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Prevalence and risk factors of antimicrobial resistance in Staphylococcus spp. and Escherichia coli in fruit bats at high-risk human-wildlife interfaces in Bangladesh 孟加拉国高危人类与野生动物交界处果蝠中葡萄球菌和大肠杆菌的耐药性流行情况及危险因素
IF 4.5 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-18 DOI: 10.1016/j.onehlt.2025.101300
Md Helal Uddin , Shariful Islam , Pronesh Dutta , Monjurul Islam , Md. Kaisar Rahman , Muhammad Sazzad Hossain , Md Shahjalal Sagor , Md. Aftabuddin Rumi , Meerjady Sabrina Flora , Jade K. Forwood , Mohammed Abdus Samad , Jonathan H. Epstein , Sharmin Chowdhury , Ariful Islam
Antimicrobial resistant (AMR) bacteria are frequently detected in wildlife and are often considered an indicator of anthropogenic pathogen exposure to wildlife. However, the role of bats in AMR dissemination remains poorly understood. We conducted a cross-sectional study to investigate the prevalence and risk factors associated with AMR patterns in Staphylococcus spp. and Escherichia coli isolated from frugivorous bats in Bangladesh. We collected 369 noninvasive fecal samples from Pteropus medius and Rousettus leschenaultii individual bats. Bacterial isolation was performed using selective media, biochemical tests and performed polymerase chain reaction (PCR) for confirmation of Staphylococcus spp. and E. coli. Antimicrobial susceptibility testing for antimicrobials was conducted using the Kirby-Bauer disc diffusion technique. The prevalence of E. coli and Staphylococcus spp. was 29.8 % and 28.5 % respectively. Overall, 28.2 % of E. coli and 26.3 % of Staphylococcus spp. exhibited resistance to at least one antimicrobial. Logistic regression analysis revealed that resistant Staphylococcus spp. colonisation was significantly higher in rural areas (OR = 2.6) and in R. leschenaultii species (OR = 2.6), while resistant E. coli was higher in urban areas (OR = 2.0) and in P. medius bat (OR = 1.7). Staphylococcus spp. showed the highest resistance to ampicillin (56 %), followed by clindamycin (23 %). On the other hand, E. coli showed the highest resistance against cefepime (16 %) followed by ampicillin (13 %). While the source of AMR bacteria in bats remains unclear, bat drinking habits on the contaminated water bodies with people and domestic animals might be source of resistant bacteria to bats. Future One Health research is recommended to understand the ecology of AMR and role of bats in the transmission of resistant bacteria across ecosystems.
抗微生物药物耐药性(AMR)细菌经常在野生动物中检测到,通常被认为是人类病原体暴露于野生动物的指标。然而,蝙蝠在抗菌素耐药性传播中的作用仍然知之甚少。我们进行了一项横断面研究,以调查从孟加拉国食果蝙蝠中分离的葡萄球菌和大肠杆菌中与AMR模式相关的流行率和危险因素。我们收集了369份中翼蝠和leschenaultii蝙蝠的非侵入性粪便样本。采用选择性培养基、生化试验和聚合酶链反应(PCR)进行细菌分离,以确定葡萄球菌和大肠杆菌。采用Kirby-Bauer圆盘扩散技术进行抗菌药物的药敏试验。大肠杆菌和葡萄球菌感染率分别为29.8%和28.5%。总体而言,28.2%的大肠杆菌和26.3%的葡萄球菌对至少一种抗菌素具有耐药性。Logistic回归分析显示,农村地区(OR = 2.6)和leschenauli种(OR = 2.6)的耐药葡萄球菌定植量显著高于城市地区(OR = 2.0)和P. medium bat (OR = 1.7)的耐药大肠杆菌定植量显著高于城市地区(OR = 2.0)。葡萄球菌对氨苄西林的耐药性最高(56%),其次是克林霉素(23%)。另一方面,大肠杆菌对头孢吡肟的耐药性最高(16%),其次是氨苄西林(13%)。虽然蝙蝠AMR细菌的来源尚不清楚,但蝙蝠与人和家畜一起在受污染的水体上饮水的习惯可能是蝙蝠耐药细菌的来源。建议未来的One Health研究以了解抗菌素耐药性的生态学以及蝙蝠在跨生态系统传播耐药细菌中的作用。
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引用次数: 0
Genomic epidemiology of Salmonella Typhimurium and its monophasic variants in Southern China: A spatiotemporal and source attribution analysis 华南鼠伤寒沙门菌及其单相变异的基因组流行病学:时空和来源归因分析
IF 4.5 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-15 DOI: 10.1016/j.onehlt.2025.101299
Ningbo Liao , Shunxiong Lei , Chengwei Liu , Shengnan Tang , Silu Peng
