Pub Date : 2025-10-15DOI: 10.1016/j.soilbio.2025.110017
Xiaodong Wang, Lei Wang, Jiangpeng Ren, Lei Wang, Yue Tao, Ying Zhang
Particulate organic carbon (POC) and mineral-associated organic carbon (MAOC) are essential for improving soil organic carbon (SOC) accumulation and stability; however, their responses to straw incorporation remain unclear. To clarify these effects, we combined a meta-analysis with long-term straw incorporation experiments and found that straw incorporation significantly increased the POC (18.0 %) and MAOC (13.9 %), but the magnitude was regulated by nitrogen (N) availability. Specifically, increasing N availability alleviates the carbon-to-nitrogen ratio imbalance caused by straw incorporation and enhances carbon-acquiring enzyme activity, thereby promoting the transformation of straw into decomposed residues. In addition, under straw incorporation, increasing N availability enhances the production of glomalin-related soil proteins, which increases the mean weight diameter of aggregation and consequently promotes the accumulation of occluded particulate organic carbon (oPOC). This process effectively isolates POC from direct contact with microorganisms and enzymes, and ultimately facilitates POC accumulation. For MAOC, under straw incorporation, increasing N availability stimulates the growth of r-strategist microbes and enhances microbial carbon use efficiency, thereby increasing microbial necromass carbon production and resulting in more pronounced MAOC accumulation. Our findings reveal how N availability shapes the response of POC and MAOC to straw incorporation, with consequences for SOC accrual in cropland soils.
{"title":"Nitrogen availability regulates the effects of straw incorporation on soil organic carbon functional pools","authors":"Xiaodong Wang, Lei Wang, Jiangpeng Ren, Lei Wang, Yue Tao, Ying Zhang","doi":"10.1016/j.soilbio.2025.110017","DOIUrl":"10.1016/j.soilbio.2025.110017","url":null,"abstract":"<div><div>Particulate organic carbon (POC) and mineral-associated organic carbon (MAOC) are essential for improving soil organic carbon (SOC) accumulation and stability; however, their responses to straw incorporation remain unclear. To clarify these effects, we combined a meta-analysis with long-term straw incorporation experiments and found that straw incorporation significantly increased the POC (18.0 %) and MAOC (13.9 %), but the magnitude was regulated by nitrogen (N) availability. Specifically, increasing N availability alleviates the carbon-to-nitrogen ratio imbalance caused by straw incorporation and enhances carbon-acquiring enzyme activity, thereby promoting the transformation of straw into decomposed residues. In addition, under straw incorporation, increasing N availability enhances the production of glomalin-related soil proteins, which increases the mean weight diameter of aggregation and consequently promotes the accumulation of occluded particulate organic carbon (oPOC). This process effectively isolates POC from direct contact with microorganisms and enzymes, and ultimately facilitates POC accumulation. For MAOC, under straw incorporation, increasing N availability stimulates the growth of r-strategist microbes and enhances microbial carbon use efficiency, thereby increasing microbial necromass carbon production and resulting in more pronounced MAOC accumulation. Our findings reveal how N availability shapes the response of POC and MAOC to straw incorporation, with consequences for SOC accrual in cropland soils.</div></div>","PeriodicalId":21888,"journal":{"name":"Soil Biology & Biochemistry","volume":"212 ","pages":"Article 110017"},"PeriodicalIF":10.3,"publicationDate":"2025-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145288999","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-13DOI: 10.1016/j.soilbio.2025.110015
Jônatas Pedro da Silva , José João Lelis Leal de Souza , Deborah Pinheiro Dick , Rafael da Silva Teixeira , Emanuelle Mercês Barros Soares , Lucas Carvalho Gomes , Carlos Ernesto G.R. Schaefer
Understanding the biochemical composition and stabilization mechanisms of soil organic matter (SOM) is essential for assessing its persistence in rapidly changing polar environments. In this study, we investigated the molecular, elemental, and isotopic characteristics of SOM fractions—particulate (POM) and mineral-associated organic matter (MAOM)—in soils from the Byers Peninsula, Maritime Antarctica. Using δ13C and δ15N isotopic signatures, off-line TMAH thermochemolysis, solid-state 13C NMR spectroscopy, and thermogravimetric analysis (TGA), we identified key pathways of SOM stabilization and origin. Results revealed that lipid-derived compounds dominated both SOM fractions (39–96 %), with lignin detected exclusively in vascular plant residues and only marginally in MAOM. Isotopic signatures indicated multiple organic matter sources, including C3 plant biomass, marine inputs, ornithogenic deposits, and endolithic communities. Soils affected by cryoturbation and located on high and low platforms exhibited the highest carbon and nitrogen stocks, primarily stabilized in the MAOM fraction. Molecular analyses demonstrated significant variation in SOM composition across soil profiles. While most soils exhibited high proportions of labile O-alkyl C compounds, select profiles (notably P2 and P4) showed enriched aryl C and elevated thermostability, indicating advanced humification and greater molecular complexity. These findings highlight the central role of cryoturbation, hydrophobic interactions, and microbial-derived inputs in stabilizing SOM in the absence of lignin-rich vegetation. Overall, our integrated fingerprinting approach revealed that SOM persistence in Maritime Antarctica is governed by both physical protection (via MAOM) and biochemical resistance, offering critical insights into its potential response to ongoing climate-driven changes.
