Pub Date : 2025-03-21DOI: 10.1038/s41556-025-01620-1
Felix Lange, Michael Ratz, Jan-Niklas Dohrke, Maxence Le Vasseur, Dirk Wenzel, Peter Ilgen, Dietmar Riedel, Stefan Jakobs
Prohibitins are a highly conserved family of proteins that have been implicated in a variety of functions including mitochondrial stress signalling and housekeeping, cell cycle progression, apoptosis, lifespan regulation and many others. The human prohibitins prohibitin 1 and prohibitin 2 have been proposed to act as scaffolds within the mitochondrial inner membrane, but their molecular organization has remained elusive. Here we determined the molecular organization of the human prohibitin complex within the mitochondrial inner membrane using an integrative structural biology approach combining quantitative western blotting, cryo-electron tomography, subtomogram averaging and molecular modelling. The proposed bell-shaped structure consists of 11 alternating prohibitin 1 and prohibitin 2 molecules. This study reveals an average of about 43 prohibitin complexes per crista, covering 1–3% of the crista membrane area. These findings provide a structural basis for understanding the functional contributions of prohibitins to the integrity and spatial organization of the mitochondrial inner membrane.
{"title":"In situ architecture of the human prohibitin complex","authors":"Felix Lange, Michael Ratz, Jan-Niklas Dohrke, Maxence Le Vasseur, Dirk Wenzel, Peter Ilgen, Dietmar Riedel, Stefan Jakobs","doi":"10.1038/s41556-025-01620-1","DOIUrl":"https://doi.org/10.1038/s41556-025-01620-1","url":null,"abstract":"<p>Prohibitins are a highly conserved family of proteins that have been implicated in a variety of functions including mitochondrial stress signalling and housekeeping, cell cycle progression, apoptosis, lifespan regulation and many others. The human prohibitins prohibitin 1 and prohibitin 2 have been proposed to act as scaffolds within the mitochondrial inner membrane, but their molecular organization has remained elusive. Here we determined the molecular organization of the human prohibitin complex within the mitochondrial inner membrane using an integrative structural biology approach combining quantitative western blotting, cryo-electron tomography, subtomogram averaging and molecular modelling. The proposed bell-shaped structure consists of 11 alternating prohibitin 1 and prohibitin 2 molecules. This study reveals an average of about 43 prohibitin complexes per crista, covering 1–3% of the crista membrane area. These findings provide a structural basis for understanding the functional contributions of prohibitins to the integrity and spatial organization of the mitochondrial inner membrane.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"6 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143666290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-21DOI: 10.1038/s41556-025-01640-x
Graeme I. Lancaster, Andrew J. Murphy
Ferroptosis is a form of cell death that occurs in many pathological conditions and is a target for cancer therapy. The enzyme GPX4 is the primary means by which cells guard against ferroptosis. A study now demonstrates that methylation of GPX4 promotes its stabilization, and that preventing GPX4 methylation improves cancer therapy.
{"title":"GPX4 methylation puts a brake on ferroptosis","authors":"Graeme I. Lancaster, Andrew J. Murphy","doi":"10.1038/s41556-025-01640-x","DOIUrl":"https://doi.org/10.1038/s41556-025-01640-x","url":null,"abstract":"Ferroptosis is a form of cell death that occurs in many pathological conditions and is a target for cancer therapy. The enzyme GPX4 is the primary means by which cells guard against ferroptosis. A study now demonstrates that methylation of GPX4 promotes its stabilization, and that preventing GPX4 methylation improves cancer therapy.","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"14 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-03-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143666291","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-20DOI: 10.1038/s41556-025-01636-7
Joanna R. Kovalski, Davide Ruggero
Translational control is emerging as a key regulator of cancer. The RNA-binding protein PABPC1 is shown to drive chronic myeloid leukaemia (CML) by enhancing the translation of pro-oncogenic mRNAs through the formation of biomolecular condensates. Small molecules that target PABPC1 show promise in treating therapy-resistant CML.
