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The soybean NUCLEAR FACTOR-Y C4 and α-EXPANSIN 7 module influences phosphorus uptake by regulating root morphology 大豆 NUCLEAR FACTOR-Y C4 和 α-EXPANSIN 7 模块通过调节根系形态影响磷的吸收
IF 7.4 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-09 DOI: 10.1093/plphys/kiae478
Xiaoqian Liu, Yupeng Cai, Weiwei Yao, Li Chen, Wensheng Hou
Soybean (Glycine max) is a globally important crop; however, its productivity is severely impacted by phosphorus (P) deficiency. Understanding the transcriptional regulation of low P (LP) response mechanisms is essential for enhancing soybean P use efficiency. In this study, we found that the Nuclear Factor-Y (NF-Y) transcription factor GmNF-YC4, in addition to its previously discovered role in regulating flowering time, possesses another functions in modulating root morphology and P uptake. Knockout of GmNF-YC4 notably boosted root proliferation and P uptake while also influencing the expression of genes related to LP stress. GmNF-YC4 acts as a specific DNA-binding transcriptional repressor, modulating the expression of the soybean α-EXPANSIN 7 (GmEXPA7) gene, which encodes a cell wall-loosening factor, through direct binding to its promoter region. Further investigation revealed that GmEXPA7 expression is predominantly root-specific and induced by LP. Moreover, overexpression of GmEXPA7 in soybean hairy roots enhanced LP tolerance by stimulating root growth and P uptake. We further screened and obtained more potential target genes of GmNF-YC4 via DNA affinity purification sequencing, including those related to LP stress. These findings underscore the pivotal role of the GmNF-YC4-GmEXPA7 module as a key regulator in mitigating LP stress in soybean.
大豆(Glycine max)是全球重要的农作物,但其生产率受到磷(P)缺乏的严重影响。了解低磷(LP)响应机制的转录调控对于提高大豆的磷利用效率至关重要。在本研究中,我们发现核因子-Y(NF-Y)转录因子 GmNF-YC4 除了之前发现的调控开花时间的作用外,还具有调控根系形态和 P 吸收的功能。敲除 GmNF-YC4 能显著促进根的增殖和钾的吸收,同时还能影响 LP 胁迫相关基因的表达。GmNF-YC4作为一种特异性DNA结合转录抑制因子,通过直接与编码细胞壁疏松因子的大豆α-EXPANSIN 7(GmEXPA7)基因启动子区域结合,调节该基因的表达。进一步的研究发现,GmEXPA7的表达主要是根特异性的,并由LP诱导。此外,在大豆毛根中过表达 GmEXPA7 可通过刺激根系生长和 P 吸收来增强对 LP 的耐受性。通过DNA亲和纯化测序,我们进一步筛选并获得了更多GmNF-YC4的潜在靶基因,包括与LP胁迫相关的基因。这些发现强调了 GmNF-YC4-GmEXPA7 模块作为关键调控因子在缓解大豆 LP 胁迫中的关键作用。
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引用次数: 0
Aquaporin CmPIP2; 3 links H2O2 signal and antioxidation to modulate trehalose-induced cold tolerance in melon seedlings 水蒸发蛋白 CmPIP2; 3 将 H2O2 信号和抗氧化联系起来,调节甜瓜幼苗中由三卤糖诱导的耐寒性
IF 7.4 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-09 DOI: 10.1093/plphys/kiae477
Yuqing Han, Fei Luo, Adan Liang, Dongdong Xu, Hongyi Zhang, Tao Liu, Hongyan Qi
Cold stress severely restricts the growth and development of cold-sensitive crops. Trehalose (Tre), known as the ‘sugar of life’, plays key roles in regulating plant cold tolerance by triggering antioxidation. However, the relevant regulatory mechanism remains unclear. Here, we confirmed that Tre triggers apoplastic hydrogen peroxide (H2O2) production and thus plays key roles in improving the cold tolerance of melon (Cucumis melo var. makuwa Makino) seedlings. Moreover, Tre treatment can promote the transport of apoplastic H2O2 to the cytoplasm. This physiological process may depend on aquaporins. Further studies showed that a Tre-responsive plasma membrane intrinsic protein 2; 3 (CmPIP2; 3) had strong H2O2 transport function and that silencing CmPIP2; 3 significantly weakened apoplastic H2O2 transport and reduced the cold tolerance of melon seedlings. Yeast library and protein-DNA interaction technology were then used to screen two Tre-responsive transcription factors, abscisic acid responsive element (ABRE)-binding factor 2 (CmABF2) and abscisic acid responsive element (ABRE)-binding factor 3 (CmABF3), which can bind to the ABRE motif of the CmPIP2; 3 promoter and activate its expression. Silencing of CmABF2 and CmABF3 further dramatically increased the ratio of apoplastic H2O2/cytoplasm H2O2 and reduced the cold tolerance of melon seedlings. This study uncovered that Tre treatment induces CmABF2/3 to positively regulate CmPIP2; 3 expression. CmPIP2; 3 subsequently enhances the cold tolerance of melon seedlings by promoting the transport of apoplastic H2O2 into the cytoplasm for conducting redox signals and stimulating downstream antioxidation.
