involved in RNA silencing, whereas in prokaryotes, they function in host defense against invading DNA. Here, we show that SPARDA (short prokaryotic Argonaute, DNase associated) systems from Xanthobacter autotrophicus (Xau) and Enhydrobacter aerosaccus (Eae) function in anti-plasmid defense. Upon activation, SPARDA nonspecifically degrades both invader and genomic DNA, causing host death, thereby preventing further spread of the invader in the population. X-ray structures of the apo Xau and EaeSPARDA complexes show that they are dimers, unlike other apo short pAgo systems, which are monomers. We show that dimerization in the apo state is essential for inhibition of XauSPARDA activity. We demonstrate by cryo-EM that activated XauSPARDA forms a filament. Upon activation, the recognition signal of the bound guide/target duplex is relayed to other functional XauSPARDA sites through a structural region that we termed the “beta-relay”. Owing to dramatic conformational changes associated with guide/target binding, XauSPARDA undergoes a “dimer–monomer–filament” transition as the apo dimer dissociates into the guide/target-loaded monomers that subsequently assemble into the filament. Within the activated filament, the DREN nuclease domains form tetramers that are poised to cleave dsDNA. We show that other SPARDAs also form filaments during activation. Furthermore, we identify the presence of the beta-relay in pAgo from all clades, providing new insights into the structural mechanisms of pAgo proteins. Taken together, these findings reveal the detailed structural mechanism of SPARDA and highlight the importance of the beta-relay mechanism in signal transduction in Argonautes.
存在于生命的所有三个领域,Argonaute蛋白使用短寡核苷酸作为向导来识别互补的核酸靶标。在真核生物中,Argonautes参与RNA沉默,而在原核生物中,它们在宿主防御入侵的DNA中起作用。在这里,我们发现来自自养黄杆菌(Xau)和空泡Enhydrobacter aerosaccus (Eae)的SPARDA(短原核Argonaute, dna酶相关)系统在抗质粒防御中起作用。激活后,SPARDA非特异性降解入侵者和基因组DNA,导致宿主死亡,从而阻止入侵者在种群中的进一步传播。载子Xau和EaeSPARDA配合物的x射线结构表明它们是二聚体,而不像其他载子短pAgo体系是单体。我们发现载脂蛋白状态下的二聚化对于抑制XauSPARDA活性是必不可少的。我们通过低温电镜证明,激活XauSPARDA形成细丝。激活后,结合的向导/靶标双链的识别信号通过我们称为“β -中继”的结构区域传递到其他功能性XauSPARDA位点。由于与向导/靶结合相关的显著构象变化,XauSPARDA经历了“二聚体-单体-丝”的转变,载脂蛋白二聚体解离成向导/靶负载单体,随后组装成丝。在活化的丝内,DREN核酸酶结构域形成四聚体,准备裂解dsDNA。我们发现其他的SPARDAs在激活过程中也会形成细丝。此外,我们在所有进化枝的pAgo中发现了β -中继的存在,为pAgo蛋白的结构机制提供了新的见解。综上所述,这些发现揭示了SPARDA的详细结构机制,并强调了β -relay机制在Argonautes信号转导中的重要性。
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引用次数: 0
Glucose starvation mimetic aldometanib removes immune barriers permitting mice with hepatocellular carcinoma to live to normal ages 葡萄糖饥饿模拟aldometanib消除免疫屏障,使肝细胞癌小鼠活到正常年龄。
IF 25.9 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-11-25 DOI: 10.1038/s41422-025-01195-4
Hui-Hui Hu, Xuefeng Wang, Bin Lan, Haili Cheng, Hong Wen, Fangfang Chen, Jianfeng Wu, Mengqi Li, Jiazhou Chen, Jinhui Zhang, Dongxu Chen, Shiyu Lin, Jieyu Lin, Mingyang Yang, Zhenhua Wu, Zhong-Zheng Zheng, Fuqing Chen, Jianyin Zhou, Gang Chen, Yu Chen, Xianming Deng, Chen-Song Zhang, Jingfeng Liu, Sheng-Cai Lin
