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Universal strategy for rapid design and analysis of gas detection peptide chips with positional preference 快速设计和分析具有位置偏好的气体检测肽芯片的通用策略
IF 5.4 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-09-19 DOI: 10.1016/j.sbsr.2024.100697
Honghao Zhang , Xi Zhang , Yingjun Si , Hui Li , Jiyang Han , Chuan Yang , Hui Yang

The design and analysis of gas detection chips directly affect their detection efficiency and applicability. Detection devices are currently restricted by detection principles, facing drawbacks like intricate structural design, limited applicability, and low detection efficiency. We have designed a complete set of design and analysis scheme for a peptide gas detection chip. First, we selected specific and high-affinity peptide combinations from existing peptide-gas affinity datasets. Then, the peptide chip's arrangement was grouped according to the variations in peptides' affinity towards different gases. Peptides were arranged based on their affinity levels within each group, striking a balance between discrimination and flexibility in the design of the chip. Finally, we evaluated the analysis methods by generating simulated data based on a reference affinity matrix constructed from actual data. Due to the preprocessing role of chip design on affinity data, all methods can effectively accomplish gas classification. In gas concentration prediction tasks, our method reduced mean square error to 0.41, significantly outperforming other methods. This gas detection scheme shortens the development cycle of chip design and analysis methods, fully utilizing the specificity of peptides, enhancing gas analysis effectiveness, and demonstrating the agile development of gas detection chips.

气体检测芯片的设计和分析直接影响其检测效率和适用性。目前,检测设备受检测原理限制,存在结构设计复杂、适用性有限、检测效率低等缺点。我们设计了一套完整的多肽气体检测芯片设计和分析方案。首先,我们从现有的多肽-气体亲和性数据集中选择了特异性和高亲和性的多肽组合。然后,根据多肽对不同气体亲和力的变化对多肽芯片的排列进行分组。每组中的多肽根据其亲和力水平进行排列,从而在芯片设计的区分度和灵活性之间取得平衡。最后,我们根据实际数据构建的参考亲和力矩阵生成模拟数据,对分析方法进行了评估。由于芯片设计对亲和性数据的预处理作用,所有方法都能有效完成气体分类。在气体浓度预测任务中,我们的方法将均方误差降至 0.41,明显优于其他方法。该气体检测方案缩短了芯片设计和分析方法的开发周期,充分利用了多肽的特异性,提高了气体分析的有效性,体现了气体检测芯片的敏捷开发。
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引用次数: 0
Sediment microbial fuel cells capable of powering outdoor environmental monitoring sensors 能够为室外环境监测传感器供电的沉积物微生物燃料电池
IF 5.4 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-09-17 DOI: 10.1016/j.sbsr.2024.100695
Yolina Hubenova , Ivo Bardarov , Eleonora Hubenova , Evelina Slavcheva

In this study, Sediment Microbial Fuel Cells (SMFCs) prototypes have been developed to operate under open-air conditions and power sensors for environmental monitoring. Two SMFCs with a volume of 50 l each, consisting of two types of anodic materials – graphite and coke, were operated on-field for over a year. The electrical outputs have been recorded and compared with the measured environmental parameters such as temperature, light illumination, atmospheric pressure, humidity, etc. The statistical analysis of the obtained data shows that temperature changes between 0 and 14 °C do not affect the power achieved. On the contrary, the sunlight irradiation showed a second-order polynomial correlation with the current generated by the SMFCs, increasing the latter during the days. The cathode reactions significantly impacted the power density achieved by both explored SMFCs and the system's sustainability. The metallurgical coke is suggested to be used as an inexpensive and convenient anode material for SMFCs giving compatible results to the widely used graphite.

