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Immobilized consortium of heterotrophic nitrifying-aerobic denitrifying bacteria on various matrices for nitrogen removal from synthetic wastewater 在各种基质上固定化异养硝化-好氧反硝化菌群,以去除合成废水中的氮
IF 4.1 2区 环境科学与生态学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-20 DOI: 10.1016/j.ibiod.2024.105888
Noushan Hatami, Zahra Etemadifar, Rasoul Shafiei

Environmental contamination by nitrogen compounds such as ammonium and nitrate has increased extensively in the recent past, which necessitates the development of eco-friendly remediation technologies. In this study, three matrix types including pumice, aquarium ceramic filter, and calcium alginate beads were used to facilitate nitrogen removal with an immobilized heterotrophic nitrifying-aerobic denitrifying (HNAD) bacterial consortium. The HNAD bacterial consortium was made of Pseudomonas monteilii Nht, Pseudomonas mendocina AquaN, Rhodococcus erythropolis R1, and Acinetobacter calcoaceticus SCC2. The quality parameters for immobilization, such as the number of immobilized cells and their viability, were assessed. The highest number of bacterial cells (3.4 × 10 9) was immobilized on the aquarium ceramic filter, with 53% cell viability at 30°Ⅽ for two months. Pumice, aquarium ceramic filter, and calcium alginate achieved NH4+-N removal efficiencies of 85.3 ± 1.7%, 87.3 ± 2.2%, and 77.5 ± 3.99% within 24 h, respectively, and removed NO3-N by 88.23 ± 0.36%, 93.95 ± 0.00%, and 71.29 ± 6.49% over 60 h. Additionally, immobilized cells on pumice and ceramic filter retained up to 84% of NH4+-N removal efficiency after 14 reuse cycles. These findings indicate that the immobilized HNAD bacterial consortium on the aquarium ceramic filter can be used as a suitable biofilter for treatment of high nitrogen wastewater.

近年来,铵和硝酸盐等氮化合物对环境的污染日益严重,因此有必要开发生态友好型修复技术。本研究利用浮石、水族馆陶瓷过滤器和海藻酸钙珠等三种基质类型,通过固定化异养硝化-好氧反硝化(HNAD)细菌群促进脱氮。HNAD 复合菌群由假单胞菌 Monteilii Nht、假单胞菌 mendocina AquaN、红球菌 Rhodococcus erythropolis R1 和醋酸钙化杆菌 Acinetobacter calcoaceticus SCC2 组成。评估了固定化的质量参数,如固定化细胞的数量和活力。固定在水族陶瓷过滤器上的细菌细胞数量最多(3.4 × 10 9),在 30°Ⅽ 条件下两个月的细胞存活率为 53%。浮石、水族陶瓷过滤器和海藻酸钙在 24 小时内对 NH4+-N 的去除率分别为 85.3 ± 1.7%、87.3 ± 2.2% 和 77.5 ± 3.99%,60 小时内对 NO3-N 的去除率分别为 88.23 ± 0.36%、93.95 ± 0.00% 和 71.29 ± 6.49%。这些研究结果表明,水族馆陶瓷过滤器上的固定化 HNAD 细菌群可用作处理高氮废水的合适生物滤池。
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引用次数: 0
Bio-based plastics, biodegradable plastics, and compostable plastics: biodegradation mechanism, biodegradability standards and environmental stratagem 生物基塑料、生物降解塑料和可堆肥塑料:生物降解机理、生物降解性标准和环境策略
IF 4.1 2区 环境科学与生态学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-20 DOI: 10.1016/j.ibiod.2024.105887
Sabzoi Nizamuddin , Abdul Jabbar Baloch , Chengrong Chen , Muhammad Arif , Nabisab Mujawar Mubarak

