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Genetically-encoded degraders as versatile modulators of intracellular therapeutic targets 基因编码降解物作为细胞内治疗靶点的通用调节剂
IF 3.9 3区 工程技术 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2023-09-01 DOI: 10.1016/j.cobme.2023.100458
Chuan Dai , Jinpeng Wang , Licheng Tu , Zhuoheng Pan , Jinru Yang , Shuang Zhou , Qinhong Luo , Lizhi Zhu , Yuxin Ye

Targeted protein degradation (TPD) is an emerging therapeutic approach that has attracted significant interest. The traditional TPD degraders rely on small molecules that can only target proteins of interest (POI) with known small-molecule binders or appropriate binding pockets. Recently, several genetic-encoded TPD (GE-TPD) strategies have been developed in which the degrader molecules are expressed in cells based on genetic information. GE-TPD discovers POI binders through techniques such as yeast and phage display and expands the E3 ligase toolbox through genetic encoding. In this review, we assess the progress of GE-TPD technologies in recent years and highlight innovative technologies that have the potential to advance the development of GE-TPD.

靶向蛋白降解(TPD)是一种新兴的治疗方法,引起了人们的极大兴趣。传统的TPD降解剂依赖于小分子,这些小分子只能用已知的小分子结合剂或合适的结合袋靶向感兴趣蛋白(POI)。近年来,一些基于遗传信息的降解分子在细胞中表达的遗传编码TPD (GE-TPD)策略被开发出来。GE-TPD通过酵母和噬菌体展示等技术发现POI结合物,并通过遗传编码扩展E3连接酶工具箱。本文综述了近年来GE-TPD技术的进展,重点介绍了有潜力推动GE-TPD发展的创新技术。
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引用次数: 0
Mining microbial organisms to discover and characterize novel CRISPR-Cas systems 挖掘微生物以发现和表征新型CRISPR-Cas系统
IF 3.9 3区 工程技术 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2023-09-01 DOI: 10.1016/j.cobme.2023.100469
Ourania Raftopoulou , Rodolphe Barrangou

The need for new genome manipulation tools is leading the way for the continued discovery of novel clustered regularly interspaced short palindromic repeats— CRISPR associated sequences (CRISPR-Cas) systems. Researchers have been analyzing the genomes of prokaryotes and more recently metagenomic sequencing data to find novel and diverse CRISPR-Cas systems and their associated genome editing effectors. In this review, we provide an overview of in silico, in vitro, and in vivo analyses performed to characterize key elements of CRISPR-Cas systems, encompassing the CRISPR array, Cas proteins, guide ribonucleic acid (RNAs), and protospacer-adjacent motif (PAM) which defines targeting. We also highlight subsequent in vitro and in vivo assays employed to validate CRISPR function and Cas effector activity in the context of genome editing in various cellular contexts.

对新的基因组操作工具的需求正在引领着新的集群规则间隔短回文重复序列——CRISPR相关序列(CRISPR-Cas)系统的持续发现。研究人员一直在分析原核生物的基因组和最近的宏基因组测序数据,以寻找新的和多样化的CRISPR-Cas系统及其相关的基因组编辑效应子。在这篇综述中,我们概述了为表征CRISPR-Cas系统的关键元件而进行的计算机、体外和体内分析,包括CRISPR阵列、Cas蛋白、引导核糖核酸(RNA)和定义靶向的原间隔区相邻基序(PAM)。我们还强调了随后在各种细胞背景下基因组编辑背景下用于验证CRISPR功能和Cas效应器活性的体外和体内测定。
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引用次数: 1
Corrigendum to “Emerging trends of discrete Poly(ethylene glycol) in biomedical applications” [Curr Opin Biomed Eng 24 (2022) 100419] “离散聚乙二醇在生物医学应用中的新兴趋势”更正[Curr Opin Biomed Eng 24(2022)100419]
IF 3.9 3区 工程技术 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2023-09-01 DOI: 10.1016/j.cobme.2023.100467
Jinming Hu, Shiyong Liu
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引用次数: 0
Contemporary standpoint and future of 3D bioprinting in tissue/organs printing 3D生物打印在组织/器官打印中的当代观点和未来
IF 3.9 3区 工程技术 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2023-09-01 DOI: 10.1016/j.cobme.2023.100461
Vundrala Sumedha Reddy, Brindha Ramasubramanian, Vedant Mohan Telrandhe, Seeram Ramakrishna

