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Chromosomal-scale genome assembly of parsnip (Pastinaca sativa) reveals genome evolution and carotenoid regulation. 欧洲防风草(Pastinaca sativa)染色体尺度基因组组装揭示了基因组进化和类胡萝卜素调控。
IF 7.4 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-20 DOI: 10.1093/plphys/kiag009
Ya-Hui Wang,Pei-Zhuo Liu,Yu-Jie Sun,Xue-Feng Peng,Xu Zhang,Zi-Han Zhao,Yang-Qin Xie,Fei Fang,Li-Xiang Wang,Ai-Sheng Xiong
Parsnip (Pastinaca sativa), which belongs to the Apiaceae family, is a nutritious root vegetable consumed worldwide. Here, we report a 1.52 Gb chromosomal-scale assembly of the parsnip genome anchored on 11 chromosomes with a scaffold N50 of 135.6 Mb and containing 51,156 protein-coding genes. A total of 90.63 % of the parsnip genome was composed of repetitive sequences, with transposon elements accounting for 84.07%. The continuous insertion of long terminal repeat (LTR) transposons led to the expansion of the parsnip genome, especially SIRE in LTR-Copia and Tekay in LTR-Gypsy. Whole genome duplication (WGD) and ancestral karyotype deduction revealed that chromosome variation was facilitated by the WGD events shared by Apiaceae species and has contributed to the diversity within Apiaceae. Transcriptome analyses, tissue structure observation, and enzyme activity assays suggested that ascorbate peroxidase gene (PsAPX) expression was significantly correlated with ascorbic acid content. Furthermore, we explored the contributions of the carotenoid pathway to lack of pigment accumulation in the parsnip root by comparing gene expression patterns during carotenogenesis and the roles of carotenoid cleavage dioxygenase (CCD) proteins. The results indicated potential insufficient substrate flow within the carotenoid biosynthesis pathway and the obstructive effect of several PsCCDs on lycopene and β-carotene accumulation. Our findings offer resources for fundamental research on parsnip and genomics-assisted breeding of parsnip with enhanced nutritional quality.
防风草(Pastinaca sativa),属于Apiaceae家族,是一种营养丰富的块根蔬菜。在这里,我们报道了一个1.52 Gb染色体尺度的防风草基因组组装,它锚定在11条染色体上,支架N50为135.6 Mb,包含51156个蛋白质编码基因。共90.63%的防风草基因组由重复序列组成,其中转座子元件占84.07%。长末端重复(LTR)转座子的连续插入导致防风草基因组的扩增,特别是LTR- copia中的SIRE和LTR- gypsy中的Tekay。全基因组重复(WGD)和祖先核型推断表明,染色体变异是由蜜蜂科物种共有的WGD事件促成的,并对蜜蜂科物种的多样性做出了贡献。转录组分析、组织结构观察和酶活性分析表明,抗坏血酸过氧化物酶基因(PsAPX)的表达与抗坏血酸含量显著相关。此外,我们通过比较类胡萝卜素裂解双加氧酶(CCD)蛋白在防风根色素积累过程中的基因表达模式和作用,探讨了类胡萝卜素途径对防风根色素积累缺乏的贡献。结果表明,在类胡萝卜素生物合成途径中潜在的底物流动不足,以及几种psccd对番茄红素和β-胡萝卜素积累的阻碍作用。研究结果为防风草的基础研究和防风草营养品质的基因组辅助育种提供了资源。
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引用次数: 0
PlEF1B-PlGATA5 module enhances stem strength by promoting syringyl lignin deposition in herbaceous peony. PlEF1B-PlGATA5模块通过促进芍药中紫丁香木质素的沉积来增强茎强。
IF 7.4 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-20 DOI: 10.1093/plphys/kiag016
Lili Lu,Yuhan Tang,Jun Tao,Daqiu Zhao
Stem bending or lodging caused by insufficient stem strength limits plant production. Although syringyl lignin (S-lignin) plays a crucial role in the formation of stem strength, its transcriptional regulatory network remains poorly characterized. In this study, we identified a nuclear-localized transcriptional activator, PlGATA5, from herbaceous peony (Paeonia lactiflora Pall.) that directly binds the WGATAR motif in the promoter of laccase 15 (PlLAC15) and activates its transcription. Moreover, silencing PlGATA5 in P. lactiflora resulted in decreased stem strength due to reduced S-lignin deposition, whereas PlGATA5 overexpression enhanced stem strength through enhanced S-lignin deposition. As revealed by yeast two-hybrid, bimolecular fluorescence complementation, and luciferase complementation imaging assays, the translation elongation factor PlEF1B physically interacts with PlGATA5, leading to enhanced transcriptional activation of PlGATA5 on PlLAC15 promoter activity. Additionally, silencing PlEF1B in P. lactiflora indicated that PlEF1B positively regulates stem strength by affecting S-lignin deposition and xylem width. These data support that the PlEF1B-PlGATA5 module directly activates PlLAC15 expression to enhance stem strength by promoting S-lignin deposition in P. lactiflora and provide important insights into stem strength regulation.