Conventional polymers are environmentally damaging materials; therefore, global efforts are being made to gradually replace these conventional polymers with bio-based, biodegradable, and compostable plastics due to claims of being more sustainable than petroleum-based plastics. However, such claims may not be based on reality, and unregulated bio plastics may cause environmental anarchy similar to conventional plastics. The degradation of bioplastics has received significant attention because it is the parameter used to evaluate their end-of-life disposal and to assess their environmental shortcomings - where the bioplastics which degrade completely in different environments, thus, considered as an environmental-friendly polymers. Upon disposal, the bioplastics decompose in a bio-active medium by microorganisms such as algae, bacteria, and fungi or to humus, water, and CO2 by marine water. Different standardization and certification bodies have set the standards for bioplastics, compostable, and biodegradable plastics to evaluate the environmental constraints of bioplastics. These standards support various industries in creating bioplastics. Thus, it is important to harness the regulatory power to bring all the standardization and certification bodies (both at the national and international levels) together in setting standards with a high threshold to classify bio-based plastics, biodegradable plastics, and compostable plastics.

传统聚合物是破坏环境的材料;因此,全球正在努力用生物基、可生物降解和可堆肥塑料逐步取代这些传统聚合物,因为生物基、可生物降解和可堆肥塑料声称比石油基塑料更具可持续性。然而,这种说法可能并不符合实际情况,不受监管的生物塑料可能会造成与传统塑料类似的环境无政府状态。生物塑料的降解问题备受关注,因为这是评估其报废处理和环境缺陷的参数--生物塑料在不同环境中会完全降解,因此被视为环境友好型聚合物。废弃时,生物塑料在生物活性介质中被藻类、细菌和真菌等微生物分解,或被海水分解为腐殖质、水和二氧化碳。不同的标准化和认证机构已经制定了生物塑料、可堆肥塑料和生物降解塑料的标准,以评估生物塑料的环境限制。这些标准为各行各业创造生物塑料提供了支持。因此,重要的是要利用监管力量,将所有标准化和认证机构(包括国家和国际层面的机构)联合起来,制定高门槛的标准,对生物基塑料、可生物降解塑料和可堆肥塑料进行分类。
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引用次数: 0
Study on the deterioration of mortar by enteromorpha-diatoms during green tide 绿潮期间肠藻硅藻对灰泥的劣化研究
IF 4.1 2区 环境科学与生态学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-20 DOI: 10.1016/j.ibiod.2024.105885
Xiaojie Chen , Hui Rong , Dee Liu , Yang Feng , Zhihua Liu , Yong Yang

Similar to the deterioration of construction materials by airborne algae, hydrophytic algae can deteriorate cementitious materials and change the performance of structures, thereby reducing the safety and economics of marine facilities. Frequent outbreaks of green tides have occurred in recent years, and algae have been shown to deteriorate calcium substances in cementitious materials. Therefore, the pattern of deterioration of cement by algae as a result of green tide outbreaks is important for extending the durability of marine installations. For this reason, the dominant species of the green tide outbreak, Enteromorpha, and the marine primary producer, diatoms, were selected to simulate the green tide outbreak in this paper. Then, in the paper, the colonization law of Enteromorpha and diatom and the calcium loss law in mortar are discussed. Results showed four stages of Enteromorpha-diatoms colonization on the mortar surface (diatoms colonization within 15 days, release of spores from Enteromorpha, germination of spores from Enteromorpha within 60 days, and transformation of the relationship between the colonization of Enteromorpha and diatoms). Three channels for the loss of calcium on the surface of the mortar include the uptake and transformation, the complexation of biofilm, and the dissolution and deposition. Additionally, Enteromorpha-diatoms can deteriorate the mortar surface, mineral composition, and microstructure.

