首页 > 最新文献

Journal of breath research最新文献

英文 中文
Detection of structural pulmonary changes with real-time high-fidelity analysis of expiratory CO2. 实时高保真呼气CO2分析检测肺部结构性变化。
IF 3.4 4区 医学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-08-01 DOI: 10.1088/1752-7163/adf253
Teresa John, Gabor Kovacs, Philipp Douschan, Vasile Foris, Maximilian Gumpoldsberger, Nikolaus John, Katarina Zeder, Andreas Zirlik, Horst Olschewski, Michael Pienn

There is an unmet need for breath-based markers for pulmonary vascular disease (PVD). We developed a fully-automatic algorithm to analyze expiratory CO2flow from resting ventilation and evaluated the clinical associations of our readouts. We enrolled patients with chronic obstructive pulmonary disease (COPD), interstitial lung disease (ILD), pulmonary arterial hypertension (PAH) and healthy controls and evaluated fractionated volumes for dead space, mixed space (MSV) and alveolar space, their respective CO2volumes and ventilatory equivalents for CO2(EqCO2) and the maximum slope of the first derivative of the cumulative expiratory CO2volume over expired volume (MSV-slope) as primary readouts. Differences between groups were analyzed using non-parametric tests. Associations were analyzed by Spearman correlation. The discriminatory power was determined with receiver operating characteristic analysis. Eleven COPD (median (IQR) age 64 (63-69) years), 10 ILD (61 (54-77) years), 10 PAH (64 (61-73) years) and 21 healthy controls (56 (52-61) years) were investigated. Patients vs healthy controls showed increased MSV and mixed space CO2(221 (164-270) ml vs 144 (131-167) ml, and 3.9 (3.2-4.9) ml vs 3.0 (2.7-3.4) ml,p< 0.001 andp= 0.002) and EqCO2(38 (34-42) vs 30 (29-35),p< 0.001), and decreased MSV-slopes (0.16 (0.12-0.21) vs 0.27 (0.23-0.32) l CO2l-2,p< 0.001). Area under the curve (AUC) for MSV and MSV-slope for disease prediction was 0.81 (95% CI 0.69-0.93) and 0.84 (0.73-0.95), respectively. MSV and mixed space CO2were only strongly increased in COPD and ILD but not PAH, resulting in a significant difference between PAH and COPD&ILD (AUC 0.74 (95% CI: 0.56-0.92). MSV and MSV-slope were significantly correlated with DLCO (ρ=-0.69 andρ= 0.72, respectively; bothp< 0.001). Fully-automatic high-fidelity expiratory CO2flow analysis is technically feasible, easy and safe to perform, and may represent a novel approach to detect PVD with or without structural changes of the airways and lung parenchyma. Prospective studies with larger sample size are needed to validate these findings.

对肺血管疾病(PVD)呼吸标志物的需求尚未得到满足。我们开发了一种全自动算法来分析静息通气产生的呼气二氧化碳流量,并评估我们的读数的临床相关性。我们纳入了慢性阻塞性肺疾病(COPD)、间质性肺疾病(ILD)、肺动脉高压(PAH)患者和健康对照者,并评估了死亡空间、混合空间(MSV)和肺泡空间的分离体积,它们各自的CO2体积和CO2的通气当量(EqCO2),以及累计呼气CO2体积除以过期体积的一阶导数的最大斜率(MSV-slope)作为主要读数。采用非参数检验分析组间差异。用Spearman相关分析相关关系。采用受试者工作特征(ROC)分析确定差异程度。研究对象包括11名COPD患者(中位年龄64(63-69)岁)、10名ILD患者(61(54-77)岁)、10名PAH患者(64(61-73)岁)和21名健康对照者(56(52-61)岁)。患者与健康对照组相比,MSV和混合空间CO2增加(221 (164-270)mL vs. 144 (131-167) mL, 3.9 (3.2-4.9) mL vs. 3.0 (2.7-3.4) mL, p
{"title":"Detection of structural pulmonary changes with real-time high-fidelity analysis of expiratory CO<sub>2</sub>.","authors":"Teresa John, Gabor Kovacs, Philipp Douschan, Vasile Foris, Maximilian Gumpoldsberger, Nikolaus John, Katarina Zeder, Andreas Zirlik, Horst Olschewski, Michael Pienn","doi":"10.1088/1752-7163/adf253","DOIUrl":"10.1088/1752-7163/adf253","url":null,"abstract":"<p><p>There is an unmet need for breath-based markers for pulmonary vascular disease (PVD). We developed a fully-automatic algorithm to analyze expiratory CO<sub>2</sub>flow from resting ventilation and evaluated the clinical associations of our readouts. We enrolled patients with chronic obstructive pulmonary disease (COPD), interstitial lung disease (ILD), pulmonary arterial hypertension (PAH) and healthy controls and evaluated fractionated volumes for dead space, mixed space (MSV) and alveolar space, their respective CO<sub>2</sub>volumes and ventilatory equivalents for CO<sub>2</sub>(EqCO<sub>2</sub>) and the maximum slope of the first derivative of the cumulative expiratory CO<sub>2</sub>volume over expired volume (MSV-slope) as primary readouts. Differences between groups were analyzed using non-parametric tests. Associations were analyzed by Spearman correlation. The discriminatory power was determined with receiver operating characteristic analysis. Eleven COPD (median (IQR) age 64 (63-69) years), 10 ILD (61 (54-77) years), 10 PAH (64 (61-73) years) and 21 healthy controls (56 (52-61) years) were investigated. Patients vs healthy controls showed increased MSV and mixed space CO<sub>2</sub>(221 (164-270) ml vs 144 (131-167) ml, and 3.9 (3.2-4.9) ml vs 3.0 (2.7-3.4) ml,<i>p</i>< 0.001 and<i>p</i>= 0.002) and EqCO<sub>2</sub>(38 (34-42) vs 30 (29-35),<i>p</i>< 0.001), and decreased MSV-slopes (0.16 (0.12-0.21) vs 0.27 (0.23-0.32) l CO<sub>2</sub>l<sup>-2</sup>,<i>p</i>< 0.001). Area under the curve (AUC) for MSV and MSV-slope for disease prediction was 0.81 (95% CI 0.69-0.93) and 0.84 (0.73-0.95), respectively. MSV and mixed space CO<sub>2</sub>were only strongly increased in COPD and ILD but not PAH, resulting in a significant difference between PAH and COPD&ILD (AUC 0.74 (95% CI: 0.56-0.92). MSV and MSV-slope were significantly correlated with DLCO (<i>ρ</i>=-0.69 and<i>ρ</i>= 0.72, respectively; both<i>p</i>< 0.001). Fully-automatic high-fidelity expiratory CO<sub>2</sub>flow analysis is technically feasible, easy and safe to perform, and may represent a novel approach to detect PVD with or without structural changes of the airways and lung parenchyma. Prospective studies with larger sample size are needed to validate these findings.</p>","PeriodicalId":15306,"journal":{"name":"Journal of breath research","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144682658","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The effect of Chios mastic toothpaste on halitosis and oral hygiene in orthodontic patients: a randomized clinical trial. 希俄斯乳脂牙膏对正畸患者口臭及口腔卫生的影响:一项随机临床试验。
IF 3.4 4区 医学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-07-30 DOI: 10.1088/1752-7163/adf1bf
Antigoni Alexiou, Ioulia-Maria Mylonopoulou, Spyros Papageorgiou, William Papaioannou, Iosif Sifakakis

