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Microfluidic Molecular Communication Transmitter Based on Hydrodynamic Gating 基于流体动力门控的微流控分子通信发射器
IF 2.2 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC Pub Date : 2024-02-01 DOI: 10.1109/TMBMC.2024.3361443
Iman Mokari Bolhassan;Ali Abdali;Murat Kuscu
Molecular Communications (MC) is a bio-inspired paradigm for transmitting information using chemical signals, which can enable novel applications at the junction of biotechnology, nanotechnology, and information and communication technologies. However, designing efficient and reliable MC systems poses significant challenges due to the complex nature of the physical channel and the limitations of the micro/nanoscale transmitter and receiver devices. In this paper, we propose a practical microfluidic transmitter architecture for MC based on hydrodynamic gating, a widely utilized technique for generating chemical waveforms in microfluidic channels with high spatiotemporal resolution. We develop an approximate analytical model that can capture the fundamental characteristics of the generated molecular pulses, such as pulse width, pulse amplitude, and pulse delay, as functions of main system parameters, such as flow velocity and gating duration. We validate the accuracy of our model by comparing it with finite element simulations using COMSOL Multiphysics under various system settings. Our analytical model can enable the optimization of microfluidic transmitters for MC applications in terms of minimizing intersymbol interference and maximizing data transmission rate.
分子通信(MC)是一种利用化学信号传输信息的生物启发范式,可在生物技术、纳米技术以及信息和通信技术的交界处实现新的应用。然而,由于物理信道的复杂性以及微/纳米级发射器和接收器设备的局限性,设计高效可靠的 MC 系统面临着巨大挑战。在本文中,我们提出了一种基于流体动力门控的实用微流控发射器架构,这是一种广泛应用于在微流控通道中产生高时空分辨率化学波形的技术。我们建立了一个近似分析模型,该模型可以捕捉到所产生的分子脉冲的基本特征,如脉冲宽度、脉冲幅度和脉冲延迟,这些都是主要系统参数(如流速和选通持续时间)的函数。我们将模型与 COMSOL Multiphysics 在各种系统设置下进行的有限元模拟进行了比较,从而验证了模型的准确性。我们的分析模型可以帮助优化微流控应用中的微流控发射器,从而最大限度地减少符号间干扰和提高数据传输速率。
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引用次数: 0
Signal Detection of Cooperative Multi-Hop Mobile Molecular Communication via Diffusion 通过扩散实现多跳移动分子协同通信的信号检测
IF 2.2 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC Pub Date : 2024-01-30 DOI: 10.1109/TMBMC.2024.3360341
Zhen Cheng;Zhichao Zhang;Jie Sun
The data-driven detectors based on deep learning have promising applications in signal detection with unknown channel parameters of molecular communication via diffusion (MCvD) system. In this paper, a signal detector for cooperative multi-hop mobile MCvD system with amplify-forward relaying strategy by using Transformer-based model is proposed. The mathematical expressions of the numbers of received molecules when considering two transmission schemes including multi-molecule-type (MMT) and single-molecule-type (SMT) are derived in order to generate the training dataset. On this basis, the training dataset is used to train the Transformer-based model offline. Then the trained Transformer-based model is adopted to detect the received signal under unknown channel parameters under MMT and SMT. Numerical results show that the Transformer-based model performs the best detection ability in cooperative multi-hop mobile MCvD system with lowest bit error rate of signal detection compared with deep neural networks (DNN) detector and convolutional neural networks (CNN) detector.