与空气中的藻类对建筑材料的恶化作用类似,水生藻类也会恶化胶凝材料,改变结构的性能,从而降低海洋设施的安全性和经济性。近年来,绿潮频繁爆发,藻类已被证明会使水泥基材料中的钙物质变质。因此,绿潮爆发导致的藻类对水泥的劣化模式对于延长海洋设施的耐久性非常重要。因此,本文选择了绿潮爆发的主要物种肠藻和海洋初级生产者硅藻来模拟绿潮爆发。然后,本文讨论了肠藻和硅藻的定殖规律以及砂浆中的钙流失规律。结果表明,砂浆表面的肠藻-硅藻定殖分为四个阶段(15 天内硅藻定殖、肠藻释放孢子、60 天内肠藻孢子发芽、肠藻与硅藻定殖关系的转变)。灰泥表面钙流失的三个途径包括吸收和转化、生物膜的复合以及溶解和沉积。此外,肠藻-硅藻会破坏砂浆表面、矿物成分和微观结构。
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引用次数: 0
Novel lactobacillus consortium for effective zearalenone adsorption and biodegradation 有效吸附和生物降解玉米赤霉烯酮的新型乳酸菌群
IF 4.1 2区 环境科学与生态学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-19 DOI: 10.1016/j.ibiod.2024.105889
Bilal Murtaza , Lili Wang , Xiaoyu Li , Ashiq Ali , Shahbaz Ul Haq , Li Ji-bin , Yongping Xu

The Lactobacillus consortium LBC-4 was evaluated for its ability to mitigate zearalenone (ZEN) contamination, addressing a critical food and health security issue. This study highlights the potential of LBC-4 in mycotoxin detoxification through comprehensive morphological and genotypic analyses. The LBC-4 consortium, confirmed by PCR to encompass various Lactobacillus strains, efficiently adsorbed 88.7% and 89% of ZEN within 1 and 24 h at 37 °C, respectively, demonstrating a dynamic relationship between bacterial growth and mycotoxin sequestration. Optimal ZEN removal was achieved at 37 °C and pH 7.0 to 8.0. The mechanisms of ZEN removal were elucidated, revealing the roles of cell wall, viable cells, and culture supernatants. Heat-treated LBC-4 showed enhanced ZEN adsorption, supported by Scanning Electron Microscopy and Fourier Transform Infrared Analysis, which indicated significant structural changes. Additionally, LBC-4 degraded ZEN into less toxic derivatives, including 6, 8, 10-trihydroxy zearalenol-14-sulfate, 6, 8, 10-trihydroxy zearalenol, 6, 8-dihydroxy zearalenol, and 6, 8, 10-trihydroxy zearalenol, underscoring the consortium's multifaceted mechanisms and its potential for effective microbial ZEN removal.

该研究评估了 LBC-4 乳酸菌群减轻玉米赤霉烯酮(ZEN)污染的能力,以解决关键的食品和健康安全问题。这项研究通过全面的形态学和基因型分析,强调了 LBC-4 在霉菌毒素解毒方面的潜力。经 PCR 证实,LBC-4 菌群包括多种乳酸杆菌菌株,在 37 °C、1 小时和 24 小时内分别有效吸附了 88.7% 和 89% 的 ZEN,证明了细菌生长与霉菌毒素吸附之间的动态关系。在 37 °C、pH 值为 7.0 至 8.0 的条件下,ZEN 的去除率达到最佳。对 ZEN 的去除机制进行了阐明,揭示了细胞壁、存活细胞和培养上清液的作用。扫描电子显微镜和傅立叶变换红外分析表明,经过热处理的 LBC-4 对 ZEN 的吸附能力增强,这表明其结构发生了显著变化。此外,LBC-4 还能将玉米赤霉烯醇降解为毒性较低的衍生物,包括 6、8、10-三羟基玉米赤霉烯醇-14-硫酸盐、6、8、10-三羟基玉米赤霉烯醇、6、8-二羟基玉米赤霉烯醇和 6、8、10-三羟基玉米赤霉烯醇。
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引用次数: 0
Electric field effect of microbial fuel cells on biological reactions: A review 微生物燃料电池对生物反应的电场效应:综述
IF 4.1 2区 环境科学与生态学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-19 DOI: 10.1016/j.ibiod.2024.105886
Shan Huang , Jingran Zhang , Huimin Zhang , Chuqiao Wang , Chenglong Zou , Yiran Zhang , Guangcan Zhu

