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High-Performance Dielectric Modulated Epitaxial Tunnel Layer Tunnel FET for Label-Free Detection of Biomolecules 用于无标签检测生物分子的高性能介电调制外延层隧道场效应晶体管
IF 1.8 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2024-11-08 DOI: 10.1109/OJNANO.2024.3494714
Kunal Aggarwal;Avinash Lahgere
In this paper, using calibrated simulation we have reported a dielectric modulated epitaxial tunnel layer TFET (DM ETL-TFET) for the label-free detection of biomolecules. We have shown that due to vertical tunneling direction, the ETL-TFET exhibits $sim$3 orders of improvement in the ON-state current in comparison to its counterpart conventional TFET. In addition, the proposed DM ETL-TFET biosensor shows $sim$4 orders, and $sim$1 order higher ON-state current sensitivity than the past reported core-shell junctionless NT-TFET, and DM NT-TFET biosensors, respectively. Moreover, in comparison to the lateral DM TFET, the proposed DM ETL-TFET shows $sim$310 mV higher threshold voltage sensitivity. Also, the subthreshold swing sensitivity of the proposed biosensor is found to be $sim$0.63 for the keratin biomolecule. Although the proposed biosensor shows almost the same selectivity, the proposed DM ETL-TFET biosensor does not need a complex fabrication process flow, hence, reducing the fabrication cost. Our findings that the proposed biosensor is a lucrative alternative to the FET-based biosensors.
在本文中,我们利用校准模拟报告了一种用于生物分子无标记检测的介电调制外延隧道层 TFET(DM ETL-TFET)。我们已经证明,由于采用垂直隧道方向,ETL-TFET 的导通电流比其对应的传统 TFET 提高了 3 个数量级。此外,与过去报道的无核壳结型 NT-TFET 和 DM NT-TFET 生物传感器相比,所提出的 DM ETL-TFET 生物传感器的导通态电流灵敏度分别高出 4 个数量级和 1 个数量级。此外,与横向 DM TFET 相比,所提出的 DM ETL-TFET 的阈值电压灵敏度高出 310 mV。此外,对于角蛋白生物分子,拟议生物传感器的阈下摆动灵敏度为 0.63 美元。尽管拟议的生物传感器显示出几乎相同的选择性,但拟议的 DM ETL-TFET 生物传感器不需要复杂的制造工艺流程,因此降低了制造成本。我们的研究结果表明,拟议的生物传感器是基于场效应晶体管的生物传感器的有利替代品。
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引用次数: 0
Multitask Learning for Estimation of Magnetic Parameters Using Pattern Recognition 基于模式识别的多任务学习磁参数估计
IF 1.8 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2024-11-08 DOI: 10.1109/OJNANO.2024.3494836
Anubha Sehgal;Shipra Saini;Hemkant Nehete;Kunal Kranti Das;Sourajeet Roy;Brajesh Kumar Kaushik
Machine learning (ML) approaches present an effective technique for accurately and efficiently predicting device parameters. Using these techniques, we introduce a multi-task convolutional neural network (CNN) model and support vector regression (SVR) model that is intended to precisely estimate two important parameters of magnetic systems such as the Dzyaloshinskii-Moriya interaction (DMI) constant and the exchange constant (Aex). The magnetic Hamiltonian encapsulates various energy components, including exchange energy, DMI, Zeeman energy, and anisotropy energy, wherein factors such as saturation magnetization, DMI strength, exchange stiffness, and anisotropy constants influence their magnitudes. Conventionally, the estimation of these parameters has been computationally intensive and time-consuming. The CNN and SVR models can simultaneously estimate both the DMI constant and the exchange constant, making it a versatile tool for magnetic system characterization. The custom CNN model performs best for the DMI constant and Aex with R2 scores of 0.991 and 0.998 respectively. The SVR model achieves R2 scores of 0.927 and 0.989 for DMI constant and Aex respectively. The estimated values are in good agreement with true values, thus emphasizing the potential of ML methods for pattern recognition.