Chios mastic gum, derived from Pistacia lentiscus variation chia, has emerged as a significant natural remedy to improve oral health and mitigate halitosis. This study aimed to examine the effect of mastic toothpaste on halitosis, plaque, and gingival indices in adolescents undergoing orthodontic treatment with fixed appliances. This study was a double-blind, placebo-controlled, parallel-group, randomized clinical trial. Thirty-two patients were randomly divided into two groups: A) mastic-toothpaste group and B) placebo-toothpaste group. Participants in both groups used the assigned toothpaste three times daily for 14 d. The primary outcome was objective hydrogen sulfide (H2S) levels in breath, measured using a gas chromatograph. The secondary outcomes were dimethyl sulfide and methyl-mercaptan levels, as well as the Silness and Löe Gingival Index (GI) and the Modified Silness and Löe Plaque Index (PI-M). Assessments were conducted at baseline and after two weeks. Data were analyzed using the Mann-WhitneyUtest and Student'st-test. A statistically significant difference was found between interventions, in favor of the mastic group's H2S (p= 0.001). The H2S median levels decreased from 158 parts per billion (ppb) to 26 ppb. Neither treatment group experienced a different decline in the levels of the other two components. Statistically significant differences were observed in the periodontal parameters, favoring the mastic group. The GI index decreased from 1.8 to 1 [p< 0.001, 95% CI: -0.7, -0.4], whereas the PI-M index decreased from 1.2 to 0.8 [p< 0.001, (95% CI: -0.5, -0.2)]. Mastic toothpaste may be an alternative option to reduce halitosis in adolescents undergoing orthodontic treatment with fixed appliances. Regular use of this toothpaste may lead to a clinically meaningful reduction in plaque and gingival indices (ClinicalTrials.gov, NCT06766097).

希俄斯乳胶,源自黄连木变种奇亚,已成为一种重要的自然疗法,以改善口腔健康和减轻口臭。本研究旨在探讨乳脂牙膏对青少年正畸治疗中口臭、牙菌斑及牙龈指数的影响。本研究为双盲、安慰剂对照、平行组、随机临床试验。32例患者随机分为两组:A)乳香牙膏组和B)安慰剂牙膏组。两组参与者每天使用指定的牙膏三次,持续14天。主要结果是使用气相色谱仪测量呼吸中的客观硫化氢(H₂S)水平。次要结果是二甲基硫化物和甲基硫醇水平,以及清洁度和Löe牙龈指数(GI)和改良清洁度和Löe斑块指数(PI-M)。在基线和两周后进行评估。数据分析采用Mann-Whitney U检验和Student’st检验。在干预之间发现了统计学上的显著差异,有利于乳脂组的H2S (p=0.001)。H2S的中位数从158 ppb降至26 ppb。在其他两种成分的水平上,两个治疗组都没有出现不同程度的下降。在牙周参数上观察到统计学上的显著差异,有利于乳糜组。GI指数由1.8降至1
{"title":"The effect of Chios mastic toothpaste on halitosis and oral hygiene in orthodontic patients: a randomized clinical trial.","authors":"Antigoni Alexiou, Ioulia-Maria Mylonopoulou, Spyros Papageorgiou, William Papaioannou, Iosif Sifakakis","doi":"10.1088/1752-7163/adf1bf","DOIUrl":"10.1088/1752-7163/adf1bf","url":null,"abstract":"<p><p>Chios mastic gum, derived from Pistacia lentiscus variation chia, has emerged as a significant natural remedy to improve oral health and mitigate halitosis. This study aimed to examine the effect of mastic toothpaste on halitosis, plaque, and gingival indices in adolescents undergoing orthodontic treatment with fixed appliances. This study was a double-blind, placebo-controlled, parallel-group, randomized clinical trial. Thirty-two patients were randomly divided into two groups: A) mastic-toothpaste group and B) placebo-toothpaste group. Participants in both groups used the assigned toothpaste three times daily for 14 d. The primary outcome was objective hydrogen sulfide (H<sub>2</sub>S) levels in breath, measured using a gas chromatograph. The secondary outcomes were dimethyl sulfide and methyl-mercaptan levels, as well as the Silness and Löe Gingival Index (GI) and the Modified Silness and Löe Plaque Index (PI-M). Assessments were conducted at baseline and after two weeks. Data were analyzed using the Mann-Whitney<i>U</i>test and Student's<i>t</i>-test. A statistically significant difference was found between interventions, in favor of the mastic group's H<sub>2</sub>S (<i>p</i>= 0.001). The H<sub>2</sub>S median levels decreased from 158 parts per billion (ppb) to 26 ppb. Neither treatment group experienced a different decline in the levels of the other two components. Statistically significant differences were observed in the periodontal parameters, favoring the mastic group. The GI index decreased from 1.8 to 1 [<i>p</i>< 0.001, 95% CI: -0.7, -0.4], whereas the PI-M index decreased from 1.2 to 0.8 [<i>p</i>< 0.001, (95% CI: -0.5, -0.2)]. Mastic toothpaste may be an alternative option to reduce halitosis in adolescents undergoing orthodontic treatment with fixed appliances. Regular use of this toothpaste may lead to a clinically meaningful reduction in plaque and gingival indices (ClinicalTrials.gov, NCT06766097).</p>","PeriodicalId":15306,"journal":{"name":"Journal of breath research","volume":" ","pages":""},"PeriodicalIF":3.4,"publicationDate":"2025-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144667676","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The machine learning prediction model of non-alcoholic fatty liver; the role of hydrogen and methane breath tests. 非酒精性脂肪肝的机器学习预测模型氢气和甲烷呼吸测试的作用。
IF 3.7 4区 医学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-13 DOI: 10.1088/1752-7163/addff9
Sanggwon An, Eui-Young Cho, Junho Hwang, Hyunseong Yang, Jungho Hwang, Kyusik Shin, Kyu-Nam Kim, Wooyoung Lee

