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Accessible and Generalizable in Vitro Luminescence Assay for Detecting GPCR Activation 用于检测GPCR激活的可接近和可推广的体外发光测定。
Q3 Chemistry Pub Date : 2023-07-07 DOI: 10.1021/acsmeasuresciau.3c00021
Ruby M. Miller, Jennifer Sescil, Marina C. Sarcinella, Ryan C. Bailey and Wenjing Wang*, 

G protein-coupled receptors (GPCRs) serve critical physiological roles as the most abundant family of receptors. Here, we describe the design of a generalizable and cell lysate-based method that leverages the interaction between an agonist-activated GPCR and a conformation-specific binder to reconstitute split nanoluciferase (NanoLuc) in vitro. This tool, In vitro GPCR split NanoLuc ligand Triggered Reporter (IGNiTR), has broad applications. We have demonstrated IGNiTR’s use with three Gs-coupled GPCRs, two Gi-coupled GPCRs and three classes of conformation-specific binders: nanobodies, miniG proteins, and G protein peptidomimetics. As an in vitro method, IGNiTR enables the use of synthetic G protein peptidomimetics and provides easily scalable and portable reagents for characterizing GPCRs and ligands. We tested three diverse applications of IGNiTR: (1) proof-of-concept GPCR ligand screening using dopamine receptor D1 IGNiTR; (2) detection of opioids for point-of-care testing; and (3) characterizing GPCR functionality during Nanodisc-based reconstitution processes. Due to IGNiTR’s unique advantages and the convenience of its cell lysate-based format, this tool will find extensive applications in GPCR ligand detection, screening, and GPCR characterization.

G蛋白偶联受体(GPCR)是最丰富的受体家族,具有重要的生理作用。在这里,我们描述了一种可推广的基于细胞裂解物的方法的设计,该方法利用激动剂激活的GPCR和构象特异性粘合剂之间的相互作用,在体外重建分裂的纳米萤光素酶(NanoLuc)。该工具,体外GPCR分裂NanoLuc配体触发报告器(IGNiTR),具有广泛的应用。我们已经证明了IGNiTR与三种Gs偶联的GPCR、两种Gi偶联的GPCr和三类构象特异性粘合剂的用途:纳米体、miniG蛋白和G蛋白肽模拟物。作为一种体外方法,IGNiTR能够使用合成的G蛋白肽模拟物,并为表征GPCR和配体提供易于扩展和便携式的试剂。我们测试了IGNiTR的三种不同应用:(1)使用多巴胺受体D1 IGNiTR进行概念验证GPCR配体筛选;(2) 检测用于护理点检测的阿片类药物;和(3)表征基于纳米盘的重构过程中的GPCR功能。由于IGNiTR的独特优势及其基于细胞裂解物的格式的便利性,该工具将在GPCR配体检测、筛选和GPCR表征中得到广泛应用。
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引用次数: 0
Change Is the Only Constant: A Virtual Issue on Contemporary Catalysis 变化是唯一不变的:当代催化的一个虚拟问题
Q3 Chemistry Pub Date : 2023-06-27 DOI: 10.1021/acsmeasuresciau.3c00023
Shelley Minteer*, Stephanie L. Brock*, Géraldine Masson* and Raymond E. Schaak*, 
C are now critical in all areas of chemistry, from biochemistry to synthesis to energy to biomedical devices. It is perhaps not surprising then that the ACS Au community journals have published a wealth of exciting content in the area of catalysis. From among these publications, we have chosen to highlight a few examples in this virtual issue to demonstrate the excellence and diversity of these contributions and the field, as representations of catalysis in the early 2020s. Heterogeneous catalysis has been critical