机器学习(ML)方法为准确、高效地预测设备参数提供了一种有效的技术。利用这些技术,我们引入了一个多任务卷积神经网络(CNN)模型和支持向量回归(SVR)模型,旨在精确估计磁系统的两个重要参数,如Dzyaloshinskii-Moriya相互作用(DMI)常数和交换常数(Aex)。磁哈密顿量包含各种能量分量,包括交换能、DMI、塞曼能和各向异性能,其中饱和磁化强度、DMI强度、交换刚度和各向异性常数等因素影响它们的大小。传统上,这些参数的估计计算量大,耗时长。CNN和SVR模型可以同时估计DMI常数和交换常数,使其成为磁性系统表征的通用工具。自定义CNN模型对DMI常数和Aex的R2分别为0.991和0.998,表现最好。SVR模型对DMI常数和Aex的R2得分分别为0.927和0.989。估计值与真实值很好地一致,从而强调了机器学习方法在模式识别方面的潜力。
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引用次数: 0
Portable and Cost-Effective Handheld Ultrasound System Utilizing FPGA-Based Synthetic Aperture Imaging 利用基于 FPGA 的合成孔径成像技术的便携式低成本手持超声系统
IF 1.8 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2024-11-07 DOI: 10.1109/OJNANO.2024.3494544
Wenping Wang;Ziliang Feng
The handheld ultrasound has been widely applied in various clinical applications due to its high portability and cost-effectiveness advantages. The smaller hardware architecture can expand its range of application scenarios. However, miniaturized ultrasound devices face the challenges in terms of image quality, frame rate, and power consumption. The achievement of high-quality and high-frame-rate imaging depends on numerous channels and higher pulse repetition frequency (PRF) at the cost of power consumption. The proposed work aims to design a field-programmable gate array (FPGA)-based prototype with synthetic aperture method for portable and cost-effective handheld ultrasound system. The prototype supports 8 transmit and receive channels and forms up to 8 synthetic apertures. In addition, to optimize the FPGA resources, the auto delay calculation and segmented apodizations are employed for 4 parallel beamforming lines. To evaluate the performance of our proposed prototype, scan sequences of B-mode, C-mode, and D-mode are implemented for image construction. The results show that the proposed prototype can provide a lateral resolution of 0.30 mm, a contrast-to-noise ratio (CNR) of 7.58 dB, and a frame rate of 22 frames per second (FPS) in dual-mode imaging. Moreover, it is remarkable that the memory and logic resources in the FPGA (EP4CE55) account for 73.7% and 66.2%, respectively, which makes the FPGA's power consumption only about 530 mW. The proposed prototype is suitable for handheld and other miniaturized ultrasound imaging systems.