Salmonella Typhimurium and its monophasic variants are major contributors to foodborne illnesses globally, with zoonotic transmission posing significant public health risks. In southern China, persistent salmonellosis cases linked to poultry and pork highlight the need for advanced genomic tools to trace contamination sources and understand transmission dynamics. This study integrates whole-genome sequencing (WGS) and spatiotemporal data to investigate the molecular epidemiology of Salmonella in Jiangxi Province, a region with high incidence of foodborne salmonellosis. Analysis of 206 Salmonella isolates (2015–2021) revealed dominant sequence types (ST34, ST19, ST155, and ST469) associated with human clinical cases and food sources. High-resolution single nucleotide polymorphism (SNP) phylogenetic analysis revealed well-supported, monophasic clades corresponding to the major sequence types. This analysis provided strong genomic evidence for zoonotic transmission, with human clinical isolates being genetically almost identical (≤5 SNPs) to isolates from poultry (ST34/ST19) and pork (ST155/ST469) sources. Clonal clusters of monophasic Typhimurium variants (77.9 % of ST34 isolates) exhibited widespread geographic distribution across 11 prefectures, and the high genetic similarity among isolates suggests potential cross-regional transmission through contaminated food supply chains. High antimicrobial resistance (AMR) rates were detected against ampicillin (68.0 %), tetracycline (61.0 %), and sulfamethoxazole-trimethoprim (54.0 %), with multidrug-resistant (MDR) strains (60.2 %) prevalent in clinical and food-derived isolates. ST34 exhibited the highest MDR prevalence (75.4 %), driven by the presence of Salmonella Genomic Island 1 (SGI1) in many isolates. The β-lactamase gene blaTEM-1 was most prevalent (60.7 %), followed by tet(A) (54.4 %), and sul2 (47.6 %). Point mutations in the quinolone resistance-determining region (QRDR), specifically in gyrA, were identified as the primary mechanism for ciprofloxacin resistance. Spatial clustering identified significant clusters in live poultry markets, slaughterhouses, and retail meat, emphasizing the role of foodborne zoonotic reservoirs. Findings advocate for strengthened One Health interventions, including enhanced AMR monitoring, targeted food safety regulations, and real-time WGS-based surveillance to mitigate zoonotic transmission risks in southern China.
鼠伤寒沙门氏菌及其单相变种是全球食源性疾病的主要来源,人畜共患传播构成重大公共卫生风险。在中国南方,与家禽和猪肉有关的沙门氏菌病病例持续存在,这突出表明需要先进的基因组工具来追踪污染源并了解传播动态。本研究结合全基因组测序(WGS)和时空数据,对食源性沙门氏菌病高发地区江西省沙门氏菌的分子流行病学进行研究。分析2015-2021年206株沙门氏菌分离株,发现与人类临床病例和食物来源相关的优势序列类型(ST34、ST19、ST155和ST469)。高分辨率单核苷酸多态性(SNP)系统发育分析显示了与主要序列类型相对应的良好支持的单相分支。该分析为人畜共患病传播提供了强有力的基因组证据,人类临床分离株与家禽(ST34/ST19)和猪肉(ST155/ST469)源分离株在遗传上几乎相同(≤5个snp)。单相鼠伤寒菌变异的克隆群(占ST34分离株的77.9%)在11个县具有广泛的地理分布,分离株之间的高度遗传相似性表明可能通过受污染的食品供应链进行跨区域传播。对氨苄西林(68.0%)、四环素(61.0%)和磺胺甲氧唑-甲氧苄啶(54.0%)的耐药率较高,临床和食源性分离株中普遍存在多重耐药菌株(60.2%)。由于在许多分离株中存在沙门氏菌基因组岛1 (SGI1), ST34的耐多药患病率最高(75.4%)。β-内酰胺酶基因blatem1最为常见(60.7%),其次是tet(A)(54.4%)和sul2(47.6%)。喹诺酮类药物耐药决定区(QRDR)的点突变,特别是gyrA,被确定为环丙沙星耐药的主要机制。空间聚类确定了活禽市场、屠宰场和零售肉类中的显著聚集,强调了食源性人畜共患病宿主的作用。研究结果主张加强“同一个健康”干预措施,包括加强抗菌素耐药性监测、有针对性的食品安全法规和基于wgs的实时监测,以减轻中国南方人畜共患病传播风险。
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引用次数: 0
Genetic insights into hepatitis E virus through environmental surveillance in Europe 通过欧洲环境监测了解戊型肝炎病毒的基因
IF 4.5 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-15 DOI: 10.1016/j.onehlt.2025.101302
Hao Wang , Marianela Patzi-Churqui , Linn Dahlsten Andius , Kristina Nyström , Martin Lagging
Zoonotic hepatitis E has been a growing public health concern in Europe, but the transmission of its causative agent, hepatitis E virus (HEV), remains incompletely understood. Environmental surveillance, particularly through wastewater monitoring, has proven valuable for tracking viral circulation and variant shift during the COVID-19 pandemic, yet its application to HEV is still limited. In this review, we systematically analyzed HEV sequences across Europe, focusing on environmental sources from a genetic perspective. Of more than 13,100 HEV sequences deposited in the NCBI