in improving modern life and environmental technologies, from the Haber− Bosch process, to the catalytic converter for cars, to upgrading chemicals. For example, 5-hydroxymethylfurfural (HMF) and levulinic acids can be upgraded to HMF levulinate for biorefining (10.1021/acsorginorgau.2c00027). Recent efforts have focused on designing catalysts to increase product selectivity and sustainability (10.1021/acsnanoscienceau.2c00057). There is a wealth of work on the conversion of carbon dioxide into fuels and value-added products, e.g., cyclic carbonate (10.1021/acsmaterialsau.1c00012), and the abatement of other greenhouse gases like methane (10.1021/ acsenvironau.1c00034). Researchers are also studying the development of heterogeneous catalysts for renewable fuel production, e.g., jet fuel via hydrodeoxygenation (10.1021/ acsengineeringau.2c00015). Challenges in managing omnipresent polymer waste have motivated research on nextgeneration heterogeneous catalysts for chemical recycling of, e.g., PET (10.1021/acsengineeringau.2c00029). Recently, zeolite and zeolite-supported catalysts have become popular for applications such as diesel oxidation (10.1021/acsengineeringau.1c00016) and ethene dimerization (10.1021/acsengineeringau.1c00014). It is important to note that although many of these new catalysts are focused on moving the chemical and fuel industry toward better sustainability, there is also a wealth of effort in making the catalysts themselves more sustainable by moving to catalysts made from earth abundant elements instead of precious metals. Homogeneous catalysts are integral to the chemical, polymer, and pharmaceutical industries. These catalysts are used to both increase reaction rates and improve selectivity. In the polymer field, researchers have designed organometallic catalysts for making hyperbranched ethylene oligomers and ethylene/methyl acrylate co-oligomers (10.1021/acspolymersau.1c00039) and have studied borate cocatalysts for ethylene copolymerization (10.1021/acsorginorgau.2c00020). In the pharmaceutical area, researchers have been interested in biscyclometalated chiral-at-iridium/rhodium complexes for asymmetric catalysis in organic synthesis (10.1021/acsorginorgau.1c00032). Researchers have also been studying trinuclear complexes enabling more efficient C−C bond-forming transformations (10.1021/acsorginorgau.2c00029). Recently, organocatalysts have also become popular, including the use of diphenylprolinol silyl eth
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引用次数: 0
Methods for Tomographic Segmentation in Pseudo-Cylindrical Coordinates for Bobbin-Type Batteries 筒式电池伪柱坐标层析分割方法
Q3 Chemistry Pub Date : 2023-06-21 DOI: 10.1021/acsmeasuresciau.3c00015
Dominick P. Guida, Alyssa M. Stavola, Andrew Chihpin Chuang, John S. Okasinski, Matthew T. Wendling, Xiaotong H. Chadderdon and Joshua W. Gallaway*, 

