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Genome-wide association study in the Holstein cattle population highlights candidate variants for milk production traits 对荷斯坦牛种群的全基因组关联研究突出了产奶性状的候选变异
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-10-29 DOI: 10.1016/j.animal.2025.101694
S. Koncagül , A.Ö. Şen , M. Yıldırır , H. Koyun , E. Ünay , İ. Karakoyunlu , A. Kasakolu
Understanding the genetic basis of production traits in dairy cattle is important for both improving productivity and its economic significance. Although genome-wide association studie has been widely used internationally to investigate the genetic factors of milk production traits, limited genomic data are available for the Holstein cattle population. In this study, the most comprehensive genomic analysis conducted in Türkiye to date, we aimed to identify single−nucleotide polymorphisms (SNPs) associated with milk yield (MY), fat yield (FY), protein yield (PY), and milking speed (MS) in the Holstein cattle population. Data were obtained from 79 dairy herds comprising 17 166 cows born between 2012 and 2019, as provided by the Cattle Breeders’ Association of Türkiye. Genotyping was performed using the Affymetrix Axiom Bovine 54K SNP Chip; after quality control procedures, 15 288 cows and 31 944 SNPs were included in the analysis. A total of 7 SNPs were identified as significantly associated with the studied traits. Two SNPs on BTA14 (rs109146371 and rs109350371) were significantly associated with 305MY. A significant SNP associated with PY (rs41718954) was identified on BTA14, and another SNP (rs10451141) on BTA18 showed a significant association with FY. Additionally, three SNPs significantly associated with MS were detected on BTA2, BTA11, and BTA12 (rs29009916, rs109459144, and rs42647772). Notably, the association of four SNPs (rs10451141 for FY, and rs29009916, rs109459144, and rs42647772 for MS) was identified for the first time in this study. These variants were located near genes with potential roles in mammary gland function and milk component synthesis. These variants are located near genes potentially involved in mammary gland function and milk component synthesis. Although identified in the Holstein cattle population, these findings have international relevance and applicability due to the importation of semen from various countries. Ultimately, this study contributes to the development of effective selection strategies for specific populations and provides valuable insights into the genetics of milk production traits on a global scale.
了解奶牛生产性状的遗传基础对提高奶牛生产率和经济效益都具有重要意义。尽管全基因组关联研究在国际上被广泛用于研究产奶性状的遗传因素,但荷斯坦牛种群的基因组数据有限。在这项研究中,迄今为止在 rkiye中进行的最全面的基因组分析,我们旨在鉴定与荷斯坦牛种群的产奶量(MY),脂肪产量(FY),蛋白质产量(PY)和挤奶速度(MS)相关的单核苷酸多态性(snp)。数据来自79个奶牛群,包括2012年至2019年出生的17 166头奶牛,数据由 rkiye牛饲养者协会提供。使用Affymetrix Axiom牛54K SNP芯片进行基因分型;经质量控制程序分析,共纳入15 288头奶牛,snp 31 944个。共有7个snp被鉴定为与研究性状显著相关。BTA14上的两个snp (rs109146371和rs109350371)与305MY显著相关。在BTA14上发现了与PY相关的显著SNP (rs41718954),在BTA18上发现了与FY相关的显著SNP (rs10451141)。此外,在BTA2、BTA11和BTA12上检测到3个与MS显著相关的snp (rs29009916、rs109459144和rs42647772)。值得注意的是,本研究首次发现了4个snp (FY的rs10451141, MS的rs29009916、rs109459144和rs42647772)的关联。这些变异位于与乳腺功能和乳成分合成有潜在作用的基因附近。这些变异位于可能涉及乳腺功能和乳成分合成的基因附近。虽然是在荷斯坦牛种群中发现的,但由于从不同国家进口精液,这些发现具有国际相关性和适用性。最终,该研究有助于开发针对特定种群的有效选择策略,并为全球范围内产奶性状的遗传学提供有价值的见解。
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引用次数: 0
Dynamic responses of energy metabolism in ewes during late pregnancy: a meta-regression 妊娠后期母羊能量代谢的动态反应:meta回归。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-10-25 DOI: 10.1016/j.animal.2025.101690