手持式超声波因其便携性强、成本效益高的优势,已被广泛应用于各种临床应用中。较小的硬件结构可以扩大其应用范围。然而,小型化超声设备在图像质量、帧速率和功耗方面面临着挑战。要实现高质量和高帧频成像,必须以功耗为代价,获得更多的通道和更高的脉冲重复频率(PRF)。本研究旨在设计一种基于现场可编程门阵列(FPGA)的原型,采用合成孔径方法,用于便携式、高性价比的手持超声系统。该原型支持 8 个发射和接收通道,最多可形成 8 个合成孔径。此外,为了优化 FPGA 资源,4 条并行波束形成线采用了自动延迟计算和分段光阑。为了评估我们提出的原型的性能,我们采用了 B-模式、C-模式和 D-模式的扫描序列来构建图像。结果表明,在双模成像中,所提出的原型可提供 0.30 毫米的横向分辨率、7.58 分贝的对比度-噪声比(CNR)和每秒 22 帧的帧频(FPS)。此外,FPGA(EP4CE55)的内存和逻辑资源分别占 73.7% 和 66.2%,这使得 FPGA 的功耗仅约为 530 mW。所提出的原型适用于手持式和其他微型超声成像系统。
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引用次数: 0
Microfluidic Microreactor Device With Integrated Heaters for Temperature Assisted Synthesis of Gold Nanoparticles and Alkene 用于金纳米粒子和烯的温度辅助合成的带集成加热器的微流体微反应器装置
IF 1.8 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2024-11-05 DOI: 10.1109/OJNANO.2024.3492116
Tinku Naik Banavathi;Mukesh Kumar Sivakumar;Aniket Balapure;Sohan Dudala;Satish Kumar Dubey;Sanket Goel
Thermal synthesis is an essential process in most chemical formulations. While several well-established methods exist for synthesizing materials in large quantities, synthesizing materials on a small scale is challenging and costly. This work delves into the design and functionality of microfluidic-based thermal synthesis microreactors, which are highly customizable and cost-effective. Instead of conventional electrothermal heaters, Laser-Induced Graphene (LIG) heaters are leveraged over traditional electrothermal heaters due to their cost-effectiveness, simplified fabrication process, and high level of customization. The parameters for developing these LIG heaters were optimized by tuning the speed and power of the CO2 laser to obtain both the desired electrical conductivity and mechanical strength. The developed heaters were integrated with microfluidic devices fabricated using the soft-lithography technique. The functionality of these devices was demonstrated by performing gold nanoparticles (inorganic) and alkene (organic) synthesis. The synthesized gold nanoparticles (AuNPs) and alkene solution were analyzed using UV-visible spectroscopy, Fourier Transform Infrared (FTIR) spectroscopy, and Nuclear Magnetic Resonance (NMR) techniques to evaluate the quality of the end products. The functionality of synthesized solutions can be utilized as catalyst in electrochemical applications and as precursors in downstream chemical syntheses.
热合成是大多数化学配方中必不可少的过程。虽然有几种成熟的方法可用于大量合成材料,但小规模合成材料却具有挑战性且成本高昂。这项研究深入探讨了基于微流体的热合成微反应器的设计和功能,这种微反应器具有高度可定制性和成本效益。与传统的电热加热器相比,激光诱导石墨烯(LIG)加热器具有成本效益高、制造工艺简化和高度定制化等优点。通过调整 CO2 激光的速度和功率,对开发 LIG 加热器的参数进行了优化,以获得所需的导电性和机械强度。所开发的加热器与使用软光刻技术制造的微流体设备集成在一起。通过金纳米粒子(无机)和烯(有机)的合成,证明了这些装置的功能。使用紫外-可见光谱、傅立叶变换红外光谱和核磁共振技术分析了合成的金纳米粒子(AuNPs)和烯溶液,以评估最终产品的质量。合成溶液的功能可用作电化学应用中的催化剂和下游化学合成中的前体。
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引用次数: 0
An Electronic Slime-Based Epidermal Electrode Using Carbon Nanocomposites for Biosignal Sensing 基于碳纳米复合材料的生物信号传感电子黏液表皮电极
IF 1.8 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2024-10-30 DOI: 10.1109/OJNANO.2024.3488720
Yu Feng;Hui Sun;Meng Chen;Cong Wu;Jiankun Li;Zhi Li;Kremena Makasheva;Na Liu;Guanglie Zhang;Wen Jung Li
Epidermal sensing electrodes, a key type of advanced wearable device, play a crucial role in biosignal sensing. Recent advancements in functional nanomaterials have propelled the development of these electrodes; however, their fabrication often involves complex processes and expensive raw materials. While significant progress has been made in enhancing the biocompatibility of electrodes through the use of human-friendly materials, improvements in flexibility and conductivity are still needed to ensure optimal skin conformability and compliance. In this study, we present an innovative epidermal sensing electrode constructed from electronic slime (E-slime), which is synthesized through a simple one-step, one-pot method utilizing widely available and cost-effective carbon nanocomposites. The E-slime electrode exhibits exceptional deformability, flexibility, and self-healing properties, ensuring mechanical compliance and effective skin adherence for epidermal applications. Our results demonstrate the electrode's capability in biosignal sensing, including electrocardiogram (ECG) monitoring with a high signal-to-noise ratio (SNR) of 46dB and electromyogram (EMG) monitoring for real-time human-robot interaction. This work introduces a novel strategy for the design and fabrication of epidermal electrodes, offering high conformability, low impedance, and superior signal quality, which holds significant promise for applications in intelligent healthcare monitoring and human-machine interfaces.