Many studies have used microbial fuel cell (MFC) to enhance biological reactions to improve the removal of pollutants, but the mechanisms of enhancement are unclear. The fundamental difference between biological reactions in MFC and traditional biological reactions lies in the presence of the electric field. This review analyzes the current research status of the mechanism of electron transfer by electro-active bacteria (EABs) in MFC system and the modulation effect of electric field on microorganisms, and summarizes the research progress on the enhancement mechanisms of nitrogen removal by MFC with a focus on biocathode denitrification. In addition, constructive suggestions on how to further clarifying the enhancement mechanism of MFC on biological responses have been also put forward. This review provides the theoretical basis for further investigation of the mechanisms of enhancement of other biological reactions by MFC.

许多研究利用微生物燃料电池(MFC)来增强生物反应,以提高污染物的去除率,但增强机制尚不清楚。MFC 中的生物反应与传统生物反应的根本区别在于电场的存在。本综述分析了电活性细菌(EABs)在 MFC 系统中的电子传递机理和电场对微生物的调控作用的研究现状,总结了 MFC 脱氮强化机理的研究进展,重点介绍了生物阴极脱氮。此外,还就如何进一步阐明 MFC 对生物反应的增强机制提出了建设性建议。本综述为进一步研究 MFC 对其他生物反应的增强机制提供了理论依据。
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引用次数: 0
Conservation of stone heritage buildings: Exploring the algicidal properties of biologically-synthesized nano-silver 保护石质文物建筑:探索生物合成纳米银的杀藻特性
IF 4.1 2区 环境科学与生态学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-17 DOI: 10.1016/j.ibiod.2024.105878
Mingzhong Long , Zhiyi Xu , Yingqiu Chen , Kehua Wu , Shengyu Yang

The degradation of stone heritage buildings by pioneer plants such as algae is a major challenge in heritage conservation research worldwide. At present, there is a lack of effective algaecides to inhibit the growth of algae on stone structures, prompting an urgent need to explore effective green methods to remove algae colonizing on surfaces of stone heritage buildings. Therefore, we explored the use of aqueous and alcoholic extracts of four plant leaves (Cinnamomum cassia leaf, Syzygium aromaticum leaf, Thymus mongolicus leaf and Pogostemon cablin leaf) to prepare silver nanoparticles. By optimizing the synthetic parameters, we optimized the yield of the nanoparticles and examined their algicidal activities through in-vitro and in-situ experiments. The experimental results showed that the chlorophyll-a concentrations of algae treated with nano-silver synthesized from the alcoholic extract of Cinnamomum cassia leaf decreased approximately threefold, and the algae removal rate reached 71.34%. Meanwhile, nano-silver treatment made the color of the stone chips colonized with algae close to the color of the uncolonized algae, which demonstrated that the nano-silver can effectively remove the algae colonized on the stone chips. This study confirms that nano-silver synthesized from plant leaves offer a viable strategy as a ‘green’ algaecide for stone heritage buildings.