database, only 2.4 % (316/13,118) originated from environmental samples, including wastewater, surface water, and biosolids. Additional typing data from the literature revealed highly uneven geographic distribution, with 97 % of environmental sequences reported from Italy, France, the United Kingdom (UK), Spain, Sweden, and Germany. HEV-3 was the dominant genotype, while HEV-1 and HEV-4 were occasionally detected. Subtypes 3c and 3f were most common, but their prevalence varied across countries and sample types. Some countries, such as France, Sweden, and the UK, exhibited divergent subtype patterns between humans, animals, and environmental sources, whereas others, such as Spain and Germany, showed more consistent distributions. These findings highlight the importance of integrating clinical, veterinary, and environmental surveillance to better understand HEV transmission in Europe under a One Health framework. However, the scarcity of environmental data, technical challenges in sequencing, and lack of standardized protocols limit comprehensive assessment of HEV circulation. Expanding sequencing efforts, improving detection methods, and coordinating international surveillance frameworks will be critical to strengthen HEV monitoring and preparedness against emerging HEV threats.
人畜共患戊型肝炎在欧洲已成为一个日益严重的公共卫生问题,但其病原体戊型肝炎病毒(HEV)的传播仍不完全清楚。环境监测,特别是通过废水监测,已被证明对跟踪COVID-19大流行期间的病毒循环和变异转移有价值,但其在HEV中的应用仍然有限。在这篇综述中,我们系统地分析了欧洲各地的HEV序列,重点从遗传角度分析了环境来源。在NCBI数据库中存储的13,100多个HEV序列中,只有2.4%(316/13,118)来自环境样本,包括废水、地表水和生物固体。来自文献的其他分型数据显示地理分布极不均匀,97%的环境序列来自意大利、法国、英国、西班牙、瑞典和德国。HEV-3为优势基因型,HEV-1和HEV-4偶见。亚型3c和3f最常见,但其患病率因国家和样本类型而异。一些国家,如法国、瑞典和英国,在人类、动物和环境来源之间表现出不同的亚型模式,而其他国家,如西班牙和德国,则表现出更一致的分布。这些发现强调了整合临床、兽医和环境监测以更好地了解同一健康框架下欧洲HEV传播的重要性。然而,缺乏环境数据、测序方面的技术挑战以及缺乏标准化方案限制了对HEV传播的全面评估。扩大测序工作、改进检测方法和协调国际监测框架对于加强HEV监测和防范新出现的HEV威胁至关重要。
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引用次数: 0
Collaboration under pressure: sustaining One Health research teams in a post-COVID environment 压力下的协作:在后covid环境中维持One Health研究团队
IF 4.5 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-12 DOI: 10.1016/j.onehlt.2025.101298
Robin B. Gasser
The sustainability of contemporary One Health research increasingly relies on the capacity of universities, research institutes and partner organisations to support collaborative teams. Such teams are indispensable because they integrate diverse expertise, address complex problems and respond rapidly to health crises such as COVID-19. One Health provides a compelling exemplar of collaborative research, uniting human, animal and environmental health to tackle global challenges and emerging infectious diseases. Yet the resilience of such teams is being tested by neoliberal reforms that have reshaped higher education into a competitive marketplace and by managerial practices that prioritise measurable outputs over collegiality, autonomy and disciplinary breadth. The pandemic exposed the fragility of this model: laboratories closed, workloads intensified and financial pressures triggered redundancies, even as collaboration proved essential to global health responses. This Opinion article examines how systemic pressures and interpersonal dynamics intersect to influence the functioning of research teams in a post-COVID environment. It highlights funding precarity, employment insecurity, inequities and political instability as persistent challenges, and explores how performance pressures and competition can affect collaboration. Sustaining research teams requires institutional reforms, inclusive leadership, recognition of diverse contributions and alignment with global frameworks such as the United Nations Sustainable Development Goals (SDGs), so that One Health research and other multidisciplinary endeavours addressing emerging and neglected diseases remain resilient, impactful and socially relevant.