{"title":"Breaking up translation condensates in cancer","authors":"Joanna R. Kovalski, Davide Ruggero","doi":"10.1038/s41556-025-01636-7","DOIUrl":"https://doi.org/10.1038/s41556-025-01636-7","url":null,"abstract":"Translational control is emerging as a key regulator of cancer. The RNA-binding protein PABPC1 is shown to drive chronic myeloid leukaemia (CML) by enhancing the translation of pro-oncogenic mRNAs through the formation of biomolecular condensates. Small molecules that target PABPC1 show promise in treating therapy-resistant CML.","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"9 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143660366","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-18DOI: 10.1038/s41556-024-01607-4
Chenguang Sun, Xi Xu, Zhongyang Chen, Fanqi Zhou, Wen Wang, Junzhu Chen, Mengyao Sun, Fang Wang, Linjia Jiang, Ming Ji, Siqi Liu, Jiayue Xu, Manman He, Bowei Su, Xiaoling Liu, Yingdai Gao, Hui Wei, Jian Li, Xiaoshuang Wang, Meng Zhao, Jia Yu, Yanni Ma
Tyrosine kinase inhibitors (TKIs) targeting the BCR-ABL1 fusion tyrosine kinase have revolutionized the treatment of chronic myeloid leukaemia (CML). However, the development of TKI resistance and the subsequent transition from the chronic phase (CP) to blast crisis (BC) threaten patients with CML. Accumulating evidence suggests that translational control is crucial for cancer progression. Our high-throughput CRISPR–Cas9 screening identified poly(A) binding protein cytoplasmic 1 (PABPC1) as a driver for CML progression in the BC stage. PABPC1 preferentially improved the translation efficiency of multiple leukaemogenic mRNAs with long and highly structured 5′ untranslated regions by forming biomolecular condensates. Inhibiting PABPC1 significantly suppressed CML cell proliferation and attenuated disease progression, with minimal effects on normal haematopoiesis. Moreover, we identified two PABPC1 inhibitors that inhibited BC progression and overcame TKI resistance in murine and human CML. Overall, our work identifies PABPC1 as a selective translation enhancing factor in CML-BC, with its genetic or pharmacological inhibition overcoming TKI resistance and suppressed BC progression.
{"title":"Selective translational control by PABPC1 phase separation regulates blast crisis and therapy resistance in chronic myeloid leukaemia","authors":"Chenguang Sun, Xi Xu, Zhongyang Chen, Fanqi Zhou, Wen Wang, Junzhu Chen, Mengyao Sun, Fang Wang, Linjia Jiang, Ming Ji, Siqi Liu, Jiayue Xu, Manman He, Bowei Su, Xiaoling Liu, Yingdai Gao, Hui Wei, Jian Li, Xiaoshuang Wang, Meng Zhao, Jia Yu, Yanni Ma","doi":"10.1038/s41556-024-01607-4","DOIUrl":"https://doi.org/10.1038/s41556-024-01607-4","url":null,"abstract":"<p>Tyrosine kinase inhibitors (TKIs) targeting the BCR-ABL1 fusion tyrosine kinase have revolutionized the treatment of chronic myeloid leukaemia (CML). However, the development of TKI resistance and the subsequent transition from the chronic phase (CP) to blast crisis (BC) threaten patients with CML. Accumulating evidence suggests that translational control is crucial for cancer progression. Our high-throughput CRISPR–Cas9 screening identified poly(A) binding protein cytoplasmic 1 (PABPC1) as a driver for CML progression in the BC stage. PABPC1 preferentially improved the translation efficiency of multiple leukaemogenic mRNAs with long and highly structured 5′ untranslated regions by forming biomolecular condensates. Inhibiting PABPC1 significantly suppressed CML cell proliferation and attenuated disease progression, with minimal effects on normal haematopoiesis. Moreover, we identified two PABPC1 inhibitors that inhibited BC progression and overcame TKI resistance in murine and human CML. Overall, our work identifies PABPC1 as a selective translation enhancing factor in CML-BC, with its genetic or pharmacological inhibition overcoming TKI resistance and suppressed BC progression.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"69 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-03-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143640507","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-14DOI: 10.1038/s41556-025-01644-7
George Andrew S. Inglis
{"title":"Nutrients shape T cell exhaustion","authors":"George Andrew S. Inglis","doi":"10.1038/s41556-025-01644-7","DOIUrl":"10.1038/s41556-025-01644-7","url":null,"abstract":"","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"27 3","pages":"371-371"},"PeriodicalIF":17.3,"publicationDate":"2025-03-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143622773","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-10DOI: 10.1038/s41556-025-01625-w