Nonalcoholic fatty liver disease (NAFLD) is now the leading cause of global chronic liver disease, affecting approximately 32.4% of the population in various regions and imposing healthcare and economic burdens. The gold standard for the diagnosis of NAFLD, such as liver biopsy, has numerous limitations in large-scale screening. Recent studies have explored the use of machine learning to diagnose NAFLD. In this study, we investigated the effect of the lactulose breath test (LBT) on a machine-learning model for predicting NAFLD. The input variables for machine learning included three combination sets to assess the effect of the LBT results: anthropometric characteristics and blood test results; anthropometric characteristics and LBT results; and anthropometric characteristics, blood test results, and LBT results. The machine learning models developed in this study included linear regression, support vector machine, K-nearest neighbour, Random forest, and extreme gradient boosting (XGBoost) with 536 participants. The model performance was evaluated using six metrics: Accuracy, Area Under the Receiver Operating Characteristic curve (AUROC), specificity, sensitivity, precision, and F1 score. Among the six models, XGBoost had the highest AUROC at 0.88. The AUROC results from the three combination variable sets indicate that the LBT results significantly improve the model performance. LBT results improve the NAFLD prediction model and provide an opportunity for additional NAFLD screening in patients receiving LBT.

非酒精性脂肪性肝病(NAFLD)目前是全球慢性肝病的主要原因,影响各个地区约32.4%的人口,并造成医疗和经济负担。诊断NAFLD的金标准,如肝活检,在大规模筛查中有许多局限性。最近的研究探索了使用机器学习来诊断NAFLD。在这项研究中,我们研究了乳果糖呼吸试验(LBT)对预测NAFLD的机器学习模型的影响。方法:机器学习的输入变量包括三个组合集,用于评估LBT结果的影响:人体测量特征和血液测试结果;人体测量特征和LBT结果;人体测量特征、血液测试结果和LBT结果。本研究中开发的机器学习模型包括线性回归、支持向量机、k近邻、随机森林和极端梯度增强(XGBoost),共有536名参与者。使用六个指标评估模型的性能:准确性、受试者工作特征曲线下面积(AUROC)、特异性、敏感性、精度和F1评分。结果:在5个模型中,XGBoost的AUROC最高,为0.88。三个组合变量集的AUROC结果表明,LBT结果显著提高了模型的性能。结论:LBT结果改善了NAFLD预测模型,并为接受LBT的患者进行额外的NAFLD筛查提供了机会。
{"title":"The machine learning prediction model of non-alcoholic fatty liver; the role of hydrogen and methane breath tests.","authors":"Sanggwon An, Eui-Young Cho, Junho Hwang, Hyunseong Yang, Jungho Hwang, Kyusik Shin, Kyu-Nam Kim, Wooyoung Lee","doi":"10.1088/1752-7163/addff9","DOIUrl":"10.1088/1752-7163/addff9","url":null,"abstract":"<p><p>Nonalcoholic fatty liver disease (NAFLD) is now the leading cause of global chronic liver disease, affecting approximately 32.4% of the population in various regions and imposing healthcare and economic burdens. The gold standard for the diagnosis of NAFLD, such as liver biopsy, has numerous limitations in large-scale screening. Recent studies have explored the use of machine learning to diagnose NAFLD. In this study, we investigated the effect of the lactulose breath test (LBT) on a machine-learning model for predicting NAFLD. The input variables for machine learning included three combination sets to assess the effect of the LBT results: anthropometric characteristics and blood test results; anthropometric characteristics and LBT results; and anthropometric characteristics, blood test results, and LBT results. The machine learning models developed in this study included linear regression, support vector machine, K-nearest neighbour, Random forest, and extreme gradient boosting (XGBoost) with 536 participants. The model performance was evaluated using six metrics: Accuracy, Area Under the Receiver Operating Characteristic curve (AUROC), specificity, sensitivity, precision, and F1 score. Among the six models, XGBoost had the highest AUROC at 0.88. The AUROC results from the three combination variable sets indicate that the LBT results significantly improve the model performance. LBT results improve the NAFLD prediction model and provide an opportunity for additional NAFLD screening in patients receiving LBT.</p>","PeriodicalId":15306,"journal":{"name":"Journal of breath research","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144215956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Chloroform release from ageing cells andDrosophila DJ-1βmutants. 衰老细胞和果蝇DJ-1β突变体释放的氯仿。
IF 3.7 4区 医学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-10 DOI: 10.1088/1752-7163/addf70
Theo Issitt, Timothy Johnston, Chris Ugbode, Juste Grumulaityte, Amy Harmens, William J Brackenbury, Sean T Sweeney, Kelly R Redeker

Volatile organic compounds (VOCs) offer potential for non-invasive diagnosis as biomarkers of disease and metabolism. In complex biological matrices, such as breath however, identifying useful biomarkers from hundreds, or even thousands of VOCs can be challenging. Models of disease, such as cellular or animal models, offer a means to elucidate VOC metabolisms, for accurate targeted studies in patient samples. Neurodegenerative conditions, such as Parkinson's have been associated with changed VOCs, offering a potential for early diagnostics and interventions improving treatments and outcomes for patients. Here, three separate models including; human HEK-293t cells, isolated primary rat glial cells, andDrosophilafruit flies (wild type and a mutant of the Parkinson's associated gene,DJ-1β) were grown for an extended period and levels of the VOC chloroform investigated using custom static headspace sampling chambers. Samples were analysed using targeted gas chromatography mass spectroscopy with selected ion monitoring mode, measuring chloroform at masses 83/85. Chloroform levels were shown to dramatically increase in all models over time. HEK-293t cells revealed a 60-fold increase after 10 weeks, glial cells revealed a 10-fold increase after 3-4 weeks andDJ-1βmutant flies revealed significant increases compared to control flies at 4 weeks. These results, taken together, suggest that chloroform release is related to ageing in these models and may provide a target for neurodegenerative studies. We present here the first evidence of chloroform being actively produced by human and rat cells and the first observation of volatile metabolisms inDrosophila. Recent clinical studies have also identified increased chloroform flux in the breath of patients, supporting the translational potential of our findings.