High-resolution X-ray computed tomography (CT) has become an invaluable tool in battery research for its ability to probe phase distributions in sealed samples. The Cartesian coordinates used in describing the CT image stack are not appropriate for understanding radial dependencies, like that seen in bobbin-type batteries. The most prominent of these bobbin-type batteries is alkaline Zn–MnO2, which dominates the primary battery market. To understand material radial dependencies within these batteries, a method is presented to approximate the Cartesian coordinates of CT data into pseudo-cylindrical coordinates. This is important because radial volume fractions are the output of computational battery models, and this will allow the correlation of a battery model to CT data. A selection of 10 anodes inside Zn–MnO2 AA batteries are used to demonstrate the method. For these, the pseudo-radius is defined as the relative distance in the anode between the central current collecting pin and the separator. Using these anodes, we validate that this method results in averaged one-dimensional material profiles that, when compared to other methods, show a better quantitative match to individual local slices of the anodes in the polar θ-direction. The other methods tested are methods that average to an absolute center point based on either the pin or the separator. The pseudo-cylindrical method also corrects for slight asymmetries observed in bobbin-type batteries because the pin is often slightly off-center and the separator often has a noncircular shape.

高分辨率x射线计算机断层扫描(CT)已经成为电池研究的宝贵工具,因为它能够探测密封样品中的相分布。用于描述CT图像堆栈的笛卡尔坐标不适合理解径向依赖关系,就像在线轴型电池中看到的那样。这些筒式电池中最突出的是碱性锌- mno2,它主导了一次电池市场。为了了解这些电池中的材料径向依赖关系,提出了一种将CT数据的笛卡尔坐标近似为伪柱坐标的方法。这很重要,因为径向体积分数是计算电池模型的输出,这将允许电池模型与CT数据的相关性。选择锌-二氧化锰AA电池内部的10个阳极来演示该方法。对于这些,伪半径被定义为在阳极中心集流引脚和分离器之间的相对距离。使用这些阳极,我们验证了这种方法产生的平均一维材料轮廓,与其他方法相比,在极性θ-方向上显示出与阳极的单个局部切片更好的定量匹配。测试的其他方法是基于引脚或分离器平均到绝对中心点的方法。伪圆柱形方法还纠正了在筒式电池中观察到的轻微不对称,因为引脚通常稍微偏离中心,分离器通常具有非圆形形状。
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引用次数: 0
Disposable Device for Bacterial Vaginosis Detection 一次性细菌性阴道病检测装置
Q3 Chemistry Pub Date : 2023-06-17 DOI: 10.1021/acsmeasuresciau.3c00007
Mariana D. Avila-Huerta, Karina Leyva-Hidalgo, Karen Cortés-Sarabia, Ana K. Estrada-Moreno, Amalia Vences-Velázquez and Eden Morales-Narváez*, 

Due to the increasing demand for clinical testing of infectious diseases at the point-of-care, the global market claims alternatives for rapid diagnosis tools such as disposable biosensors, avoiding the need for specialized laboratories and skilled personnel. Bacterial vaginosis (BV) is an infectious disease that commonly affects reproductive-age women and predisposes the infection of sexually transmitted diseases. Especially in asymptomatic cases, BV can lead to pelvic inflammatory conditions, postpartum endometritis, and preterm labor. Conventionally, BV diagnosis involves the microscopic analysis of vaginal swab samples; it thus requires highly trained personnel. In response, we report a novel microfluidic paper-based analytical device for BV diagnosis. Sialidase, a biomarker overexpressed in BV, was detected by exploiting an immunosensing mechanism previously discovered by our team. This technology employs a graphene oxide-coated surface as a quencher of fluorescence; the fluorescence of the immunoprobes that do not experiment immunoreactions (antibody–antigen) are deactivated by graphene oxide via non-radiative energy transfer, whereas those immunoprobes undergoing immunoreactions preserve their photoluminescence due to the distance and the low affinity between the immunocomplex and the graphene oxide-coated surface. Our paper-based test was typically carried out within 20 min, and the sample volume was 6 μL. Besides, it was tested with 14 vaginal swabs specimens to discriminate clinical samples of women with normal microbiota from those with BV. Our disposable device represents a new tool to prevent the consequences of BV.

由于在护理点对传染病进行临床检测的需求不断增加,全球市场要求提供诸如一次性生物传感器等快速诊断工具的替代品,从而避免了对专门实验室和熟练人员的需要。细菌性阴道病(BV)是一种常见于育龄妇女的传染病,易感染性传播疾病。特别是在无症状的情况下,细菌性阴道炎可导致盆腔炎、产后子宫内膜炎和早产。传统上,细菌性阴道炎的诊断包括阴道拭子样本的显微镜分析;因此,它需要训练有素的人员。为此,我们报道了一种新型的基于微流体纸的BV诊断分析装置。唾液酸酶是BV中过表达的一种生物标志物,通过利用我们团队先前发现的免疫传感机制进行检测。该技术采用氧化石墨烯涂层表面作为荧光猝灭剂;未进行免疫反应(抗体-抗原)的免疫探针的荧光通过非辐射能量转移被氧化石墨烯灭活,而进行免疫反应的免疫探针由于免疫复合物与氧化石墨烯涂层表面之间的距离和低亲和力而保持其光致发光。我们的纸质检测一般在20分钟内完成,进样量为6 μL。此外,对14例阴道拭子标本进行了检测,以区分微生物群正常的妇女和细菌性阴道炎患者的临床样本。我们的一次性设备代表了一种新的工具,以防止BV的后果。
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引用次数: 0
AFM-IR for Nanoscale Chemical Characterization in Life Sciences: Recent Developments and Future Directions AFM-IR在生命科学中的纳米级化学表征:最新进展和未来方向
Q3 Chemistry Pub Date : 2023-06-16 DOI: 10.1021/acsmeasuresciau.3c00010
A. Catarina V. D. dos Santos, Nikolaus Hondl, Victoria Ramos-Garcia, Julia Kuligowski, Bernhard Lendl and Georg Ramer*, 