Additive manufacturing, often known as three-dimensional (3D) printing, is driving significant progress in a diverse range of fields, such as engineering, manufacturing, food, and medicine. Realistic tissue models and organ transplantation can provide necessary innovative opportunities to tackle countless medical and health care obstacles. These can be achieved by incorporation of 3D printing into tissue engineering, using live cells encapsulated in natural or synthetic biomaterials. This evolution of 3D bioprinting has been the focus of our article. Here, we methodically discussed the current stance, history, techniques, materials, and taxonomy of 3D bioprinting along with the challenges encountered.

增材制造,通常被称为三维(3D)打印,正在推动工程、制造、食品和医药等各个领域的重大进步。现实的组织模型和器官移植可以提供必要的创新机会,以解决无数的医疗和卫生保健障碍。这些可以通过将3D打印结合到组织工程中来实现,使用包裹在天然或合成生物材料中的活细胞。3D生物打印的这种演变一直是我们文章的重点。在这里,我们系统地讨论了当前的立场,历史,技术,材料和生物3D打印的分类以及遇到的挑战。
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引用次数: 4
The myokinetic interface: Implanting permanent magnets to restore the sensory-motor control loop in amputees 肌动界面:植入永磁体以恢复截肢者的感觉运动控制回路
IF 3.9 3区 工程技术 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2023-09-01 DOI: 10.1016/j.cobme.2023.100460
Marta Gherardini , Federico Masiero , Valerio Ianniciello , Christian Cipriani

The development of a dexterous hand prosthesis that is controlled and perceived naturally by the amputee is a major challenge in biomedical engineering. Recent years have seen the rapid evolution of surgical techniques and technologies aimed at this purpose, the majority of which probe muscle electrical activity for control, and deliver electrical pulses to nerves for sensory feedback. Here, we report on the myokinetic interface concept that exploits magnetic field principles to achieve natural control and sensory feedback of an artificial hand. Like implantable myoelectric sensors, but using passive implants, localizing magnets implanted in independent muscles could allow monitoring their contractions and thus controlling the corresponding movements in the artificial hand in a biomimetic, direct, independent, and parallel manner. Selectively vibrating the magnets also offers a unique opportunity to study kinesthetic percepts in humans. The myokinetic interface opens new possibilities for interfacing humans with robotic technologies in an intuitive way.

开发一种能被截肢者自然控制和感知的灵巧手假肢是生物医学工程的一个主要挑战。近年来,针对这一目的的外科技术和技术迅速发展,其中大多数是探测肌肉电活动以进行控制,并向神经传递电脉冲以进行感觉反馈。在这里,我们报告了肌动力学界面的概念,利用磁场原理来实现人工手部的自然控制和感官反馈。像植入式肌电传感器一样,但使用被动植入物,植入独立肌肉的局部磁铁可以监测它们的收缩,从而以仿生的、直接的、独立的、平行的方式控制假手的相应运动。选择性地振动磁铁也为研究人类的动觉知觉提供了一个独特的机会。肌动力学界面以直观的方式为人类与机器人技术的交互开辟了新的可能性。
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引用次数: 0
Sustainable medical materials printed by melt electrowriting: A mini-review 熔融电解打印的可持续医疗材料:一个小回顾
IF 3.9 3区 工程技术 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2023-09-01 DOI: 10.1016/j.cobme.2023.100464
Huaizhong Xu , Lei Du

The development of melt electrowriting (MEW) technology can print many sustainable medical materials into high-resolution scaffolds to be applied in tissue engineering and regenerative medicine. The printability of the MEW can be highly improved after tuning and avoiding the particular phenomena of jet lag, fiber shifting, jet pulsing, and fiber bridging. Different MEW devices are developed to produce scaffolds with complicated or hierarchical structures to mimic human tissues. It is believed that the MEW technology can be extended to many other medical applications in the following years.