{"title":"Biochemical and molecular fingerprinting of soil organic matter fractions reveals diverse sources and stabilization mechanisms in Maritime Antarctica","authors":"Jônatas Pedro da Silva , José João Lelis Leal de Souza , Deborah Pinheiro Dick , Rafael da Silva Teixeira , Emanuelle Mercês Barros Soares , Lucas Carvalho Gomes , Carlos Ernesto G.R. Schaefer","doi":"10.1016/j.soilbio.2025.110015","DOIUrl":"10.1016/j.soilbio.2025.110015","url":null,"abstract":"<div><div>Understanding the biochemical composition and stabilization mechanisms of soil organic matter (SOM) is essential for assessing its persistence in rapidly changing polar environments. In this study, we investigated the molecular, elemental, and isotopic characteristics of SOM fractions—particulate (POM) and mineral-associated organic matter (MAOM)—in soils from the Byers Peninsula, Maritime Antarctica. Using δ<sup>13</sup>C and δ<sup>15</sup>N isotopic signatures, off-line TMAH thermochemolysis, solid-state <sup>13</sup>C NMR spectroscopy, and thermogravimetric analysis (TGA), we identified key pathways of SOM stabilization and origin. Results revealed that lipid-derived compounds dominated both SOM fractions (39–96 %), with lignin detected exclusively in vascular plant residues and only marginally in MAOM. Isotopic signatures indicated multiple organic matter sources, including C<sub>3</sub> plant biomass, marine inputs, ornithogenic deposits, and endolithic communities. Soils affected by cryoturbation and located on high and low platforms exhibited the highest carbon and nitrogen stocks, primarily stabilized in the MAOM fraction. Molecular analyses demonstrated significant variation in SOM composition across soil profiles. While most soils exhibited high proportions of labile O-alkyl C compounds, select profiles (notably P2 and P4) showed enriched aryl C and elevated thermostability, indicating advanced humification and greater molecular complexity. These findings highlight the central role of cryoturbation, hydrophobic interactions, and microbial-derived inputs in stabilizing SOM in the absence of lignin-rich vegetation. Overall, our integrated fingerprinting approach revealed that SOM persistence in Maritime Antarctica is governed by both physical protection (via MAOM) and biochemical resistance, offering critical insights into its potential response to ongoing climate-driven changes.</div></div>","PeriodicalId":21888,"journal":{"name":"Soil Biology & Biochemistry","volume":"212 ","pages":"Article 110015"},"PeriodicalIF":10.3,"publicationDate":"2025-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145283211","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-10DOI: 10.1016/j.soilbio.2025.110014
Marta E. Pérez-Villanueva , Stephanie D. Jurburg , Cédric Malandain , Nawras Ghanem , Antonis Chatzinotas
Soil protists play crucial roles in soil microbial food-webs by preying on bacteria and other microorganisms. However, the effect of protist diversity on soil prokaryotic communities remains poorly understood. This study aimed to elucidate how different protist diversity treatments affect the composition and functionality of soil prokaryotic communities. We established soil microcosms with increasingly complex protist communities, including a control without protists, a medium diversity treatment with three small bacterivorous protists, and a high diversity treatment with seven protists of diverse trophic styles and sizes. Over 21 days, we monitored changes in the prokaryotic community using 16S rRNA gene sequencing and assessed the effects on nitrifiers and denitrifiers by qPCR of nitrogen-cycling genes. Protist diversity explained 23 % of the observed prokaryotic community differentiation over time, with the high-diversity treatment causing the greatest divergence from the control. The most abundant prokaryotes were preferentially preyed upon in all protist treatments. Unexpectedly, the absolute abundance of the nirK gene, which is widely distributed among bacterial taxa and thus associated with high functional redundancy, decreased. The differential response of genes with lower distribution and redundancy, such as the bacterial and archaeal amoA and the Nitrospira-associated nxrB genes, to protist diversity indicated selective predation on archaea. High protist diversity systematically enhanced these effects compared to the medium diversity treatment. Overall, protist diversity was positively associated with prokaryotic diversity, which is crucial for maintaining ecosystem stability. These findings highlight the critical role of protist diversity and likely complementary predation in shaping soil prokaryotic communities and their functioning, and open up new avenues to explore how this role may differ across soil types.