基于深度学习的数据驱动检测器在具有未知信道参数的分子扩散通信(MCvD)系统信号检测中有着广阔的应用前景。本文提出了一种基于变压器模型的信号检测器,用于采用放大-前向中继策略的合作多跳移动 MCvD 系统。在考虑多分子型(MMT)和单分子型(SMT)两种传输方案时,得出接收分子数的数学表达式,从而生成训练数据集。在此基础上,利用训练数据集离线训练基于 Transformer 的模型。然后,在 MMT 和 SMT 条件下,采用训练好的基于变换器的模型来检测未知信道参数下的接收信号。数值结果表明,与深度神经网络(DNN)检测器和卷积神经网络(CNN)检测器相比,基于变换器的模型在合作多跳移动 MCvD 系统中的检测能力最强,信号检测误码率最低。
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引用次数: 0
Design and Analysis of a Through-Body Signal Transmission System Based on Human Oxygen Saturation Detection 基于人体氧饱和度检测的全身信号传输系统的设计与分析
IF 2.2 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC Pub Date : 2024-01-02 DOI: 10.1109/TMBMC.2023.3349326
Chengyi Zhang;Hao Yan;Qiang Liu;Kun Yang;Fuqiang Liu;Lin Lin
For a long time, people have carried out various studies on molecular communication (MC) and the Internet of Bio-Nanothings (IoBNT) in order to realize biomedical applications inside the human body. However, how to realize the communication between these applications and the outside body has become a new problem. In general, different components in the blood have different light absorption rates. Based on this, we propose a new through-body communication method. The nanomachine in the blood vessel transmits signals by releasing certain substances that can influence blood oxygen saturation. The change in blood oxygen saturation can be detected by an outside body device measuring the attenuation of the light through the blood. The framework of the entire communication system is proposed and mathematically modeled. Its error performance is discussed and evaluated. The mutual information (MI) of the designed communication system is also derived and calculated. This research will contribute to the realization of the connection of the IoBNT inside the human body to the outside device.
长期以来,人们对分子通信(MC)和生物纳米互联网(IoBNT)进行了各种研究,以实现人体内的生物医学应用。然而,如何实现这些应用与体外的通信成为一个新问题。一般来说,血液中的不同成分具有不同的光吸收率。基于此,我们提出了一种新的体内通信方法。血管中的纳米机械通过释放某些能影响血氧饱和度的物质来传递信号。血氧饱和度的变化可以通过体外装置测量光在血液中的衰减来检测。我们提出了整个通信系统的框架,并对其进行了数学建模。对其误差性能进行了讨论和评估。还推导和计算了所设计通信系统的互信息(MI)。这项研究将有助于实现人体内 IoBNT 与外部设备的连接。
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引用次数: 0
2023 Index IEEE Transactions on Molecular, Biological, and Multi-Scale Communications Vol.9 2023 索引 IEEE 分子、生物和多尺度通信论文集第 9 卷
IF 2.2 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC Pub Date : 2023-12-22 DOI: 10.1109/TMBMC.2023.3345590
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引用次数: 0
Received Signal and Channel Parameter Estimation in Molecular Communications 分子通信中的接收信号和信道参数估计
IF 2.2 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC Pub Date : 2023-12-22 DOI: 10.1109/TMBMC.2023.3342731
O. Tansel Baydas;Ozgur B. Akan
Molecular communication (MC) is a paradigm that employs molecules as information carriers, hence, requiring unconventional transceivers and detection techniques for the Internet of Bio-Nano Things (IoBNT). In this study, we provide a novel MC model that incorporates a spherical transmitter and receiver with partial absorption. This model offers a more realistic representation than receiver architectures in literature, e.g., passive or entirely absorbing configurations. An optimization-based technique utilizing particle swarm optimization (PSO) is employed to accurately estimate the cumulative number of molecules received. This technique yields nearly constant correction parameters and demonstrates a significant improvement of 5 times in terms of root mean square error (RMSE) compared to the literature. The estimated channel model provides an approximate analytical impulse response; hence, it is used for estimating channel parameters such as distance, diffusion coefficient, or a combination of both. The iterative maximum likelihood estimation (MLE) is applied for the parameter estimation, which gives consistent errors compared to the estimated Cramer-Rao Lower Bound (CLRB).