M. Plante-Dubé, M.P. Létourneau-Montminy, F. Castonguay, R. Gervais
Insufficient energy intake throughout late gestation in ewes can induce a negative energy balance, leading to hypoglycemia and hyperketonemia, and increasing the risk of metabolic diseases. Previous studies have investigated the changes in key metabolites related to energy metabolism during late gestation in sheep, focusing on glucose, non-esterified fatty acids (NEFAs), and beta-hydroxybutyrate (BHB). The current meta-analysis was undertaken to gather available data on the kinetic of energy metabolites throughout late gestation to investigate the metabolic status of ewes in relation to dietary energy level and litter size. For the construction of the database, dietary energy concentration of each experiment was classified into two categories: diets covering between 60 and 100% (E60) or covering more than 100% (E100) of the metabolizable energy requirement for twin-bearing ewes at 133 days of gestation according to the National Research Council (NRC, 2007). Treatment groups were also categorized according to average litter size: single ([1.0 – 1.5[), twins ([1.5 – 2.5[), triplets ([2.5 – 3.5[), and quadruplets+ ([3.5 – 5.0]). The analysis of the meta-design revealed a quadratic effect of day to lambing for circulating glucose. For both dietary energy levels, glucose concentration decreased from day –42 to reach a nadir between days –28 and –14, depending on litter size group, and then increased until day –1. A greater decrease in glucose concentration was observed with larger litter sizes and was more pronounced for E60 than E100 groups. For each litter size group, when comparing similar days in gestation, E100 groups showed greater glucose concentrations than E60. Circulating NEFA increased linearly throughout late gestation, and a significant interaction was observed between dietary energy level and litter size group. For a similar litter size, NEFA concentrations were higher for E60 compared with E100, and the increase in NEFA concentrations with litter size was more pronounced for E60 than E100 groups, during the last 42 days in gestation. Circulating BHB increased with gestation. The intercept was higher and the slope steeper for E60 compared with E100, as well as for groups of ewes bearing larger litters. The meta-regression developed demonstrate the impact of litter size on energy requirements of ewes in late gestation. The meta-design also highlighted that data on the energy demands of ewes bearing three or more lambs are scarce. Of all the dietary treatments gathered in this meta-analysis, according to NRC (2007), only three provided an adequate amount of energy for triplet-bearing and none for quadruplet+-bearing ewes.
母羊妊娠后期能量摄入不足可诱发负能量平衡,导致低血糖和高酮血症,增加代谢性疾病的风险。先前的研究已经研究了绵羊妊娠后期与能量代谢相关的关键代谢物的变化,重点是葡萄糖、非酯化脂肪酸(NEFAs)和β -羟基丁酸(BHB)。当前的荟萃分析旨在收集妊娠后期能量代谢物动力学的现有数据,以研究母羊的代谢状态与饲粮能量水平和产仔数的关系。在构建数据库的过程中,根据美国国家研究委员会(NRC, 2007)的要求,将每个试验的饲粮能量浓度分为两类,即在妊娠133天双胎母羊的代谢能需求中,饲粮能量浓度在60 ~ 100% (E60)之间或超过100% (E100)。各组按平均产仔数分为单胎([1.0 ~ 1.5])、双胞胎([1.5 ~ 2.5])、三胞胎([2.5 ~ 3.5])和四胞胎+([3.5 ~ 5.0])。meta设计分析显示,日龄对羔羊循环葡萄糖的影响呈二次效应。在两种饲粮能量水平下,葡萄糖浓度从第42天开始下降,在第28 ~ 14天达到最低点,随产仔数的增加而增加,直到第1天。产仔数越大,葡萄糖浓度下降越明显,E60组比E100组更明显。对于各胎次组,当比较相似妊娠天数时,E100组的葡萄糖浓度高于E60组。循环NEFA在妊娠后期呈线性增加,饲粮能量水平与产仔数之间存在显著的交互作用。在相同产仔数下,E60组NEFA浓度高于E100组,且在妊娠最后42 d内,E60组NEFA浓度随产仔数的增加比E100组更明显。循环BHB随妊娠增加。与E100相比,E60的截距更高,斜率更陡,产仔量更大的母羊组的截距也更高。元回归分析显示产仔数对母羊妊娠后期能量需求的影响。元设计还强调,关于生三只或更多羔羊的母羊的能量需求的数据很少。根据NRC(2007),在这项荟萃分析中收集的所有饮食处理中,只有三种为三胞胎母羊提供了足够的能量,而四胞胎+母羊则没有。
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引用次数: 0
