Ecosystem carbon dynamics are governed by complex temporal dependencies and environmental interactions, yet these processes remain poorly understood and quantified across diverse biomes. Here, we developed an explainable LSTM-Attention framework that integrates LSTM networks, attention mechanisms, and gradient-based attribution methods to reveal temporal dependencies in ecosystem carbon flux responses by analyzing eddy covariance flux measurements from 71 sites spanning eight North American biomes. Using this approach, we identified three distinct temporal memory patterns governing carbon flux responses. Grasslands exhibit short-term memory dominance with exponentially increasing temporal contributions from distant to recent past. Deciduous broadleaf forests and wetlands show long-term memory dominance, with deciduous broadleaf forests displaying the strongest historical dependence (attribution values declining from 0.30 at 6 months to 0.045 at 1 month). Croplands and evergreen needleleaf forests demonstrate U-shaped dual memory patterns. Building on these temporal patterns, we identified biome-specific environmental drivers operating within each memory framework: wetlands primarily controlled by soil moisture, evergreen needleleaf forests by radiation, and closed shrublands by vapor pressure deficit. Beyond individual drivers, we uncovered critical nonlinear interactions that diverged from linear correlations at most sites (55 of 71 with ρ < 0.5). For instance, the carbon sink capacity of deciduous broadleaf forests depends on synchronized canopy development and photosynthetic activity, while closed shrublands show strong suppression of carbon uptake by atmospheric water deficit regardless of vegetation greenness, revealing how multiple drivers jointly regulate ecosystem functioning. Validating memory's fundamental role, ablation experiments confirmed that removing memory mechanisms degraded model prediction performance and altered environmental driver identification (Kendall's Tau < 0.5), demonstrating that temporal memory is integral to accurately modeling ecosystem carbon flux responses to environmental drivers. These findings provide mechanistic insights into temporal controls of carbon exchange across different biomes. This knowledge is critical for improving terrestrial carbon-climate feedback representations under global change.
{"title":"Temporal Memory Mechanisms and Biome-Specific Drivers of Ecosystem Carbon Flux: Insights From Explainable Deep Learning Modeling.","authors":"Teng Ma, Wei He, Shuangxi Fang, Jingfeng Xiao, Ngoc Tu Nguyen, Hua Yang, Peipei Xu, Chengcheng Huang, Mengyao Zhao, Shuai Liu, Xinhui Lei, Ziyi Huang","doi":"10.1111/gcb.70722","DOIUrl":"https://doi.org/10.1111/gcb.70722","url":null,"abstract":"<p><p>Ecosystem carbon dynamics are governed by complex temporal dependencies and environmental interactions, yet these processes remain poorly understood and quantified across diverse biomes. Here, we developed an explainable LSTM-Attention framework that integrates LSTM networks, attention mechanisms, and gradient-based attribution methods to reveal temporal dependencies in ecosystem carbon flux responses by analyzing eddy covariance flux measurements from 71 sites spanning eight North American biomes. Using this approach, we identified three distinct temporal memory patterns governing carbon flux responses. Grasslands exhibit short-term memory dominance with exponentially increasing temporal contributions from distant to recent past. Deciduous broadleaf forests and wetlands show long-term memory dominance, with deciduous broadleaf forests displaying the strongest historical dependence (attribution values declining from 0.30 at 6 months to 0.045 at 1 month). Croplands and evergreen needleleaf forests demonstrate U-shaped dual memory patterns. Building on these temporal patterns, we identified biome-specific environmental drivers operating within each memory framework: wetlands primarily controlled by soil moisture, evergreen needleleaf forests by radiation, and closed shrublands by vapor pressure deficit. Beyond individual drivers, we uncovered critical nonlinear interactions that diverged from linear correlations at most sites (55 of 71 with ρ < 0.5). For instance, the carbon sink capacity of deciduous broadleaf forests depends on synchronized canopy development and photosynthetic activity, while closed shrublands show strong suppression of carbon uptake by atmospheric water deficit regardless of vegetation greenness, revealing how multiple drivers jointly regulate ecosystem functioning. Validating memory's fundamental role, ablation experiments confirmed that removing memory mechanisms degraded model prediction performance and altered environmental driver identification (Kendall's Tau < 0.5), demonstrating that temporal memory is integral to accurately modeling ecosystem carbon flux responses to environmental drivers. These findings provide mechanistic insights into temporal controls of carbon exchange across different biomes. This knowledge is critical for improving terrestrial carbon-climate feedback representations under global change.</p>","PeriodicalId":175,"journal":{"name":"Global Change Biology","volume":"32 1","pages":"e70722"},"PeriodicalIF":12.0,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146049799","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Wing Yan Chan, Talisa Doering, Luka Meyers, Justin Maire, Cecilie R Gøtze, Rumi Sakamoto, Madeleine J H van Oppen