表皮传感电极是一种关键的先进可穿戴设备,在生物信号传感中起着至关重要的作用。功能纳米材料的最新进展推动了这些电极的发展;然而,它们的制造往往涉及复杂的工艺和昂贵的原材料。虽然通过使用对人体友好的材料在提高电极的生物相容性方面取得了重大进展,但仍然需要提高灵活性和导电性,以确保最佳的皮肤相容性和依从性。在这项研究中,我们提出了一种创新的表皮传感电极,该电极由电子粘液(E-slime)构建,通过简单的一步,一锅法合成,利用广泛使用且成本低廉的碳纳米复合材料。e -黏液电极具有特殊的可变形性、柔韧性和自愈特性,确保机械顺应性和有效的表皮应用皮肤粘附性。我们的研究结果证明了电极在生物信号传感方面的能力,包括具有46dB高信噪比(SNR)的心电图(ECG)监测和实时人机交互的肌电图(EMG)监测。这项工作介绍了一种表皮电极设计和制造的新策略,具有高一致性、低阻抗和优越的信号质量,在智能医疗监测和人机界面的应用中具有重要的前景。
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引用次数: 0
Polarization and Strain in Piezoelectric Nanomaterials: Advancing Sensing Applications in Biomedical Technology 压电纳米材料中的极化和应变:推进生物医学技术中的传感应用
IF 1.8 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2024-10-30 DOI: 10.1109/OJNANO.2024.3488787
Anmol Garg;Sajal Agarwal;Deepak Punetha
This paper reports the comparative analysis of different piezoelectric materials through a MEMS-based piezoelectric actuator model, emphasizing their potential for sensing applications. The polarization and electrostrictive strain tensor capabilities have been extensively studied for different piezoelectric materials such as PZT, LiNbO3, PVDF, etc. The simulation results obtained at varying voltages and mechanical stress demonstrate that LiNbO3 exhibits superior performance among the tested materials, with a polarization value of 0.5163 C/m2 at 800 volts and an electrostrictive strain tensor of 0.01 at an applied mechanical stress of 25 MPa. These findings will assist scientists in selecting the most suitable piezoelectric materials for sensing applications in biomedical fields.
本文报告了通过基于 MEMS 的压电致动器模型对不同压电材料进行的比较分析,强调了它们在传感应用方面的潜力。本文广泛研究了不同压电材料(如 PZT、LiNbO3、PVDF 等)的极化和电致应变张量能力。在不同电压和机械应力下获得的模拟结果表明,LiNbO3 在测试材料中表现出更优越的性能,在 800 伏特电压下的极化值为 0.5163 C/m2,在施加 25 兆帕机械应力时的电致伸缩应变张量为 0.01。这些发现将有助于科学家为生物医学领域的传感应用选择最合适的压电材料。
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引用次数: 0
Manipulation of 2D and 3D Magnetic Solitons Under the Influence of DMI Gradients 在 DMI 梯度影响下操纵二维和三维磁孤子
IF 1.8 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2024-10-21 DOI: 10.1109/OJNANO.2024.3484568
Rayan Moukhader;Davi Rodrigues;Eleonora Raimondo;Vito Puliafito;Bruno Azzerboni;Mario Carpentieri;Abbass Hamadeh;Giovanni Finocchio;Riccardo Tomasello
Magnetic solitons hold great promise for token-based computing applications due to their intrinsic properties, including small size, topological stability, ultra-low power manipulation, and potentially ultra-fast operation. In particular, they have been proposed as reliable memory units that enable the execution of various logic tasks with in-situ memory. A critical challenge remains the identification of optimal soliton and efficient manipulation techniques. Previous research has primarily focused on the manipulation of two-dimensional solitons, such as skyrmions, domain walls, and vortices, by applied currents. The discovery of novel methods to control magnetic parameters, such as the interfacial Dzyaloshinskii-Moriya interaction, through strain, temperature gradients, and applied voltages offers new avenues for energetically efficient manipulation of magnetic structures. In this work, we present a comprehensive study using numerical and analytical methods to investigate the stability and motion of various magnetic textures under the influence of DMI gradients. Our results show that Néel and Bloch-type skyrmions, as well as radial vortices, exhibit motion characterized by finite skyrmion Hall angles, while circular vortices undergo expulsion dynamics. This study provides a deeper and crucial understanding of the stability and gradient-driven dynamics of magnetic solitons, paving the way for the design of scalable spintronics token-based computing devices.