藻类等先驱植物对石质文物建筑的侵蚀是全球文物保护研究的一大挑战。目前,缺乏有效的灭藻剂来抑制藻类在石质结构上的生长,因此迫切需要探索有效的绿色方法来清除石质文物建筑表面的藻类。因此,我们探索了利用四种植物叶片(肉桂叶、香叶、百里香叶和白头翁叶)的水提取物和酒精提取物制备银纳米粒子。通过优化合成参数,我们优化了纳米粒子的产量,并通过体外和原位实验检验了其杀藻活性。实验结果表明,用肉桂叶醇提取物合成的纳米银处理藻类后,其叶绿素-a浓度下降了约三倍,除藻率达到 71.34%。同时,经纳米银处理后,有藻类定殖的石片颜色接近未定殖藻类的颜色,这表明纳米银能有效去除石片上的藻类定殖。这项研究证实,由植物叶片合成的纳米银作为石质文物建筑的 "绿色 "除藻剂是一种可行的策略。
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引用次数: 0
Versatile applications and mechanisms of genus Exiguobacterium in bioremediating heavy metals and organic pollutants: A review Exiguobacterium 属在重金属和有机污染物生物修复中的广泛应用和机制:综述
IF 4.1 2区 环境科学与生态学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-17 DOI: 10.1016/j.ibiod.2024.105884
Min Xiao, Zhong-er Long, Xueqin Fu, Long Zou

Microbial remediation presents a promising and sustainable approach for combating environmental pollutants. The genus Exiguobacterium thrives in diverse habitats, including extreme environments, and effectively mitigates a wide array of pollutants through its versatile detoxification mechanisms. Notably, these bacteria are adept at removing heavy metals such as chromium, arsenic, cadmium, mercury, lead, nickel, and vanadium from both soil and water, thereby reducing their toxicity and bioavailability. Additionally, Exiguobacterium demonstrates significant capabilities in biodegrading various organic pollutants, including synthetic dyes, nitroaromatic compounds, petroleum hydrocarbons, and plastic polymers. Despite its ecological and environmental importance, article dedicated to this genus remains relatively sparse. This review aims to comprehensively summarize the application and mechanism of genus Exiguobacterium in remediating toxic heavy metals and organic pollutants. It begins with a brief description of the genus's taxonomic characteristics and ecological diversity, followed by a detailed examination of its detoxification and biodegradation mechanisms in response to pollutant stress. Furthermore, it proposes avenues for future research, including the discovery of novel functional strains, elucidation of detoxification and degradation pathways, and development of genetic editing tools to enhance practical applications in environmental remediation.

微生物修复是应对环境污染物的一种前景广阔的可持续方法。Exiguobacterium 属在包括极端环境在内的各种栖息地中茁壮成长,并通过其多功能的解毒机制有效地减轻了各种污染物的影响。值得注意的是,这些细菌善于从土壤和水中清除铬、砷、镉、汞、铅、镍和钒等重金属,从而降低它们的毒性和生物利用率。此外,Exiguobacterium 在生物降解各种有机污染物(包括合成染料、硝基芳香族化合物、石油碳氢化合物和塑料聚合物)方面也表现出显著的能力。尽管该属具有重要的生态和环境意义,但专门研究该属的文章仍然相对较少。本综述旨在全面总结外杆菌属在修复有毒重金属和有机污染物方面的应用和机理。文章首先简要介绍了该菌属的分类学特征和生态多样性,然后详细研究了该菌属在应对污染物压力时的解毒和生物降解机制。此外,它还提出了未来的研究方向,包括发现新型功能菌株、阐明解毒和降解途径以及开发基因编辑工具,以提高在环境修复中的实际应用。
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引用次数: 0
Influence of Chinese herbal plants on greenhouse gas emissions from pig manure composting and fermentation 中草药植物对猪粪堆肥发酵过程中温室气体排放的影响
IF 4.1 2区 环境科学与生态学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-17 DOI: 10.1016/j.ibiod.2024.105882
Ya-jun Duan , Hong-sheng Wu , Guang-yao Chen , Feng-yi Hu , Yan-hui Li , Zhen-wei Li , Jin-he Chi , Dong-ming Lu , Xiao-ming Gu , Ming-chun Di