冷胁迫严重限制了对冷敏感作物的生长和发育。被称为 "生命之糖 "的曲哈洛糖(Trehalose,Tre)通过触发抗氧化作用在调节植物耐寒性方面发挥着关键作用。然而,相关的调控机制仍不清楚。在这里,我们证实了海藻糖能引发凋亡体过氧化氢(H2O2)的产生,从而在提高甜瓜(Cucumis melo var.此外,Tre 处理还能促进凋亡体 H2O2 向细胞质运输。这一生理过程可能依赖于水蒸气蛋白。进一步的研究表明,一种Tre反应性质膜固有蛋白2;3(CmPIP2;3)具有很强的H2O2转运功能,沉默CmPIP2;3会显著削弱凋落物H2O2的转运,降低甜瓜幼苗的耐寒性。随后,利用酵母文库和蛋白质-DNA相互作用技术筛选出两种赤霉酸响应转录因子--赤霉酸响应元件(ABRE)结合因子2(CmABF2)和赤霉酸响应元件(ABRE)结合因子3(CmABF3),它们能与CmPIP2; 3启动子的ABRE基序结合并激活其表达。沉默 CmABF2 和 CmABF3 会进一步显著提高凋落物 H2O2/细胞质 H2O2 的比例,降低甜瓜幼苗的耐寒性。这项研究发现,Tre 处理会诱导 CmABF2/3 正向调节 CmPIP2; 3 的表达。随后,CmPIP2; 3 通过促进凋落物 H2O2 向细胞质运输以传导氧化还原信号并刺激下游抗氧化,从而增强甜瓜幼苗的耐寒性。
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引用次数: 0
Transcription factor CpWRKY50 enhances anthracnose resistance by promoting jasmonic acid signaling in papaya 转录因子 CpWRKY50 通过促进木瓜的茉莉酸信号转导增强抗炭疽病能力
IF 7.4 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-09 DOI: 10.1093/plphys/kiae479
Min Yang, Chenping Zhou, Ruibin Kuang, Xiaming Wu, Chuanhe Liu, Han He, Yuerong Wei
Colletotrichum brevisporum is an important fungal pathogen that causes anthracnose and has led to serious postharvest losses of papaya (Carica papaya L.) fruit in recent years. WRKY transcription factors play vital roles in regulating plant resistance to pathogens, but their functions in papaya anthracnose resistance need further exploration. In this study, we identified a WRKY transcription factor, CpWRKY50, which belongs to the WRKY IIc subfamily. During infection with C. brevisporum, expression of CpWRKY50 in anthracnose-resistant papaya cultivars was significantly higher than that in susceptible cultivars. CpWRKY50 was induced by methyl jasmonate, and CpWRKY50 localized in the nucleus. In yeast, full-length CpWRKY50 had transactivation activity, but CpWRKY50 variants truncated at the N or C termini did not. CpWRKY50 positively regulated papaya resistance to C. brevisporum, as demonstrated by transient overexpression of CpWRKY50 in papaya and heterologous expression of CpWRKY50 in tomato. Moreover, endogenous jasmonic acid (JA) and JA-isoleucine levels in the fruits of transgenic tomato OE lines were higher than in wild type both before and after inoculation with C. brevisporum, indicating that increased CpWRKY50 expression promotes JA accumulation. Furthermore, our results revealed CpWRKY50 directly binds to W-box motifs (TTGACC) in the promoters of two JA signaling-related genes, CpMYC2 and pathogenesis-related 4 CpPR4, thereby activating their expression. Our data support that CpWRKY50 positively regulates anthracnose resistance in papaya by promoting JA signaling. These results broaden our understanding of papaya disease resistance mechanisms and will facilitate the genetic improvement of papaya through molecular breeding.