Dysregulated metabolism in tumor tissues and para-tumor tissues alike can lead to immunosuppression, which may underlie cancer development. However, metabolic intervention as a therapeutic strategy has been of no avail. In this study, we explored the anti-cancer therapeutic effect of aldometanib, which specifically targets lysosome-associated aldolase to mimic glucose starvation and thereby activates lysosomal AMP-activated protein kinase (AMPK), a master regulator of metabolic homeostasis. We show that aldometanib inhibits the growth of hepatocellular carcinoma (HCC) in an AMPK-dependent manner, allowing hepatoma-bearing mice to survive to mature ages, although aldometanib does not possess cytotoxicity toward HCC or normal cells. Intriguingly, aldometanib exerts anti-cancer effects only in immune-competent host mice, but not in immune-defective mice. We also found that HCC tissues in aldometanib-treated mice were massively infiltrated with CD8+ T cells, which was not seen in mice with liver-specific knockout of AMPKα. Our findings thus suggest that the metabolic regulator AMPK rebalances the tumor microenvironment to allow cytotoxic immune cells inside the body to eliminate cancer cells and effectively contain the tumor tissues. The finding that metabolic intervention can make cancer a lifelong manageable disease may usher in a new era of cancer therapy.
肿瘤组织和肿瘤旁组织的代谢失调都可能导致免疫抑制,这可能是癌症发展的基础。然而,代谢干预作为一种治疗策略一直无效。在这项研究中,我们探索了aldometanib的抗癌治疗作用,它特异性地靶向溶酶体相关醛缩酶来模拟葡萄糖饥饿,从而激活溶酶体amp激活的蛋白激酶(AMPK),这是代谢稳态的主要调节剂。我们发现aldometanib以ampk依赖的方式抑制肝细胞癌(HCC)的生长,允许肝癌小鼠存活到成熟年龄,尽管aldometanib对HCC或正常细胞不具有细胞毒性。有趣的是,aldometanib仅在免疫正常的宿主小鼠中发挥抗癌作用,而在免疫缺陷的小鼠中不起作用。我们还发现,aldometanib治疗小鼠的HCC组织中大量浸润CD8+ T细胞,而在肝脏特异性敲除AMPKα的小鼠中未见这种情况。因此,我们的研究结果表明,代谢调节因子AMPK重新平衡肿瘤微环境,使体内的细胞毒性免疫细胞能够消除癌细胞并有效地遏制肿瘤组织。代谢干预可以使癌症成为一种终生可控的疾病,这一发现可能会开启癌症治疗的新时代。
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引用次数: 0
Sanofi-Cell Research outstanding paper award of 2024 2024年赛诺菲细胞研究优秀论文奖。
IF 25.9 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-11-20 DOI: 10.1038/s41422-025-01201-9
Cell Research Editorial Team
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引用次数: 0
Destruction of VISTA by TRIM25 ablation in T cells potentiates cancer immunotherapy T细胞中TRIM25消融对VISTA的破坏增强了癌症免疫治疗。
IF 25.9 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-11-13 DOI: 10.1038/s41422-025-01186-5
Yishuang Sun, Zijian Zhang, Haiou Li, Xia Bu, Li Chen, Xiyong Wang, Lifang Fan, Baoxiang Chen, Lijun Kong, Panpan Dai, Wenjing Song, Xiangling Xiao, Jie Shi, Bolin Xiang, Chuan He, Yingmeng Yao, Wenjun Xiong, Haisheng Yu, Congqing Jiang, Qun Qian, Hudan Liu, Sufang Tian, Guoliang Qing, Zhiyong Yang, Wenyi Wei, Gordon J. Freeman, Haichuan Zhu, Jinfang Zhang
The limited success of current immunotherapies emphasizes the need for new targets and combination treatments. V-domain Ig suppressor of T cell activation (VISTA) is a promising immune checkpoint target in cancer immunotherapy, but its regulatory mechanism is poorly understood. Through CRISPR knockout screening and proteomic analysis, we identify tripartite motif containing 25 (TRIM25) as a positive regulator for VISTA largely through antagonizing its degradation signaling. Moreover, ERK-mediated phosphorylation of VISTA at Thr284 enhances its interaction with TRIM25, leading to VISTA stabilization. A VISTA-derived phospho-peptide competitively disrupts TRIM25–VISTA interaction, thereby reducing VISTA expression and potentiating the anti-tumor efficacy of PD-1/PD-L1 blockade. Moreover, single-cell RNA sequencing analysis shows that tumor-infiltrating cytotoxic CD8+ T cells are increased in mice with T cell-specific knockout of Trim25. Of note, genetic ablation of Trim25 in T cells not only improves anti-PD-L1 immunotherapy, but also significantly ameliorates CAR T anti-tumor activity in various mouse tumor models. Collectively, this study unveils a mechanism for VISTA regulation in T cells and highlights targeting TRIM25–VISTA as a potential strategy to enhance tumor immunotherapy.