{"title":"Soil protist diversity enhances prokaryotic diversity, and regulates dominant prokaryotes and the abundance of key nitrogen cycling genes","authors":"Marta E. Pérez-Villanueva , Stephanie D. Jurburg , Cédric Malandain , Nawras Ghanem , Antonis Chatzinotas","doi":"10.1016/j.soilbio.2025.110014","DOIUrl":"10.1016/j.soilbio.2025.110014","url":null,"abstract":"<div><div>Soil protists play crucial roles in soil microbial food-webs by preying on bacteria and other microorganisms. However, the effect of protist diversity on soil prokaryotic communities remains poorly understood. This study aimed to elucidate how different protist diversity treatments affect the composition and functionality of soil prokaryotic communities. We established soil microcosms with increasingly complex protist communities, including a control without protists, a medium diversity treatment with three small bacterivorous protists, and a high diversity treatment with seven protists of diverse trophic styles and sizes. Over 21 days, we monitored changes in the prokaryotic community using 16S rRNA gene sequencing and assessed the effects on nitrifiers and denitrifiers by qPCR of nitrogen-cycling genes. Protist diversity explained 23 % of the observed prokaryotic community differentiation over time, with the high-diversity treatment causing the greatest divergence from the control. The most abundant prokaryotes were preferentially preyed upon in all protist treatments. Unexpectedly, the absolute abundance of the <em>nirK</em> gene, which is widely distributed among bacterial taxa and thus associated with high functional redundancy, decreased. The differential response of genes with lower distribution and redundancy, such as the bacterial and archaeal <em>amoA</em> and the <em>Nitrospira</em>-associated <em>nxrB</em> genes, to protist diversity indicated selective predation on archaea. High protist diversity systematically enhanced these effects compared to the medium diversity treatment. Overall, protist diversity was positively associated with prokaryotic diversity, which is crucial for maintaining ecosystem stability. These findings highlight the critical role of protist diversity and likely complementary predation in shaping soil prokaryotic communities and their functioning, and open up new avenues to explore how this role may differ across soil types.</div></div>","PeriodicalId":21888,"journal":{"name":"Soil Biology & Biochemistry","volume":"212 ","pages":"Article 110014"},"PeriodicalIF":10.3,"publicationDate":"2025-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145261009","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-09DOI: 10.1016/j.soilbio.2025.110012
Martin Škerlep , Melissa Reidy , Hjalmar Laudon , Ryan A. Sponseller
Organic-rich riparian soils in northern boreal landscapes are often the primary source of organic and inorganic carbon (C) to headwater streams. During extreme hydro-climatic events, such as droughts, the production and mobilization of C in these soils may be sensitive to changes in groundwater levels. Yet, the biogeochemical effects of drying and rewetting have been under-investigated in boreal riparian zones, particularly when compared to peat soils in discrete landscape components (i.e., mires). Here, we experimentally assess the response of riparian soil cores to simulated drought and rewetting and test whether mobilization of dissolved organic matter (DOM), carbon dioxide (CO2), and methane (CH4) are altered by geochemical and biological drivers over a two-month rewetting period. Drought oxidized the soil profile, upregulated activities of oxidative enzymes, and replenished terminal electron acceptors (TEAs), most notably sulfate (SO42−), which likely suppressed DOM concentrations over the short term. However, over the longer term, soil DOM mobilization increased in response to rewetting, unrelated to the intensity of experimental drought. Enzyme activity during the rewetting phase indicates that the persistent increases in DOM may be linked to microbially-mediated decomposition of organic matter following drought. By contrast, CO2 production was sensitive to drought intensity, with concentrations suppressed in soils subjected to the most extreme drying treatment. Elevated SO42− concentrations also delayed the recovery of CH4 production in soils by creating a pool of more favorable TEAs. Our results collectively show that mobilization of different C forms in riparian soils is influenced by drying-rewetting events through multiple biogeochemical mechanisms operating at different time scales. These findings have broader implications for the lateral transfer of organic and inorganic C from riparian zones to streams in response to predicted increases in climate variability.