Colletotrichum brevisporum 是一种重要的真菌病原体,可引起炭疽病,近年来已导致木瓜(Carica papaya L.)果实采后的严重损失。WRKY 转录因子在调节植物对病原菌的抗性方面发挥着重要作用,但其在木瓜炭疽病抗性中的功能还需要进一步探索。本研究发现了一种 WRKY 转录因子 CpWRKY50,它属于 WRKY IIc 亚家族。在感染 C. brevisporum 期间,抗炭疽病木瓜品种中 CpWRKY50 的表达量明显高于易感品种。茉莉酸甲酯诱导 CpWRKY50,CpWRKY50 定位于细胞核中。在酵母中,全长 CpWRKY50 具有转录激活活性,但 N 端或 C 端截短的 CpWRKY50 变体不具有这种活性。木瓜中 CpWRKY50 的瞬时过表达和番茄中 CpWRKY50 的异源表达证明,CpWRKY50 能正向调节木瓜对 C. brevisporum 的抗性。此外,在接种 C. brevisporum 之前和之后,转基因番茄 OE 株系果实中的内源茉莉酸(JA)和 JA-异亮氨酸水平均高于野生型,表明 CpWRKY50 表达的增加促进了 JA 的积累。此外,我们的研究结果表明,CpWRKY50 可直接与两个 JA 信号相关基因(CpMYC2 和致病相关 4 CpPR4)启动子中的 W-box 基序(TTGACC)结合,从而激活它们的表达。我们的数据支持 CpWRKY50 通过促进 JA 信号转导来正向调节木瓜的炭疽病抗性。这些结果拓宽了我们对番木瓜抗病机制的认识,将有助于通过分子育种对番木瓜进行遗传改良。
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引用次数: 0
A hierarchical ubiquitination-mediated regulatory module controls bamboo lignin biosynthesis 分层泛素化介导的调控模块控制着竹子木质素的生物合成
IF 7.4 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-09 DOI: 10.1093/plphys/kiae480
Kebin Yang, Ziyang Li, Chenglei Zhu, Yan Liu, Hui Li, Xiaolin Di, Xinzhang Song, Haiqing Ren, Zhimin Gao
The lignocellulosic feedstock of woody bamboo shows promising potential as an alternative to conventional wood, attributed to its excellent properties. The content and distribution of lignin serve as the foundation of these properties. While the regulation of lignin biosynthesis in bamboo has been extensively studied at the transcriptional level, its posttranslational control has remained poorly understood. This study provides a ubiquitinome dataset for moso bamboo (Phyllostachys edulis), identifying 13015 ubiquitinated sites in 4849 unique proteins. We further identified Kelch repeat F-boxprotein 9 (PeKFB9) that plays a negative role in lignin biosynthesis. Heterologous expression of PeKFB9 resulted in reduced accumulation of lignin and decreased phenylalanine ammonia-lyase (PAL) activities. Both in vitro and in vivo assays identified interaction between PeKFB9 and PePAL10. Further examination revealed that SCFPeKFB9 mediated the ubiquitination and degradation of PePAL10 via the 26S proteasome pathway. Moreover, PebZIP28667 could bind to the PePAL10 promoter to significantly inhibit its transcription, and ubiquitination of PebZIP28667 weakened this inhibition. Collectively, our findings reveal a PeKFB9-PePAL10/PebZIP28667-PePAL10 module that acts as a negative regulator of lignin biosynthesis. This study advances our understanding of posttranslational regulation in plant lignification, which will facilitate the improvement of the properties of bamboo wood and the breeding of varieties.
