Journal of Fungi最新文献

The chytrid fungus Batrachochytrium salamandrivorans (Bsal) poses a significant threat to amphibian biodiversity, driving severe declines in salamander populations in Europe. While understanding the host-pathogen interaction may yield novel avenues for disease mitigation, effective in vitro models are currently lacking. We here develop a cell-culture-based model using A6 cells to reproduce the complete life cycle of Bsal in vitro, encompassing key stages such as β-galactose-associated cell attachment, active host cell penetration, intracellular maturation, host cell death, and Bsal release. Using imaging techniques, we provide evidence that Bsal penetrates A6 cells through a mechanism independent of conventional host actin dynamics. Our comparative analysis reveals that Bsal infection closely mirrors responses observed in native salamander skin tissues, validating the A6 cell line as an effective surrogate for in vivo studies. This research enhances our understanding of Bsal's pathogenicity and emphasizes the potential of the A6 cell model for future studies.

It is well established that root exudates play a crucial role in shaping the assembly of plant rhizosphere microbial communities. Nonetheless, our understanding of how different types of exudates influence the abundance of potential pathogens in soil remains insufficient. Investigating the effects of root exudates on soil-dwelling pathogenic fungi is imperative for a comprehensive understanding of plant-fungal interactions within soil ecosystems and for maintaining soil health. This study aimed to elucidate the effects of the principal components of root exudates-flavonoids (FLA), phenolic acids (PA), and organic acids (OA)-on soil microbial communities and soil properties, as well as to investigate their mechanisms of action on soil potential pathogenic fungi. The results demonstrated that the addition of these components significantly modified the composition and diversity of soil microbial communities, with OA treatment notably altering the composition of dominant microbial taxa. Furthermore, the introduction of these substances facilitated the proliferation of saprophytic fungi. Additionally, the incorporation of flavonoids, phenolic acids, and organic acids led to an increased abundance of potential pathogenic fungi in the soil, particularly in the FLA and PA treatments. It was observed that the addition of these substances enhanced soil fertility, pH, and antioxidant enzyme activity. Specifically, FLA and PA treatments reduced the abundance of dominant microbial taxa, whereas OA treatment altered the composition of these taxa. These findings suggest that the inclusion of flavonoids, phenolic acids, and organic acids could potentially augment the enrichment of soil potential pathogenic fungi by modulating soil properties and enzymatic activities. These results offer valuable insights into the interactions between plants and fungal communities in soil ecosystems and provide a scientific foundation for the management and maintenance of soil health.

Candidemia infection remains a critical challenge in intensive care units (ICUs), with high morbidity and mortality rates despite advances in therapeutic practices. This multicenter prospective surveillance study assessed the epidemiology, clinical management, and mortality predictors of candidemia in critically ill patients across two periods (2010-2012 and 2017-2018) in 11 tertiary hospitals in Brazil. Among 314 ICU patients with candidemia, the overall mortality rate was 60.2%, with no significant reduction over time (58.8% vs. 62.6%, p = 0.721). Candida albicans was the predominant pathogen (43.6%), followed by C. tropicalis (20%) and C. glabrata (13.7%). The use of echinocandins increased significantly in the second period (21.1% to 41.7%, p < 0.001); however, 70% of patients still did not receive these agents as first-line therapy. Catheter removal due to candidemia was performed in only 52.1% of cases but was associated with improved 30-day survival (p < 0.001). Multivariate analysis identified cancer, inadequate treatment, and vasoactive drug use as independent predictors of mortality. Our findings underscore persistent gaps in adherence to guidelines, particularly regarding timely echinocandin initiation and catheter removal. Strengthening therapeutic strategies focused on these key interventions is essential to improving outcomes for ICU patients with candidemia.