磁孤子因其固有特性,包括体积小、拓扑稳定、超低功耗操作和潜在的超高速运行,在基于令牌的计算应用中大有可为。特别是,它们已被提议作为可靠的存储单元,能够利用原位存储器执行各种逻辑任务。一个关键的挑战仍然是确定最佳孤子和高效操纵技术。以往的研究主要集中在通过外加电流操纵二维孤子,如天幕、畴壁和涡旋。通过应变、温度梯度和外加电压来控制磁参数(如界面 Dzyaloshinskii-Moriya 相互作用)的新方法的发现,为高能高效地操纵磁结构提供了新途径。在这项研究中,我们采用数值和分析方法对各种磁纹理在 DMI 梯度影响下的稳定性和运动进行了全面研究。我们的研究结果表明,奈尔型和布洛赫型天元以及径向涡旋表现出以有限天元霍尔角为特征的运动,而圆形涡旋则经历驱逐动力学。这项研究加深了对磁孤子稳定性和梯度驱动动力学的重要理解,为设计可扩展的自旋电子令牌式计算设备铺平了道路。
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引用次数: 0
Gallium Sulfide-Immobilized Optical Fiber-Based SPR Sensor for Detection of Brilliant Blue Food Adulteration 用于检测亮蓝食品掺假的硫化镓固定化光纤 SPR 传感器
IF 1.8 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2024-10-21 DOI: 10.1109/OJNANO.2024.3484408
Nasih Hma Salah;Baljinder Kaur;Hogr M. Rasul;Yesudasu Vasimalla;Chella Santhosh;Ramachandran Balaji;S. R. Srither;Santosh Kumar
Food safety assurance is crucial, particularly in identifying prohibited colors like brilliant blue (BB) that may pose significant health risks when used in food products. Surface plasmon resonance (SPR) biosensors provide a reliable, label-free method for highly sensitive detection of food adulterants. In this study, we present a novel gallium sulfide (GaS)-immobilized optical fiber SPR sensor designed for the rapid, real-time detection of BB synthetic dye. The proposed sensor is comprised of a high birefringence layer (HBL) core with non-added formaldehyde (NaF) cladding, silver (Ag) as the plasmonic metal, and GaS for enhanced detection sensitivity. To determine the sensor performance, the wavelength-dependent response was measured at different refractive indices (RIs), together with sensitivity and figure of merit (FOM) over the wavelength range of 400 nm to 1000 nm. The parameters were evaluated in a sensing medium consisting of water and BB under concentrations ranging from 10 mM to 600 mM. Moreover, the distribution of electromagnetic fields across the multilayer structures of the sensor, particularly at the interfaces between Ag-GaS and GaS-analytes, was investigated. At a 10 mM concentration, the optimized Ag-GaS-based sensor, consisting of 70 nm Ag and 3 nm GaS layers at an incidence angle of 85°, achieves a maximum sensitivity of 5119.6 nm/RIU and FOM of 255.98 RIU-1. The obtained results illustrate the sensor has the potential to detect non-approved colors like BB in food items with great sensitivity and accuracy.