木竹的木质纤维素原料因其优异的特性,显示出替代传统木材的巨大潜力。木质素的含量和分布是这些特性的基础。虽然在转录水平上对竹子木质素生物合成的调控进行了广泛研究,但对其翻译后调控仍知之甚少。本研究提供了毛竹(Phyllostachys edulis)泛素组数据集,确定了 4849 个独特蛋白质中的 13015 个泛素化位点。我们进一步鉴定了在木质素生物合成中起负作用的 Kelch 重复 F-boxprotein 9(PeKFB9)。异源表达 PeKFB9 可减少木质素的积累并降低苯丙氨酸氨解酶(PAL)的活性。体外和体内试验都发现了 PeKFB9 和 PePAL10 之间的相互作用。进一步研究发现,SCFPeKFB9 通过 26S 蛋白酶体途径介导了 PePAL10 的泛素化和降解。此外,PebZIP28667可与PePAL10启动子结合,显著抑制其转录,而PebZIP28667的泛素化则削弱了这种抑制作用。总之,我们的研究结果揭示了一个 PeKFB9-PePAL10/PebZIP28667-PePAL10 模块,它是木质素生物合成的负调控因子。这项研究加深了我们对植物木质素化的翻译后调控的理解,这将有助于改善竹材的特性和培育竹材品种。
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引用次数: 0
Phosphorylation of auxin signaling repressor IAA8 by heat-responsive MPKs causes defective flower development. 热响应 MPK 磷酸化辅助素信号抑制因子 IAA8 会导致花发育缺陷。
IF 6.5 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-06 DOI: 10.1093/plphys/kiae470
Sun Ho Kim, Shah Hussain, Huyen Trang Thi Pham, Ulhas Sopanrao Kadam, Sunghwa Bahk, Zakiyah Ramadany, Jeongwoo Lee, Young Hun Song, Kyun Oh Lee, Jong Chan Hong, Woo Sik Chung

Heat stress is a substantial and imminent threat to plant growth and development. Understanding its adverse effects on plant development at the molecular level is crucial for sustainable agriculture. However, the molecular mechanism underlying how heat stress causes developmental defects in flowers remains poorly understood. Here, we identified Indole-3-Acetic Acid 8 (IAA8), a repressor of auxin signaling, as a substrate of mitogen-activated protein kinases (MPKs) in Arabidopsis thaliana, and found that MPK-mediated phosphorylation of IAA8 inhibits flower development. MPKs phosphorylated three residues of IAA8: S74, T77, and S135. Interestingly, transgenic plants overexpressing a phospho-mimicking mutant of IAA8 (IAA8DDD OX) exhibited defective flower development due to high IAA8 levels. Furthermore, MPK-mediated phosphorylation inhibited IAA8 polyubiquitination, thereby significantly increasing its stability. Additionally, the expression of key transcription factors involved in flower development, such as bZIP and MYB genes, was significantly perturbed in the IAA8DDD OX plants. Collectively, our study demonstrates that heat stress inhibits flower development by perturbing the expression of flower development genes through the MPK-mediated phosphorylation of IAA8, suggesting that Aux/IAA phosphorylation enables plants to fine-tune their development in response to environmental stress.

热胁迫是对植物生长和发育的一个迫在眉睫的重大威胁。从分子水平上了解热胁迫对植物发育的不利影响对于可持续农业至关重要。然而,人们对热胁迫如何导致花卉发育缺陷的分子机制仍然知之甚少。在这里,我们发现拟南芥中抑制辅酶信号转导的吲哚-3-乙酸 8(IAA8)是有丝分裂原激活蛋白激酶(MPKs)的底物,并发现 MPK 介导的 IAA8 磷酸化抑制了花的发育。MPK 磷酸化了 IAA8 的三个残基:S74、T77 和 S135。有趣的是,过量表达IAA8的磷酸化模拟突变体(IAA8DDD OX)的转基因植株会因IAA8水平过高而表现出花发育缺陷。此外,MPK 介导的磷酸化抑制了 IAA8 的多泛素化,从而显著提高了其稳定性。此外,参与花发育的关键转录因子(如 bZIP 和 MYB 基因)的表达在 IAA8DDD OX 植株中也受到显著干扰。总之,我们的研究表明,热胁迫通过MPK介导的IAA8磷酸化扰乱了花发育基因的表达,从而抑制了花的发育。
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引用次数: 0
Bestrophin-like protein 4 is involved in photosynthetic acclimation to light fluctuations in Chlamydomonas. 类 Bestrophin 蛋白 4 参与了衣藻光合作用对光照波动的适应。
IF 6.5 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-06 DOI: 10.1093/plphys/kiae450
Liat Adler, Chun Sing Lau, Kashif M Shaikh, Kim A van Maldegem, Alex L Payne-Dwyer, Cecile Lefoulon, Philipp Girr, Nicky Atkinson, James Barrett, Tom Z Emrich-Mills, Emilija Dukic, Michael R Blatt, Mark C Leake, Gilles Peltier, Cornelia Spetea, Adrien Burlacot, Alistair J McCormick, Luke C M Mackinder, Charlotte E Walker

In many eukaryotic algae, CO2 fixation by Rubisco is enhanced by a CO2-concentrating mechanism, which utilizes a Rubisco-rich organelle called the pyrenoid. The pyrenoid is traversed by a network of thylakoid membranes called pyrenoid tubules, which are proposed to deliver CO2. In the model alga Chlamydomonas (Chlamydomonas reinhardtii), the pyrenoid tubules have been proposed to be tethered to the Rubisco matrix by a bestrophin-like transmembrane protein, BST4. Here, we show that BST4 forms a complex that localizes to the pyrenoid tubules. A Chlamydomonas mutant impaired in the accumulation of BST4 (bst4) formed normal pyrenoid tubules, and heterologous expression of BST4 in Arabidopsis (Arabidopsis thaliana) did not lead to the incorporation of thylakoids into a reconstituted Rubisco condensate. Chlamydomonas bst4 mutants did not show impaired growth under continuous light at air level CO2 but were impaired in their growth under fluctuating light. By quantifying the non-photochemical quenching (NPQ) of chlorophyll fluorescence, we propose that bst4 has a transiently lower thylakoid lumenal pH during dark-to-light transition compared to control strains. We conclude that BST4 is not a tethering protein but is most likely a pyrenoid tubule ion channel involved in the ion homeostasis of the lumen with particular importance during light fluctuations.