茎弯曲或倒伏造成的茎强度不足,限制了植物的生产。虽然丁香基木质素(S-lignin)在茎秆强度的形成中起着至关重要的作用,但其转录调控网络的特征仍然很低。在这项研究中,我们从芍药(Paeonia lactiflora Pall.)中鉴定了一个核定位的转录激活因子PlGATA5,它直接结合漆酶15启动子(PlLAC15)中的WGATAR基序并激活其转录。此外,在P. lactiflora中沉默PlGATA5会导致s -木质素沉积减少,从而导致茎强度降低,而过表达PlGATA5则会通过s -木质素沉积增强茎强度。酵母双杂交、双分子荧光互补和荧光素酶互补成像实验显示,翻译延伸因子PlEF1B与PlGATA5物理相互作用,导致PlGATA5对PlLAC15启动子活性的转录激活增强。此外,在P. lactiflora中沉默PlEF1B表明PlEF1B通过影响s -木质素沉积和木质部宽度积极调节茎强度。这些数据支持PlEF1B-PlGATA5模块直接激活PlLAC15表达,通过促进s -木质素沉积来增强P. lactiflora的茎秆强度,为茎秆强度调控提供了重要的见解。
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引用次数: 0
ACCUMULATION OF PHOTOSYSTEM ONE2 plays an essential role in chloroplast intron splicing during chloroplast biogenesis. 在叶绿体生物发生过程中,光系统ONE2的积累对叶绿体内含子剪接起着至关重要的作用。
IF 7.4 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-20 DOI: 10.1093/plphys/kiag014
Chu Zeng,Qingsong Jiao,Xuan Zhao,Ting Jia,Xueyun Hu
ACCUMULATION OF PHOTOSYSTEM ONE2 (APO2) is an essential protein for embryo development, yet its functional role remains largely unexplored. In this study, we generated inducible APO2 RNA interference (RNAi) lines to investigate the function of APO2. Upon induction, APO2-RNAi plants exhibited a yellow phenotype in newly emerging leaves, accompanied by defective chloroplast development. We demonstrated that APO2 localizes to chloroplasts and that APO2 is highly expressed in green leaves. Phylogenetic analysis of the APO protein family across land plants revealed that APO2 proteins cluster into a distinct clade separate from other APO family members. The splicing of several chloroplast introns was affected in APO2-RNAi-induced yellow leaves, with splicing efficiencies of the ycf3.1 and ndhA introns dramatically lower than those in green leaves. We determined that APO2 interacts with two splicing factors, Chloroplast RNA Splicing 2-associated Factor 1 (CAF1)/CAF2 and DEAD-box RNA helicase 3 (RH3), which are involved in group II intron splicing. Our results also revealed splicing deficiencies in both ycf3.1 and ndhA introns in RH3 co-suppression lines. Notably, both APO2 and RH3 directly bound the 5' region of ycf3.1. These results establish that APO2 is indispensable for chloroplast biogenesis, primarily due to its essential role in the splicing of chloroplast introns.