Improved genetic evaluation in Karan Fries cattle using multitrait single-step genomic best linear unbiased prediction method 利用多性状单步基因组最佳线性无偏预测方法改进卡兰弗莱斯牛遗传评价。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-10-24 DOI: 10.1016/j.animal.2025.101692
I. Ilayaraja , A. Chitra, J. Vyas, I. Kumar, L. Muansangi, S.P. Singh, G.R. Gowane, A. Mukherjee , S. Mukherjee
The advancement in the methodology for genomic prediction, using Single-step Genomic Best Linear Unbiased Prediction (ssGBLUP), has significantly improved the precision and efficiency of selecting desirable traits in livestock in recent times. Karan Fries (KF) cattle, developed since 1980s, are selected on the basis of pedigree and phenotypes so far. It is fairly reasonable that further enhancement in the performance can be achieved by incorporating genomic information for the estimation of genetic parameters and breeding values for higher accuracy. Therefore, the main aim of the study was to evaluate the accuracy of estimation for milk production performance traits in KF cattle using both pedigree and a limited genomic data. The 8 454 phenotypic records of KF cows, spanning from 1982 to 2023, and 355 genotyped animals were analysed to estimate variance–covariance components and genetic parameters using Restricted Maximum Likelihood (REML) and ssGREML methods. Heritability estimates for key traits, total milk yield (TMY), 305-day milk yield (305-DMY), lactation peak yield (PY), dry period (DP), and age at first calving (AFC), were 0.24 ± 0.03, 0.25 ± 0.03, 0.27 ± 0.03, 0.11 ± 0.04, and 0.21 ± 0.03, respectively. Genetic correlations among milk production traits (TMY, 305-DMY, and PY) were high and positive (> 0.9), while both AFC and DP showed negative genetic correlations with milk production traits (ranging from −0.85 to −0.04). Phenotypic correlations between milk production traits were all positive, ranging from 0.24 to 0.82. In terms of breeding value prediction, multitrait ssGBLUP yielded more accurate Genomic Estimated Breeding Values for AFC, with a 13% increase in accuracy compared to single-trait ssGBLUP. The accuracy of breeding value prediction for TMY, 305-DMY, PY, DP, and AFC was improved by 11.53, 11.53, 9.25, 26.47 and 33.33%, respectively, when using the multitrait ssGBLUP model. The present study highlighted the effectiveness of genomic data in enhancing the accuracy of genetic parameters for production and reproduction traits in KF cattle, even without their own phenotypes that will permit early selection for more effective breeding programmes using multitrait ssGBLUP in the tropics, having a global relevance.
单步基因组最佳线性无偏预测(Single-step genomic Best Linear Unbiased prediction, ssGBLUP)在基因组预测方法上的进步,近年来显著提高了家畜理想性状选择的精度和效率。Karan Fries (KF)牛是自20世纪80年代以来开发的,迄今为止是根据谱系和表型进行选择的。通过结合基因组信息来估计遗传参数和育种值,进一步提高性能是相当合理的,以提高精度。因此,本研究的主要目的是评估利用家系和有限的基因组数据估计KF牛产奶性能性状的准确性。利用有限最大似然(REML)和ssGREML方法,对1982 ~ 2023年8 454头KF奶牛的表型记录和355头基因型动物进行分析,估计方差-协方差成分和遗传参数。总产奶量(TMY)、305天产奶量(305-DMY)、泌乳高峰产奶量(PY)、干期(DP)和初产龄(AFC)的遗传力分别为0.24±0.03、0.25±0.03、0.27±0.03、0.11±0.04和0.21±0.03。产奶量性状(TMY、305-DMY和PY)与产奶量性状呈高正相关(>.9),而AFC和DP与产奶量性状呈负相关(范围为-0.85 ~ -0.04)。产奶量性状的表型相关均为正相关,范围为0.24 ~ 0.82。在育种价值预测方面,与单性状ssGBLUP相比,多性状ssGBLUP为AFC提供了更准确的基因组估计育种值,准确度提高了13%。多性状ssGBLUP模型对TMY、305-DMY、PY、DP和AFC的育种值预测精度分别提高了11.53、11.53、9.25、26.47和33.33%。目前的研究强调了基因组数据在提高KF牛生产和繁殖性状遗传参数准确性方面的有效性,即使没有它们自己的表型,这将允许在热带地区使用多性状ssGBLUP进行更有效的育种计划的早期选择,具有全球相关性。
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引用次数: 0