Despite the ubiquitous absorption of mid-infrared (IR) radiation by virtually all molecules that belong to the major biomolecules groups (proteins, lipids, carbohydrates, nucleic acids), the application of conventional IR microscopy to the life sciences remained somewhat limited, due to the restrictions on spatial resolution imposed by the diffraction limit (in the order of several micrometers). This issue is addressed by AFM-IR, a scanning probe-based technique that allows for chemical analysis at the nanoscale with resolutions down to 10 nm and thus has the potential to contribute to the investigation of nano and microscale biological processes. In this perspective, in addition to a concise description of the working principles and operating modes of AFM-IR, we present and evaluate the latest key applications of AFM-IR to the life sciences, summarizing what the technique has to offer to this field. Furthermore, we discuss the most relevant current limitations and point out potential future developments and areas for further application for fruitful interdisciplinary collaboration.

尽管几乎所有属于主要生物分子群(蛋白质、脂类、碳水化合物、核酸)的分子都普遍吸收中红外(IR)辐射,但由于衍射极限(以几微米为顺序)对空间分辨率的限制,传统红外显微镜在生命科学中的应用仍然受到一定的限制。AFM-IR解决了这个问题,AFM-IR是一种基于扫描探针的技术,允许在纳米尺度上进行化学分析,分辨率低至10纳米,因此有可能有助于纳米和微尺度生物过程的研究。从这个角度来看,除了简要描述AFM-IR的工作原理和工作模式外,我们还介绍和评估了AFM-IR在生命科学中的最新关键应用,总结了该技术对该领域的贡献。此外,我们讨论了当前最相关的局限性,并指出了潜在的未来发展和进一步应用的领域,以实现卓有成效的跨学科合作。
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引用次数: 0
Colorimetric Signal Readout for the Detection of Volatile Organic Compounds Using a Printable Glass-Based Dielectric Barrier Discharge-Type Helium Plasma Detector 使用可印刷玻璃基介电阻挡放电型氦等离子体探测器检测挥发性有机化合物的比色信号读出
Q3 Chemistry Pub Date : 2023-05-30 DOI: 10.1021/acsmeasuresciau.3c00012
Jingqin Mao, Longze Liu, Yahya Atwa, Junming Hou, Zhenxun Wu and Hamza Shakeel*, 

In this paper, we report on a printable glass-based manufacturing method and a new proof-of-concept colorimetric signal readout scheme for a dielectric barrier discharge (DBD)-type helium plasma photoionization detector. The sensor consists of a millimeter-sized glass chamber manufactured using a printable glass suspension. Plasma inside the chip is generated using a custom-built power supply (900 V and 83.6 kHz), and the detector uses ∼5 W of power. Our new detection scheme is based on detecting the change in the color of plasma after the introduction of target gases. The change in color is first captured by a smartphone camera as a video output. The recorded video is then processed and converted to an image light intensity vs retention time plot (gas chromatogram) using three standard color space models (red, green, blue (RGB), hue, saturation, lightness (HSL), and hue, saturation, value (HSV)) with RGB performing the best among the three models. We successfully detected three different categories of volatile organic compounds using our new detection scheme and a 30-m-long gas chromatography column: (1) straight-chain alkanes (n-pentane, n-hexane, n-heptane, n-octane, and n-nonane), (2) aromatics (benzene, toluene, and ethylbenzene), and (3) polar compounds (acetone, ethanol, and dichloromethane). The best limit of detection of 10 ng was achieved for benzene at room temperature. Additionally, the device showed excellent performance for different types of sample mixtures consisting of three and five compounds. Our new detector readout method combined with our ability to print complex glass structures provides a new research avenue to analyze complex gas mixtures and their components.