本研究开发了沉积物微生物燃料电池(SMFC)原型,可在露天条件下运行,并为环境监测传感器供电。两个体积各为 50 升的 SMFC 由石墨和焦炭两种阳极材料组成,在现场运行了一年多。电输出已被记录下来,并与温度、光照、大气压力、湿度等测量环境参数进行了比较。对所获数据的统计分析显示,0 至 14 °C 之间的温度变化不会影响所实现的功率。相反,太阳光辐照与 SMFC 产生的电流呈二阶多项式关系,后者在日间不断增加。阴极反应对所探索的 SMFC 达到的功率密度和系统的可持续性都有很大影响。建议将冶金焦炭用作 SMFC 的廉价且方便的阳极材料,其结果与广泛使用的石墨相一致。
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引用次数: 0
Recent advances in biosensors for analysis of DNA/RNA methylation 用于分析 DNA/RNA 甲基化的生物传感器的最新进展
IF 5.4 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-09-17 DOI: 10.1016/j.sbsr.2024.100690
Zhensheng Ma , Yue Hu , Lina Wang , Mimi Li , Chenghong Li , Lulu Li , Hui Huang , Lichao Fang , Xiaolong Wang , Huamin Liu , Junsong Zheng
DNA and RNA methylation are essential epigenetic modifications that play a pivotal role in various physiological processes by modulating gene expression at the post-transcriptional level. Abnormal DNA/RNA methylation is closely linked to a range of human diseases, including cancer and neurological disorders. Therefore, the accurate and sensitive detection of DNA/RNA methylation is of great importance in both epigenetic biology research and disease diagnosis. Technological advancements have led to the comprehensive development of methylation detection methods. Among these, electrochemical techniques have garnered significant attention owing to their simplicity and effectiveness in detection. This review provides an overview of methylation detection technologies based on electrochemical principles developed over the past five years, including electrochemical, photoelectrochemical, electrochemiluminescence, and fluorescence methodologies. Additionally, it discusses the advantages and disadvantages of these approaches, challenges and advancements in methylation detection.
DNA 和 RNA 甲基化是重要的表观遗传修饰,通过在转录后水平调节基因表达,在各种生理过程中发挥着关键作用。DNA/RNA 甲基化异常与一系列人类疾病(包括癌症和神经系统疾病)密切相关。因此,准确灵敏地检测 DNA/RNA 甲基化对表观遗传生物学研究和疾病诊断都非常重要。技术的进步促进了甲基化检测方法的全面发展。其中,电化学技术因其检测简便、有效而备受关注。本综述概述了过去五年中基于电化学原理开发的甲基化检测技术,包括电化学、光电化学、电化学发光和荧光方法。此外,它还讨论了这些方法的优缺点、甲基化检测面临的挑战和取得的进展。
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引用次数: 0
Optical biosensor based on the dual-functional gold nanoparticles for rapid and accurate multiplex detection of influenza A and B viruses 基于双功能金纳米粒子的光学生物传感器,用于快速准确地多重检测甲型和乙型流感病毒
IF 5.4 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-09-17 DOI: 10.1016/j.sbsr.2024.100689
Yuhan Zhang , Shixi Zhang , Huiyi Wang , Mathias Charconnet , Jiaye Jiang , Yuan Peng , Lei Zhang , Charles H. Lawrie

Due to the global pandemic of influenza and related respiratory diseases, rapid and accurate detection is in high demand to control virus spread and facilitate early treatment. However, most current molecular detection methods either require long turnaround times, suffer from low sensitivity and/or can only detect single pathogens. To overcome these challenges, we constructed a novel colorimetric gold nanoparticle (AuNPs) biosensor containing functionalized probes to detect multiple targets simultaneously. Utilizing the salt aging method, AuNPs were functionalized by the designed oligonucleotides to fabricate biosensors. This biosensor can show visible color change within 20 min, and could minimally detect the target influenza viruses at 10 nM. This detection technique presents high sensitivity in a short time, meanwhile identifying two different influenza viruses simultaneously. It opens a window to a multiplex-in-one strategy for a clinical viral diagnostic.