{"title":"Biogeochemical response to drying-rewetting in riparian soils influences carbon mobilization","authors":"Martin Škerlep , Melissa Reidy , Hjalmar Laudon , Ryan A. Sponseller","doi":"10.1016/j.soilbio.2025.110012","DOIUrl":"10.1016/j.soilbio.2025.110012","url":null,"abstract":"<div><div>Organic-rich riparian soils in northern boreal landscapes are often the primary source of organic and inorganic carbon (C) to headwater streams. During extreme hydro-climatic events, such as droughts, the production and mobilization of C in these soils may be sensitive to changes in groundwater levels. Yet, the biogeochemical effects of drying and rewetting have been under-investigated in boreal riparian zones, particularly when compared to peat soils in discrete landscape components (i.e., mires). Here, we experimentally assess the response of riparian soil cores to simulated drought and rewetting and test whether mobilization of dissolved organic matter (DOM), carbon dioxide (CO<sub>2</sub>), and methane (CH<sub>4</sub>) are altered by geochemical and biological drivers over a two-month rewetting period. Drought oxidized the soil profile, upregulated activities of oxidative enzymes, and replenished terminal electron acceptors (TEAs), most notably sulfate (SO<sub>4</sub><sup>2−</sup>), which likely suppressed DOM concentrations over the short term. However, over the longer term, soil DOM mobilization increased in response to rewetting, unrelated to the intensity of experimental drought. Enzyme activity during the rewetting phase indicates that the persistent increases in DOM may be linked to microbially-mediated decomposition of organic matter following drought. By contrast, CO<sub>2</sub> production was sensitive to drought intensity, with concentrations suppressed in soils subjected to the most extreme drying treatment. Elevated SO<sub>4</sub><sup>2−</sup> concentrations also delayed the recovery of CH<sub>4</sub> production in soils by creating a pool of more favorable TEAs. Our results collectively show that mobilization of different C forms in riparian soils is influenced by drying-rewetting events through multiple biogeochemical mechanisms operating at different time scales. These findings have broader implications for the lateral transfer of organic and inorganic C from riparian zones to streams in response to predicted increases in climate variability.</div></div>","PeriodicalId":21888,"journal":{"name":"Soil Biology & Biochemistry","volume":"212 ","pages":"Article 110012"},"PeriodicalIF":10.3,"publicationDate":"2025-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145247585","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Microbial-derived carbon plays a crucial role in mitigating climate change by forming stable carbon components through the soil microbial carbon pump. However, related studies have ignored the contribution of extracellular polymeric substances (EPS) as microbial extracellular metabolites to soil organic carbon (SOC), particularly in deeper soils. This study explored the distribution of EPS in six typical soil profiles (0–120 cm) from two parent materials (limestone and shale) and three land use types (dryland, woodland, and paddy land). The contribution of microbial biomass carbon (MBC) to SOC was significantly higher than that of EPS-carbon (EPS-C) in surface soils (0–40 cm), while EPS-C constituted a larger proportion in deeper soils (80–120 cm). The EPS accumulation efficiency (EPS-protein/MBC and EPS-polysaccharide/MBC) gradually increased with soil depth. This accumulation was strongly correlated with the abundance of g_Zixibacteria, g_Zavarzinella, g_Xylohypha, g_Xanthothecium, and g_Xanthagaricus. Data analysis revealed that β-glucosidase (BG) activity and total nitrogen (TN) content had significant negative effects on the EPS/SOC ratio. Additionally, extracellular enzyme analyses confirmed that low nitrogen availability in deeper soils enhanced the EPS accumulation efficiency, thereby increasing the EPS-C/SOC ratio along the soil profile. Overall, this study provides new insights into the composition of deep soil carbon pools and highlights the important role of EPS in deep soil carbon storage.
{"title":"Increased microbial extracellular polymeric substances as a key factor in deep soil organic carbon accumulation","authors":"Mengxi Feng , Ming Zhang , Peng Cai , Yichao Wu , Qingling Fu , Xin Zhang , Fei Miao , Wen Xing , Shuiqing Chen , Ke-Qing Xiao , Yong-Guan Zhu","doi":"10.1016/j.soilbio.2025.109998","DOIUrl":"10.1016/j.soilbio.2025.109998","url":null,"abstract":"<div><div>Microbial-derived carbon plays a crucial role in mitigating climate change by forming stable carbon components through the soil microbial carbon pump. However, related studies have ignored the contribution of extracellular polymeric substances (EPS) as microbial extracellular metabolites to soil organic carbon (SOC), particularly in deeper soils. This study explored the distribution of EPS in six typical soil profiles (0–120 cm) from two parent materials (limestone and shale) and three land use types (dryland, woodland, and paddy land). The contribution of microbial biomass carbon (MBC) to SOC was significantly higher than that of EPS-carbon (EPS-C) in surface soils (0–40 cm), while EPS-C constituted a larger proportion in deeper soils (80–120 cm). The EPS accumulation efficiency (EPS-protein/MBC and EPS-polysaccharide/MBC) gradually increased with soil depth. This accumulation was strongly correlated with the abundance of <em>g_Zixibacteria</em>, <em>g_Zavarzinella</em>, <em>g_Xylohypha</em>, <em>g_Xanthothecium</em>, and <em>g_Xanthagaricus</em>. Data analysis revealed that β-glucosidase (BG) activity and total nitrogen (TN) content had significant negative effects on the EPS/SOC ratio. Additionally, extracellular enzyme analyses confirmed that low nitrogen availability in deeper soils enhanced the EPS accumulation efficiency, thereby increasing the EPS-C/SOC ratio along the soil profile. Overall, this study provides new insights into the composition of deep soil carbon pools and highlights the important role of EPS in deep soil carbon storage.</div></div>","PeriodicalId":21888,"journal":{"name":"Soil Biology & Biochemistry","volume":"212 ","pages":"Article 109998"},"PeriodicalIF":10.3,"publicationDate":"2025-10-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145229988","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-06DOI: 10.1016/j.soilbio.2025.110003