The symbioses between corals and microorganisms, including the endosymbiotic dinoflagellates (family Symbiodiniaceae) and bacteria, are central to coral health and functioning. Certain species of Symbiodiniaceae in the genus Durusdinium are known to confer enhanced thermotolerance to corals and could therefore be beneficial under global climate change. However, association with thermotolerant algal symbionts may come with trade-offs that affect long-term coral persistence, and this study reports on one potentially consequential trade-off. We exposed colonies of the coral Galaxea fascicularis hosting Symbiodiniaceae in the genus Cladocopium (C-corals) or Durusdinium (D-corals) to elevated temperature equivalent to ~9.5 degree heating weeks. While C-corals were heat-sensitive, as evidenced by reduced Symbiodiniaceae cell density, photochemical efficiency and tissue pigmentation, they were resilient to tissue loss, maintained a stable bacterial community under elevated temperature, and showed limited mortality (12.5%) at the end of the 15-week recovery. Conversely, D-corals showed limited Symbiodiniaceae photodamage or tissue pigmentation loss under elevated temperature and initially demonstrated heat resilience. However, D-corals exhibited tissue loss and a significant reduction in newly formed polyps under elevated temperature, which occurred in parallel with a shift in their bacterial community composition toward taxa linked to bleaching, disease or algal overgrowth (e.g., Sphingomonas). Most D-corals died at the end of the recovery period. The intracellular bacterial communities in Cladocopium and Durusdinium freshly isolated from the experimental corals revealed symbiont-specific patterns, where Durusdinium showed strong affiliation with the diazotroph Ruegeria sp. Our findings show that G. fascicularis associating with the thermally tolerant Durusdinium may have higher susceptibility to tissue loss relative to corals with Cladocopium symbionts. If this trade-off occurs across corals that can associate with both Cladocopium and Durusdinium, it can have profound implications for reef persistence under global climate change, and further study is critical to inform conservation strategies aiming to build resilient reefs.
{"title":"Potential Trade-Off Between Temperature and Tissue Loss Resistance in Corals Associating With Algal Symbionts in the Genus Durusdinium.","authors":"Wing Yan Chan, Talisa Doering, Luka Meyers, Justin Maire, Cecilie R Gøtze, Rumi Sakamoto, Madeleine J H van Oppen","doi":"10.1111/gcb.70641","DOIUrl":"https://doi.org/10.1111/gcb.70641","url":null,"abstract":"<p><p>The symbioses between corals and microorganisms, including the endosymbiotic dinoflagellates (family Symbiodiniaceae) and bacteria, are central to coral health and functioning. Certain species of Symbiodiniaceae in the genus Durusdinium are known to confer enhanced thermotolerance to corals and could therefore be beneficial under global climate change. However, association with thermotolerant algal symbionts may come with trade-offs that affect long-term coral persistence, and this study reports on one potentially consequential trade-off. We exposed colonies of the coral Galaxea fascicularis hosting Symbiodiniaceae in the genus Cladocopium (C-corals) or Durusdinium (D-corals) to elevated temperature equivalent to ~9.5 degree heating weeks. While C-corals were heat-sensitive, as evidenced by reduced Symbiodiniaceae cell density, photochemical efficiency and tissue pigmentation, they were resilient to tissue loss, maintained a stable bacterial community under elevated temperature, and showed limited mortality (12.5%) at the end of the 15-week recovery. Conversely, D-corals showed limited Symbiodiniaceae photodamage or tissue pigmentation loss under elevated temperature and initially demonstrated heat resilience. However, D-corals exhibited tissue loss and a significant reduction in newly formed polyps under elevated temperature, which occurred in parallel with a shift in their bacterial community composition toward taxa linked to bleaching, disease or algal overgrowth (e.g., Sphingomonas). Most D-corals died at the end of the recovery period. The intracellular bacterial communities in Cladocopium and Durusdinium freshly isolated from the experimental corals revealed symbiont-specific patterns, where Durusdinium showed strong affiliation with the diazotroph Ruegeria sp. Our findings show that G. fascicularis associating with the thermally tolerant Durusdinium may have higher susceptibility to tissue loss relative to corals with Cladocopium symbionts. If this trade-off occurs across corals that can associate with both Cladocopium and Durusdinium, it can have profound implications for reef persistence under global climate change, and further study is critical to inform conservation strategies aiming to build resilient reefs.</p>","PeriodicalId":175,"journal":{"name":"Global Change Biology","volume":"32 1","pages":"e70641"},"PeriodicalIF":12.0,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146058199","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Giovanny Pérez, Simon C Mills, Jacob B Socolar, Jose M Ochoa Quintero, Robert P Freckleton, Torbjørn Haugaasen, James J Gilroy, David P Edwards