To reduce greenhouse gas emissions during the composting of animal manure and promote the resource utilization of Chinese herbal plants, experiments on pig manure composting were conducted in a plastic greenhouse. A mixture of herbal powders (Radix isatidis and Radix Polygoni Multiflori, mixed in a 1:1 ratio) was added to the pig manure at concentrations of 0.05%, 0.1%, and 0.5% (w/w), respectively. The results showed that the emission peaks of greenhouse gases occurred in the early stages of composting. The addition of 0.5% of a mixture of Chinese herbal plant powders resulted in a significant reduction in cumulative emissions of CO2 (45.0%) and N2O (60.0%) compared to the control. This treatment also resulted in the lowest global warming potential, measured at 91.3 g kg−1, and significantly increased the germination index. The study concluded that adding 0.5% Chinese herbal plant powder to compost effectively mitigated greenhouse gas emissions during the composting process.

为了减少动物粪便堆肥过程中的温室气体排放,促进中草药植物的资源化利用,我们在塑料大棚内进行了猪粪堆肥实验。在猪粪中分别添加 0.05%、0.1% 和 0.5%(重量比)的中草药粉末混合物(异麦冬和何首乌,以 1:1 的比例混合)。结果表明,温室气体的排放峰值出现在堆肥的早期阶段。与对照组相比,添加 0.5% 的中草药植物粉混合物可显著减少 CO2(45.0%)和 N2O(60.0%)的累积排放量。这种处理方法的全球升温潜能值也最低,为 91.3 g kg-1,并显著提高了发芽指数。研究得出结论,在堆肥中添加 0.5% 的中草药植物粉能有效减少堆肥过程中的温室气体排放。
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引用次数: 0
Solidago canadensis enhances its invasion by modulating prokaryotic communities in the bulk soil 加拿大实心草通过调节大块土壤中的原核生物群落增强入侵能力
IF 4.1 2区 环境科学与生态学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-13 DOI: 10.1016/j.ibiod.2024.105881
Wen-Tao Qiao , Yong-Feng Wang , Xue-Yan Hou , Dao-Lin Du , Ze-Yu Li , Xin-Yu Wang

Several explanations have been proposed for the rapid spread of Solidago canadensis in various environments. Yet, the specific role of soil prokaryotes in this process remains unclear. To understand the prokaryotic role, we conducted a field study in eastern China, where S. canadensis invaded the native plant Humulus scandens. Prokaryotic communities in the soil were studied across three levels of invasion intensity: low, medium, and high (S. canadensis less than 10, about 50, and above 90%, respectively). We found that the S. canadensis invasion decreased the total prokaryotic abundance in the bulk soil (1.61 ± 0.57 × 108 to 5.78 ± 3.65 × 107 copies g−1 DW), but increased the total prokaryotic abundance in S. canadensis (7.72 ± 5.11 × 107 to 1.27 ± 0.71 × 108 copies g−1 DW) and H. scandens rhizosphere (1.11 ± 0.28 × 108 to 1.79 ± 0.68 × 108 copies g−1 DW). S. canadensis invasion enhanced nutrient-releasing microorganisms (Actinobacteria) (p < 0.05) and disease-resistant microorganisms (Nocardioides) (p < 0.05), while decreasing N-cycling microorganisms (Thaumarchaeota and Nitrospirae) (p < 0.05). This study suggests that S. canadensis may enhance its invasion by modulating the species and relative abundance of functional microorganisms in the bulk soil.