Riku Maltari , Aino Seppänen , Kajsa Roslund , Kristiina Karhu
Soil microbial necromass analysis through measurement of soil amino sugars is a common technique in soil science. Traditionally, the measurement is performed by aldononitrile acetate derivatization and gas chromatographic (GC) analysis. Long pretreatment times and high limits of quantification (LOQ) have led to the development of faster and more sensitive high performance liquid chromatography (HPLC) methods. In this study, we enhanced a previously discovered ortho-phthalaldehyde derivatization and HPLC separation method for soil samples by converting it to work with ultra-high performance liquid chromatography (UHPLC) column and equipment. We also added an internal standard to control for pretreatment variation. In addition, we explored the factors that must be optimized to establish the method with alternative equipment, and the differences in the results between the UHPLC and the GC methods. We found that the UHPLC method produced similar results to the GC methods with glucosamine and galactosamine, while the performance of the UHPLC method was significantly better in determining muramic acid, especially at low concentrations. Mannosamine results were not correlated between the methods. The speed of the UHPLC analysis was much higher and LOQ much lower compared to the GC method. In the majority of soil samples (13 out of 18), muramic acid concentrations were found to be below LOQ for the GC method, but clearly detectable with the developed UHPLC method. It was found that the UHPLC method is at least twice as fast as the GC method and requires only few of the hazardous chemicals traditionally used in amino sugar analysis. The UHPLC method also improved on the HPLC method by consuming only 1/5th of the total solvent and by reducing analysis time from 30 to 18 min.
{"title":"Modified fast UHPLC method for quantification of soil amino sugars – improved sensitivity compared to the GC method","authors":"Riku Maltari , Aino Seppänen , Kajsa Roslund , Kristiina Karhu","doi":"10.1016/j.soilbio.2025.110003","DOIUrl":"10.1016/j.soilbio.2025.110003","url":null,"abstract":"<div><div>Soil microbial necromass analysis through measurement of soil amino sugars is a common technique in soil science. Traditionally, the measurement is performed by aldononitrile acetate derivatization and gas chromatographic (GC) analysis. Long pretreatment times and high limits of quantification (LOQ) have led to the development of faster and more sensitive high performance liquid chromatography (HPLC) methods. In this study, we enhanced a previously discovered <em>ortho</em>-phthalaldehyde derivatization and HPLC separation method for soil samples by converting it to work with ultra-high performance liquid chromatography (UHPLC) column and equipment. We also added an internal standard to control for pretreatment variation. In addition, we explored the factors that must be optimized to establish the method with alternative equipment, and the differences in the results between the UHPLC and the GC methods. We found that the UHPLC method produced similar results to the GC methods with glucosamine and galactosamine, while the performance of the UHPLC method was significantly better in determining muramic acid, especially at low concentrations. Mannosamine results were not correlated between the methods. The speed of the UHPLC analysis was much higher and LOQ much lower compared to the GC method. In the majority of soil samples (13 out of 18), muramic acid concentrations were found to be below LOQ for the GC method, but clearly detectable with the developed UHPLC method. It was found that the UHPLC method is at least twice as fast as the GC method and requires only few of the hazardous chemicals traditionally used in amino sugar analysis. The UHPLC method also improved on the HPLC method by consuming only 1/5th of the total solvent and by reducing analysis time from 30 to 18 min.</div></div>","PeriodicalId":21888,"journal":{"name":"Soil Biology & Biochemistry","volume":"212 ","pages":"Article 110003"},"PeriodicalIF":10.3,"publicationDate":"2025-10-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145229459","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-06DOI: 10.1016/j.soilbio.2025.110002
Andrew T. Nottingham , Kristiina Karhu , Norma Salinas , Jörg Schnecker , Outi-Maaria Sietiö , Angela K. Martin-Vivanco , Wolfgang Wanek , Patrick Meir
The growth and death of soil microbes are important drivers of soil carbon formation. A warming climate is predicted to affect both the production of microbial biomass and the stability of microbial residues (necromass) held in soils. However, we have very little information on how warming in tropical soils will affect these processes, and on the effect of temperature on microbial production and turnover over different time-scales. To address this, we studied temperature effects on microbial-mediated C cycling across two different time-scales, using a 20 °C mean annual temperature gradient in the Peruvian Andes (long-term effects) and decadal experimental-warming via soil translocation (11-years of temperature effects). At long-term timescales, a legacy of warmer temperatures decreased microbial carbon use efficiency (CUE), microbial biomass C, and decreased fungal and bacterial necromass concentration in soils. At decadal timescales, experimental warming increased CUE, microbial production and microbial biomass concentration (likely the result of concomitant changes in substrate availability). However, this did not translate into increased microbial necromass concentration, which generally declined with warming across all temporal scales. Together, we show that warmer temperatures over decadal (11-year) timescales affect soil microbial processes to potentially increase their C input to soil (increased CUE, microbial production, and biomass) but we find no evidence that this C became stabilized as the necromass C pool decreased. Our results indicate that warming can alter microbial community metabolism to potentially increase necromass C inputs to soil, although we find no evidence to show that this offset overall soil C loss with warming.