分子通信(MC)是一种利用分子作为信息载体的范例,因此,生物纳米物联网(IoBNT)需要非常规的收发器和检测技术。在本研究中,我们提供了一种新颖的 MC 模型,该模型包含具有部分吸收功能的球形发射器和接收器。与文献中的接收器架构(如无源或完全吸收配置)相比,该模型提供了更真实的表示。利用粒子群优化(PSO)的优化技术,可以准确估计接收到的分子累积数量。该技术可获得几乎不变的校正参数,与文献相比,在均方根误差 (RMSE) 方面显著提高了 5 倍。估算出的信道模型提供了近似的分析脉冲响应,因此可用于估算距离、扩散系数或两者的组合等信道参数。参数估计采用迭代最大似然估计 (MLE),与估计的克拉默-拉奥下限 (CLRB) 相比,误差一致。
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引用次数: 0
Advances in Predicting Drug Functions: A Decade-Long Survey in Drug Discovery Research 预测药物功能的进展:药物发现研究十年调查
IF 2.2 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC Pub Date : 2023-12-21 DOI: 10.1109/TMBMC.2023.3345145
Pranab Das;Dilwar Hussain Mazumder
Drug function study is vital in current drug discovery, design, and development. Determining the drug functions of a novel drug is time-consuming, complicated, expensive, and requires many experts and clinical testing phases. The computational-based drug function prediction activity has recently become more attractive due to its capability to reduce drug development design complexity, time, human resources, cost, chemical waste, and the risk of failure. The evolution of the computational model has advanced as an effective tool for predicting and analyzing drug functions, which are derived from Medical Subject Headings (MeSH). However, predicting drug functions still faces several difficulties. Therefore, an exhaustive literature survey was conducted that discusses the application of computational methods to predict drug functions in the past decade. Additionally, this paper discusses the utilization of drug functions as an input feature to predict adverse drug reactions and disease classification. This work also provides an overview of the computational models with their performance, multi-label problem transformation methods, drug properties, and their sources needed for the task of drug function prediction. Finally, unsolved issues, research gaps, and difficulties with the drug function prediction task have been summarized.
药物功能研究在当前的药物发现、设计和开发中至关重要。确定一种新药的药物功能耗时长、过程复杂、成本高,而且需要经过许多专家和临床试验阶段。基于计算的药物功能预测活动最近变得越来越有吸引力,因为它能够降低药物开发设计的复杂性、时间、人力资源、成本、化学废物和失败风险。计算模型的发展已成为预测和分析药物功能的有效工具,药物功能来源于医学主题词表(MeSH)。然而,预测药物功能仍面临一些困难。因此,本文进行了详尽的文献调查,讨论了过去十年中应用计算方法预测药物功能的情况。此外,本文还讨论了如何利用药物功能作为输入特征来预测药物不良反应和疾病分类。这项工作还概述了药物功能预测任务所需的计算模型及其性能、多标签问题转换方法、药物特性及其来源。最后,还总结了药物功能预测任务中尚未解决的问题、研究空白和难点。
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引用次数: 0
IEEE Transactions on Molecular, Biological, and Multi-Scale Communications Publication Information 电气和电子工程师学会《分子、生物和多尺度通信论文集》(IEEE Transactions on Molecular, Biological, and Multi-Scale Communications)出版信息
IF 2.2 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC Pub Date : 2023-12-18 DOI: 10.1109/TMBMC.2023.3326009
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引用次数: 0
IEEE Communications Society Information IEEE 通信学会信息
IF 2.2 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC Pub Date : 2023-12-18 DOI: 10.1109/TMBMC.2023.3326011
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引用次数: 0
What Really is “Molecule” in Molecular Communications? The Quest for Physics of Particle-Based Information Carriers 分子通讯中的 "分子 "究竟是什么?探索基于粒子的信息载体的物理学原理
IF 2.2 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC Pub Date : 2023-12-04 DOI: 10.1109/TMBMC.2023.3338950
Hanlin Xiao;Kamela Dokaj;Ozgur B. Akan
Molecular communication, as implied by its name, uses molecules as information carriers for communication between objects. It has an advantage over traditional electromagnetic-wave-based communication in that molecule-based systems could be biocompatible, operable in challenging environments, and energetically undemanding. Consequently, they are envisioned to have a broad range of applications, such as in the Internet of Bio-Nano Things, targeted drug delivery, and agricultural monitoring. Despite the rapid development of the field, with an increasing number of theoretical models and experimental testbeds established by researchers, a fundamental aspect of the field has often been sidelined, namely, the nature of the molecule in molecular communication. The potential information molecules could exhibit a wide range of properties, making them require drastically different treatments when being modeled and experimented upon. Therefore, in this paper, we delve into the intricacies of commonly used information molecules, examining their fundamental physical characteristics, associated communication systems, and potential applications in a more realistic manner, focusing on the influence of their own properties. Through this comprehensive survey, we aim to offer a novel yet essential perspective on molecular communication, thereby bridging the current gap between theoretical research and real-world applications.