Penicillium griseofulvum CF3 is a fungus isolated from healthy strawberry soil, with the potential to promote the growth of plants and enhance their resistance to diseases. However, the genome sequence of P. griseofulvum CF3 remains unclear. Therefore, we performed the whole-genome CCS sequencing of P. griseofulvum CF3 using the PacBio Sequel II platform. The assembled genome comprised 104 contigs, with a total length of 37,564,657 bp, encoding 13,252 protein-coding genes. Comprehensive functional annotation was performed using various BLAST databases, including the non-redundant (Nr) protein sequence database, Gene Ontology (GO), the Kyoto Encyclopedia of Genes and Genomes (KEGG), EuKaryotic Orthologous Groups (KOG), and the Carbohydrate-Active enZymes (CAZy) database, to identify and predict protein-coding genes, tRNAs, and rRNAs. The Antibiotics and Secondary Metabolites Analysis Shell (Antismash) analysis identified 50 biosynthetic gene clusters involved in secondary metabolite production within the P. griseofulvum CF3 genome. The whole-genome sequencing of P. griseofulvum CF3 helps us to understand its potential mechanisms in promoting plant growth and enhancing disease resistance, paving the way for the application of the CF3 strain in sustainable crop production.

Sclerotinia sclerotiorum, a fungal pathogen that is spread worldwide and causes serious diseases on crops, can be parasitized specifically by the mycoparasite Coniothyrium minitans. SsNEP2, encoding a necrosis-inducing protein in S. sclerotiorum, was previously inferred to play a role in the virulence to host plants. In this study, silencing of SsNEP2 in S. sclerotiorum had no significant (p < 0.01) influence on mycelial morphology, while overexpression led to lower mycelial growth and more branches. When amended with the fermentation broth of the SsNEP2 silencing mutants, conidial germination of C. minitans was promoted, while conidial production decreased. When parasitized by C. minitans, enhanced resistance of the SsNEP2 silencing mutants and weaker resistance of the overexpressed transformants were observed compared to the wild-type S. sclerotiorum strain 1980. In addition, the expression of SsNEP2 in C. minitans enhanced mycelial parasitism on S. sclerotiorum and restored the effect of silencing SsNEP2 in S. sclerotiorum on mycoparasitism. Thus, we highlight the role of SsNEP2 as a PAMP-like protein in the mycoparasitism between C. minitans and its host fungus S. sclerotiorum. SsNEP2 can be used to promote the biological potential of C. minitans.

Background: 1, 3-ß-D-Glucan (BDG) is an antigen present in the cell wall of many pathogenic fungi and is used as a marker for the early diagnosis of candidemia and discontinuation of empirical treatment. Changes in the epidemiology of Candida species might have a negative impact on the performance of serum BDG. The aim of this study was to analyze the performance of BDG in candidemia diagnosis focusing on species-specific differences in BDG sensitivity and BDG levels.

Methods: The PRISMA system was used for the systematic search. The following databases were searched for articles published from January 2010 to November 2023: PubMed, Science Direct, and Scopus.

Results: A total of 21 studies that met the inclusion criteria were included, reporting data from 1633 patients with candidemia; 11 reported both sensitivity and specificity, 15 reported species-specific sensitivity, and nine reported species-specific BDG levels. The pooled sensitivity of BDG in all studies was 0.73 (95% confidence interval (CI), 0.66-0.80), while the pooled sensitivity and specificity in 11 studies were 0.81 (95% CI 0.73-0.89) and 0.80 (95% CI 0.74-0.87). BDG pooled sensitivity (all assays) and BDG levels (for assays with cutoff of 80 pg/mL) were the highest in C. krusei (currently Pichia kudriavzevii) and the lowest in C. auris: 0.76 and 417 pg/mL for C. krusei, 0.73 and 345 pg/mL for C. albicans, 0.74 and 356 pg/mL for C. glabrata (currently Nakaseomyces glabrata), 0.70 and 324 pg/mL for C. tropicalis, 0.63 and 95 pg/mL for C. parapsilosis, 0.51 and 62 pg/mL for C. auris, and 0.44 and 79 pg/mL for other Candida species. These differences were statistically significant for BDG sensitivity and levels of C. albicans, C. glabrata, C. krusei, and C. tropicalis compared to C. auris, C. parapsilosis, and other Candida species.

Conclusion: The sensitivity of BDG in candidemia diagnosis depends on the Candida species, with the lowest being for C. auris and C. parapsilosis. This might have a clinical impact in centers where these species are prevalent.