由于流感和相关呼吸道疾病在全球范围内流行,因此需要快速准确的检测方法来控制病毒传播并促进早期治疗。然而,目前大多数分子检测方法要么需要较长的周转时间,要么灵敏度低和/或只能检测单一病原体。为了克服这些挑战,我们构建了一种新型比色金纳米粒子(AuNPs)生物传感器,其中含有可同时检测多个目标的功能化探针。利用盐老化法,我们用设计的寡核苷酸对 AuNPs 进行了功能化处理,制成了生物传感器。这种生物传感器能在 20 分钟内显示出可见的颜色变化,并能在 10 nM 的最小范围内检测到目标流感病毒。这种检测技术可在短时间内实现高灵敏度,同时识别两种不同的流感病毒。它为临床病毒诊断的多路合一策略打开了一扇窗。
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引用次数: 0
Green and real-time detection of GHB in soft drinks and alcoholic beverages using an eco-friendly cellulose paper-based fluorescent probe 使用环保型纤维素纸基荧光探针对软饮料和酒精饮料中的伽马--羟丁酸进行绿色实时检测
IF 5.4 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-09-17 DOI: 10.1016/j.sbsr.2024.100691
Jordi Hernández-Contreras , Jordi Roig-Rubio , Margarita Parra , Salvador Gil , Pau Arroyo , José A. Sáez , Carlos Lodeiro , Pablo Gaviña

Chemical submission, a nefarious tactic increasingly employed in criminal activities, has spurred urgent calls for innovative countermeasures. GHB, often dubbed “liquid ecstasy,” stands out as a favoured agent for its surreptitious nature and seamless solubility in water and alcoholic beverages. Addressing this menace head-on, a groundbreaking study delves into the development of advanced chemosensors, leveraging 2-aminonaphtoxazole- and benzoxazole-based compounds adorned with fluorescein, to construct a cellulose paper-based detection system. This ingenious setup not only detects GHB in water but extends its vigilance to real alcoholic and non-alcoholic beverages, illuminating a pathway to thwart potential assailants. With a fluorescence enhancement mechanism at play, the system boasts a dynamic range from 0 to 125 mM GHB in water, exhibiting a commendable limit of detection (LOD) at 7.3 mM. Crucially, its eco-friendly nature, devoid of solvent residuals, underscores its suitability as a proactive shield against chemical submission, embodying a beacon of hope in the fight against such insidious threats to public safety.

化学投诚是犯罪活动中越来越多地使用的一种邪恶手段,它促使人们迫切要求采取新颖的对策。GHB 经常被称为 "液体摇头丸",因其隐蔽性和在水和酒精饮料中的无缝溶解性而成为最受欢迎的制剂。针对这一威胁,一项突破性研究深入研究了先进化学传感器的开发,利用掺有荧光素的 2-aminonaphtoxazole 和 benzoxazole 类化合物,构建了一种基于纤维素纸的检测系统。这种巧妙的装置不仅能检测水中的伽马--羟丁酸,还能对真正的酒精和非酒精饮料保持警惕,为挫败潜在的攻击者提供了一条途径。在荧光增强机制的作用下,该系统的动态检测范围从 0 到 125 mM,检测限(LOD)为 7.3 mM。最重要的是,该系统不含溶剂残留物,具有生态友好的特性,可主动防护化学物质的危害,是消除此类危害公众安全的隐患的希望之光。
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引用次数: 0
Magnetic nanoparticles and quantum dots coupled immuno nano fluorescence assay for visual detection of HPV16-induced cervical cancer cells from cytology/biopsy samples 磁性纳米粒子和量子点耦合免疫纳米荧光检测法,用于从细胞学/活检样本中直观检测 HPV16 诱导的宫颈癌细胞
IF 5.4 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-09-17 DOI: 10.1016/j.sbsr.2024.100693
Srishty Raman , Pranay Tanwar , Jyoti Meena , Neerja Bhatla , Subhash C. Yadav