分子通信,顾名思义,就是利用分子作为信息载体,在物体之间进行通信。与传统的电磁波通信相比,分子通信的优势在于分子系统具有生物兼容性,可在具有挑战性的环境中运行,而且对能量的要求不高。因此,分子系统被认为具有广泛的应用前景,如生物纳米物联网、靶向给药和农业监测等。尽管该领域发展迅速,研究人员建立了越来越多的理论模型和实验平台,但该领域的一个基本方面往往被忽视,即分子通信中分子的性质。潜在的信息分子可能表现出多种多样的特性,因此在建立模型和进行实验时需要采用截然不同的处理方法。因此,在本文中,我们将深入探讨常用信息分子的复杂性,以更现实的方式研究它们的基本物理特性、相关通信系统和潜在应用,重点关注它们自身特性的影响。通过这一全面调查,我们旨在为分子通讯提供一个新颖而又重要的视角,从而弥合当前理论研究与实际应用之间的差距。
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引用次数: 0
Diffusion-Based Anti-Interference Joint Modulation in MIMO Molecular Communication 多输入多输出分子通信中基于扩散的抗干扰联合调制
IF 2.2 Q2 ENGINEERING, ELECTRICAL & ELECTRONIC Pub Date : 2023-11-29 DOI: 10.1109/TMBMC.2023.3336259
Guodong Yue;Guoying Lin;Qiang Liu;Kun Yang
Molecular communication (MC) is a significant technology in the field of nano-biology, which uses molecules as message carriers to transmit information. Diffusion channel model is the most common channel model base on Brownian motion in molecular communication since molecules can diffuse to the destination without the need of extra energy supply. However, the random Brownian motion brings high delay and uncertainty to the communication process and thus modulation methods are required to improve the communication performance. The molecular communication system in the SISO (Single Input Single Output) scenario will be seriously affected by ISI (Inter Symbol Interference). In MIMO (Multi-Input Multi-Output) scenario, since there are multiple transmitters and receivers, in addition to ISI, there will be ILI (Inter Link Interference) as well. At present, most modulations are based on the concentration, type, time and space of molecules and only focus on SISO scenario. In this study, inspired by the MoSK (Molecule Shift Keying) modulation method, we proposed a new joint modulation method for MIMO communication in order to minimize the effect of ISI and ILI. Numerical results show that compared with the current modulation scheme, the proposed scheme allows the MIMO system achieve better BER (Bit error rate) performance and transmission rate.
分子通讯(MC)是纳米生物学领域的一项重要技术,它利用分子作为信息载体来传输信息。扩散信道模型是分子通讯中最常见的基于布朗运动的信道模型,因为分子可以扩散到目的地而不需要额外的能量供应。然而,随机布朗运动会给通信过程带来高延迟和不确定性,因此需要采用调制方法来提高通信性能。在 SISO(单输入单输出)情况下,分子通信系统会受到 ISI(符号间干扰)的严重影响。在 MIMO(多输入多输出)情况下,由于有多个发射器和接收器,除了 ISI 外,还会出现 ILI(链路间干扰)。目前,大多数调制都是基于分子的浓度、类型、时间和空间,并且只关注 SISO 场景。本研究受 MoSK(分子移频键控)调制方法的启发,提出了一种用于 MIMO 通信的新型联合调制方法,以最大限度地降低 ISI 和 ILI 的影响。数值结果表明,与当前的调制方案相比,所提出的方案能使多输入多输出系统获得更好的误码率(BER)性能和传输速率。
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引用次数: 0
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IEEE Transactions on Molecular, Biological, and Multi-Scale Communications
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