{"title":"Microbial death in the Andes: necromass declines despite growth and carbon-use-efficiency increases with decadal soil warming","authors":"Andrew T. Nottingham , Kristiina Karhu , Norma Salinas , Jörg Schnecker , Outi-Maaria Sietiö , Angela K. Martin-Vivanco , Wolfgang Wanek , Patrick Meir","doi":"10.1016/j.soilbio.2025.110002","DOIUrl":"10.1016/j.soilbio.2025.110002","url":null,"abstract":"<div><div>The growth and death of soil microbes are important drivers of soil carbon formation. A warming climate is predicted to affect both the production of microbial biomass and the stability of microbial residues (necromass) held in soils. However, we have very little information on how warming in tropical soils will affect these processes, and on the effect of temperature on microbial production and turnover over different time-scales. To address this, we studied temperature effects on microbial-mediated C cycling across two different time-scales, using a 20 °C mean annual temperature gradient in the Peruvian Andes (long-term effects) and decadal experimental-warming via soil translocation (11-years of temperature effects). At long-term timescales, a legacy of warmer temperatures decreased microbial carbon use efficiency (CUE), microbial biomass C, and decreased fungal and bacterial necromass concentration in soils. At decadal timescales, experimental warming increased CUE, microbial production and microbial biomass concentration (likely the result of concomitant changes in substrate availability). However, this did not translate into increased microbial necromass concentration, which generally declined with warming across all temporal scales. Together, we show that warmer temperatures over decadal (11-year) timescales affect soil microbial processes to potentially increase their C input to soil (increased CUE, microbial production, and biomass) but we find no evidence that this C became stabilized as the necromass C pool decreased. Our results indicate that warming can alter microbial community metabolism to potentially increase necromass C inputs to soil, although we find no evidence to show that this offset overall soil C loss with warming.</div></div>","PeriodicalId":21888,"journal":{"name":"Soil Biology & Biochemistry","volume":"213 ","pages":"Article 110002"},"PeriodicalIF":10.3,"publicationDate":"2025-10-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145241483","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-04DOI: 10.1016/j.soilbio.2025.109994
Eliana Di Lodovico , Shiyue Yang , Hauke Harms , Maximilian Meyer , Christian Fricke , Gabriele E. Schaumann , Thomas Maskow
Soil, as the largest terrestrial carbon sink, plays a pivotal role in the global carbon cycle. Soil microorganisms are fundamental to all biochemical processes in soil, ensuring its fertility and supporting a balanced ecosystem. Through their metabolic activities, these microorganisms drive energy and matter flows, mineralizing organic matter and releasing heat and CO2, which can be measured via calorespirometry. A key limitation of conventional calorimeters lies in their inability to combine high sample throughput with sufficiently large sample sizes while avoiding oxygen limitation during measurement. In order to overcome these weaknesses, we have developed a multi-channel macrocalorespirometer (CR-12) for soil analysis. To demonstrate its application, agricultural soil (Dikopshof, Luvisol) amended with 12C (unlabeled) and 13C (labeled) glucose was used in four experiments. Comparisons with commercial isothermal microcalorimeters confirmed the suitability of CR-12 for soil systems, providing reliable heat, CO2 measurements and calorespirometric ratios that align with known ranges for the aerobic turnover of carbohydrates. To further investigate the incorporation of carbon into the soil organic matter (SOM), a time series of soil samples amended with 13C-labeled glucose was subjected to mass spectrometric analysis (m/z 44 for 12C–CO2; m/z 45 for 13C–CO2) using thermogravimetry-differential scanning calorimetry-quadrupole mass spectrometry (TG-DSC-QMS). The integration of calorespirometric and mass spectrometric data demonstrated that combining these complementary techniques provides more detailed information on the fate of microbial carbon and energy turnover within SOM.