在本文中,我们报道了一种基于可打印玻璃的制造方法和一种用于介质阻挡放电(DBD)型氦等离子体光电离检测器的新的概念验证比色信号读出方案。传感器由一个毫米大小的玻璃室组成,该玻璃室使用可打印的玻璃悬浮液制造。芯片内部的等离子体是使用定制的电源(900 V和83.6 kHz)产生的,探测器使用~5 W的功率。我们的新检测方案是基于检测引入目标气体后等离子体颜色的变化。颜色的变化首先由智能手机摄像头捕捉到,作为视频输出。然后,使用三个标准颜色空间模型(红、绿、蓝(RGB)、色调、饱和度、亮度(HSL)和色调、饱和度和值(HSV))处理记录的视频并将其转换为图像光强度与保留时间的关系图(气相色谱图),其中RGB在这三个模型中表现最好。我们使用新的检测方案和30米长的气相色谱柱成功检测了三种不同类别的挥发性有机化合物:(1)直链烷烃(正戊烷、正己烷、正庚烷、正辛烷和正壬烷),(2)芳烃(苯、甲苯和乙苯),以及(3)极性化合物(丙酮、乙醇和二氯甲烷)。苯在室温下的最佳检测限为10ng。此外,该装置对由三种和五种化合物组成的不同类型的样品混合物表现出优异的性能。我们新的探测器读出方法与我们打印复杂玻璃结构的能力相结合,为分析复杂气体混合物及其成分提供了一条新的研究途径。
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引用次数: 1
A Versatile and Easy Method to Calibrate a Two-Compartment Flow Cell for Differential Electrochemical Mass Spectrometry Measurements 一个通用的和简单的方法来校准一个双室流动电池的微分电化学质谱测量
Q3 Chemistry Pub Date : 2023-05-19 DOI: 10.1021/acsmeasuresciau.3c00009
Christoph J. Bondue, Marc T. M. Koper and Kristina Tschulik*, 

Online techniques for the quantitative analysis of reaction products have many advantages over offline methods. However, owing to the low product formation rates in electrochemical reactions, few of these techniques can be coupled to electrochemistry. An exception is differential electrochemical mass spectrometry (DEMS), which gains increasing popularity not least because of its high time resolution in the sub-second regime. DEMS is often combined with a dual thin-layer cell (a two-compartment flow cell), which helps to mitigate a number of problems that arise due to the existence of a vacuum|electrolyte interface. However, the efficiency with which this cell transfers volatile reaction products into the vacuum of the mass spectrometer is far below 100%. Therefore, a calibration constant that considers not only the sensitivity of the DEMS setup but also the transfer efficiency of the dual thin-layer cell is needed to translate the signals observed in the mass spectrometer into electrochemical product formation rates. However, it can be challenging or impossible to design an experiment that yields such a calibration constant. Here, we show that the transfer efficiency of the dual thin-layer cell depends on the diffusion coefficient of the analyte. Based on this observation, we suggest a two-point calibration method. That is, a plot of the logarithm of the transfer efficiencies determined for H2 and O2 versus the logarithm of their diffusion coefficients defines a straight line. Extrapolation of this line to the diffusion coefficient of another analyte yields a good estimate of its transfer efficiency. This is a versatile and easy calibration method, because the transfer efficiencies of H2 and O2 are readily accessible for a large range of electrode–electrolyte combinations.

用于反应产物定量分析的在线技术比离线方法具有许多优点。然而,由于电化学反应中产物形成率低,这些技术很少能与电化学结合。微分电化学质谱法(DEMS)是一个例外,它越来越受欢迎,尤其是因为它在亚秒范围内的高时间分辨率。DEMS通常与双薄层电池(双室流动电池)相结合,这有助于缓解由于真空电解质界面的存在而出现的许多问题。然而,该池将挥发性反应产物转移到质谱仪的真空中的效率远低于100%。因此,需要一个不仅考虑DEMS设置的灵敏度,还考虑双薄层电池的转移效率的校准常数,以将质谱仪中观察到的信号转化为电化学产物形成速率。然而,设计一个产生这样一个校准常数的实验可能具有挑战性或不可能。在这里,我们证明了双薄层细胞的转移效率取决于分析物的扩散系数。基于这一观察结果,我们提出了一种两点校准方法。也就是说,为H2和O2确定的转移效率的对数与它们的扩散系数的对数的关系图定义了一条直线。将这条线外推到另一种分析物的扩散系数可以很好地估计其转移效率。这是一种通用且简单的校准方法,因为H2和O2的转移效率对于大范围的电极-电解质组合来说很容易获得。
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引用次数: 1
Strategies for Overcoming the Single-Molecule Concentration Barrier 克服单分子浓度障碍的策略。
Q3 Chemistry Pub Date : 2023-05-09 DOI: 10.1021/acsmeasuresciau.3c00002
David S. White, Mackinsey A. Smith, Baron Chanda and Randall H. Goldsmith*, 