Biopsy-based histopathology and immunohistochemistry for cervical cancer detection are costly, time-consuming, and require expert personnel for data interpretation. We developed a simple magnetic nanoparticle (MNPs) and quantum dots (QD) coupled immuno nano fluorescence assay (MNPQDCINFA) for visual detection of HPV16-induced cervical cancer cells under UV light from cytology/biopsy samples exploiting host cancer cells expressing viral E7 protein as a biomarker. The E7 domain-specific polyclonal antibodies were generated against the 1–44 amino acid N-terminal (anti-domainN antibody) and 48–98 amino acid C-terminal domain (anti-domainC antibody). These antibodies were bioconjugated with nonfluorescent MNPs (60 % efficiency) and fluorescent QDs (66 % efficiency) to generate capturing (MNPs-anti-domainN antibody) and detecting (QDs-anti-domainC antibody) nano-complex, respectively. Assay conditions, such as concentration of capturing (20 μM) and detecting (50 nM) antibody nano-complexes and incubation duration (30 min), were standardized. The analytical sensitivity using pure HPV16 E7 protein was recorded up to 200 ng with very high specificity to differentiate from other HPV strains E7 proteins. The diagnostic performance characteristics with cytology samples showed 100 % sensitivity and specificity compared to immunofluorescence and biopsy-based histopathology analysis. The present invention can be effectively used for a quick, disposable, rapid cervical cancer cell detection system as an alternate test for immunofluorescence and histopathology.