在许多真核藻类中,Rubisco 的二氧化碳固定作用通过一种二氧化碳浓缩机制得到加强,该机制利用了一种富含 Rubisco 的细胞器(称为类肾蕊管)。拟肾小管由称为拟肾小管的类木质膜网络穿过,拟肾小管被认为是输送二氧化碳的通道。在模式藻类衣藻(Chlamydomonas reinhardtii)中,拟肾小管被一种类似bestrophin的跨膜蛋白BST4拴在Rubisco基质上。在这里,我们发现 BST4 形成了一个定位于焦磷酸小管的复合物。BST4积累受损的衣藻突变体(bst4)形成了正常的类肾小管,而在拟南芥(Arabidopsis thaliana)中异源表达BST4并不会导致类肾小管并入重组的Rubisco缩合物中。衣藻 bst4 突变体在空气二氧化碳水平下的连续光照条件下没有表现出生长受损,但在波动光照条件下生长受损。通过量化叶绿素荧光的非光化学淬灭(NPQ),我们提出,与对照品系相比,bst4 在从暗到光的转变过程中,叶绿体内腔 pH 值会短暂降低。我们的结论是,BST4 不是一种系链蛋白,而很可能是一种参与腔内离子平衡的肾小管离子通道,在光波动期间具有特别重要的作用。
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引用次数: 0
Transcription factors WRKY2 and WRKY34 control LATERAL ORGAN BOUNDARIES DOMAIN10 expression in pollen vegetative cell nuclei. 转录因子 WRKY2 和 WRKY34 控制花粉无性细胞核中 LATERAL ORGAN BOUNDARIES DOMAIN10 的表达。
IF 6.5 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-05 DOI: 10.1093/plphys/kiae448
Thu-Hien Nguyen, Min Jung Kim, Jungmook Kim

The intricate regulation of gene expression determining cell fate during male gametogenesis involves a complex interplay of multiple transcriptional regulators. In Arabidopsis (Arabidopsis thaliana), the LATERAL ORGAN BOUNDARIES DOMAIN 10 (LBD10) transcription factor is prominent in early microspores and both the germ and vegetative cells of bicellular pollen, playing an important role in pollen development. However, in mature pollen, LBD10 exclusively localizes in the vegetative cell nucleus. Here, we identify cis-acting elements and trans-acting factors responsible for the specific expression of LBD10 in the vegetative cell nucleus during pollen maturation. Using a series of LBD10 promoter deletion constructs fused with GUS or GFP reporters, we pinpoint two crucial core promoter sequences. These sequences are situated within two 200 bp regions upstream of the start codon and independently govern LBD10 expression in the vegetative cell nucleus. We demonstrate that a W-box motif (AGTCAC) at -770 bp is essential for activating the expression of LBD10 in vegetative cells during pollen maturation. Our transient gene expression assays using Arabidopsis protoplasts and chromatin immunoprecipitation assays show that the transcription factors WRKY2 and WRKY34 recognize the LBD10 promoter region containing W-box motifs. Collectively, our findings suggest that WRKY2 and WRKY34 binding to the W-box motifs plays a role in the vegetative cell nucleus-specific expression of LBD10 in pollen. This interaction may contribute to male gametophyte development, shedding light on the intricate regulatory network governing this critical biological process.