{"title":"Soil microbial metabolism: Insights from heat, CO2 emission and isotope analysis using a novel macrocalorespirometer","authors":"Eliana Di Lodovico , Shiyue Yang , Hauke Harms , Maximilian Meyer , Christian Fricke , Gabriele E. Schaumann , Thomas Maskow","doi":"10.1016/j.soilbio.2025.109994","DOIUrl":"10.1016/j.soilbio.2025.109994","url":null,"abstract":"<div><div>Soil, as the largest terrestrial carbon sink, plays a pivotal role in the global carbon cycle. Soil microorganisms are fundamental to all biochemical processes in soil, ensuring its fertility and supporting a balanced ecosystem. Through their metabolic activities, these microorganisms drive energy and matter flows, mineralizing organic matter and releasing heat and CO<sub>2</sub>, which can be measured via calorespirometry. A key limitation of conventional calorimeters lies in their inability to combine high sample throughput with sufficiently large sample sizes while avoiding oxygen limitation during measurement. In order to overcome these weaknesses, we have developed a multi-channel macrocalorespirometer (CR-12) for soil analysis. To demonstrate its application, agricultural soil (Dikopshof, Luvisol) amended with <sup>12</sup>C (unlabeled) and <sup>13</sup>C (labeled) glucose was used in four experiments. Comparisons with commercial isothermal microcalorimeters confirmed the suitability of CR-12 for soil systems, providing reliable heat, CO<sub>2</sub> measurements and calorespirometric ratios that align with known ranges for the aerobic turnover of carbohydrates. To further investigate the incorporation of carbon into the soil organic matter (SOM), a time series of soil samples amended with <sup>13</sup>C-labeled glucose was subjected to mass spectrometric analysis (m/z 44 for <sup>12</sup>C–CO<sub>2</sub>; m/z 45 for <sup>13</sup>C–CO<sub>2</sub>) using thermogravimetry-differential scanning calorimetry-quadrupole mass spectrometry (TG-DSC-QMS). The integration of calorespirometric and mass spectrometric data demonstrated that combining these complementary techniques provides more detailed information on the fate of microbial carbon and energy turnover within SOM.</div></div>","PeriodicalId":21888,"journal":{"name":"Soil Biology & Biochemistry","volume":"212 ","pages":"Article 109994"},"PeriodicalIF":10.3,"publicationDate":"2025-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145226709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-04DOI: 10.1016/j.soilbio.2025.110000
Lang C. DeLancey , Qian Zhao , Adrienne B. Keller , Christopher A. Walter , Kirsten S. Hofmockel , Melanie A. Mayes , Eric W. Seabloom , Elizabeth T. Borer , Andrew D.B. Leakey , Sarah E. Hobbie
Previous work has found that anthropogenic inputs of nitrogen (N) and phosphorus (P) impact heterotrophic respiration during soil organic matter decomposition in grasslands, a critical pathway through which carbon (C) is lost from soil to the atmosphere. While N addition typically reduces heterotrophic respiration, why the strength and direction of this N effect varies among sites is unclear. To address this, we conducted a 339-day laboratory incubation to measure heterotrophic respiration from nine grasslands across North America that have received 10 years of factorial N and P fertilization. N addition reduced cumulative respiration most at sites with low pH, low microbial allocation towards N acquisition, and high soil C concentration and availability. However, N addition had neutral rather than positive effects on heterotrophic respiration in sites with high pH and decomposer allocation towards N acquisition. Across sites, a decade of N addition reduced heterotrophic respiration by ∼24 %, driven by reductions in microbial biomass. Heterotrophic respiration was less sensitive to P addition, despite its increasing microbial biomass. However, simultaneous N and P addition did ameliorate negative N effects. These results show that previously observed variation in the response of heterotrophic respiration to N addition can be explained by soil C availability and pH status, widely measured factors which can be used to predict how grassland C fluxes may change under continuing nutrient deposition.