光系统ONE2 (APO2)的积累是胚胎发育所必需的蛋白质,但其功能作用仍未被充分研究。在这项研究中,我们建立了可诱导的APO2 RNA干扰(RNAi)系来研究APO2的功能。经诱导后,APO2-RNAi植物在新出的叶片中表现出黄色表型,并伴有叶绿体发育缺陷。我们证明了APO2定位于叶绿体,并且APO2在绿叶中高度表达。对陆地植物APO蛋白家族的系统发育分析表明,APO2蛋白与其他APO家族成员形成了一个独特的分支。apo2 - rnai诱导的黄叶叶绿体中多个内含子的剪接受到影响,其中ycf3.1和ndhA内含子的剪接效率显著低于绿叶。我们确定APO2与两个剪接因子,叶绿体RNA剪接2相关因子1 (CAF1)/CAF2和DEAD-box RNA解旋酶3 (RH3)相互作用,这两个剪接因子参与II组内含子剪接。我们的研究结果还揭示了在RH3共抑制系中ycf3.1和ndhA内含子的剪接缺陷。值得注意的是,APO2和RH3都直接结合了ycf3.1的5′区。这些结果表明,APO2在叶绿体生物发生中是必不可少的,主要是因为它在叶绿体内含子的剪接中起着重要作用。
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引用次数: 0
Proton channel inactivation results in loss of chloroplast NDH complex activity. 质子通道失活导致叶绿体NDH复合物活性的丧失。
IF 6.9 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-20 DOI: 10.1093/plphys/kiag010
Deserah D Strand, Stephanie Ruf, Omar Sandoval-Ibáñez, Ralph Bock

The physiological role of the plastidial photosynthetic complex I (formerly NAD(P)H dehydrogenase-like complex, NDH) within the electron transport chain of plants remains intriguing. While the NDH complex shares homology with complex I, a key component of the respiratory electron transport chain, electron transport rates through the NDH complex in thylakoids are relatively low. In this study, we used a structure-function approach and mutated the plastid genome-encoded ndhF gene to abolish the NdhF proton channel of the NDH complex. These mutations led to loss of plastoquinone reductase activity, indicating tight coupling between the proton and electron transfer reactions within NDH. Additionally, loss of the transverse helix of NdhF led to loss of the NDH complex, suggesting that this region of the NdhF subunit is required for complex stability. In agreement with previous studies using ndh knockout mutants, loss of NDH complex activity did not result in measurable changes in rates of steady-state cyclic electron flow. However, all mutants displayed a shift in the sensitivity of pH-dependent feedback regulation of the photosystem II antennae to total protonmotive force (pmf), indicating a possible defect in either stromal redox state or pmf distribution into ΔpH and Δψ.

叶绿体光合复合体I(原NAD(P)H脱氢酶样复合体,NDH)在植物电子传递链中的生理作用仍然很有趣。虽然NDH复合物与呼吸电子传递链的关键组分复合物I具有同源性,但在类囊体中通过NDH复合物的电子传递速率相对较低。在这项研究中,我们采用结构-功能方法,突变了质体基因组编码的ndhF基因,以消除NDH复合物的ndhF质子通道。这些突变导致质体醌还原酶活性丧失,表明NDH内质子和电子转移反应之间存在紧密耦合。此外,NdhF横螺旋的丢失导致NDH复合物的丢失,这表明NdhF亚基的这一区域对于复合物的稳定性是必需的。与先前使用ndh敲除突变体的研究一致,ndh复合物活性的丧失不会导致稳态循环电子流速率的可测量变化。然而,所有突变体都表现出光系统II天线的ph依赖性反馈调节对总质子动力(pmf)的敏感性发生了变化,这表明基质氧化还原状态或pmf分布到ΔpH和Δψ可能存在缺陷。
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引用次数: 0
Control of embryo size by inositol phosphate signaling revealed by big embryo mutants of maize. 玉米大胚突变体肌醇磷酸信号对胚大小的控制。
IF 6.9 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-19 DOI: 10.1093/plphys/kiag005
Masaharu Suzuki, Shan Wu, Yutaka Sato, Noah T Jones, Donald R McCarty