挥发性有机化合物(VOCs)作为疾病和代谢的生物标志物,为非侵入性诊断提供了潜力。然而,在复杂的生物基质中,例如呼吸,从数百甚至数千种挥发性有机化合物中识别有用的生物标志物可能具有挑战性。疾病模型,如细胞或动物模型,提供了一种阐明挥发性有机化合物代谢的方法,以便在患者样本中进行准确的靶向研究。神经退行性疾病,如帕金森氏症与挥发性有机化合物的变化有关,这为早期诊断和干预提供了可能,可以改善患者的治疗和结果。这里,三个独立的模型包括;人类HEK-293t细胞、分离的原代大鼠胶质细胞和果蝇(野生型和帕金森相关基因DJ-1β的突变体)被培养了很长一段时间,并使用定制的静态顶空取样室研究了VOC三氯仿的水平。采用选择性离子监测(SIM)模式的靶向气相色谱-质谱(GC/MS)对样品进行分析,测量质量为83/85的氯仿。随着时间的推移,所有模型中的氯仿含量都急剧增加。HEK-293t细胞在10周后增加了60倍,胶质细胞在3至4周后增加了10倍,DJ-1β突变蝇在4周时与对照蝇相比显着增加。这些结果综合起来表明,在这些模型中,氯仿释放与衰老有关,并可能为神经退行性研究提供一个靶点。我们在这里提出了人类和大鼠细胞积极产生氯仿的第一个证据,并首次观察到果蝇的挥发性代谢。最近的临床研究也发现患者呼吸中的氯仿通量增加,支持我们研究结果的转化潜力。
{"title":"Chloroform release from ageing cells and<i>Drosophila DJ-1β</i>mutants.","authors":"Theo Issitt, Timothy Johnston, Chris Ugbode, Juste Grumulaityte, Amy Harmens, William J Brackenbury, Sean T Sweeney, Kelly R Redeker","doi":"10.1088/1752-7163/addf70","DOIUrl":"10.1088/1752-7163/addf70","url":null,"abstract":"<p><p>Volatile organic compounds (VOCs) offer potential for non-invasive diagnosis as biomarkers of disease and metabolism. In complex biological matrices, such as breath however, identifying useful biomarkers from hundreds, or even thousands of VOCs can be challenging. Models of disease, such as cellular or animal models, offer a means to elucidate VOC metabolisms, for accurate targeted studies in patient samples. Neurodegenerative conditions, such as Parkinson's have been associated with changed VOCs, offering a potential for early diagnostics and interventions improving treatments and outcomes for patients. Here, three separate models including; human HEK-293t cells, isolated primary rat glial cells, and<i>Drosophila</i>fruit flies (wild type and a mutant of the Parkinson's associated gene,<i>DJ-1β</i>) were grown for an extended period and levels of the VOC chloroform investigated using custom static headspace sampling chambers. Samples were analysed using targeted gas chromatography mass spectroscopy with selected ion monitoring mode, measuring chloroform at masses 83/85. Chloroform levels were shown to dramatically increase in all models over time. HEK-293t cells revealed a 60-fold increase after 10 weeks, glial cells revealed a 10-fold increase after 3-4 weeks and<i>DJ-1β</i>mutant flies revealed significant increases compared to control flies at 4 weeks. These results, taken together, suggest that chloroform release is related to ageing in these models and may provide a target for neurodegenerative studies. We present here the first evidence of chloroform being actively produced by human and rat cells and the first observation of volatile metabolisms in<i>Drosophila</i>. Recent clinical studies have also identified increased chloroform flux in the breath of patients, supporting the translational potential of our findings.</p>","PeriodicalId":15306,"journal":{"name":"Journal of breath research","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144208633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparison of breath biomarker studies for early diagnosis of chronic kidney disease: a review. 呼吸生物标志物在慢性肾脏疾病早期诊断中的比较研究综述
IF 3.7 4区 医学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-06-03 DOI: 10.1088/1752-7163/addc8a
Yang Wang, Huachun Weng, Dongpo Xu, Suhua Zhang

Chronic kidney disease (CKD) is a long-term progressive disease. The key to treatment lies in early diagnosis and timely intervention. How to achieve early diagnosis of CKD has always been an important challenge. Exhaled breath sample analysis, as an emerging method, has attracted much attention due to its non-invasiveness and the convenience of sample collection. Compared with the complex traditional detection methods, it is more suitable for large-scale screening. The main purpose of this review is to extensively collect relevant literature on the research of exhaled breath biomarkers for CKD, summarize the potential biomarkers discovered in these studies, and compare the similarities and differences. Through in-depth analysis of the causes of these differences and commonalities, this review aims to explore whether these potential exhaled breath biomarkers could serve as reliable indicators for the early diagnosis of CKD.

慢性肾脏疾病(CKD)是一种长期进行性疾病。治疗的关键在于早期诊断和及时干预。如何实现CKD的早期诊断一直是一个重要的挑战。呼气样本分析作为一种新兴的检测方法,因其无创性和采集方便而备受关注。与复杂的传统检测方法相比,更适合大规模筛选。本综述的主要目的是广泛收集CKD呼气生物标志物研究的相关文献,总结这些研究中发现的潜在生物标志物,并比较其异同。通过深入分析这些差异和共性的原因,本综述旨在探讨这些潜在的呼气生物标志物是否可以作为CKD早期诊断的可靠指标。
{"title":"Comparison of breath biomarker studies for early diagnosis of chronic kidney disease: a review.","authors":"Yang Wang, Huachun Weng, Dongpo Xu, Suhua Zhang","doi":"10.1088/1752-7163/addc8a","DOIUrl":"10.1088/1752-7163/addc8a","url":null,"abstract":"<p><p>Chronic kidney disease (CKD) is a long-term progressive disease. The key to treatment lies in early diagnosis and timely intervention. How to achieve early diagnosis of CKD has always been an important challenge. Exhaled breath sample analysis, as an emerging method, has attracted much attention due to its non-invasiveness and the convenience of sample collection. Compared with the complex traditional detection methods, it is more suitable for large-scale screening. The main purpose of this review is to extensively collect relevant literature on the research of exhaled breath biomarkers for CKD, summarize the potential biomarkers discovered in these studies, and compare the similarities and differences. Through in-depth analysis of the causes of these differences and commonalities, this review aims to explore whether these potential exhaled breath biomarkers could serve as reliable indicators for the early diagnosis of CKD.</p>","PeriodicalId":15306,"journal":{"name":"Journal of breath research","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-06-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144132430","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Association between oral bacterial species and halitosis: findings from a study of a community-based Japanese population. 口腔细菌种类与口臭之间的关系:来自日本社区人群的研究结果。
IF 3.7 4区 医学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-30 DOI: 10.1088/1752-7163/addc0c
Shotaro Komatsu, Yoshihiro Tamura, Koki Takagi, Shunya Yamazaki, Akihiro Matsumura, Kosei Kubota, Norihiko Narita, Tomoh Matsumiya, Kaori Sawada, Tatsuya Mikami, Shigeyuki Nakaji, Wataru Kobayashi