雄性配子发生过程中决定细胞命运的基因表达的复杂调控涉及多个转录调节因子的复杂相互作用。在拟南芥(Arabidopsis thaliana)中,LATERAL ORGAN BOUNDARIES DOMAIN 10(LBD10)转录因子在早期小孢子以及双细胞花粉的生殖细胞和无性细胞中都很突出,在花粉发育过程中发挥着重要作用。然而,在成熟花粉中,LBD10 只定位在无性细胞核中。在这里,我们确定了花粉成熟过程中 LBD10 在无性细胞核中特异表达的顺式作用元件和反式作用因子。利用一系列与 GUS 或 GFP 报告融合的 LBD10 启动子缺失构建体,我们确定了两个关键的核心启动子序列。这些序列位于起始密码子上游的两个 200 bp 区域内,独立地控制着 LBD10 在无性细胞核中的表达。我们证明,在花粉成熟过程中,位于 -770 bp 处的 W-box 基序(AGTCAC)对于激活 LBD10 在无性细胞中的表达至关重要。我们利用拟南芥原生质体进行的瞬时基因表达试验和染色质免疫沉淀试验表明,转录因子 WRKY2 和 WRKY34 能识别含有 W-box 基序的 LBD10 启动子区域。总之,我们的研究结果表明,WRKY2 和 WRKY34 与 W-box motif 结合在花粉中 LBD10 的无性细胞核特异性表达中发挥作用。这种相互作用可能有助于雄配子体的发育,从而揭示了支配这一关键生物过程的错综复杂的调控网络。
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引用次数: 0
Advantage looping: Gene regulatory circuits between microRNAs and their target transcription factors in plants. 优势循环:植物中 microRNA 与其目标转录因子之间的基因调控回路。
IF 6.5 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-04 DOI: 10.1093/plphys/kiae462
Naveen Shankar, Utpal Nath

The 20-24 nucleotide microRNAs (miRNAs) and their target transcription factors (TF) have emerged as key regulators of diverse processes in plants, including organ development and environmental resilience. In several instances, the mature miRNAs degrade the TF-encoding transcripts, while their protein products in turn bind to the promoters of the respective miRNA-encoding genes and regulate their expression, thus forming feedback loops (FBLs) or feedforward loops (FFLs). Computational analysis suggested that such miRNA-TF loops are recurrent motifs in gene regulatory networks (GRNs) in plants as well as animals. In recent years, modeling and experimental studies have suggested that plant miRNA-TF loops in GRNs play critical roles in driving organ development and abiotic stress responses. Here, we discuss the miRNA-TF FBLs and FFLs that have been identified and studied in plants over the past decade. We then provide some insights into the possible roles of such motifs within GRNs. Lastly, we provide perspectives on future directions for dissecting the functions of miRNA-centric GRNs in plants.

20-24 个核苷酸的微小核糖核酸(miRNA)及其目标转录因子(TF)已成为植物多种过程(包括器官发育和环境适应能力)的关键调控因子。在一些情况下,成熟的 miRNA 会降解 TF 编码的转录本,而它们的蛋白产物反过来又会与相应的 miRNA 编码基因的启动子结合并调节其表达,从而形成反馈回路(FBL)或前馈回路(FFL)。计算分析表明,这种 miRNA-TF 循环是植物和动物基因调控网络(GRN)中经常出现的模式。近年来,建模和实验研究表明,植物基因调控网络中的 miRNA-TF 环路在驱动器官发育和非生物胁迫响应方面发挥着关键作用。在此,我们讨论了过去十年中在植物中发现和研究的 miRNA-TF FBLs 和 FFLs。然后,我们将深入探讨这些基序在 GRN 中可能发挥的作用。最后,我们展望了剖析植物中以 miRNA 为中心的 GRN 功能的未来方向。
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引用次数: 0
A conserved protein family in mirid bug Riptortus pedestris plays dual roles in regulating plant immunity. 镜蝽(Riptortus pedestris)中的一个保守蛋白家族在调节植物免疫方面发挥着双重作用。
IF 6.5 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-04 DOI: 10.1093/plphys/kiae468
Jiangxuan Zhou, Zhiyuan Yin, Danyu Shen, Qingsong Zhang, Yujie OYang, Xiaoxi Li, Yurong Ma, Lanping Ding, Yong Pei, Gan Ai, Yumei Dong, Donglei Yang, Yuanchao Wang, Daolong Dou, Ai Xia

The mirid bug (Riptortus pedestris), a major soybean pest, migrates into soybean fields during the pod filling stage and causes staygreen syndrome, which leads to substantial yield losses. The mechanism by which R. pedestris elicits soybean (Glycine max) defenses and counter-defenses remains largely unexplored. In this study, we characterized a protein family from R. pedestris, designated Riptortus pedestris HAMP 1 (RPH1) and its putative paralogs (RPH1L1, 2, 3, 4, and 5), whose members exhibit dual roles in triggering and inhibiting plant immunity. RPH1 and RPH1L1 function as herbivore-associated molecular patterns (HAMPs), activating pattern-triggered immunity (PTI) in tobacco (Nicotiana benthamiana) and G. max. Furthermore, RPH1 stimulates jasmonic acid and ethylene biosynthesis in G. max, thereby enhancing its resistance to R. pedestris feeding. Additionally, RPH1 homologs are universally conserved across various herbivorous species, with many homologs also acting as HAMPs that trigger plant immunity. Interestingly, the remaining RPH1 putative paralogs (RPH1L2-5) serve as effectors that counteract RPH1-induced PTI, likely by disrupting the extracellular perception of RPH1. This research uncovers a HAMP whose homologs are conserved in both chewing and piercing-sucking insects. Moreover, it unveils an extracellular evasion mechanism utilized by herbivores to circumvent plant immunity using functionally differentiated paralogs.