熔融电解技术的发展可以将许多可持续医用材料打印成高分辨率支架,应用于组织工程和再生医学。调整后的新材料可大大提高印刷性能,避免了时差、光纤移位、射流脉冲和光纤桥接等特殊现象。不同的MEW设备被开发用于制造具有复杂或分层结构的支架来模拟人体组织。相信在接下来的几年中,MEW技术可以扩展到许多其他医疗应用。
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引用次数: 0
Multiplexed CRISPR-based methods for pathogen nucleic acid detection 基于多重crispr的病原体核酸检测方法
IF 3.9 3区 工程技术 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2023-09-01 DOI: 10.1016/j.cobme.2023.100471
Caitlin H. Lamb, Brian Kang, Cameron Myhrvold

Bacterial and viral pathogens are devastating to human health and well-being. In many regions, dozens of pathogen species and variants co-circulate. Thus, it is important to detect many different species and variants of pathogens in a given sample through multiplexed detection methods. CRISPR-based nucleic acid detection has shown to be a promising step towards an easy-to-use, sensitive, specific, and high-throughput method to detect nucleic acids from DNA and RNA viruses and bacteria. Here, we review the current state of multiplexed nucleic acid detection methods with a focus on CRISPR-based methods. We also look toward the future of multiplexed point-of-care diagnostics.

细菌和病毒病原体对人类健康和福祉具有破坏性。在许多地区,数十种病原体和变异共同传播。因此,通过多路检测方法在给定样品中检测许多不同种类和病原体变体是很重要的。基于crispr的核酸检测已被证明是一种易于使用、敏感、特异性和高通量的方法,可以从DNA和RNA病毒和细菌中检测核酸。在这里,我们回顾了多路核酸检测方法的现状,重点介绍了基于crispr的方法。我们还展望了多路即时诊断的未来。
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引用次数: 1
Engineered intravenous therapies for trauma 为创伤设计静脉注射疗法
IF 3.9 3区 工程技术 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2023-09-01 DOI: 10.1016/j.cobme.2023.100456
Trey J. Pichon , Nathan J. White , Suzie H. Pun

Trauma leading to severe hemorrhage and shock on average kills patients within 3–6 h after injury. With average prehospital transport times reaching 1–6 h in low- to middle-income countries, stopping the bleeding and reversing hemorrhagic shock is vital. First-generation intravenous hemostats rely on traditional drug delivery platforms, such as self-assembling systems, fabricated nanoparticles, and soluble polymers due to their active targeting, biodistribution, and safety. We discuss some challenges in translating these therapies to patients, as very few have successfully made it through preclinical evaluation in large animals, and none have translated to the clinic. Finally, we discuss the physiology of hemorrhagic shock, highlight a new low-volume resuscitant (LVR) PEG-20k, and end with considerations for the rational design of LVRs.

创伤导致严重出血和休克,患者平均在受伤后3-6小时内死亡。中低收入国家的平均院前转运时间达到1-6小时,止血和逆转失血性休克至关重要。第一代静脉止血器依赖于传统的药物递送平台,如自组装系统、制造的纳米颗粒和可溶性聚合物,因为它们具有主动靶向性、生物分布性和安全性。我们讨论了将这些疗法转化为患者的一些挑战,因为很少有人成功通过大型动物的临床前评估,也没有人转化为临床。最后,我们讨论了失血性休克的生理学,重点介绍了一种新的低容量复苏剂(LVR)PEG-20k,并对LVR的合理设计进行了讨论。
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引用次数: 1
Biosignal-based co-adaptive user-machine interfaces for motor control 基于生物信号的电机控制协同自适应用户-机器界面
IF 3.9 3区 工程技术 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2023-09-01 DOI: 10.1016/j.cobme.2023.100462
Maneeshika M. Madduri , Samuel A. Burden , Amy L. Orsborn