Halitosis is known to be associated with oral bacteria; however, its specific relationship with particular bacterial species within the oral microbiota remains uncertain. Our objective was to identify oral bacterial species associated with volatile sulfur compound (VSC) production that contribute to halitosis in a community-based Japanese population. This study included 1018 participants. Tongue plaque samples were collected and the oral microbiome was analyzed via 16S rDNA amplicon sequencing. Participants with VSC levels greater than 250 ppb were categorized as having oral malodor. Linear discriminant analysis effect size was used to compare bacterial compositions between participants with and without halitosis. In this study, we identified 37 bacterial genera in tongue plaque samples. Significant differences in bacterial composition were found between the malodor and control groups.Porphyromonas, Fusobacterium, andSolobacteriumwere more abundant in the malodor group, whereasStreptococcusandRothiawere more prevalent in the control group. Multiple regression analysis further revealed thatPorphyromonasandSolobacteriumabundances were positively correlated with oral malodor. We found that halitosis in this Japanese population is associated primarily with pathogenic periodontal bacteria (members of the red and orange complexes) andSolobacterium moorei. The bacterial community composition of individuals with halitosis differs significantly from that of healthy individuals, emphasizing the role of specific bacterial species in oral malodor development. These findings increase our understanding of the microbial basis of halitosis and suggest that targetingSolobacterium, along with treating periodontal disease, may be effective in combating halitosis.

已知口臭与口腔细菌有关;然而,其与口腔微生物群中特定细菌种类的具体关系仍不确定。我们的目的是确定与挥发性硫化合物(VSC)生产相关的口腔细菌种类,这些细菌在日本社区人群中导致口臭。这项研究包括1018名参与者。采集舌菌斑样本,通过16S rDNA扩增子测序分析口腔微生物组。VSC水平超过250 ppb的参与者被归类为口腔异味。使用线性判别分析效应大小(LEfSe)来比较有和没有口臭的参与者之间的细菌组成。在本研究中,我们在舌斑样本中鉴定出37种细菌属。在恶臭组和对照组之间发现了细菌组成的显著差异。卟啉单胞菌、梭杆菌和梭菌在恶臭组中更为丰富,而链球菌和罗氏菌在对照组中更为普遍。多元回归分析进一步发现,卟啉单胞菌和梭菌丰度与口腔异味呈正相关。我们发现日本人群的口臭主要与致病性牙周细菌(红色和橙色复合体的成员)和moorei梭菌有关。口臭个体的细菌群落组成与健康个体有显著差异,强调了特定细菌种类在口腔异味发展中的作用。这些发现增加了我们对口臭的微生物基础的理解,并表明针对梭菌,以及治疗牙周病,可能有效地对抗口臭。
{"title":"Association between oral bacterial species and halitosis: findings from a study of a community-based Japanese population.","authors":"Shotaro Komatsu, Yoshihiro Tamura, Koki Takagi, Shunya Yamazaki, Akihiro Matsumura, Kosei Kubota, Norihiko Narita, Tomoh Matsumiya, Kaori Sawada, Tatsuya Mikami, Shigeyuki Nakaji, Wataru Kobayashi","doi":"10.1088/1752-7163/addc0c","DOIUrl":"10.1088/1752-7163/addc0c","url":null,"abstract":"<p><p>Halitosis is known to be associated with oral bacteria; however, its specific relationship with particular bacterial species within the oral microbiota remains uncertain. Our objective was to identify oral bacterial species associated with volatile sulfur compound (VSC) production that contribute to halitosis in a community-based Japanese population. This study included 1018 participants. Tongue plaque samples were collected and the oral microbiome was analyzed via 16S rDNA amplicon sequencing. Participants with VSC levels greater than 250 ppb were categorized as having oral malodor. Linear discriminant analysis effect size was used to compare bacterial compositions between participants with and without halitosis. In this study, we identified 37 bacterial genera in tongue plaque samples. Significant differences in bacterial composition were found between the malodor and control groups.<i>Porphyromonas, Fusobacterium</i>, and<i>Solobacterium</i>were more abundant in the malodor group, whereas<i>Streptococcus</i>and<i>Rothia</i>were more prevalent in the control group. Multiple regression analysis further revealed that<i>Porphyromonas</i>and<i>Solobacterium</i>abundances were positively correlated with oral malodor. We found that halitosis in this Japanese population is associated primarily with pathogenic periodontal bacteria (members of the red and orange complexes) and<i>Solobacterium moorei</i>. The bacterial community composition of individuals with halitosis differs significantly from that of healthy individuals, emphasizing the role of specific bacterial species in oral malodor development. These findings increase our understanding of the microbial basis of halitosis and suggest that targeting<i>Solobacterium</i>, along with treating periodontal disease, may be effective in combating halitosis.</p>","PeriodicalId":15306,"journal":{"name":"Journal of breath research","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-05-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144127490","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phenol as a breath marker for hemodialysis of chronic kidney disease patients. 苯酚作为慢性肾病患者血液透析的呼吸标志物。
IF 3.7 4区 医学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-27 DOI: 10.1088/1752-7163/add958
Isabell Eickel, Anne-Christine Zygmunt, Frank Streit, Björn Tampe, Nils Kunze-Szikszay, Thorsten Perl

We aimed to identify biomarkers in breath analysis with multicapillary column-ion mobility spectrometry (MCC-IMS) to monitor the haemodialysis for chronic kidney disease (CKD) patients fast and non-invasive. Six patients' breath was analyzed via MCC-IMS before and after dialysis and compared to blood plasma samples analyzed via ultra performance liquid chromatography-fluorescence detector for potential renal failure biomarkers. Additionally, breath from six healthy control persons was analyzed. Phenol was found as a breath marker for CKD. For three patients the phenol concentration in breath and plasma was elevated before and decreased during dialysis and reached values in the range of healthy control persons. The peak-intensity of phenol-monomer peaks ofP01-P04 was reduced from an average of 16.58 (5.42-27.28) a.U. to 7.03 (0.00-13.65) a.U., which is a reduction by 42.51 (-10.55-100.00) %. The control group has an average peak-intensity of 8.50 (5.00-12.00) a.U. This study shows that the measurement of phenol via breath analysis could be used to monitor the haemodialysis for CKD-patients and might also be usable for the calculation of haemodialysis dose in the future.The study is registered in the German Clinical Trials Register under number DRKS00029679.