当代“一体健康”研究的可持续性越来越依赖于大学、研究机构和伙伴组织支持合作团队的能力。这样的团队不可或缺,因为他们整合了不同的专业知识,解决复杂的问题,并迅速应对COVID-19等卫生危机。“同一个健康”提供了一个令人信服的合作研究范例,将人类、动物和环境卫生结合起来,以应对全球挑战和新出现的传染病。然而,这些团队的韧性正受到新自由主义改革的考验,新自由主义改革将高等教育重塑为一个竞争激烈的市场,而管理实践则将可衡量的产出置于合作、自治和学科广度之上。这次大流行暴露了这一模式的脆弱性:实验室关闭,工作量增加,财政压力引发裁员,尽管事实证明合作对全球卫生应对至关重要。这篇意见文章探讨了系统压力和人际动态如何相互影响,影响后covid环境下研究团队的运作。它强调了资金不稳定、就业不安全、不平等和政治不稳定是持续的挑战,并探讨了绩效压力和竞争如何影响合作。维持研究团队需要机构改革、包容性领导、承认不同贡献并与联合国可持续发展目标(SDGs)等全球框架保持一致,以便“同一个健康”研究和其他多学科努力应对新出现的和被忽视的疾病,保持韧性、影响力和社会相关性。
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引用次数: 0
The effect of meteorological factors on severe fever with thrombocytopenia syndrome: Evidence from 34 Chinese cities 气象因素对发热伴血小板减少综合征的影响:来自中国34个城市的证据
IF 4.5 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-11 DOI: 10.1016/j.onehlt.2025.101295
Guangju Mo , Xiyuan Huo , Meshack Kipkogei Biwott , Nan Chang , Haoqiang Ji , Lianfang Feng , Huaiping Zhu , Qiyong Liu

Background

Severe fever with thrombocytopenia syndrome (SFTS) is a climate-sensitive infectious disease, and its spatial distribution has been expanding in recent years. This study aimed to investigate the influence of meteorological factors on SFTS incidence.

Methods

Data on SFTS was extracted from the Infectious Disease Surveillance Report Management System from January 1, 2011 to December 31, 2023. A two-stage hierarchical analytical framework was employed in this study. First, a distributed lag nonlinear model was utilized to characterize the nonlinear exposure-response relationships between meteorological factors and the incidence of SFTS at the municipal level. Second, a multivariate meta-analysis was conducted to synthesize city-specific effect estimates, with explicit adjustment for inter-regional heterogeneity.

Results

From 2011 to 2023, 34 cities with cumulative cases ≥100 were included in the final analysis, which accounted for 94.59 % of the total SFTS cases during the same period in mainland China. The incidence risk of SFTS was positively correlated with temperature, relative humidity, precipitation, normalized difference vegetation index, and land cover, but negatively correlated with atmospheric pressure. The exposure-response relationship between average temperature and SFTS risk exhibited a single peak at 24.70 °C (RR = 2.78, 95 % CI: 1.14–6.79). Stratified analysis revealed the highest temperature-related risk in Eastern China at 27.50 °C (RR = 9.85, 95 % CI: 1.87–51.76), which was significantly elevated compared to central and northeastern regions. Regional variability was also observed for precipitation: the overall minimum risk occurred at 15.30 mm (RR = 0.49, 95 % CI: 0.24–0.98), whereas the risk nadir in Eastern China was at 16.02 mm monthly precipitation (RR = 0.29, 95 % CI: 0.10–0.80).