目前免疫疗法的有限成功强调需要新的靶点和联合治疗。V-domain Ig suppressor of T cell activation (VISTA)是肿瘤免疫治疗中一个很有前景的免疫检查点靶点,但其调控机制尚不清楚。通过CRISPR敲除筛选和蛋白质组学分析,我们确定tripartite motif containing 25 (TRIM25)主要通过拮抗其降解信号传导而成为VISTA的正调控因子。此外,erk介导的VISTA Thr284位点磷酸化增强了它与TRIM25的相互作用,导致VISTA稳定。VISTA衍生的磷酸化肽竞争性地破坏TRIM25-VISTA相互作用,从而降低VISTA表达并增强PD-1/PD-L1阻断的抗肿瘤功效。此外,单细胞RNA测序分析显示,在T细胞特异性敲除Trim25的小鼠中,肿瘤浸润性细胞毒性CD8+ T细胞增加。值得注意的是,基因消融T细胞中的Trim25不仅可以改善抗pd - l1免疫治疗,还可以显著改善各种小鼠肿瘤模型中的CAR - T抗肿瘤活性。总的来说,这项研究揭示了VISTA在T细胞中的调节机制,并强调靶向TRIM25-VISTA是增强肿瘤免疫治疗的潜在策略。
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引用次数: 0
ZBP1 links infections to cancer immunotherapy ZBP1将感染与癌症免疫治疗联系起来。
IF 25.9 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-11-13 DOI: 10.1038/s41422-025-01196-3
Lorenzo Galluzzi, Spencer Brackett, Neil Johnson
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引用次数: 0
Targeted destruction of VISTA boosts anti-tumor immunotherapy 靶向破坏VISTA促进抗肿瘤免疫治疗。
IF 25.9 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-11-13 DOI: 10.1038/s41422-025-01194-5
Li Chen, Xia Bu, Yishuang Sun, Daoyuan Huang, Yong Chen, Tao Hou, Xiaoping Hu, Jingchao Wang, Peiqiang Yan, Yihang Qi, Weiwei Jiang, Yan Xiong, Jing Liu, Yang Gao, Mengxi Huan, Bin Wang, Qianjia Liu, Xiaoming Dai, Fabin Dang, John M. Asara, Masanori Fujimoto, Hiroyuki Inuzuka, Jian Jin, Jinfang Zhang, Gordon J. Freeman, Wenyi Wei
Immune checkpoints serve as regulatory pathways that are essential for regulating immune response and homeostasis. As such, many components along the pathway have emerged as pivotal targets in cancer therapy. To overcome the treatment resistance and limited efficacy encountered by current immune checkpoint therapies, there is an urgent need for new immunotherapeutic targets and strategies. V-domain Ig suppressor of T cell activation (VISTA) is an immune checkpoint protein with a unique expression pattern and has emerged as a novel therapeutic target in anti-tumor immunotherapy; however, the precise role of VISTA and its regulatory mechanisms in tumor cells remain incompletely understood. Here, we identify a novel strategy targeting VISTA for cancer immunotherapy, enhancing therapeutic outcomes. Mechanistically, we show that VISTA undergoes anaphase-promoting complex/cyclosome (APC/C)/CDH1-mediated ubiquitination and subsequent proteasomal degradation, a process that can be reversed by the deubiquitinase USP2. Therapeutically, the USP2 inhibitor MS102 significantly reduces VISTA protein abundance in vitro and in vivo, enhances T cell responses, and synergizes with anti-PD-1 immunotherapy to improve survival in syngeneic mouse tumor models. Our findings reveal a regulatory network for VISTA stability control and support the combination of USP2 inhibitors with anti-PD-1 immunotherapy to enhance anti-tumor immune responses.