Inositol phosphates (InsP) play diverse signaling roles in regulating development, phosphate sensing, and energy metabolism. Here, we identify four maize (Zea mays) mutants, big embryo 2 (bige2), big embryo 3 (bige3), big embryo 4 (bige4), and low phytic acid 1 (lpa1), that show enlargement of the embryo at the expense of endosperm. Bige2 (identical to Lpa2), Bige3 (identical to Lpa3), and Bige4 genes encode inositol phosphate triphosphokinase (ITPK) and mono-inositol phosphate kinase (MIK), both of which catalyze lipid-independent InsP biosynthesis, and inositol polyphosphate kinase (IPK2) in the lipid-dependent InsP pathway, respectively. Lpa1 encodes a tonoplast InsP6 transporter. InsP pathway mutants primarily affect scutellum growth with each mutant exhibiting a distinct spatial pattern of cell enlargement and/or cell number. Genetic epistasis and transcriptome analyses reveal overlapping and non-redundant roles of lipid-independent and -dependent pathways in regulation of embryo development. Strikingly, ectopic expression of endosperm-specific genes in lpa2-bige2 and bige4 embryos reveals a shift toward endosperm organ identity. We identify a network of NAC transcription factors implicated in shaping lpa2-bige2 and bige4 transcriptomes. Disruption of lipid-independent InsP biosynthesis in lpa2-bige2 is associated with upregulation of a subnetwork of SOG1-related NAC proteins linked to DNA damage repair and endoreduplication. The lpa2-bige2 phenotype is fully suppressed by lpa1, suggesting that a block in InsP6 uptake into the vacuole restores signaling by cytosolic InsP intermediates. Together these results establish a genetic framework for dissecting complex roles of InsP signaling in seed development.

肌醇磷酸盐(insitol phosphate, InsP)在调节发育、磷酸盐感知和能量代谢中发挥多种信号作用。在这里,我们鉴定了四个玉米(Zea mays)突变体,大胚2 (bige2),大胚3 (bige3),大胚4 (bige4)和低植酸1 (lpa1),它们表现出以牺牲胚乳为代价的胚胎扩大。Bige2(与Lpa2相同)、Bige3(与Lpa3相同)和Bige4基因编码肌醇磷酸三磷酸激酶(ITPK)和单肌醇磷酸激酶(MIK),这两个基因分别催化脂质依赖性的InsP生物合成和肌醇多磷酸激酶(IPK2)。Lpa1编码细胞质InsP6转运蛋白。InsP途径突变体主要影响鳞片生长,每个突变体表现出不同的细胞增大和/或细胞数量的空间格局。遗传上位和转录组分析揭示了在胚胎发育调控中脂质独立和依赖途径的重叠和非冗余作用。引人注目的是,在lpa2-bige2和bige4胚胎中胚乳特异性基因的异位表达揭示了向胚乳器官身份的转变。我们发现了一个与形成lpa2-bige2和bige4转录组有关的NAC转录因子网络。lpa2-bige2中脂质非依赖性InsP生物合成的中断与sog1相关的NAC蛋白子网络的上调有关,该子网络与DNA损伤修复和内复制有关。lpa2-bige2表型被lpa1完全抑制,这表明液泡对InsP6摄取的阻断恢复了胞质中InsP中间体的信号传导。总之,这些结果为剖析InsP信号在种子发育中的复杂作用建立了一个遗传框架。
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引用次数: 0
FLOWERING LOCUS T1 is a pleiotropic regulator of reproductive development, longevity, and source–sink relations in barley 开花基因座T1是大麦生殖发育、寿命和源库关系的多效调控因子
IF 7.4 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-17 DOI: 10.1093/plphys/kiag015
Gesa Helmsorig, Tianyu Lan, Einar B Haraldsson, Thea Rütjes, Philipp Westhoff, Katrin Weber, Jochen Kumlehn, Götz Hensel, Rüdiger Simon, Maria von Korff
Source–sink interactions play a critical but mechanistically underexplored role in coordinating reproductive output and longevity in plants. Here, we investigated the role of FT1, the barley (Hordeum vulgare L.) homolog of the florigen FLOWERING LOCUS T (FT), in regulating source (leaf) and sink (inflorescence) development and metabolism. Using ft1 knock-out mutants in the spring barley cultivar Golden Promise, which carries a mutated PHOTOPERIOD 1 (ppd-H1) allele, and in an introgression line with a wild-type Ppd-H1 allele, we showed that Ppd-H1 primarily regulates the timing of inflorescence development and flowering through FT1. In contrast, variation in tiller number and leaf size was determined by the genetic background. ft1 mutants exhibited reduced determinacy of both leaf and inflorescence meristems, resulting