背景:我们旨在利用MCC-IMS识别呼吸分析中的生物标志物,以快速、无创地监测CKD患者的血液透析。材料与方法:通过MCC-IMS分析6例患者透析前后的呼吸,并与UPLC-FLD分析的血浆样本进行比较,以寻找潜在的肾功能衰竭生物标志物。此外,还分析了6名健康对照者的呼吸。结果:苯酚是CKD的呼吸标志物。3例患者呼吸和血浆中酚浓度在透析前升高,透析期间降低,达到健康对照范围。P01 ~ P04的酚单体峰强度由平均16.58 (5.42 27.28)a.U降至7.03 (0.00 13.65)a.U,降低了42.51(-10.55 ~ 100.00)%。对照组平均峰值强度为8.50 (5.00 - 12.00)a.U。结论:本研究表明通过呼吸分析测量苯酚可用于ckd患者血液透析的监测,也可用于将来血液透析剂量的计算。该研究已在德国临床试验注册中心注册,编号为DRKS00029679。
{"title":"Phenol as a breath marker for hemodialysis of chronic kidney disease patients.","authors":"Isabell Eickel, Anne-Christine Zygmunt, Frank Streit, Björn Tampe, Nils Kunze-Szikszay, Thorsten Perl","doi":"10.1088/1752-7163/add958","DOIUrl":"10.1088/1752-7163/add958","url":null,"abstract":"<p><p>We aimed to identify biomarkers in breath analysis with multicapillary column-ion mobility spectrometry (MCC-IMS) to monitor the haemodialysis for chronic kidney disease (CKD) patients fast and non-invasive. Six patients' breath was analyzed via MCC-IMS before and after dialysis and compared to blood plasma samples analyzed via ultra performance liquid chromatography-fluorescence detector for potential renal failure biomarkers. Additionally, breath from six healthy control persons was analyzed. Phenol was found as a breath marker for CKD. For three patients the phenol concentration in breath and plasma was elevated before and decreased during dialysis and reached values in the range of healthy control persons. The peak-intensity of phenol-monomer peaks of<i>P</i>01-<i>P</i>04 was reduced from an average of 16.58 (5.42-27.28) a.U. to 7.03 (0.00-13.65) a.U., which is a reduction by 42.51 (-10.55-100.00) %. The control group has an average peak-intensity of 8.50 (5.00-12.00) a.U. This study shows that the measurement of phenol via breath analysis could be used to monitor the haemodialysis for CKD-patients and might also be usable for the calculation of haemodialysis dose in the future.The study is registered in the German Clinical Trials Register under number DRKS00029679.</p>","PeriodicalId":15306,"journal":{"name":"Journal of breath research","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-05-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144078417","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exhaled breath protein composition in patients hospitalised during the first wave of COVID-19. 第一波COVID-19住院患者呼出气体蛋白质组成
IF 3.7 4区 医学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-16 DOI: 10.1088/1752-7163/add617
Inger Lise Gade, Jacob Bodilsen, Theis Mariager, Sandra Hertz, Lærke Storgaard Duerlund, Christian Kanstrup Holm, Poul Henning Madsen, Tue Bjerg Bennike, Bent Honoré

Coronavirus 2019 (COVID-19) leads to substantial morbidity and excess mortality all over the world which may be aggravated by the propensity of Severe Acute Respiratory Syndrome Coronavirus 2 to mutate. Mechanisms for development of severe COVID-19 are poorly understood. The air we exhale contains endogenous proteins and represents a highly accessible yet unexploited biological sample that can be collected without use of invasive procedures. We collected exhaled breath condensate samples from 28 patients hospitalised due to COVID-19 at admission and discharge using RTubes™. Bottom-up proteomic analysis of tandem mass-tag-labelled single exhaled breath samples was performed in 25 exhaled breath samples collected at admission and 13 samples collected at discharge using discovery-based nano-liquid chromatography-tandem mass spectrometry. In total, 232 proteins were identified in the exhaled breath samples after stringent data filtering. Most of the exhaled proteins were related to the immune systems function and regulation. The levels of four proteins, KRT77, DCD, CASP14 and SERPINB12 decreased from admission to discharge as patients generally recovered from the infection. These proteins are expressed in lung epithelium or macrophages and are associated with the regulation of inflammation drivers in COVID-19. In particular, the alarmins S100A8 and S100A9 accounted for 8% of the exhaled breath proteins. In conclusion, our study demonstrates that analysis of the exhaled breath protein composition can give insights into mechanisms related to inflammation and response to infections, and hereby also of severe COVID-19.Clinical Trial No: NCT04598620.