Conclusions

This study demonstrates that temperature and precipitation significantly influence SFTS incidence, with effects lagging consistently by 1–2 months. These findings can be integrated into China's Smart Multi-Point Surveillance System by incorporating region-specific meteorological thresholds to trigger early warnings. The system could then activate targeted interventions, such as tick control measures, accounting for the observed 1–2 month lag between climatic conditions and disease occurrence. Such climate-adaptive approaches would enhance the precision and timeliness of SFTS prevention and control efforts nationwide.
发热伴血小板减少综合征(SFTS)是一种气候敏感型传染病,近年来其空间分布范围不断扩大。本研究旨在探讨气象因素对SFTS发病的影响。方法从2011年1月1日至2023年12月31日传染病监测报告管理系统中提取SFTS病例数据。本研究采用两阶段层次分析框架。首先,利用分布滞后非线性模型表征了气象因子与城市SFTS发病率之间的非线性暴露响应关系。其次,通过多元荟萃分析综合城市效应,并对区域间异质性进行了明确调整。结果2011 - 2023年共纳入34个累计病例≥100例的城市,占同期中国大陆SFTS病例总数的94.59%。SFTS发病风险与气温、相对湿度、降水、归一化植被指数、土地覆被呈显著正相关,与气压呈显著负相关。平均温度与SFTS风险的暴露-响应关系在24.70℃时呈现单峰(RR = 2.78, 95% CI: 1.14 ~ 6.79)。分层分析显示,中国东部地区温度相关风险最高,为27.50°C (RR = 9.85, 95% CI: 1.87 ~ 51.76),与中部和东北部地区相比显著升高。降水也存在区域差异:总体最小风险发生在15.30 mm (RR = 0.49, 95% CI: 0.24-0.98),而中国东部的风险最低点发生在16.02 mm (RR = 0.29, 95% CI: 0.10-0.80)。结论温度和降水对SFTS发病率有显著影响,且滞后1 ~ 2个月。这些发现可以通过结合特定区域的气象阈值来触发预警,整合到中国的智能多点监测系统中。然后,该系统可以启动有针对性的干预措施,如蜱虫控制措施,以弥补观测到的气候条件与疾病发生之间1-2个月的滞后。这种适应气候变化的方法将提高全国SFTS防控工作的准确性和及时性。
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引用次数: 0
Hotspot or blind spot? Fine-scale spatial heterogeneity and methodological bias in Chlamydia psittaci prevalence rate reports from urban feral pigeons (Columba livia f. urbana) 热点还是盲区?城市野鸽(Columba livia . urbana)鹦鹉热衣原体患病率报告的精细尺度空间异质性和方法学偏差
IF 4.5 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-10 DOI: 10.1016/j.onehlt.2025.101293
Valentin Adrian Kiss , Bram Vanden Broecke , Sofie De Bruyckere , An Martel , Wendt Müller
Urban wildlife populations often carry zoonotic pathogens that pose considerable public health risks through direct contact with humans. However, disease prevalence in urban settings is generally reported at the city level, which disregards spatial heterogeneity due to local differences in habitat structure or resource availability in the urban landscape. This study therefore examines the fine-scale spatial heterogeneity of Chlamydia psittaci, a generalist bacterium that frequently infects feral pigeons, in Antwerp, Belgium. We collected samples from 377 pigeons at 23 locations and performed qPCR screening for C. psittaci. At the same time, we performed an extensive literature review that includes 20 studies from 29 unique cities globally. Our findings indicate that the prevalence variance within Antwerp (CV = 0.70) is comparable to the variation reported among cities worldwide (CV = 0.88), suggesting that distinct locations within a single city can exhibit differences comparable to those between entirely different cities. Our data suggest that citywide or even countrywide are likely confounded by small scale spatial infection heterogeneity. A combination simulation showed that at least 12 unique sampling sites are necessary to accurately assess the true prevalence at the city level. Finally, we could show that also the screening method influences reported prevalence, with blood samples and non-PCR screening inflating reported prevalence rates. Taken together, we recommend that urban surveillance reports include at least 12 sampling sites, use standardized screening protocols and provide site-level data so that fine-scale heterogeneity can be taken into account.