Fluorescence-based single-molecule approaches have helped revolutionize our understanding of chemical and biological mechanisms. Unfortunately, these methods are only suitable at low concentrations of fluorescent molecules so that single fluorescent species of interest can be successfully resolved beyond background signal. The application of these techniques has therefore been limited to high-affinity interactions despite most biological and chemical processes occurring at much higher reactant concentrations. Fortunately, recent methodological advances have demonstrated that this concentration barrier can indeed be broken, with techniques reaching concentrations as high as 1 mM. The goal of this Review is to discuss the challenges in performing single-molecule fluorescence techniques at high-concentration, offer applications in both biology and chemistry, and highlight the major milestones that shatter the concentration barrier. We also hope to inspire the widespread use of these techniques so we can begin exploring the new physical phenomena lying beyond this barrier.

基于荧光的单分子方法有助于彻底改变我们对化学和生物机制的理解。不幸的是,这些方法只适用于低浓度的荧光分子,因此感兴趣的单个荧光物种可以成功地分辨出背景信号之外的荧光。因此,尽管大多数生物和化学过程发生在高得多的反应物浓度下,但这些技术的应用仅限于高亲和力相互作用。幸运的是,最近的方法学进展表明,这种浓度屏障确实可以被打破,技术浓度高达1mM。这篇综述的目标是讨论在高浓度下进行单分子荧光技术的挑战,在生物学和化学中提供应用,并强调打破注意力障碍的主要里程碑。我们还希望激发这些技术的广泛应用,以便我们能够开始探索超越这一障碍的新物理现象。
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引用次数: 2
Correction to “Why and How Savitzky–Golay Filters Should Be Replaced” 更正“为什么以及如何更换Savitzky-Golay过滤器”
Q3 Chemistry Pub Date : 2023-05-04 DOI: 10.1021/acsmeasuresciau.3c00017
Michael Schmid*, David Rath and Ulrike Diebold, 
[This corrects the article DOI: 10.1021/acsmeasuresciau.1c00054.].
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引用次数: 0
Calculation of Tissue Oxygenation via an Inverse Boundary Problem for Transcutaneous Oxygenation Wearable Applications 基于反边界问题的经皮氧合可穿戴应用组织氧合计算
Q3 Chemistry Pub Date : 2023-05-02 DOI: 10.1021/acsmeasuresciau.3c00013
Juan Pedro Cascales*, Adina E. Draghici, Helen Keshishian, J. Andrew Taylor and Conor L. Evans*, 

In this article, we present a toolset to fully leverage a previously developed transcutaneous oxygenation monitor (TCOM) wearable technology to accurately measure skin oxygenation values. We describe numerical models and experimental characterization techniques that allow for the extraction of precise tissue oxygenation measurements. The numerical model is based on an inverse boundary problem of the parabolic equation with Dirichlet boundary conditions. To validate this model and characterize the diffusion of oxygen through the oxygen sensing materials, we designed a series of control/calibration experiments modeled after the device’s clinical application using oxygenation values in the physiological range expected for healthy tissue. Our results demonstrate that it is possible to obtain accurate tissue pO2 measurements without the need for long equilibration times with a small wearable device.

在这篇文章中,我们提出了一个工具集,以充分利用先前开发的经皮氧合监测仪(TCOM)可穿戴技术来准确测量皮肤氧合值。我们描述了允许提取精确组织氧合测量值的数值模型和实验表征技术。该数值模型基于具有狄利克雷边界条件的抛物型方程的逆边界问题。为了验证该模型并表征氧气通过氧气传感材料的扩散,我们根据该设备的临床应用设计了一系列控制/校准实验,使用健康组织预期生理范围内的氧合值。我们的结果表明,在不需要使用小型可穿戴设备长时间平衡的情况下,可以获得准确的组织pO2测量值。
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引用次数: 1
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