A simple and robust two-dimensional chromatographic fractionation protocol for the isolation of the neuroprotective compound erinacine A from Hericium erinaceus is proposed. This production platform yielded 19.4 mg of erinacine A from approximately 130 g of mushroom material, with a chromatographic purity of 97.4%. The procedure includes extraction, concentration, fractionation, purification, and characterisation of the bioactive compound. The crude H. erinaceus extract was fractionated in the first dimension by normal-phase flash chromatography, and the fraction containing erinacine A was further purified in the second dimension by semi-preparative reversed-phase chromatography. This strategy utilises the orthogonality of the two chromatographic modes to effectively eliminate difficult impurities, including structural isomers and analogues of erinacine A. Complementary analytical approaches such as high-performance thin-layer chromatography (HPTLC) and high-performance liquid chromatography with ultraviolet and tandem mass spectrometric detection (HPLC-UV-MS/MS) were employed to unambiguously confirm erinacine A in the isolated fractions, while HPLC with a charged aerosol detector (CAD) was used to determine its purity. Given the limited commercial availability and the high price of erinacine A, the described method offers a straightforward and cost-effective alternative to obtain this valuable compound for further research and applications.

Mangrove ecosystems are valuable coastal ecosystems; however, studies on the diversity and functional features of their soil fungal communities during restoration are limited. In this study, we examined fungal diversity and trophic modes across mudflat, young mangrove, and mature mangrove stages. We found that Ascomycota and Basidiomycota were the dominant phyla, with saprotrophs as the most abundant trophic mode. The abundance of the major phyla and trophic modes significantly varied across restoration stages. Although fungal alpha (α)-diversity remained stable among the stages, beta (β)-diversity showed significant differentiation. Spearman's analysis and partial Mantel tests revealed that total nitrogen and inorganic phosphorus significantly influenced the fungal α-diversity, whereas temperature and pH primarily shaped the fungal β-diversity. Total nitrogen and carbon were key factors affecting the trophic mode α-diversity, whereas total phosphorus and inorganic phosphorus were the main drivers of the trophic mode β-diversity. Variation partitioning analysis confirmed that nutrients, rather than soil properties, were the primary factors shaping fungal communities and trophic modes. Random forest analysis identified key bioindicators, including species such as Paraphyton cookei, and trophic modes such as saprotrophs, both of which were strongly influenced by soil carbon. These findings advance our understanding of fungal ecology in mangrove restoration.

The study of the intersection between biodiversity and biotechnology has revealed a rich source of innovations. Fungi, with their vast range of morphologies and lifestyles, thrive in various habitats, including caves. With impressive metabolic characteristics, they play a key role in producing essential biotechnological compounds for various economic sectors. This paper aims to consolidate evidence on the biotechnological potential of fungi isolated from caves, highlighting the urgency of conserving and exploring these ecosystems. For this purpose, we conducted a comprehensive literature search using scientific databases (SciELO, Medline Complete, Medline/PubMed, Web of Science, Scopus (Elsevier), and Google Scholar). We adopted an interdisciplinary approach by collecting information from 22 papers published between 2013 and 2024. Based on these data, our survey revealed broad potential, including antimicrobial compounds, antioxidants, antitumor agents, enzymes, and organic acids. We emphasize that accurately identifying and depositing fungal isolates in reference collections are crucial for reliable research and effective industrial applications, driving metabolic bioactivity and the production of substances with the potential to inhibit pathogens. Conserving and protecting the cave environment is imperative, considering its continuous potential for discovery and contribution to scientific advancement.

The diversity of foliar fungal endophyte communities was examined in three economically and ecologically important pine species in Scotland: Scots pine, Corsican pine and lodgepole pine. Two plantation sites comprising all three species were selected in climatically contrasting parts of Scotland and were sampled in late spring by collecting healthy needles from two age classes. Surface sterilisation was carried out before obtaining cultures of fungal isolates, and representatives of common sterile morphotypes were sequenced to determine taxonomic placement. Overall relative proportions of the dominant taxa across sites, tree species and needle age classes were as follows: Anthostomella spp. (52%), Lophodermium seditiosum (17%) and Desmazierella acicola (7%). Many other less frequent taxa were recovered. The results agreed with previous endophyte studies in that the combined effects of site and tree species produced unique endophytic fungal assemblages. Phylogenetic analyses revealed potential sub-species variation associated with site in Anthostomella pinea. Our findings point to the potential naturalisation of European fungal endophytic species (e.g., Anthostomella spp.) in Scottish pine plantations, particularly in association with Corsican pine.