Energy metabolism and ruminal fermentation of prolific ewes in response to scheduled increase, relative to lambing, of dietary energy source and concentration 产羔母羊的能量代谢和瘤胃发酵对饲粮能量来源和浓度相对于羔羊增加的响应。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-10-24 DOI: 10.1016/j.animal.2025.101691
M. Plante-Dubé , C. Sylvestre , R. Bourassa , P. Luimes , P.G. Toral , S. Buczinski , F. Castonguay , R. Gervais
In late gestation, to prevent metabolic disorders in prolific ewes, energy intake must align with increased energy requirements to support the growth of multiple fetuses. The present study was conducted to evaluate if providing a high-concentrate diet as early as 4 compared with 2 weeks prepartum was more effective to meet the energy requirements of prolific breeds, and if corn silage could serve as a high-energy feed for late gestational ewes. Eight weeks prepartum, 48 mature F1 crossbred (Dorset × Romanov) ewes were offered grass-legume silage ad libitum. Four weeks later, ewes were randomly assigned to 1 of 3 isoenergetic dietary treatments: a grass-legume silage and ground corn−based total mixed ration (TMR) from week –4 (GC4; gradual increase from week −5) or week –2 (GC2; gradual increase from week −3) or a corn silage−based TMR from week –4 (CS4; gradual increase from week −5). Dry matter intake (DMI), body condition score (BCS), circulating beta-hydroxybutyrate (BHB), glucose, and non-esterified fatty acids (NEFAs) were monitored throughout the last 6 weeks of gestation. Rumen fluid was collected at week –2 to assess fermentation parameters. Inclusion of concentrates at 4 (GC4) compared with 2 weeks prepartum (GC2) resulted in greater DMI and metabolizable energy intake (MEI) from weeks –5 to –3. Overall, during the last 5 weeks of gestation, DMI and MEI of GC4 ewes were 12 and 20% higher compared with GC2, respectively. At week –4, circulating BHB concentrations were greater for GC4 compared with GC2, despite an improved energy balance, as confirmed by lower NEFA and greater glucose concentrations. Except for a decreased DMI and MEI at week –4, resulting in greater NEFA concentrations for CS4 compared with GC4, no other impact of energy source on intake or circulating NEFA and glucose was observed during the prepartum period. Compared with GC4, BHB concentrations were greater for CS4 from weeks –5 to –1. Rumen proportion of acetate decreased by 7%, whereas butyrate increased by 22% for CS4. The current experiment demonstrates that blood BHB concentration was affected by dam energy balance and ingredient composition of the diet. Our study also shows that a high-energy corn silage diet provided from 4 weeks prepartum can prevent the onset of a negative energy balance during late gestation, similar to adding ground corn to a grass-legume silage-based diet.
在妊娠后期,为了防止多产母羊的代谢紊乱,能量摄入必须与增加的能量需求相一致,以支持多胎的生长。本研究旨在评价在妊娠前期4周饲喂高精料饲粮是否比妊娠前期2周饲喂高精料饲粮更能有效地满足高产品种的能量需求,以及玉米青贮是否可作为妊娠后期母羊的高能饲料。准备8周时,48只成熟的F1杂交母羊(多塞特×罗曼诺夫)随意饲喂草豆科青贮饲料。4周后,母羊被随机分配到3种等能饲粮处理中的1种:从第4周开始(GC4;从第5周开始逐渐增加)或第2周(GC2;从第3周开始逐渐增加)或从第4周开始(CS4;从第5周开始逐渐增加)以玉米青贮为基础的TMR。在妊娠最后6周监测干物质采食量(DMI)、体况评分(BCS)、循环β -羟基丁酸(BHB)、葡萄糖和非酯化脂肪酸(NEFAs)。在第2周采集瘤胃液,评估发酵参数。与2周准备(GC2)相比,在第4周(GC4)纳入浓缩物导致-5周至-3周的DMI和代谢能摄入量(MEI)增加。总体而言,妊娠最后5周,GC4母羊的DMI和MEI分别比GC2高12%和20%。在第4周,GC4的循环BHB浓度高于GC2,尽管能量平衡得到改善,这一点由较低的NEFA和较高的葡萄糖浓度证实。除了在第-4周DMI和MEI下降,导致CS4的NEFA浓度高于GC4,在准备期间没有观察到其他能量来源对摄入或循环NEFA和葡萄糖的影响。与GC4相比,CS4在-5 ~ -1周的BHB浓度更高。CS4组瘤胃中乙酸比例降低7%,丁酸比例提高22%。本试验表明,血BHB浓度受能量平衡和饲粮成分组成的影响。我们的研究还表明,从准备4周开始提供高能玉米青贮饲料可以防止妊娠后期出现负能量平衡,类似于在草豆科青贮饲料中添加磨碎的玉米。
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引用次数: 0
Is social support mediated by social relationship strength in pigs? 猪的社会支持是否受社会关系强度的调节?