COVID-19在世界各地导致大量发病率和超额死亡率,这可能因SARS-CoV-2的变异倾向而加剧。严重COVID-19的发展机制尚不清楚。我们呼出的空气中含有内源性蛋白质,代表着一种高度可接近但尚未开发的生物样本,可以在不使用侵入性程序的情况下收集。我们使用RTubes™收集了28例因COVID-19住院的患者入院和出院时的呼出冷凝水样本。采用基于发现的纳米液相色谱-串联质谱法,对入院时收集的25个有串联质量标签的单次呼气样本和出院时收集的13个样本进行自下而上的蛋白质组学分析。经过严格的数据过滤,总共在呼出样本中鉴定出232种蛋白质。呼出的蛋白质大部分与免疫系统功能和调节有关。KRT77、DCD、CASP14和SERPINB12 4种蛋白的水平随着患者普遍从感染中康复而从入院到出院期间下降。这些蛋白在肺上皮细胞或巨噬细胞中表达,并与COVID-19炎症驱动因素的调节有关。特别是,报警蛋白S100A8和S100A9占呼出蛋白的8%。总之,我们的研究表明,对呼出气体蛋白质组成的分析可以深入了解与炎症和感染反应相关的机制,从而也可以了解严重的COVID-19。
{"title":"Exhaled breath protein composition in patients hospitalised during the first wave of COVID-19.","authors":"Inger Lise Gade, Jacob Bodilsen, Theis Mariager, Sandra Hertz, Lærke Storgaard Duerlund, Christian Kanstrup Holm, Poul Henning Madsen, Tue Bjerg Bennike, Bent Honoré","doi":"10.1088/1752-7163/add617","DOIUrl":"10.1088/1752-7163/add617","url":null,"abstract":"<p><p>Coronavirus 2019 (COVID-19) leads to substantial morbidity and excess mortality all over the world which may be aggravated by the propensity of Severe Acute Respiratory Syndrome Coronavirus 2 to mutate. Mechanisms for development of severe COVID-19 are poorly understood. The air we exhale contains endogenous proteins and represents a highly accessible yet unexploited biological sample that can be collected without use of invasive procedures. We collected exhaled breath condensate samples from 28 patients hospitalised due to COVID-19 at admission and discharge using RTubes™. Bottom-up proteomic analysis of tandem mass-tag-labelled single exhaled breath samples was performed in 25 exhaled breath samples collected at admission and 13 samples collected at discharge using discovery-based nano-liquid chromatography-tandem mass spectrometry. In total, 232 proteins were identified in the exhaled breath samples after stringent data filtering. Most of the exhaled proteins were related to the immune systems function and regulation. The levels of four proteins, KRT77, DCD, CASP14 and SERPINB12 decreased from admission to discharge as patients generally recovered from the infection. These proteins are expressed in lung epithelium or macrophages and are associated with the regulation of inflammation drivers in COVID-19. In particular, the alarmins S100A8 and S100A9 accounted for 8% of the exhaled breath proteins. In conclusion, our study demonstrates that analysis of the exhaled breath protein composition can give insights into mechanisms related to inflammation and response to infections, and hereby also of severe COVID-19.Clinical Trial No: NCT04598620.</p>","PeriodicalId":15306,"journal":{"name":"Journal of breath research","volume":" ","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-05-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143968123","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
MicroRNA expression in exhaled breath condensate differentiates between asthma and chronic obstructive pulmonary disease. 呼气凝析液中MicroRNA的表达可区分哮喘和慢性阻塞性肺疾病。
IF 3.7 4区 医学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-14 DOI: 10.1088/1752-7163/add0d3
Bijay Pattnaik, Sunil Bangaru, Divyanjali Rai, Jaya Tak, Naveen Bhatraju, Seetu Kashyap, Jyoti Kumari, Umashankar Verma, Geetika Yadav, R S Dhaliwal, Saurabh Mittal, Pawan Tiwari, Vijay Hadda, Karan Madan, Anurag Agrawal, Randeep Guleria, Anant Mohan

Asthma and chronic obstructive pulmonary disease (COPD) have many common clinical characteristics, thus making reliable differentiation between these two challenging. The goal of this study is to determine the clinical value of exhaled breath condensate (EBC) derived miRNAs to discriminate between asthma and COPD. This cross-sectional study included 65 subjects each with asthma (mean/SD age: 39/13 years, Malen/%: 27/42%), COPD (mean/SD age: 61/9 years, Malen/%: 53/81%) and healthy controls (mean/SD age: 34.4/12 years, Malen/%: 50/77%). EBC was collected using R-tubes and 40 EBC samples from each group were used for miRNA profiling. Profiling data was curated and the most highly expressed miRNAs were shortlisted for further validation. Selected microRNAs were subsequently validated using quantitative-PCR in an independent set of 25 subjects from both disease groups. A total of 103 miRNAs were significantly upregulated in the EBC of asthma patients and 97 miRNAs were upregulated in the EBC of COPD patients compared to control group. However, miR-512-3p was downregulated and miR-517c was upregulated in COPD compared with asthma. The top unique miRNAs were shortlisted for further validation. Of these, miR-375 was upregulated in asthma, while miR-297, miR-367 and miR-539 were upregulated in COPD compared with healthy controls. Further, miR-512-3p was down-regulated and miR-517c was upregulated in COPD compared with asthma. The comparison exhibited excellent discriminatory power with 100% differential expression of miR-512-3p and miR-517c secreted by respiratory cells, they could be quantitated in EBC samples and used to differentiate between asthma and COPD.

哮喘和慢性阻塞性肺疾病(COPD)具有许多共同的临床特征,因此对两者进行可靠的鉴别具有挑战性。本研究的目的是确定呼气凝聚物(EBC)衍生的mirna在区分哮喘和COPD方面的临床价值。这项横断面研究包括65名哮喘(平均/SD年龄:39/13岁,Malen/%: 27/42%)、COPD(平均/SD年龄:61/9岁,Malen/%: 53/81%)和健康对照(平均/SD年龄:34.4/12岁,Malen/%: 50/77%)的受试者。采用r管收集EBC,每组40份EBC样本用于miRNA分析。对分析数据进行整理,并将最高表达的mirna列入候选名单以进行进一步验证。随后,在来自两种疾病组的25名独立受试者中,使用定量pcr验证选定的microrna。与对照组相比,哮喘患者EBC中有103个mirna显著上调,COPD患者EBC中有97个mirna上调。然而,与哮喘相比,miR-512-3p在COPD中下调,miR-517c上调。最独特的mirna被列入候选名单以进行进一步验证。其中,miR-375在哮喘中上调,而miR-297、miR-367和miR-539在COPD中与健康对照组相比上调。此外,与哮喘相比,miR-512-3p在COPD中下调,miR-517c上调。该比较显示出极好的鉴别力,呼吸细胞分泌的miR-512-3p和miR-517c的差异表达为100%,它们可以在EBC样本中定量表达,并用于区分哮喘和COPD。
{"title":"MicroRNA expression in exhaled breath condensate differentiates between asthma and chronic obstructive pulmonary disease.","authors":"Bijay Pattnaik, Sunil Bangaru, Divyanjali Rai, Jaya Tak, Naveen Bhatraju, Seetu Kashyap, Jyoti Kumari, Umashankar Verma, Geetika Yadav, R S Dhaliwal, Saurabh Mittal, Pawan Tiwari, Vijay Hadda, Karan Madan, Anurag Agrawal, Randeep Guleria, Anant Mohan","doi":"10.1088/1752-7163/add0d3","DOIUrl":"https://doi.org/10.1088/1752-7163/add0d3","url":null,"abstract":"<p><p>Asthma and chronic obstructive pulmonary disease (COPD) have many common clinical characteristics, thus making reliable differentiation between these two challenging. The goal of this study is to determine the clinical value of exhaled breath condensate (EBC) derived miRNAs to discriminate between asthma and COPD. This cross-sectional study included 65 subjects each with asthma (mean/SD age: 39/13 years, Male<i>n</i>/%: 27/42%), COPD (mean/SD age: 61/9 years, Male<i>n</i>/%: 53/81%) and healthy controls (mean/SD age: 34.4/12 years, Male<i>n</i>/%: 50/77%). EBC was collected using R-tubes and 40 EBC samples from each group were used for miRNA profiling. Profiling data was curated and the most highly expressed miRNAs were shortlisted for further validation. Selected microRNAs were subsequently validated using quantitative-PCR in an independent set of 25 subjects from both disease groups. A total of 103 miRNAs were significantly upregulated in the EBC of asthma patients and 97 miRNAs were upregulated in the EBC of COPD patients compared to control group. However, miR-512-3p was downregulated and miR-517c was upregulated in COPD compared with asthma. The top unique miRNAs were shortlisted for further validation. Of these, miR-375 was upregulated in asthma, while miR-297, miR-367 and miR-539 were upregulated in COPD compared with healthy controls. Further, miR-512-3p was down-regulated and miR-517c was upregulated in COPD compared with asthma. The comparison exhibited excellent discriminatory power with 100% differential expression of miR-512-3p and miR-517c secreted by respiratory cells, they could be quantitated in EBC samples and used to differentiate between asthma and COPD.</p>","PeriodicalId":15306,"journal":{"name":"Journal of breath research","volume":"19 3","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-05-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144020224","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Overcoming methodological barriers in electronic nose clinical studies, a simulation data-based approach. 克服电子鼻临床研究的方法学障碍,一种基于模拟数据的方法。
IF 3.7 4区 医学 Q1 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-05-09 DOI: 10.1088/1752-7163/add291
Milou L M van Riswijk, Bastiaan F M van Tintelen, Ruben H Lucas, Job van der Palen, Peter D Siersema