食品安全保障至关重要,尤其是在识别像亮蓝(BB)这样的违禁色素方面。表面等离子体共振(SPR)生物传感器为高灵敏度检测食品掺假物质提供了一种可靠的无标记方法。在这项研究中,我们提出了一种新型硫化镓(GaS)固定光纤 SPR 传感器,用于快速、实时检测 BB 合成染料。该传感器由带有无添加甲醛(NaF)包层的高双折射层(HBL)核心、作为质子金属的银(Ag)以及用于提高检测灵敏度的 GaS 组成。为了确定传感器的性能,在 400 纳米到 1000 纳米的波长范围内,测量了不同折射率(RI)下随波长变化的响应,以及灵敏度和优点系数(FOM)。这些参数是在由水和 BB 组成的传感介质(浓度范围为 10 mM 至 600 mM)中进行评估的。此外,还研究了电磁场在传感器多层结构上的分布,特别是在 Ag-GaS 和 GaS-analytes 之间的界面上。在 10 mM 的浓度下,基于 Ag-GaS 的优化传感器由 70 nm 的 Ag 层和 3 nm 的 GaS 层组成,入射角为 85°,最大灵敏度为 5119.6 nm/RIU,FOM 为 255.98 RIU-1。这些结果表明,该传感器可以非常灵敏、准确地检测食品中的非认可色素(如 BB)。
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引用次数: 0
Bismuth-Immobilized Optical Fiber-Based SPR Nanosensor for Detection of Zinc Nitrate Contamination in Aquaculture Industry 基于铋固定化光纤的 SPR 纳米传感器用于检测水产养殖业中的硝酸锌污染
IF 1.8 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2024-10-14 DOI: 10.1109/OJNANO.2024.3479869
Yesudasu Vasimalla;Nasih Hma Salah;Baljinder Kaur;Hogr M. Rasul;Chella Santhosh;Ramachandran Balaji;S.R. Srither;Santosh Kumar
Zinc nitrate, a toxic substance usually found in industrial waste and agricultural residues, poses a serious threat to the aquaculture industry due to the poor water quality and harmful aquatic life. Effective monitoring of zinc nitrate contamination is essential to protect aquatic ecosystems and also ensures the safety of aquaculture products. This study presents a bismuth-immobilized optical fiber-based surface plasmon resonance (SPR) biosensor for the rapid detection of zinc nitrate contamination. The sensor design incorporates a ZBLAN core, NaF cladding, silver (Ag) as a plasmonic metal, and bismuth (Bi) to enhance detection sensitivity. In our work, we compared the sensor performance of the proposed bismuth-immobilized SPR biosensor with the conventional Ag-based sensor design. The performance of the proposed Ag-Bi sensor model is compared with the conventional Ag-based sensor. To improve the sensitivity and FOM, Ag layer thickness is varied between 50 and 80 nm with respect to the zinc nitrate concentrations of 0%, 1%, and 5%. Using the angular interrogation method, the resonance wavelength shifts are correlated to changes in refractive index (RI). The Bi-immobilized Ag layer achieved a maximum sensitivity of 5680 nm/RIU at 5% zinc nitrate concentration and an FOM of 95.2381 RIU−1 at 1%. While conventional Ag-based sensors attained a maximum sensitivity of 5240 nm/RIU and an FOM of 90.345 RIU−1 at 80 nm Ag thickness. The above results demonstrate that the Ag-Bi layer SPR biosensor is highly suitable for simultaneously detecting zinc nitrate and other heavy metal contaminants in water, providing a cost-effective solution for heavy metal contamination detection in aquatic industry.