{"title":"Carbon availability, soil pH, and microbial allocation to nitrogen acquisition shape grassland heterotrophic respiration in response to a decade of nitrogen addition","authors":"Lang C. DeLancey , Qian Zhao , Adrienne B. Keller , Christopher A. Walter , Kirsten S. Hofmockel , Melanie A. Mayes , Eric W. Seabloom , Elizabeth T. Borer , Andrew D.B. Leakey , Sarah E. Hobbie","doi":"10.1016/j.soilbio.2025.110000","DOIUrl":"10.1016/j.soilbio.2025.110000","url":null,"abstract":"<div><div>Previous work has found that anthropogenic inputs of nitrogen (N) and phosphorus (P) impact heterotrophic respiration during soil organic matter decomposition in grasslands, a critical pathway through which carbon (C) is lost from soil to the atmosphere. While N addition typically reduces heterotrophic respiration, why the strength and direction of this N effect varies among sites is unclear. To address this, we conducted a 339-day laboratory incubation to measure heterotrophic respiration from nine grasslands across North America that have received 10 years of factorial N and P fertilization. N addition reduced cumulative respiration most at sites with low pH, low microbial allocation towards N acquisition, and high soil C concentration and availability. However, N addition had neutral rather than positive effects on heterotrophic respiration in sites with high pH and decomposer allocation towards N acquisition. Across sites, a decade of N addition reduced heterotrophic respiration by ∼24 %, driven by reductions in microbial biomass. Heterotrophic respiration was less sensitive to P addition, despite its increasing microbial biomass. However, simultaneous N and P addition did ameliorate negative N effects. These results show that previously observed variation in the response of heterotrophic respiration to N addition can be explained by soil C availability and pH status, widely measured factors which can be used to predict how grassland C fluxes may change under continuing nutrient deposition.</div></div>","PeriodicalId":21888,"journal":{"name":"Soil Biology & Biochemistry","volume":"212 ","pages":"Article 110000"},"PeriodicalIF":10.3,"publicationDate":"2025-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145216184","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-03DOI: 10.1016/j.soilbio.2025.109997
Lisa Maggioli , Sonia Chamizo , Raúl Román , Emilio Rodríguez-Caballero , Beatriz Roncero-Ramos , Yolanda Cantón
Organic amendments and microbial inoculants are widely applied to improve soil properties. However, their combined application remains underexplored in both soil restoration and sustainable agriculture. This study explores the synergistic potential of paper waste and biocrust-forming cyanobacteria as a combined strategy to enhance soil functions in drylands. Specifically, we assessed (i) whether paper waste can support long-term cyanobacterial survival and establishment in soil, and (ii) the effects of their combined application on soil functions and microbial community structure. In a mesocosm experiment, two forms of paper waste, shredded paper and paper pulp, were applied alone or with a native cyanobacterial consortium to natural and agricultural soils. Results showed that cyanobacteria remained viable on paper waste for three months. Redundancy Analysis (RDA) revealed strong association between treatments and shifts in key indicators of soil functions. The combination of paper waste and cyanobacteria significantly improved SOC (up to 979 %), total nitrogen (30 %), aggregate stability (500 %), and water retention (86 %), compared to untreated soil. A complementary field experiment confirmed this synergism and revealed partial inoculum transfer to the underlying soil, resulting in increased chlorophyll-a, aggregate stability and nitrogen concentration. Functional potential predictions of microbial communities (PICRUSt2 and FungalTraits) indicated that microbial taxa most strongly related to nutrient changes following amendment were linked to nutrient cycling pathways, particularly carbon and nitrogen metabolism. Despite functional shifts, occurring mainly in the paper layer, overall soil microbial diversity and nutrient balance were preserved, supporting this strategy as a sustainable tool for enhancing key soil functions in drylands.
{"title":"Restoring dryland soils functionality through synergism between biocrust-forming cyanobacteria and paper waste amendment","authors":"Lisa Maggioli , Sonia Chamizo , Raúl Román , Emilio Rodríguez-Caballero , Beatriz Roncero-Ramos , Yolanda Cantón","doi":"10.1016/j.soilbio.2025.109997","DOIUrl":"10.1016/j.soilbio.2025.109997","url":null,"abstract":"<div><div>Organic amendments and microbial inoculants are widely applied to improve soil properties. However, their combined application remains underexplored in both soil restoration and sustainable agriculture. This study explores the synergistic potential of paper waste and biocrust-forming cyanobacteria as a combined strategy to enhance soil functions in drylands. Specifically, we assessed (i) whether paper waste can support long-term cyanobacterial survival and establishment in soil, and (ii) the effects of their combined application on soil functions and microbial community structure. In a mesocosm experiment, two forms of paper waste, shredded paper and paper pulp, were applied alone or with a native cyanobacterial consortium to natural and agricultural soils. Results showed that cyanobacteria remained viable on paper waste for three months. Redundancy Analysis (RDA) revealed strong association between treatments and shifts in key indicators of soil functions. The combination of paper waste and cyanobacteria significantly improved SOC (up to 979 %), total nitrogen (30 %), aggregate stability (500 %), and water retention (86 %), compared to untreated soil. A complementary field experiment confirmed this synergism and revealed partial inoculum transfer to the underlying soil, resulting in increased chlorophyll-<em>a</em>, aggregate stability and nitrogen concentration. Functional potential predictions of microbial communities (PICRUSt2 and FungalTraits) indicated that microbial taxa most strongly related to nutrient changes following amendment were linked to nutrient cycling pathways, particularly carbon and nitrogen metabolism. Despite functional shifts, occurring mainly in the paper layer, overall soil microbial diversity and nutrient balance were preserved, supporting this strategy as a sustainable tool for enhancing key soil functions in drylands.</div></div>","PeriodicalId":21888,"journal":{"name":"Soil Biology & Biochemistry","volume":"211 ","pages":"Article 109997"},"PeriodicalIF":10.3,"publicationDate":"2025-10-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145209815","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}