in increased leaf and spikelet numbers and size, but severely reduced inflorescence fertility, altered senescence patterns, and significantly extended plant longevity. The ft1 mutants exhibited a strong transcriptional reprogramming of genes involved in both the light and dark reactions of photosynthesis in the leaf, alongside an upregulation of genes associated with carbon catabolism and stress responses in the leaf and inflorescence. Elevated soluble sugar and starch levels in ft1 inflorescences indicated that the impaired development and fertility of ft1 inflorescences were not caused by carbon limitation, but instead reflected a reduced sink strength. Our work reveals that FT1 coordinates the development of vegetative and reproductive meristems and organs with plant physiology and metabolism, thereby regulating source–sink relationships and balancing plant longevity with reproductive output.
源库相互作用在协调植物的生殖输出和寿命方面起着关键的作用,但在机制上尚未得到充分的探索。本文研究了花源开花位点T (FT)的同源基因FT1在调节源(叶)和汇(花序)发育和代谢中的作用。利用ft1敲除突变体在携带突变的PHOTOPERIOD 1 (ppd-H1)等位基因的春大麦品种Golden Promise和携带野生型ppd-H1等位基因的渗入系中,我们发现ppd-H1主要通过ft1调节花序发育和开花的时间。分蘖数和叶片大小的变异则由遗传背景决定。Ft1突变体表现出叶片和花序分生组织的确定性降低,导致叶片和小穗数量和大小增加,但严重降低了花序的育性,改变了衰老模式,并显著延长了植物的寿命。ft1突变体表现出与叶片光合作用的明暗反应相关的基因的转录重编程,以及与叶片和花序中碳分解代谢和应激反应相关的基因的上调。ft1花序中可溶性糖和淀粉含量的升高表明,ft1花序发育和肥力受损不是碳限制造成的,而是反映了碳汇强度的降低。我们的研究表明,FT1与植物生理和代谢协调营养和生殖分生组织和器官的发育,从而调节源库关系,平衡植物寿命和生殖输出。
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引用次数: 0
What Makes Parsnip Pale? Its First Genome Has Answers. 什么让防风草变白?它的第一个基因组找到了答案。
IF 7.4 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-16 DOI: 10.1093/plphys/kiag006
Neeta Lohani
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引用次数: 0
Phosphorylation of GhSKD1 by GhCIPK6D1 regulates potassium efflux during the drought response in cotton. GhSKD1被GhCIPK6D1磷酸化,调控棉花干旱响应过程中的钾外排。
IF 7.4 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-09 DOI: 10.1093/plphys/kiaf684
Weinan Sun,Dandan Yue,Linjie Xia,Shuo Hou,Xianlong Zhang,Xiyan Yang
The calcineurin B-like (CBL)-interacting protein kinase (CIPK) signaling network is the core regulatory node in the response to abiotic stress in plants; it regulates plant homeostasis by regulating various proteins mediating ion transport. However, there are few reports on CIPK-mediated ion transporters in the cotton (Gossypium hirsutum) response to drought stress. Through yeast two-hybrid assays, we identified SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT 1 (GhSKD1), which interacts with GhCIPK6D1. GhSKD1 was significantly up-regulated after drought stress, while GhSKD1 localized to the cell membrane and nucleus. Functional studies revealed that GhSKD1 positively regulates K+ efflux, thus enhancing drought tolerance in cotton. Genetic and biochemical evidence showed that the phosphorylation of GhSKD1 by GhCIPK6D1 mediates K+ influx in guard cells, thereby regulating stomatal aperture and drought tolerance in cotton. GhSKD1 represents a previously uncharacterized protein that mediates potassium ion transport during the drought stress response. This finding identifies another target of CIPK regulation in the CPL-CIPK signaling network and provides insights into the mechanisms of drought tolerance in plants.