Yasmine J. Liu, Jonathan Sulc, Johan Auwerx
Mitochondria are multifaceted organelles with crucial roles in energy generation, cellular signalling and a range of synthesis pathways. The study of mitochondrial biology is complicated by its own small genome, which is matrilineally inherited and not subject to recombination, and present in multiple, possibly different, copies. Recent methodological developments have enabled the analysis of mitochondrial DNA (mtDNA) in large-scale cohorts and highlight the far-reaching impact of mitochondrial genetic variation. Genome-editing techniques have been adapted to target mtDNA, further propelling the functional analysis of mitochondrial genes. Mitochondria are finely tuned signalling hubs, a concept that has been expanded by advances in methodologies for studying the function of mitochondrial proteins and protein complexes. Mitochondrial respiratory complexes are of dual genetic origin, requiring close coordination between mitochondrial and nuclear gene-expression systems (transcription and translation) for proper assembly and function, and recent findings highlight the importance of the mitochondria in this bidirectional signalling. Auwerx and colleagues review recent advances in mitochondrial genetics, proteomics and biochemistry that emphasize the far-reaching impact of mitochondrial genetic variation and the role of mitochondria as finely tuned signalling hubs.
{"title":"Mitochondrial genetics, signalling and stress responses","authors":"Yasmine J. Liu, Jonathan Sulc, Johan Auwerx","doi":"10.1038/s41556-025-01625-w","DOIUrl":"10.1038/s41556-025-01625-w","url":null,"abstract":"Mitochondria are multifaceted organelles with crucial roles in energy generation, cellular signalling and a range of synthesis pathways. The study of mitochondrial biology is complicated by its own small genome, which is matrilineally inherited and not subject to recombination, and present in multiple, possibly different, copies. Recent methodological developments have enabled the analysis of mitochondrial DNA (mtDNA) in large-scale cohorts and highlight the far-reaching impact of mitochondrial genetic variation. Genome-editing techniques have been adapted to target mtDNA, further propelling the functional analysis of mitochondrial genes. Mitochondria are finely tuned signalling hubs, a concept that has been expanded by advances in methodologies for studying the function of mitochondrial proteins and protein complexes. Mitochondrial respiratory complexes are of dual genetic origin, requiring close coordination between mitochondrial and nuclear gene-expression systems (transcription and translation) for proper assembly and function, and recent findings highlight the importance of the mitochondria in this bidirectional signalling. Auwerx and colleagues review recent advances in mitochondrial genetics, proteomics and biochemistry that emphasize the far-reaching impact of mitochondrial genetic variation and the role of mitochondria as finely tuned signalling hubs.","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"27 3","pages":"393-407"},"PeriodicalIF":17.3,"publicationDate":"2025-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143582975","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-10DOI: 10.1038/s41556-025-01632-x
Clémentine Villeneuve, Kaitlin P. McCreery, Sara A. Wickström
Tissue deformations are a central feature of development, from early embryogenesis, growth and building the body plan to the establishment of functional organs. These deformations often result from active contractile forces generated by cells and cell collectives, and are mediated by changes in their mechanical properties. Mechanical forces drive the formation of functional organ architectures, but they also coordinate cell behaviour and fate transitions, ensuring robustness of development. Advances in microscopy, genetics and chemistry have enabled increasingly powerful tools for measuring, generating and perturbing mechanical forces. Here we discuss approaches to measure and manipulate mechanical forces with a focus on developmental processes, ranging from quantification of molecular interactions to mapping the mechanical properties of tissues. We focus on contemporary methods, and discuss the biological discoveries that these approaches have enabled. We conclude with an outlook to methodologies at the interface of physics, chemistry and biology to build an integrated understanding of tissue morphodynamics.