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-10-24 DOI: 10.1016/j.animal.2025.101693
S. Khatiwada, P. Seddaiu, A. Jaszczyk, I. Camerlink
Social support from an individual to another can act as a buffer against stress (i.e. social buffering) for the recipient. While it is known that many species are sensitive to social buffering, including farm animals, the role of the social relationship strength remains largely unclear. The aim of this study was to investigate whether the behavioural and physiological responses of an animal exposed to a stressor were influenced by the strength of the social relationship to the partner present during the event. We hypothesised that pigs with a strong social relationship to the partner (buddy) would show a reduced stress response. Focal pigs (n = 34) of 4 months old were exposed to a mildly stressful scenario (being alone in a weighcrate), followed by the presence of a sibling with either a strong or weak prior social association. Behavioural indicators of stress and social behaviour were recorded, alongside salivary cortisol concentrations at four time points. Pigs paired with a sibling with a strong relationship had less often their snouts in proximity, and for a shorter total duration, and had less often their heads in proximity. They also made more low−pitch vocalisations. Cortisol concentrations increased following the event, but no significant differences were observed between treatment groups. Buddies mostly remained calm but showed variation in their contact−seeking behaviour. Female buddies differed from males in their ability to provide social support. These findings suggest that the relationship strength has an influence on the stress-related behaviour of the focal pig but may not be sufficient to elicit measurable hormonal changes. Overall, the results indicate that social relationships between pigs are complex, with close companionship being important for their ability to cope with stressful events.
从一个人到另一个人的社会支持可以作为接受者对抗压力的缓冲(即社会缓冲)。虽然已知许多物种对社会缓冲很敏感,包括农场动物,但社会关系强度的作用在很大程度上仍不清楚。本研究的目的是调查动物暴露于压力源时的行为和生理反应是否受到事件中与伴侣的社会关系强度的影响。我们假设,与伴侣(伙伴)有强烈社会关系的猪会表现出较低的压力反应。4个月大的焦点猪(n = 34)暴露于轻度压力情景(单独在称重箱中),随后有一个兄弟姐妹存在,其先前的社会联系或强或弱。在四个时间点记录压力和社会行为的行为指标,以及唾液皮质醇浓度。与兄弟姐妹关系密切的猪配对时,它们的鼻子靠近的频率更低,总持续时间更短,而且它们的头靠近的频率也更低。它们也会发出更多的低音。皮质醇浓度在事件发生后升高,但在治疗组之间没有观察到显著差异。伙伴们大多保持冷静,但在寻求联系的行为上表现出了变化。女性伙伴提供社会支持的能力与男性不同。这些发现表明,关系强度对焦点猪的压力相关行为有影响,但可能不足以引起可测量的激素变化。总的来说,结果表明猪之间的社会关系是复杂的,亲密的陪伴对它们应对压力事件的能力很重要。
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引用次数: 0
Review: Peer social bonds in farm animals 回顾:农场动物的同伴社会关系。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-10-23 DOI: 10.1016/j.animal.2025.101687
S. Goumon , S. Jowett , S. Khatiwada , I. Camerlink
Peer social bonds may be defined as relationships involving frequent and non-random (i.e. preferential) mutual affiliative associations and interactions between peers (excluding parental and sexual relationships) that are consistent across a biologically relevant time frame and behavioural states, and lead to stress modulation. Hence, these bonds can be defined based on the following four criteria: (1) social preference, (2) consistency of preferences, (3) stress modulation, and (4) symmetry or reciprocity of behaviours. These have been studied in wild animals, particularly primates, and shown to provide fitness benefits. In farm animals, behavioural studies increasingly report social bonds. Yet, it is unclear whether there is sound evidence to draw such conclusions. This systematic review aims to discuss the current knowledge of peer social bonds in farm animals, further assessing the evidential robustness of the literature. We also identify key knowledge gaps and provide recommendations for future studies. The retrieved literature included 47 papers covering a range of species including cows (n = 18), pigs (n = 9), sheep (n = 6), horses (n = 4), donkeys (n = 1), goats (n = 3), chickens (n = 3), and quails (n = 3). In some farm animal species (pigs, cows, horses), there is evidence of variation in strength (e.g. frequency) and/or non-randomness of interactions and associations between dyads, potentially representing peer bonds. However, there is currently insufficient research on the other criteria to draw conclusions on the existence of peer social bonds under farm conditions. Overall, studies face methodological challenges in the assessment of social bonds, which is further complicated by housing and husbandry conditions on commercial farms. This review shows that various methods have been used to assess social relationships, but that many of these have shortcomings, and lack the nuance to make conclusions on peer social bonds. Hence, we provide recommendations to address the identified methodological gaps. Research on peer social bonds in farm animals is in its infancy, and we hope this work inspires other scientists to address this important topic diligently, while taking into consideration the implications of research conclusions on animal management in practice.