钙调磷酸酶b样(CBL)相互作用蛋白激酶(CIPK)信号网络是植物应对非生物胁迫的核心调控节点;它通过调节各种介导离子转运的蛋白质来调节植物体内平衡。然而,关于cipk介导的离子转运体在棉花(棉)对干旱胁迫的响应中作用的报道很少。通过酵母双杂交实验,我们发现了与GhCIPK6D1相互作用的K+运输生长缺陷1 (GhSKD1)抑制子。干旱胁迫后,GhSKD1显著上调,定位于细胞膜和细胞核。功能研究表明,GhSKD1正调控K+外排,从而增强棉花的抗旱性。遗传和生化证据表明,GhCIPK6D1磷酸化GhSKD1介导K+在保护细胞内的内流,从而调节棉花气孔开度和抗旱性。GhSKD1是一种以前未被发现的蛋白质,在干旱胁迫反应中介导钾离子运输。这一发现确定了CPL-CIPK信号网络中CIPK调控的另一个目标,并为植物耐旱机制提供了见解。
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引用次数: 0
Transcriptome profiling reveals divergent response strategies in two olive cultivars with contrasting drought tolerance. 转录组分析揭示了两种橄榄品种在抗旱性上的不同反应策略。
IF 7.4 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-09 DOI: 10.1093/plphys/kiag001
Genoveva Carmen Martos de la Fuente,Amanda Bullones,Yordanis Pérez Llano,David Moreno González,Ramón A Batista-Garcia,M Gonzalo Claros,Noe Fernandez-Pozo,Ana María Fernández-Ocaña
Understanding the transcriptional mechanisms that distinguish drought-tolerant from drought-sensitive olive cultivars is essential for improving resilience to climate change. In this study, we compared transcriptomic profiles between two olive cultivars with markedly different drought responses: the highly sensitive 'Koroneiki' and the highly tolerant 'Martina'. Using RNA-Seq under moderate and severe drought conditions, we identified both shared and cultivar-specific transcriptional adjustments to water deficit. 'Koroneiki' displayed an early and broad upregulation of genes involved in cell wall biosynthesis, secondary metabolism, and antioxidant pathways, but failed to sustain efficient hormonal regulation or timely activation of the MAP kinase signaling cascade. In contrast, 'Martina' adopted an anticipatory and energy-conserving strategy, characterized by early downregulation of primary metabolism, enhanced ABA-mediated gene expression, and activation of dormancy-related pathways. Notably, key signaling nodes, such as MAP kinases, WRKY transcription factors, and ABA-GA crosstalk elements, exhibited divergent expression patterns between the two cultivars, suggesting differential engagement of regulatory networks. These findings reveal distinct transcriptomic strategies underlying drought adaptation in olive and identify 'Martina' as a promising genotype for breeding programs aimed at enhancing climate resilience. The results provide molecular markers and regulatory targets for improving drought tolerance in perennial crops.