{"title":"Measuring and manipulating mechanical forces during development","authors":"Clémentine Villeneuve, Kaitlin P. McCreery, Sara A. Wickström","doi":"10.1038/s41556-025-01632-x","DOIUrl":"https://doi.org/10.1038/s41556-025-01632-x","url":null,"abstract":"<p>Tissue deformations are a central feature of development, from early embryogenesis, growth and building the body plan to the establishment of functional organs. These deformations often result from active contractile forces generated by cells and cell collectives, and are mediated by changes in their mechanical properties. Mechanical forces drive the formation of functional organ architectures, but they also coordinate cell behaviour and fate transitions, ensuring robustness of development. Advances in microscopy, genetics and chemistry have enabled increasingly powerful tools for measuring, generating and perturbing mechanical forces. Here we discuss approaches to measure and manipulate mechanical forces with a focus on developmental processes, ranging from quantification of molecular interactions to mapping the mechanical properties of tissues. We focus on contemporary methods, and discuss the biological discoveries that these approaches have enabled. We conclude with an outlook to methodologies at the interface of physics, chemistry and biology to build an integrated understanding of tissue morphodynamics.</p>","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"15 1","pages":""},"PeriodicalIF":21.3,"publicationDate":"2025-03-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143582974","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-05DOI: 10.1038/s41556-025-01629-6
The existence of an endoplasmic reticulum (ER)–Golgi intermediate compartment (ERGIC) in plant cells has long been debated. In our study we identified a dynamic Golgi-independent tubular network that transports ER-derived cargos and interacts with pre-existing Golgi to mature into new pre-Golgi cisternae in a lipid-dependent manner.
{"title":"Unravelling the endoplasmic reticulum–Golgi intermediate compartment in plant cells","authors":"","doi":"10.1038/s41556-025-01629-6","DOIUrl":"10.1038/s41556-025-01629-6","url":null,"abstract":"The existence of an endoplasmic reticulum (ER)–Golgi intermediate compartment (ERGIC) in plant cells has long been debated. In our study we identified a dynamic Golgi-independent tubular network that transports ER-derived cargos and interacts with pre-existing Golgi to mature into new pre-Golgi cisternae in a lipid-dependent manner.","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"27 3","pages":"382-383"},"PeriodicalIF":17.3,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143545836","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-03-04DOI: 10.1038/s41556-025-01615-y
David A. Calderwood, Derek Toomre
Cell surface acidification has key roles in both cell migration and bone resorption. A study now identifies a pathway whereby growth factor signalling induces local acidification, driving sialic acid removal and galectin-3-mediated integrin internalization.
{"title":"Sugar unmasking for trafficking","authors":"David A. Calderwood, Derek Toomre","doi":"10.1038/s41556-025-01615-y","DOIUrl":"10.1038/s41556-025-01615-y","url":null,"abstract":"Cell surface acidification has key roles in both cell migration and bone resorption. A study now identifies a pathway whereby growth factor signalling induces local acidification, driving sialic acid removal and galectin-3-mediated integrin internalization.","PeriodicalId":18977,"journal":{"name":"Nature Cell Biology","volume":"27 3","pages":"375-376"},"PeriodicalIF":17.3,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143538708","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}