免疫检查点是调节免疫反应和体内平衡的重要途径。因此,该通路上的许多成分已成为癌症治疗的关键靶点。为了克服目前免疫检查点疗法所遇到的治疗耐药性和有限的疗效,迫切需要新的免疫治疗靶点和策略。V-domain Ig suppressor of T cell activation (VISTA)是一种具有独特表达模式的免疫检查点蛋白,已成为抗肿瘤免疫治疗的新靶点;然而,VISTA在肿瘤细胞中的确切作用及其调控机制尚不完全清楚。在这里,我们确定了一种针对VISTA的癌症免疫治疗新策略,提高了治疗效果。在机制上,我们发现VISTA经历了后期促进复合物/环体(APC/C)/ cdh1介导的泛素化和随后的蛋白酶体降解,这一过程可以通过去泛素酶USP2逆转。在治疗上,USP2抑制剂MS102在体外和体内显著降低VISTA蛋白丰度,增强T细胞反应,并与抗pd -1免疫疗法协同作用,提高同基因小鼠肿瘤模型的生存率。我们的研究结果揭示了VISTA稳定性控制的调控网络,并支持USP2抑制剂与抗pd -1免疫疗法联合使用以增强抗肿瘤免疫应答。
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引用次数: 0
The molecular basis of μ-opioid receptor signaling plasticity μ-阿片受体信号传导可塑性的分子基础。
IF 25.9 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-11-07 DOI: 10.1038/s41422-025-01191-8
Huibing Zhang, Xueting Wang, Kun Xi, Qingya Shen, Jianheng Xue, Yanqing Zhu, Shao-Kun Zang, Tianqiang Yu, Dan-Dan Shen, Jia Guo, Li-Nan Chen, Su-Yu Ji, Jiao Qin, Yingjun Dong, Mingming Zhao, Ming Yang, Haijing Wu, Guoli Yang, Yan Zhang
Activation of the μ-opioid receptor (μOR) alleviates pain but also elicits adverse effects through diverse G proteins and β-arrestins. The structural details of μOR complexes with Gz and β-arrestins have not been determined, impeding a comprehensive understanding of μOR signaling plasticity. Here, we present the cryo-EM structures of the μOR–Gz and μOR–βarr1 complexes, revealing selective conformational preferences of μOR when engaged with specific downstream signaling transducers. Integrated receptor pharmacology, including high-resolution structural analysis, cell signaling assays, and molecular dynamics simulations, demonstrated that transmembrane helix 1 (TM1) acts as an allosteric regulator of μOR signaling bias through differential stabilization of the Gi-, Gz-, and βarr1-bound states. Mechanistically, outward TM1 displacement confers structural flexibility that promotes G protein recruitment, whereas inward TM1 retraction facilitates βarr1 recruitment by stabilizing the intracellular binding pocket through coordinated interactions with TM2, TM7, and helix8. Structural comparisons between the Gi-, Gz-, and βarr1-bound complexes identified a TM1-fusion pocket with significant implications for downstream signaling regulation. Overall, we demonstrate that the conformational and thermodynamic heterogeneity of TM1 allosterically drives the downstream signaling specificity and plasticity of μOR, thereby expanding the understanding of μOR signal transduction mechanisms and providing new avenues for the rational design of analgesics.