Forest conversion for agriculture is a major cause of tropical biodiversity loss, but its impacts vary with spatial scale. Higher species turnover in forests than in farmland means that land-use change causes greater biodiversity loss at broader than at local scales, yet broad-scale assessments are scarce. Phylogenetic diversity is increasingly prioritised in conservation to protect evolutionary history under global change, yet how deforestation-driven changes in phylogenetic diversity scale spatially and accumulate in regions of high species turnover remains unclear. We compiled a large field database from across 13 biogeographically diverse regions affected by deforestation for cattle farming, covering most of Colombia, a megadiverse tropical country. Using occupancy models, we estimated bird communities for 1547 (936 observed plus 611 never-observed) species across ecoregions and nationally in both forest and pasture habitats to quantify changes in phylogenetic diversity metrics and determine whether these impacts are dependent on spatial scale. We found an average loss of 2300 Myr of phylogenetic diversity at the country scale, with most species negatively affected across the phylogeny. Although single regional-scale relative loss was on average comparable to broader scales, there was high variability between regional units. The latter was especially critical when evaluating metrics of evolutionary distinctiveness, which are key indicators for biodiversity conservation planning. Such underestimation of national-scale impacts highlights the importance of sampling across multiple regions. Immediate conservation action is needed to safeguard evolutionarily unique species and prevent phylogenetic homogenisation driven by agricultural expansion across spatial scales-a threat often underestimated due to assessments limited to single biogeographic regions.
{"title":"Strong Variation in Land-Use Change Impacts on Tropical Avian Phylogenetic Diversity Between Ecoregions Highlights the Need to Sample Large Spatial Scales.","authors":"Giovanny Pérez, Simon C Mills, Jacob B Socolar, Jose M Ochoa Quintero, Robert P Freckleton, Torbjørn Haugaasen, James J Gilroy, David P Edwards","doi":"10.1111/gcb.70702","DOIUrl":"https://doi.org/10.1111/gcb.70702","url":null,"abstract":"<p><p>Forest conversion for agriculture is a major cause of tropical biodiversity loss, but its impacts vary with spatial scale. Higher species turnover in forests than in farmland means that land-use change causes greater biodiversity loss at broader than at local scales, yet broad-scale assessments are scarce. Phylogenetic diversity is increasingly prioritised in conservation to protect evolutionary history under global change, yet how deforestation-driven changes in phylogenetic diversity scale spatially and accumulate in regions of high species turnover remains unclear. We compiled a large field database from across 13 biogeographically diverse regions affected by deforestation for cattle farming, covering most of Colombia, a megadiverse tropical country. Using occupancy models, we estimated bird communities for 1547 (936 observed plus 611 never-observed) species across ecoregions and nationally in both forest and pasture habitats to quantify changes in phylogenetic diversity metrics and determine whether these impacts are dependent on spatial scale. We found an average loss of 2300 Myr of phylogenetic diversity at the country scale, with most species negatively affected across the phylogeny. Although single regional-scale relative loss was on average comparable to broader scales, there was high variability between regional units. The latter was especially critical when evaluating metrics of evolutionary distinctiveness, which are key indicators for biodiversity conservation planning. Such underestimation of national-scale impacts highlights the importance of sampling across multiple regions. Immediate conservation action is needed to safeguard evolutionarily unique species and prevent phylogenetic homogenisation driven by agricultural expansion across spatial scales-a threat often underestimated due to assessments limited to single biogeographic regions.</p>","PeriodicalId":175,"journal":{"name":"Global Change Biology","volume":"32 1","pages":"e70702"},"PeriodicalIF":12.0,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146058224","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}