大豆的主要害虫镜蝽(Riptortus pedestris)会在豆荚灌浆期迁移到大豆田中,并引起留绿综合症,导致大量减产。R. pedestris引起大豆(Glycine max)防御和反防御的机制在很大程度上仍未得到探索。在这项研究中,我们鉴定了一个来自 R. pedestris 的蛋白质家族,命名为 Riptortus pedestris HAMP 1(RPH1)及其推测的旁系亲属(RPH1L1、2、3、4 和 5),其成员在触发和抑制植物免疫中表现出双重作用。RPH1 和 RPH1L1 可作为食草动物相关分子模式(HAMPs),激活烟草(Nicotiana benthamiana)和 G. max 的模式诱导免疫(PTI)。此外,RPH1 还能刺激 G. max 的茉莉酸和乙烯的生物合成,从而增强其对 R. pedestris 摄食的抵抗力。此外,RPH1 同源物在各种食草物种中具有普遍的保守性,许多同源物还可作为 HAMPs 触发植物免疫。有趣的是,其余的 RPH1 推测旁系亲属(RPH1L2-5)可能通过破坏 RPH1 的胞外感知,作为效应物抵消 RPH1 诱导的 PTI。这项研究发现了一种 HAMP,其同源物在咀嚼昆虫和刺吸昆虫中都是保守的。此外,它还揭示了食草动物利用功能分化的旁系亲属规避植物免疫的细胞外规避机制。
{"title":"A conserved protein family in mirid bug Riptortus pedestris plays dual roles in regulating plant immunity.","authors":"Jiangxuan Zhou, Zhiyuan Yin, Danyu Shen, Qingsong Zhang, Yujie OYang, Xiaoxi Li, Yurong Ma, Lanping Ding, Yong Pei, Gan Ai, Yumei Dong, Donglei Yang, Yuanchao Wang, Daolong Dou, Ai Xia","doi":"10.1093/plphys/kiae468","DOIUrl":"https://doi.org/10.1093/plphys/kiae468","url":null,"abstract":"<p><p>The mirid bug (Riptortus pedestris), a major soybean pest, migrates into soybean fields during the pod filling stage and causes staygreen syndrome, which leads to substantial yield losses. The mechanism by which R. pedestris elicits soybean (Glycine max) defenses and counter-defenses remains largely unexplored. In this study, we characterized a protein family from R. pedestris, designated Riptortus pedestris HAMP 1 (RPH1) and its putative paralogs (RPH1L1, 2, 3, 4, and 5), whose members exhibit dual roles in triggering and inhibiting plant immunity. RPH1 and RPH1L1 function as herbivore-associated molecular patterns (HAMPs), activating pattern-triggered immunity (PTI) in tobacco (Nicotiana benthamiana) and G. max. Furthermore, RPH1 stimulates jasmonic acid and ethylene biosynthesis in G. max, thereby enhancing its resistance to R. pedestris feeding. Additionally, RPH1 homologs are universally conserved across various herbivorous species, with many homologs also acting as HAMPs that trigger plant immunity. Interestingly, the remaining RPH1 putative paralogs (RPH1L2-5) serve as effectors that counteract RPH1-induced PTI, likely by disrupting the extracellular perception of RPH1. This research uncovers a HAMP whose homologs are conserved in both chewing and piercing-sucking insects. Moreover, it unveils an extracellular evasion mechanism utilized by herbivores to circumvent plant immunity using functionally differentiated paralogs.</p>","PeriodicalId":20101,"journal":{"name":"Plant Physiology","volume":null,"pages":null},"PeriodicalIF":6.5,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142126292","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The MdIAA29-MdARF4 complex plays an important role in balancing plant height with salt and drought stress responses. MdIAA29-MdARF4 复合物在平衡植物高度与盐和干旱胁迫响应方面发挥着重要作用。
IF 6.5 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-04 DOI: 10.1093/plphys/kiae467
Yingying Lei, Cui Chen, Wenjun Chen, Hongyan Dai