城市野生动物种群往往携带人畜共患病原体,通过与人类直接接触构成相当大的公共卫生风险。然而,城市环境中的疾病流行情况一般是在城市一级报告的,这忽略了由于生境结构或城市景观资源可用性的地方差异而造成的空间异质性。因此,本研究考察了比利时安特卫普市鹦鹉热衣原体的精细尺度空间异质性。鹦鹉热衣原体是一种常见的细菌,经常感染野鸽。我们采集了23个地点377只鸽子的样本,并进行了鹦鹉螺的qPCR筛选。同时,我们进行了广泛的文献综述,其中包括来自全球29个独特城市的20项研究。我们的研究结果表明,安特卫普的患病率差异(CV = 0.70)与世界各地城市之间的差异(CV = 0.88)相当,这表明单个城市内不同地点的差异可以与完全不同的城市之间的差异相当。我们的数据表明,全市甚至全国范围内的小尺度空间感染异质性可能混淆。综合模拟结果表明,至少需要12个独特的采样点才能准确评估城市水平的真实患病率。最后,我们可以证明筛查方法也影响报告的患病率,血液样本和非pcr筛查夸大了报告的患病率。综上所述,我们建议城市监测报告至少包括12个采样点,使用标准化的筛选方案,并提供站点级别的数据,以便考虑到精细尺度的异质性。
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引用次数: 0
Modeling the impact of anthrax vaccination on buffalo outbreak dynamics in northern Vietnam 模拟炭疽疫苗接种对越南北部水牛疫情动态的影响
IF 4.5 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-10 DOI: 10.1016/j.onehlt.2025.101294
Francisca Javiera Rudolph , Tan Minh Luong , Thai My Do , Van Binh Trinh , Ba Uyen Pham , Minh Dat Hoang , Anh Hung Pham , Van Truong Lu , Van Khang Pham , Thanh Long Pham , Quang Thai Pham , Thi Thu Ha Hoang , Thi Mai Hung Tran , Juan Pablo Gomez , José Miguel Ponciano , Jason K. Blackburn
A widespread and underreported zoonosis, anthrax is a severe infectious disease of significant public health concern for humans, livestock, and wildlife. In this study, we used historical data from 1991 to 2020 from northern Vietnam and a simulation model to investigate the effects of different vaccination strategies on livestock outbreaks. We developed a novel approach combining semi-synthetic data generation and a sliding windows model fitting routine to estimate disease transmission parameters from surveillance data and address the temporal mismatch between pathogen transmission dynamics and disease reporting. Results showed that vaccination leads to a significant reduction in buffalo mortality, with reactive and increasing vaccination campaigns having the largest impact in reducing outbreak size. Reactive and decreasing vaccination campaigns initially controlled outbreaks, but mortality increased as soon as vaccination ceased, highlighting the need for sustained, long-term vaccination. In scenarios where populations had high natural immunity, the impact of vaccination was less pronounced, though still evident, suggesting that prioritizing vaccination efforts for more susceptible populations may provide a greater return on investment in outbreak prevention and control. Simulation models can offer valuable insights into vaccination and control strategies, providing tools to compare and evaluate potential outbreak scenarios. Our findings underscore the value of mathematical and simulation approaches to overcome data challenges and underreporting in global disease management for anthrax and other neglected diseases. We highlight the importance of continued investment in surveillance and modeling efforts, while providing a practical approach to optimize the use of existing data in Vietnam and similar settings.