Analysis of volatile organic compounds by electronic nose (e-nose) may address gaps in non-invasive screening for neoplasia. Machine learning impacts study design and sample size requirements, but guidance on clinical study design is limited. This study evaluates how neoplasia prevalence, augmented data, and the number of e-nose devices impact sample size requirements. Simulated e-nose breath test data were created using real-world study data. We examined the effect of varying neoplasia prevalence (50%-5%) and data augmentation on model performance, as well as the impact of using multiple devices. Prediction models were developed using single value decomposition and random forest, and convolutional neural networks. Model performance was displayed as area under the receiver operating characteristics curve and F1-score. Stable model performance was defined as the phase where additional data no longer increases model performance. We found that lower neoplasia prevalence significantly increased sample size requirements, with low-prevalence settings (5%) requiring up to five times more data than high-prevalence settings (50%) for stable model performance. Model performance varied between devices, and integrating data from multiple devices required larger sample sizes. Approximately 400 data points per device at 50% prevalence, and 2100 data points at 5% prevalence, were necessary to reach stable model performance. Concluding, sample size requirements for e-nose studies are heavily influenced by disease prevalence and the number of devices used. Limiting device variability and ensuring sufficient case and control samples per device are crucial for achieving reliable predictive performance. Specific requirements will vary based on sensor and disease characteristics.ClinicalTrials.gov Identifier:Clinicaltrials.gov Identifier NCT03346005 (model study) and NCT04357158 (validation study).

通过电子鼻分析挥发性有机化合物可能会弥补肿瘤非侵入性筛查的空白。机器学习影响研究设计和样本量要求,但临床研究设计的指导是有限的。本研究评估了肿瘤患病率、增强数据和电子鼻设备数量如何影响样本量要求。模拟电子鼻呼吸测试数据是使用真实世界的研究数据创建的。我们研究了不同肿瘤患病率(50%-5%)和数据增强对模型性能的影响,以及使用多种设备的影响。利用单值分解、随机森林和卷积神经网络建立预测模型。模型表现以受试者工作特征曲线下面积和f1评分显示。稳定的模型性能被定义为附加数据不再增加模型性能的阶段。我们发现,较低的肿瘤患病率显著增加了样本量要求,低患病率设置(5%)比高患病率设置(50%)需要多达5倍的数据来稳定模型性能。模型性能因设备而异,集成来自多个设备的数据需要更大的样本量。为了达到稳定的模型性能,每个设备在50%的流行率下需要大约400个数据点,在5%的流行率下需要2100个数据点。总之,电子鼻研究的样本量要求在很大程度上受到疾病流行程度和使用设备数量的影响。限制设备可变性,确保每个设备有足够的病例和控制样本,对于实现可靠的预测性能至关重要。具体要求将根据传感器和疾病特征而有所不同。临床试验。gov标识符:临床试验。gov标识符NCT03346005(模型研究)和NCT04357158(验证研究)。
{"title":"Overcoming methodological barriers in electronic nose clinical studies, a simulation data-based approach.","authors":"Milou L M van Riswijk, Bastiaan F M van Tintelen, Ruben H Lucas, Job van der Palen, Peter D Siersema","doi":"10.1088/1752-7163/add291","DOIUrl":"10.1088/1752-7163/add291","url":null,"abstract":"<p><p>Analysis of volatile organic compounds by electronic nose (e-nose) may address gaps in non-invasive screening for neoplasia. Machine learning impacts study design and sample size requirements, but guidance on clinical study design is limited. This study evaluates how neoplasia prevalence, augmented data, and the number of e-nose devices impact sample size requirements. Simulated e-nose breath test data were created using real-world study data. We examined the effect of varying neoplasia prevalence (50%-5%) and data augmentation on model performance, as well as the impact of using multiple devices. Prediction models were developed using single value decomposition and random forest, and convolutional neural networks. Model performance was displayed as area under the receiver operating characteristics curve and F1-score. Stable model performance was defined as the phase where additional data no longer increases model performance. We found that lower neoplasia prevalence significantly increased sample size requirements, with low-prevalence settings (5%) requiring up to five times more data than high-prevalence settings (50%) for stable model performance. Model performance varied between devices, and integrating data from multiple devices required larger sample sizes. Approximately 400 data points per device at 50% prevalence, and 2100 data points at 5% prevalence, were necessary to reach stable model performance. Concluding, sample size requirements for e-nose studies are heavily influenced by disease prevalence and the number of devices used. Limiting device variability and ensuring sufficient case and control samples per device are crucial for achieving reliable predictive performance. Specific requirements will vary based on sensor and disease characteristics.<b>ClinicalTrials.gov Identifier:</b>Clinicaltrials.gov Identifier NCT03346005 (model study) and NCT04357158 (validation study).</p>","PeriodicalId":15306,"journal":{"name":"Journal of breath research","volume":"19 3","pages":""},"PeriodicalIF":3.7,"publicationDate":"2025-05-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143965786","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of breath research
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1