了解区分耐旱和干旱敏感橄榄品种的转录机制对于提高对气候变化的适应能力至关重要。在这项研究中,我们比较了两种干旱反应明显不同的橄榄品种:高度敏感的Koroneiki和高度耐受的Martina的转录组谱。在中度和重度干旱条件下,利用RNA-Seq,我们确定了对水分亏缺的共同和特定品种的转录调节。“Koroneiki”表现出参与细胞壁生物合成、次级代谢和抗氧化途径的基因的早期和广泛上调,但未能维持有效的激素调节或及时激活MAP激酶信号级联。相比之下,“Martina”采用了一种预期和节能策略,其特点是早期下调初级代谢,增强aba介导的基因表达,激活休眠相关途径。值得注意的是,关键信号节点,如MAP激酶、WRKY转录因子和ABA-GA串扰元件,在两个品种之间表现出不同的表达模式,表明调控网络的不同参与。这些发现揭示了橄榄树干旱适应的不同转录组学策略,并确定“Martina”是一种有前途的基因型,用于旨在增强气候适应能力的育种计划。研究结果为提高多年生作物抗旱性提供了分子标记和调控靶点。
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引用次数: 0
PyHAT5 regulates anthocyanin biosynthesis in red-fleshed pear and undergoes ubiquitination and degradation by PyAIP2 PyHAT5调控红肉梨花青素的合成,并被PyAIP2泛素化和降解
IF 7.4 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2026-01-06 DOI: 10.1093/plphys/kiaf683
Guosong Chen, Yueyuan Liu, Jiaming Li, Kui Lin-Wang, Richard V Espley, Lester Brewer, Andrew C Allan, Guangyan Yang, Weilin Wei, Yongqi Zhao, Zhaolong Xue, Jun Wu
Red fruit flesh is a rare occurrence in pears (Pyrus spp.), yet it is an attractive trait as anthocyanin enrichment would add nutritional value and novelty for consumers. Previous research has focused on red-skinned phenotypes in pear fruit, but the potential regulatory mechanisms controlling red flesh remain unclear. Here, we identified the Homeodomain leucine zipper (HD-ZIP) family transcription factor PyHAT5 as a controlling factor using transcriptome analysis of pear fruit flesh at three different developmental stages in a hybrid population of red-fleshed and white-fleshed pears. The expression level of PyHAT5 was significantly negatively correlated (correlation coefficient of −0.94) with anthocyanin content in the flesh. Overexpression of PyHAT5 inhibited anthocyanin accumulation in pear tissues (skin and callus), peach (Prunus persica) flesh, and tobacco (Nicotiana tabacum) leaves, while virus-induced silencing of PyHAT5 promoted intense coloration of pear skin. Further analysis found that PyHAT5 protein interacts with PyMYB10, thereby blocking the formation and transcriptional activity of the PyMYB10-PybHLH3 complex. Additionally, we identified through yeast two-hybrid screening that an E3 ubiquitin ligase, PyAIP2, interacts with PyHAT5 and may promote its ubiquitination and degradation. Overexpression of PyAIP2 promoted anthocyanin biosynthesis in pear skin, while knockdown of PyAIP2 had the opposite effect. Our findings reveal a regulatory module, PyAIP2-PyHAT5-PyMYB10, that plays a critical role in regulating anthocyanin biosynthesis in red-fleshed pear. These findings also advance our understanding of the regulation of anthocyanin biosynthesis in other tissues and provide genetic knowledge for advancing breeding in pear.
红色果肉在梨(Pyrus spp.)中是罕见的,但它是一个有吸引力的特性,因为花青素的富集可以增加消费者的营养价值和新鲜感。以前的研究主要集中在梨果实的红皮表型上,但控制红皮的潜在调节机制尚不清楚。本研究通过对红肉和白肉杂交群体三个不同发育阶段的梨果肉转录组分析,确定了同源结构域亮氨酸拉链(HD-ZIP)家族转录因子PyHAT5为控制因子。PyHAT5的表达量与果肉中花青素含量呈显著负相关(相关系数为- 0.94)。PyHAT5的过表达抑制了梨组织(皮肤和愈伤组织)、桃(Prunus persica)果肉和烟草(Nicotiana tabacum)叶片中花青素的积累,而病毒诱导的PyHAT5沉默促进了梨皮的强烈着色。进一步分析发现PyHAT5蛋白与PyMYB10相互作用,从而阻断PyMYB10- pybhlh3复合物的形成和转录活性。此外,我们通过酵母双杂交筛选发现E3泛素连接酶PyAIP2与PyHAT5相互作用,并可能促进其泛素化和降解。PyAIP2的过表达促进了梨皮花青素的生物合成,而PyAIP2的下调则起到相反的作用。我们的研究结果揭示了一个调节模块PyAIP2-PyHAT5-PyMYB10在调节红肉梨花青素的生物合成中起关键作用。这些发现也促进了我们对其他组织中花青素生物合成调控的认识,并为推进梨的育种提供了遗传学知识。
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Plant Physiology
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