炭疽是一种广泛存在但报告不足的人畜共患病,是一种严重的传染病,对人类、牲畜和野生动物造成重大公共卫生关注。在这项研究中,我们使用越南北部1991年至2020年的历史数据和模拟模型来研究不同疫苗接种策略对牲畜疫情的影响。我们开发了一种结合半合成数据生成和滑动窗口模型拟合常规的新方法,从监测数据中估计疾病传播参数,并解决病原体传播动态和疾病报告之间的时间不匹配问题。结果表明,疫苗接种导致水牛死亡率显著降低,反应性和增加的疫苗接种运动对减少疫情规模的影响最大。反应性和减少的疫苗接种运动最初控制了疫情,但一旦疫苗接种停止,死亡率就会上升,突出表明需要持续、长期的疫苗接种。在人群具有高度天然免疫力的情况下,疫苗接种的影响不太明显,但仍然很明显,这表明优先为更易感人群接种疫苗可能会为疫情预防和控制方面的投资带来更大的回报。模拟模型可以为疫苗接种和控制策略提供有价值的见解,提供比较和评估潜在爆发情景的工具。我们的研究结果强调了数学和模拟方法在克服炭疽和其他被忽视疾病的全球疾病管理中的数据挑战和漏报的价值。我们强调继续投资于监测和建模工作的重要性,同时提供一种实用的方法来优化越南和类似环境中现有数据的使用。
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引用次数: 0
An overview of HPAI H5N1 clade 2.3.4.4b and its emerging threat in mainland Australia: Identified knowledge gaps 高致病性H5N1分支2.3.4.4b及其在澳大利亚大陆新出现的威胁概述:已查明的知识差距
IF 4.5 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-10 DOI: 10.1016/j.onehlt.2025.101292
Pan Zhang, C Raina MacIntyre
The highly pathogenic avian influenza (HPAI) H5N1 virus, particularly clade 2.3.4.4b, is currently causing a panzootic. The threat of its incursion into mainland Australia is escalating, especially following its detection in Antarctica and recently on Australia's sub-Antarctic territory, Heard Island. Comprehensive research on this emerging risk remains limited, partly due to ongoing rapid genomic mutations and evolving epidemiological dynamics. This review provides an in-depth analysis of clade 2.3.4.4b H5N1 and highlights critical knowledge gaps that must be addressed to mitigate the potential threat to mainland Australia.
高致病性禽流感(HPAI) H5N1病毒,特别是进化支2.3.4.4b,目前正在引起流行性传染病。它入侵澳大利亚大陆的威胁正在升级,尤其是在南极洲和最近在澳大利亚亚南极领土赫德岛被发现之后。对这一新出现的风险的全面研究仍然有限,部分原因是持续快速的基因组突变和不断变化的流行病学动态。本综述对H5N1进化枝2.3.4.4b进行了深入分析,并强调了必须解决的关键知识空白,以减轻对澳大利亚大陆的潜在威胁。
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引用次数: 0
High hepatitis E virus prevalence in pig slurry samples from the north-western region of Germany 德国西北地区猪浆样本中戊型肝炎病毒的高流行率
IF 4.5 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-08 DOI: 10.1016/j.onehlt.2025.101291
Florian Hinte , Marc Lütgehetmann , Toni Luise Meister , Katja Giersch , Maura Dandri , Julian Schulze zur Wiesch , Sven Pischke
Pork is recognized as the primary source of transmission for Hepatitis E virus (HEV) genotypes 3 and 4 (gt3/4) in industrialized countries. In Germany, approximately 10 % of retail pork samples test positive for HEV. However, the potential role of pig manure as a reservoir contributing to the environmental and zoonotic transmission of HEV genotype 3 remains insufficiently characterized.
To assess HEV contamination in manure, 61 pig slurry samples were collected from various collection points in northwestern Germany and analyzed for HEV and hepatitis A virus (HAV) RNA using quantitative PCR. In line with the “One Health” concept, which emphasizes the interconnectedness of humans, animals, and the environment, this study aimed to evaluate pig manure as a potential source of HEV contamination of agricultural land and food plants, thus posing a risk to both omnivorous and vegetarian populations.
HEV RNA was detected in 67 % (41/61) of the samples, with viral loads ranging from 5.2 × 102 to 1.8 × 105 copies/mL (median 6.8 × 103 copies/mL), whereas HAV RNA was not detected in any sample. Genotyping via nested PCR identified HEV genotype 3c, a subtype frequently detected in human infections in Germany. To further characterize the viral particles, four samples with the highest viral loads were subjected to linear density gradient ultracentrifugation. Two distinct fractions were identified, corresponding to enveloped particles (suggesting urinary origin) and non-enveloped particles (suggesting fecal origin).