用于宫颈癌检测的活检组织病理学和免疫组织化学方法成本高、耗时长,而且需要专业人员进行数据解读。我们开发了一种简单的磁性纳米粒子(MNPs)和量子点(QD)耦合免疫纳米荧光检测法(MNPQDCINFA),利用表达病毒 E7 蛋白的宿主癌细胞作为生物标记物,在紫外光下从细胞学/活检样本中直观检测 HPV16 诱导的宫颈癌细胞。E7 结构域特异性多克隆抗体是针对 1-44 个氨基酸 N 端(抗结构域 N 抗体)和 48-98 个氨基酸 C 端(抗结构域 C 抗体)产生的。这些抗体分别与非荧光 MNPs(效率为 60%)和荧光 QDs(效率为 66%)进行生物共轭,生成捕获(MNPs-抗 domainN 抗体)和检测(QDs-抗 domainC 抗体)纳米复合物。捕获(20 μM)和检测(50 nM)抗体纳米复合物的浓度和孵育时间(30 分钟)等检测条件均已标准化。纯 HPV16 E7 蛋白的分析灵敏度高达 200 毫微克,特异性极高,可与其他 HPV 株 E7 蛋白区分开来。与免疫荧光和基于活检的组织病理学分析相比,细胞学样本的诊断性能特征显示出 100 % 的灵敏度和特异性。本发明可有效地用于快速、一次性、快速宫颈癌细胞检测系统,作为免疫荧光和组织病理学的替代检测方法。
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引用次数: 0
CO2 sensing via periodic Array of graphene disks 通过石墨烯圆盘的周期性阵列实现二氧化碳传感
IF 5.4 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-09-17 DOI: 10.1016/j.sbsr.2024.100696
Mansour Rezapour Gatabi , Seyed Saleh Ghoreishi Amiri , Reza Yousefi , Hadi Dehbovid , Amard Afzalian
This work aims to introduce a gas detection structure based on stacked layers of graphene-spacer-metal. The presented structure consists of three stacked layers. The first layer is the periodic arrays of graphene disks on top of a typical dielectric such as TOPAS or KAPTON with a known refractive index. Then the second layer provides an air gap opening room for a sample environment. Finally, the third layer includes the dielectric and a continuous graphene sheet. All the exploited elements are modeled by circuit element while the equivalent impedance of the whole structure is calculated. The impedance matching concept is also exploited to obtain absorption power based on the calculated impedance. Additionally, full-wave simulation is performed to investigate the circuit modeling accuracy. Achieving a perfect match for absorption versus frequency verifies the developed method's robustness. Furthermore, comprehensive and ample simulation results are reported to highlight the sensitivity and reliability of the proposed gas detector.
这项工作旨在介绍一种基于石墨烯-垫片-金属堆叠层的气体检测结构。所介绍的结构由三层堆叠层组成。第一层是在具有已知折射率的典型电介质(如 TOPAS 或 KAPTON)上的石墨烯圆盘周期性阵列。然后,第二层为样品环境提供气隙空间。最后,第三层包括电介质和连续的石墨烯薄片。所有利用的元素都以电路元素建模,同时计算整个结构的等效阻抗。还利用阻抗匹配概念,根据计算出的阻抗获得吸收功率。此外,还进行了全波仿真,以研究电路建模的准确性。吸收功率与频率的完美匹配验证了所开发方法的稳健性。此外,还报告了全面而充分的仿真结果,以突出所提议气体探测器的灵敏度和可靠性。
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引用次数: 0
A rapid and non-immersed method of viscosity measurement with small-volume samples based on longitudinal guided waves in capillary 基于毛细管纵向导波的小体积样品粘度快速非浸没测量法
IF 5.4 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-09-17 DOI: 10.1016/j.sbsr.2024.100692
Shaohong Qu , Songli Hu , Ting Li , Chaomin Wu , Yuexiu Chen , Linqian Zhao , Lihang Zhu , Jianjun Wu , Zhifeng Tang , Peifang Dong , Fengjiang Zhang
Viscosity measurement is crucial in medical diagnostics, pharmaceuticals, and analytical chemistry, where samples are frequently in small volumes and measurements are supposed to be conducted in a short time with convenient approaches. In this study, we propose a viscosity measurement approach based on longitudinal guided waves with a dominant in-plane displacement. The viscosity is determined using the attenuation of longitudinal guided waves in a liquid-filled capillary. The use of guided waves accelerates the measurement while the application of a capillary reduces the sample volume. Additionally, the approach is nondestructive and repeatable since the liquid sample is injected into the capillary instead of immersing the probe into the liquid; the sample is located in a relatively closed tube, reducing the interferences of outside factors. In our propomsed method, the sample volume is only 176.6 μL and the measurement time of one sample is only 5.6 ms. The effectiveness and practicability of the proposed approach is confirmed by measuring silicon oils with viscosities from 9.01 mPa·s to 532 mPa·s and a limit of detection (LOD) of 0.97 mPa·s. The minimum error is about 5 % at 442 mPa·s and the maximum error is about 18 % at 9.01 mPa·s Besides, the approach was employed for detection of viscosity in artificial tear samples, which indicated that satisfactory applicability was achieved. This work not only demonstrates the judicious design of a rapid and non-immersed method for viscosity measurement, but also a promising scheme for point-of-care analysis of tear viscosity, thus offering great potential for at-home diagnosis and personalized healthcare of various ocular diseases.
粘度测量在医疗诊断、制药和分析化学领域至关重要,因为这些领域的样品通常体积较小,需要在短时间内以便捷的方法进行测量。在这项研究中,我们提出了一种基于纵向导波的粘度测量方法,该方法具有主要的面内位移。利用纵向导波在充满液体的毛细管中的衰减来测定粘度。导波的使用加快了测量速度,而毛细管的应用则减少了样品体积。此外,这种方法还具有无损性和可重复性,因为液体样品是注入毛细管中,而不是将探针浸入液体中;样品位于一个相对封闭的管中,减少了外界因素的干扰。在我们提出的方法中,样品体积仅为 176.6 μL,一个样品的测量时间仅为 5.6 ms。通过测量粘度从 9.01 mPa-s 到 532 mPa-s 的硅油,以及 0.97 mPa-s 的检测限 (LOD),证实了建议方法的有效性和实用性。此外,该方法还被用于检测人工泪液样本的粘度,结果表明其适用性令人满意。这项工作不仅证明了一种快速、非浸没式粘度测量方法的合理设计,还证明了一种用于泪液粘度护理点分析的可行方案,从而为各种眼部疾病的居家诊断和个性化医疗保健提供了巨大潜力。
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引用次数: 0
Biosensing in the optical switch configuration on strong plasmonic gratings enabling differential referenced detection 在强等离子光栅的光学开关配置中进行生物传感,实现差分参考检测
IF 5.4 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-08-01 DOI: 10.1016/j.sbsr.2024.100681
Emilie Laffont , Arnaud Valour , Nicolas Crespo-Monteiro , Pierre Berini , Yves Jourlin

A deep gold-coated sinusoidal grating is proposed as a transducer for label-free real-time biosensing, operating in a new configuration based on the optical switch effect, which produces complementary optical outputs enabling differential and referenced detection. Biosensing experiments are reported for the first time on this platform, using immunoassays involving biospecific pairs consisting of bovine serum albumin and its antibody, and human serum albumin and its antibody. Direct and sandwich immunoassays are demonstrated along with negative controls. A limit of detection of 6 pg/mm2 was obtained. A theoretical model correlating the variation in the differential referenced output optical signal with adlayer growth is presented and supports the experimental results. The proposed detection device operating in the optical switch configuration makes a promising case for point-of-care detection applications because the differential detection of two diffracted orders enables common noise suppression and robust interrogation.