μ-阿片受体(μOR)的激活可以减轻疼痛,但也会通过多种G蛋白和β-抑制素引起不良反应。μOR与Gz和β-阻滞蛋白配合物的结构细节尚未确定,这阻碍了对μOR信号传导可塑性的全面理解。在这里,我们展示了μOR- gz和μOR-βarr1配合物的低温电镜结构,揭示了μOR与特定下游信号转导器结合时的选择性构象偏好。综合受体药理学,包括高分辨率结构分析、细胞信号分析和分子动力学模拟,表明跨膜螺旋1 (TM1)通过Gi-、Gz-和βarr1结合状态的差异稳定,作为μOR信号偏态的变构调节剂。从机制上说,向外的TM1位移赋予了结构灵活性,促进了G蛋白的募集,而向内的TM1缩回通过与TM2、TM7和helix8的协调相互作用稳定了细胞内结合袋,从而促进了βarr1的募集。Gi-、Gz-和βarr1结合复合物的结构比较发现了一个tm1融合袋,对下游信号调节具有重要意义。总之,我们证明了TM1的构象和热力学异质性变构驱动μOR的下游信号特异性和可塑性,从而扩大了对μOR信号转导机制的理解,并为合理设计镇痛药提供了新的途径。
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引用次数: 0
Nearly complete redirection of insertion-type indel into recombination enhances knock-in and facilitates endogenous biomolecular condensate analysis 插入型indel几乎完全重定向到重组中,增强了敲入并促进了内源性生物分子凝聚分析。
IF 25.9 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-10-29 DOI: 10.1038/s41422-025-01190-9
Minglei Huang, Jingjing Fu, Peizhe Wang, Boyi Chen, Qichen Yuan, Jiawei Yu, Huimin Wang, Yiting Liu, Zhiyi Li, Yanling Wu, Tianlei Ying, Qingfeng Wu, Ming Zhu, Wei Qin, Yinqing Li
{"title":"Nearly complete redirection of insertion-type indel into recombination enhances knock-in and facilitates endogenous biomolecular condensate analysis","authors":"Minglei Huang, Jingjing Fu, Peizhe Wang, Boyi Chen, Qichen Yuan, Jiawei Yu, Huimin Wang, Yiting Liu, Zhiyi Li, Yanling Wu, Tianlei Ying, Qingfeng Wu, Ming Zhu, Wei Qin, Yinqing Li","doi":"10.1038/s41422-025-01190-9","DOIUrl":"10.1038/s41422-025-01190-9","url":null,"abstract":"","PeriodicalId":9926,"journal":{"name":"Cell Research","volume":"35 12","pages":"1079-1082"},"PeriodicalIF":25.9,"publicationDate":"2025-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145380880","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
KCNQ1 and PIP2: it takes two to tango KCNQ1和PIP2:一个巴掌拍不响。
IF 25.9 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-10-23 DOI: 10.1038/s41422-025-01189-2
Alicia De La Cruz, H. Peter Larsson
{"title":"KCNQ1 and PIP2: it takes two to tango","authors":"Alicia De La Cruz, H. Peter Larsson","doi":"10.1038/s41422-025-01189-2","DOIUrl":"10.1038/s41422-025-01189-2","url":null,"abstract":"","PeriodicalId":9926,"journal":{"name":"Cell Research","volume":"35 12","pages":"922-923"},"PeriodicalIF":25.9,"publicationDate":"2025-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.nature.comhttps://www.nature.com/articles/s41422-025-01189-2.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145351546","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Intestinal GAPs: neuro–epithelial–immune modules for liver protection 肠间隙:用于肝脏保护的神经上皮免疫模块。
IF 25.9 1区 生物学 Q1 CELL BIOLOGY Pub Date : 2025-10-16 DOI: 10.1038/s41422-025-01188-3
Manuel O. Jakob, Andreas Diefenbach
{"title":"Intestinal GAPs: neuro–epithelial–immune modules for liver protection","authors":"Manuel O. Jakob, Andreas Diefenbach","doi":"10.1038/s41422-025-01188-3","DOIUrl":"10.1038/s41422-025-01188-3","url":null,"abstract":"","PeriodicalId":9926,"journal":{"name":"Cell Research","volume":"36 3","pages":"179-180"},"PeriodicalIF":25.9,"publicationDate":"2025-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.nature.comhttps://www.nature.com/articles/s41422-025-01188-3.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145305470","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Cell Research
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