User-machine interfaces map biological signals measured from the user to control commands for external devices. The mapping from biosignals to device inputs is performed by a decoding algorithm. Adaptation of both the user and decoder—co-adaptation—provides opportunities to improve the inclusivity and usability of interfaces for diverse users and applications. User learning leads to robust interface control that can generalize across environments and contexts. Decoder adaptation can personalize interfaces, account for day-to-day signal variability, and improve overall performance. Co-adaptation therefore creates opportunities to shape the user and decoder system to achieve robust and generalizable personalized interfaces. However, co-adaptation creates a two-learner system with dynamic interactions between the user and decoder. Engineering co-adaptive interfaces requires new tools and frameworks to analyze and design user-decoder interactions. In this article, we review adaptive decoding, user learning, and co-adaptation in user-machine interfaces, primarily brain-computer, myoelectric, and kinematic interfaces, for motor control. We then discuss performance criteria for co-adaptive interfaces and propose a game-theoretic approach to designing user-decoder co-adaptation.

用户-机器接口将从用户测量到的生物信号映射到外部设备的控制命令。从生物信号到设备输入的映射由解码算法执行。用户和解码器的适配(共同适配)为改进不同用户和应用程序界面的包容性和可用性提供了机会。用户学习导致健壮的界面控制,可以跨环境和上下文进行推广。解码器自适应可以个性化接口,考虑到日常信号的可变性,并提高整体性能。因此,共同适应创造了塑造用户和解码器系统的机会,以实现健壮和可通用的个性化界面。然而,共同适应创造了一个用户和解码器之间动态交互的双学习者系统。工程共适应接口需要新的工具和框架来分析和设计用户-解码器交互。在本文中,我们回顾了自适应解码,用户学习和共同适应在用户-机器接口,主要是脑-机,肌电和运动学接口,用于运动控制。然后,我们讨论了协同自适应接口的性能标准,并提出了一种设计用户-解码器协同自适应的博弈论方法。
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引用次数: 1
Intracellular antibodies and biodegraders: Beyond small molecules and back again 细胞内抗体和生物降解剂:超越小分子,再回来
IF 3.9 3区 工程技术 Q2 ENGINEERING, BIOMEDICAL Pub Date : 2023-09-01 DOI: 10.1016/j.cobme.2023.100455
D. Cardella, D. Sanchez-Guzman, T.H. Rabbitts

Intracellular antibodies have been deployed as powerful research tools for the last 20 years for inhibition of proteins to convey specific information about protein function. Accordingly, intracellular antibodies have been used for target validation in oncology and were the first reagents to inhibit “undruggable” targets, such as RAS mutants and LMO2. Their versatility allows addition of effector functions to invoke cell phenotypes following target engagement inside cells. Moreover, the paratope–epitope interaction of intracellular antibodies has been recently exploited to develop small molecule surrogates. We will discuss the flexibility that intracellular antibodies provide for discovery research and for new generations of therapeutics in all clinical indications where an aberrant protein expression is involved (oncology, neurological disease, infection, inflammation).

在过去的20年里,细胞内抗体作为一种强大的研究工具被用于抑制蛋白质以传递蛋白质功能的特定信息。因此,细胞内抗体已被用于肿瘤学的靶标验证,并且是第一批抑制“不可药物”靶标的试剂,如RAS突变体和LMO2。它们的多功能性允许添加效应功能,以调用细胞内目标接合后的细胞表型。此外,细胞内抗体的旁位-表位相互作用最近被用于开发小分子替代品。我们将讨论细胞内抗体在涉及异常蛋白表达的所有临床适应症(肿瘤、神经系统疾病、感染、炎症)中为发现研究和新一代治疗提供的灵活性。
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引用次数: 0
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Current Opinion in Biomedical Engineering
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