我们提出了一种深金涂层正弦光栅,作为无标记实时生物传感的换能器,它以基于光学开关效应的新配置运行,产生互补光学输出,从而实现差分和参考检测。首次报道了在该平台上进行的生物传感实验,使用的免疫测定涉及由牛血清白蛋白及其抗体和人血清白蛋白及其抗体组成的生物特异性配对。直接免疫测定和夹心免疫测定以及阴性对照都得到了验证。检测限为 6 pg/mm2。实验提出了一个理论模型,该模型将差分参考输出光信号的变化与吸附层的生长联系起来,并支持实验结果。由于两个衍射阶次的差分检测可实现常见的噪声抑制和稳健的询问,因此,以光学开关配置运行的拟议检测设备在护理点检测应用中大有可为。
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引用次数: 0
Design of hexagonal shaped spectroscopy based biosensor for the detection of tuberculosis 设计基于六角形光谱的结核病检测生物传感器
IF 5.4 Q1 CHEMISTRY, ANALYTICAL Pub Date : 2024-08-01 DOI: 10.1016/j.sbsr.2024.100682
Rakib Hossen , Md. Selim Hossain , Sadia Afrin Mim , Md. Al-Amin , Sabbir Ahmed , Md. Ashrafuzzaman , Md. Ashiq Salahin , Shuvo Sen

A proposal has been made to identify tuberculosis cells using a novel compact sensor based on photonic crystal fiber: PCF in accordance with hexagonal spectroscopy. This proposed structure, which consists of a closely packed hexagonal air hole in the cladding region and a hollow-core area, possesses a very low loss of 6.30 × 10−8 dB/m and an exceptionally high sensitivity of up to 91.75 % (tuberculosis cell for 1.345). Numerous optical parameters have been identified and assessed, comprised of the numerical aperture, the V-parameter, or normalized frequency (Veff), and the effective area (Aeff). The operational wavelength range is defined as 0.80–3.0 THz. The numerical investigation of the properties of the proposed TB sensors is performed within the environment of COMSOL Multiphysics (Version 5.3) using FV-FEM stands for the full vector finite element method. PCF sensors composed of hexagonal lattice in a circular form with ZEONEX as the backdrop material is intended to boost the sensitivity response in comparison to the earlier works. Additionally, the sensor that is being displayed achieves a single modality throughout its whole operational wavelength range. This proposed sensor may play a significant role in identifying tuberculosis thanks to its superior sensitivity response and extremely minimal confinement loss. So, it is clearly seen that this sensor could be used to bio-medical sectors with process of terahertz (THz) wave pulse.

有人建议使用基于光子晶体光纤的新型紧凑传感器来识别结核病细胞:PCF 与六边形光谱学相结合。这种拟议的结构由包层区域的密布六边形气孔和中空纤芯区域组成,具有 6.30 × 10-8 dB/m 的极低损耗和高达 91.75 % 的超高灵敏度(结核病细胞为 1.345)。已经确定并评估了许多光学参数,包括数值孔径、V 参数或归一化频率 (Veff) 和有效面积 (Aeff)。工作波长范围定义为 0.80-3.0 太赫兹。在 COMSOL Multiphysics(5.3 版)环境下,使用 FV-FEM 表示全矢量有限元法,对所提出的 TB 传感器的特性进行了数值研究。PCF 传感器由圆形六边形晶格组成,以 ZEONEX 为背景材料,旨在提高灵敏度响应。此外,所展示的传感器在其整个工作波长范围内实现了单一模式。由于其卓越的灵敏度响应和极小的封闭损耗,这种拟议的传感器可在识别结核病方面发挥重要作用。因此,我们可以清楚地看到,这种传感器可通过太赫兹(THz)脉冲波用于生物医学领域。
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引用次数: 0
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Sensing and Bio-Sensing Research
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