Breeding dwarf apple (Malus domestica) varieties is a recent trend in agriculture because such varieties are easy to maintain and have high yields; however, dwarf apple trees generally have poor stress tolerance. Balancing apple plant height and stress response has been an important breeding goal. In this study, aux/indole-3-acetic acid 29 gene in apple (MdIAA29) overexpression lines (#1, #2, #3) had reduced plant height by 39%, 31%, and 35%, respectively, suitable for close planting applications. Surprisingly, the dwarf MdIAA29-overexpression lines also showed increased plant tolerance to salt and drought stresses. Further analysis showed that MdIAA29 inhibited the regulation of auxin response factor 4 (ARF4) on Gretchen Hagen 3.9 (GH3.9) gene and 9-cis-epoxycarotenoid dioxygenase 3 (NCED3) gene in apple and changed the contents of auxin and abscisic acid in different tissues, thus achieving a balance between plant height and stress tolerance. In addition, we also found that MdIAA7 enhanced the inhibitory effect of MdIAA29 on MdARF4. In brief, the MdIAA29-MdARF4 complex significantly impacts the height of apple plants and their ability to respond to salt and drought stress.

培育矮化苹果(Malus domestica)品种是近年来农业的一个趋势,因为这类品种易于维护且产量高;然而,矮化苹果树的抗逆性通常较差。平衡苹果植株高度和抗逆性一直是一个重要的育种目标。在本研究中,苹果中的辅助/吲哚-3-乙酸 29 基因(MdIAA29)过表达株系(1 号、2 号和 3 号)的株高分别降低了 39%、31% 和 35%,适合密植应用。令人惊讶的是,矮化的 MdIAA29 过表达株系对盐和干旱胁迫的耐受性也有所增强。进一步分析表明,MdIAA29抑制了苹果中Gretchen Hagen 3.9(GH3.9)基因上的辅素反应因子4(ARF4)和9-顺式环氧类胡萝卜素二氧酶3(NCED3)基因的调控,改变了不同组织中辅素和脱落酸的含量,从而实现了植株高度和抗逆性之间的平衡。此外,我们还发现 MdIAA7 增强了 MdIAA29 对 MdARF4 的抑制作用。简而言之,MdIAA29-MdARF4 复合物对苹果植株的高度及其应对盐胁迫和干旱胁迫的能力有显著影响。
{"title":"The MdIAA29-MdARF4 complex plays an important role in balancing plant height with salt and drought stress responses.","authors":"Yingying Lei, Cui Chen, Wenjun Chen, Hongyan Dai","doi":"10.1093/plphys/kiae467","DOIUrl":"https://doi.org/10.1093/plphys/kiae467","url":null,"abstract":"<p><p>Breeding dwarf apple (Malus domestica) varieties is a recent trend in agriculture because such varieties are easy to maintain and have high yields; however, dwarf apple trees generally have poor stress tolerance. Balancing apple plant height and stress response has been an important breeding goal. In this study, aux/indole-3-acetic acid 29 gene in apple (MdIAA29) overexpression lines (#1, #2, #3) had reduced plant height by 39%, 31%, and 35%, respectively, suitable for close planting applications. Surprisingly, the dwarf MdIAA29-overexpression lines also showed increased plant tolerance to salt and drought stresses. Further analysis showed that MdIAA29 inhibited the regulation of auxin response factor 4 (ARF4) on Gretchen Hagen 3.9 (GH3.9) gene and 9-cis-epoxycarotenoid dioxygenase 3 (NCED3) gene in apple and changed the contents of auxin and abscisic acid in different tissues, thus achieving a balance between plant height and stress tolerance. In addition, we also found that MdIAA7 enhanced the inhibitory effect of MdIAA29 on MdARF4. In brief, the MdIAA29-MdARF4 complex significantly impacts the height of apple plants and their ability to respond to salt and drought stress.</p>","PeriodicalId":20101,"journal":{"name":"Plant Physiology","volume":null,"pages":null},"PeriodicalIF":6.5,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142126295","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Plant Physiology
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