In conclusion, this study provides evidence for the frequent presence of both enveloped and non-enveloped HEV particles in pig slurry in Germany. These findings highlight manure as a potential environmental reservoir for HEV and underscore the need for further studies to determine HEV infectivity in slurry and to assess its epidemiological significance within the One Health framework.
在工业化国家,猪肉被认为是戊型肝炎病毒(HEV)基因3型和4型(gt3/4)的主要传播来源。在德国,大约10%的零售猪肉样本检测出戊肝病毒阳性。然而,猪粪作为促进HEV基因3型环境和人畜共患传播的蓄水池的潜在作用仍然没有得到充分的表征。为了评估猪粪中HEV的污染情况,从德国西北部的不同收集点收集了61份猪浆样品,并使用定量PCR分析了HEV和甲型肝炎病毒(HAV) RNA。根据强调人类、动物和环境相互联系的“同一个健康”概念,本研究旨在评估猪粪作为农业用地和食用植物HEV污染的潜在来源,从而对杂食性和素食性人群构成风险。67%(41/61)的样本中检测到HEV RNA,病毒载量范围为5.2 × 102至1.8 × 105拷贝/mL(中位数为6.8 × 103拷贝/mL),而HAV RNA未在任何样本中检测到。通过巢式PCR进行基因分型鉴定出HEV基因型3c,这是在德国人类感染中经常检测到的一种亚型。为了进一步表征病毒颗粒,四种病毒载量最高的样品进行了线性密度梯度超离心。鉴定出两种不同的组分,对应于包膜颗粒(提示尿源)和非包膜颗粒(提示粪便源)。总之,这项研究为德国猪浆中经常存在包膜和非包膜HEV颗粒提供了证据。这些发现强调了粪便是HEV的潜在环境宿主,并强调需要进一步研究以确定猪粪中的HEV传染性,并在“同一个健康”框架内评估其流行病学意义。
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引用次数: 0
Metagenomic survey reveals Volzhskoe tick virus in Hyalomma ticks for the first time in western Europe, North-Eastern Spain. 宏基因组调查首次在西欧、西班牙东北部的透明体蜱中发现伏尔日斯科蜱病毒。
IF 4.5 2区 医学 Q1 INFECTIOUS DISEASES Pub Date : 2025-12-04 eCollection Date: 2025-12-01 DOI: 10.1016/j.onehlt.2025.101279
Laura Carrera-Faja, Mariette Viladomat Jasso, Iris Sarmiento, Jordi Manuel Cabrera-Gumbau, Johan Espunyes, Jaime Martínez-Urtaza, Oscar Cabezón

Ticks are reservoirs and vectors of several emerging arboviruses, yet their associated virome remains poorly characterized. Using meta-transcriptomic sequencing, we surveyed Hyalomma marginatum and Rhipicephalus bursa ticks collected from areas with contrasting Crimean-Congo haemorrhagic fever virus (CCHFV) seroprevalence in wild ungulates in north-eastern Spain, a region with no reported CCHF cases in humans. While CCHFV RNA was not detected, we identified Volzhskoe tick virus (VTV), a recently described member of the class Bunyaviricetes, first identified in Russia, in H. marginatum from the Ports de Tortosa i Beseit Natural Park-making its first report of VTV in Western Europe. These findings suggest a broader distribution of VTV and raise important questions about its potential interactions with CCHFV, pathogenicity and host range. Moreover, our approach underscores the value of metagenomic surveillance for improving our understanding of tick-borne virus ecology.

蜱是几种新出现的虫媒病毒的宿主和载体,但其相关病毒体的特征仍然很差。利用meta转录组测序,我们调查了从西班牙东北部野生有蹄类动物中克里米亚-刚果出血热病毒(CCHFV)血清阳性率对比地区采集的边缘透明体和囊状鼻头蜱,该地区未报告人类感染CCHF病例。虽然没有检测到CCHFV RNA,但我们在波尔图尔托尔萨i贝维特自然公园的边缘蜱中发现了Volzhskoe蜱病毒(VTV),这是西欧首次报道的VTV病毒,是最近在俄罗斯首次发现的Bunyaviricetes纲成员。这些发现表明VTV的分布范围更广,并对其与CCHFV的潜在相互作用、致病性和宿主范围提出了重要问题。此外,我们的方法强调了宏基因组监测对提高我们对蜱传病毒生态学的理解的价值。
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引用次数: 0
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