硝酸锌是一种有毒物质,通常存在于工业废料和农业残留物中,由于水质差,对水生生物有害,因此对水产养殖业构成严重威胁。有效监测硝酸锌污染对保护水生生态系统和确保水产养殖产品的安全至关重要。本研究提出了一种基于铋固定光纤的表面等离子体共振(SPR)生物传感器,用于快速检测硝酸锌污染。传感器设计采用了 ZBLAN 内核、NaF 包层、银(Ag)作为质子金属,以及铋(Bi)来提高检测灵敏度。在我们的工作中,我们比较了拟议的铋固定 SPR 生物传感器与传统的银基传感器设计的传感器性能。将所提出的银铋传感器模型的性能与传统的银基传感器进行了比较。为了提高灵敏度和 FOM,在硝酸锌浓度为 0%、1% 和 5%时,银层厚度在 50 和 80 nm 之间变化。利用角度询问法,共振波长偏移与折射率(RI)的变化相关联。双固定银层在硝酸锌浓度为 5%时的最大灵敏度为 5680 nm/RIU,在浓度为 1%时的 FOM 为 95.2381 RIU-1。而传统的银基传感器在银层厚度为 80 nm 时的最大灵敏度为 5240 nm/RIU,FOM 为 90.345 RIU-1。上述结果表明,银-铋层 SPR 生物传感器非常适合同时检测水中的硝酸锌和其他重金属污染物,为水产行业的重金属污染检测提供了一种经济有效的解决方案。
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引用次数: 0
First-Principles Simulation of the Interaction Between DNA Nucleotides and One-Dimensional Carbon Chain in Electrical Based Sequencing 电测序中 DNA 核苷酸与一维碳链相互作用的第一原理模拟
IF 1.8 Q3 MATERIALS SCIENCE, MULTIDISCIPLINARY Pub Date : 2024-09-03 DOI: 10.1109/OJNANO.2024.3451954
Zeina Salman;Jin-Woo Kim;Steve Tung
Electrical DNA sequencing has attracted significant attention in recent years due to its simplified sequencing protocol, compact sequencing system, and relatively low sequencing cost. In the design and fabrication of the sequencing device, carbon-based nanomaterials such as graphene have been explored as a promising sensing material that provides an excellent combination of spatial resolution and base specificity. Using first-principles simulation, we determined the effect on the electrical conductivity of a one-dimensional carbon chain due to the presence of four DNA bases. The simulation results indicate that the interaction between the carbon chain and different DNA bases leads to different levels of conductivity change in the carbon chain. Quantitatively, base A is the most difficult base to detect due to its relatively small current change. Furthermore, the results also show that the relative orientation of the bases with respect to the carbon chain can affect the induced current change in the chain. This information can be used to optimize the structural design of future sequencing devices. Collectively, the first-principles simulation results suggest the integration of a one-dimensional carbon chain with supporting nanofluidic designs can provide a viable approach towards the development of a compact, robust, and high-resolution DNA sequencing system.
近年来,DNA 电测序因其简化的测序方案、紧凑的测序系统和相对较低的测序成本而备受关注。在测序装置的设计和制造过程中,石墨烯等碳基纳米材料作为一种很有前景的传感材料,提供了空间分辨率和碱基特异性的完美结合,受到了广泛的关注。通过第一原理模拟,我们确定了四种 DNA 碱基的存在对一维碳链导电性的影响。模拟结果表明,碳链与不同 DNA 碱基之间的相互作用导致碳链电导率发生不同程度的变化。从数量上看,碱基 A 是最难检测的碱基,因为其电流变化相对较小。此外,研究结果还表明,碱基相对于碳链的相对取向会影响碳链中的诱导电流变化。这些信息可用于优化未来测序装置的结构设计。总之,第一原理模拟结果表明,将一维碳链与支持性纳米流体设计相结合,是开发紧凑、坚固和高分辨率 DNA 测序系统的可行方法。
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引用次数: 0
期刊
IEEE Open Journal of Nanotechnology
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