对于实心草在各种环境中的快速传播,已经提出了几种解释。然而,土壤原核生物在这一过程中的具体作用仍不清楚。为了了解原核生物的作用,我们在中国东部进行了一项实地研究,在那里,S. canadensis 入侵了本地植物 Humulus scandens。我们对土壤中的原核生物群落进行了研究,包括三个入侵强度级别:低、中、高(S. canadensis入侵强度分别为低于10%、约50%和高于90%)。我们发现,S. canadensis 的入侵降低了大块土壤中原核生物的总丰度(1.61 ± 0.57 × 108 到 5.78 ± 3.65 × 107 拷贝 g-1 DW),但增加了 S. canadensis 中原核生物的总丰度(7.72 ± 3.65 × 107 拷贝 g-1 DW)。canadensis (7.72 ± 5.11 × 107 to 1.27 ± 0.71 × 108 copies g-1 DW) 和 H. scandens rhizosphere (1.11 ± 0.28 × 108 to 1.79 ± 0.68 × 108 copies g-1 DW) 中的原核生物总丰度。S. canadensis 的入侵增强了营养释放微生物(放线菌)(p < 0.05)和抗病微生物(Nocardioides)(p < 0.05),同时减少了氮循环微生物(Thaumarchaeota 和 Nitrospirae)(p < 0.05)。这项研究表明,卡纳金莎草可能会通过调节大体积土壤中功能微生物的种类和相对丰度来增强其入侵能力。
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引用次数: 0
The degradation of marine abundant compatible solute dimethylsulfoniopropionate was controlled by TetR-family transcriptional regulator DdaR in Alcaligenes faecalis TetR家族转录调节因子DdaR控制粪钙铝酸盐降解海洋丰富的相容性溶质二甲基磺酰基丙酸盐
IF 4.1 2区 环境科学与生态学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-08 DOI: 10.1016/j.ibiod.2024.105879
Siqiong Xu , Yongchuang Liu , Yujie Ouyang , Jialiang Li , Gongyi Song , Xiaohui Wang , Pan Yang , Yuehui Tang , Lili Li , Jian He , Jiguo Qiu , Cuiwei Chu , Keshi Ma

The copious compatible solute dimethylsulfoniopropionate (DMSP) plays significant roles in marine ecosystems. The DMSP degradation pathways in strain Alcaligenes faecalis M3A have been comprehensively studied, in which DMSP was cleaved into dimethyl sulphide (DMS) and acrylate. However, the transcriptional regulatory mechanism of DMSP degradation is not fully elucidated. In this study, the TetR/AcrR family transcriptional regulator DdaR repressing acuI operon in strain M3A was investigated. The transcription start sites and promoters of the acuI and ddaR operons was identified. DdaR bound to both the acuI and ddaR promoter regions in EMSA experiment. Two binding sites of DdaR shared conserved motif 5′-CNNCGTNACGNNG-3′ which was essential for the DdaR binding. DdaR was inhibited from binding to the acuI promoter region by acrylate, which acted as a ligand of DdaR. Site-directed mutagenesis was used to investigate the impact of four key amino acid residues (Y61, K67, E135, and I169) in DdaR, revealing their essential roles in the functioning of DdaR. The findings of this study unveil a negative transcriptional regulation mechanism of DMSP degradation in A. faecalis M3A by DdaR and provide a new understanding of the TetR/AcrR-type transcriptional regulators.

大量兼容溶质二甲基硫代丙酸酯(DMSP)在海洋生态系统中发挥着重要作用。在菌株 M3A 中,DMSP 被裂解为二甲基硫醚(DMS)和丙烯酸酯。然而,DMSP 降解的转录调控机制尚未完全阐明。本研究对菌株 M3A 中的 TetR/AcrR 家族转录调控因子 DdaR 抑制操作子进行了研究。确定了和操作子的转录起始位点和启动子。在 EMSA 实验中,DdaR 与 和 启动子区域都有结合。DdaR的两个结合位点共享保守基序5′-CNNCGTNACGNNG-3′,该基序对DdaR的结合至关重要。作为 DdaR 配体的丙烯酸酯抑制了 DdaR 与启动子区域的结合。研究人员利用定点突变技术研究了 DdaR 中四个关键氨基酸残基(Y61、K67、E135 和 I169)的影响,揭示了它们在 DdaR 功能中的重要作用。本研究的发现揭示了 DdaR 对 M3A 中 DMSP 降解的负转录调控机制,并对 TetR/AcrR 型转录调控因子有了新的认识。
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引用次数: 0
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International Biodeterioration & Biodegradation
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