同伴社会纽带可以定义为同伴之间(不包括父母关系和性关系)的频繁和非随机(即优先)相互联系和互动的关系,这些关系在生物学相关的时间框架和行为状态中是一致的,并导致压力调节。因此,这些联系可以根据以下四个标准来定义:(1)社会偏好,(2)偏好的一致性,(3)压力调节,(4)行为的对称性或互惠性。这些已经在野生动物,特别是灵长类动物身上进行了研究,并被证明对健康有益。在农场动物中,行为学研究越来越多地报告了社会关系。然而,目前尚不清楚是否有可靠的证据来得出这样的结论。本系统综述旨在讨论农场动物同伴社会关系的当前知识,进一步评估文献的证据稳健性。我们还确定了关键的知识差距,并为未来的研究提供建议。共检索文献47篇,涵盖了牛(n = 18)、猪(n = 9)、羊(n = 6)、马(n = 4)、驴(n = 1)、山羊(n = 3)、鸡(n = 3)和鹌鹑(n = 3)等物种。在一些农场动物物种(猪、牛、马)中,有证据表明,二联体之间的相互作用和关联在强度(例如频率)和/或非随机性方面存在差异,可能代表同伴关系。然而,目前对其他标准的研究不足,无法得出关于农场条件下同伴社会关系存在的结论。总的来说,研究在评估社会联系方面面临着方法上的挑战,而商业农场的住房和饲养条件使这一问题进一步复杂化。这篇综述表明,各种各样的方法已经被用来评估社会关系,但其中许多都有缺点,并且缺乏对同伴社会关系做出结论的细微差别。因此,我们提供建议,以解决已确定的方法差距。对农场动物同伴社会关系的研究还处于起步阶段,我们希望这项工作能激励其他科学家勤奋地解决这个重要的问题,同时考虑到研究结论对动物管理实践的影响。
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引用次数: 0
Genetic parameters of slaughter traits measured on Greylag geese after induction of spontaneous liver steatosis 自发性肝脂肪变性诱导灰鹅屠宰性状的遗传参数测定
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-10-23 DOI: 10.1016/j.animal.2025.101689
H. Chapuis , T. Ruer , J. Arroyo , M-D. Bernadet , M. Blanchet , C.M.D. Bonnefont , P. Gouraud , A. Hazard , A. Mathiaud , C. Molette , C. Raybaud , X. Fernandez
Previous studies have demonstrated the possibility of inducing hepatic steatosis in geese without resorting to force-feeding, although results were highly variable. The aim of this study was to estimate the genetic parameters of traits of interest for the foie gras industry (liver weight and carcass cut weights) obtained after induction of steatosis without force-feeding. This represents a preliminary step towards designing a breeding programme aimed at producing foie gras in a more ethically acceptable way. Two successive experimental flocks, comprising several hundred birds each and derived from a commercial population in 2020 and 2021, were subjected to the induction protocol: feed restriction until 16 weeks of age, followed by ad libitum maize feeding for 10 weeks, during the autumn, in closed facilities with controlled lighting. The populations included nearly equal numbers of males and females, and no significant difference in liver weight was observed between sexes, which is an additional advantage for selection and production. Estimated heritabilities were high (0.56 ± 0.10 for liver weight, 0.45 ± 0.10 for thigh weight, 0.69 ± 0.11 for breast muscle weight), indicating strong potential for improvement of these traits through selection. Moreover, the genetic correlations between liver weight and other traits of interest were either favourable or negligible, particularly with carcass weight (0.62 ± 0.12) and thigh weight (0.69 ± 0.11). Growth traits were also heritable (> 0.6 for BWs at 9 and 14 weeks), with BW gain between these ages moderately heritable (0.33 ± 0.04) and positively correlated with liver weight (0.48 ± 0.14). These results highlight the potential of implementing selection for foie gras production without force-feeding. In addition, an empirical scoring system for liver appearance was also evaluated as a simple alternative to advanced phenotyping tools. This rapid visual classification proved highly heritable (0.67 ± 0.11) and displayed the same favourable correlations with other traits as liver weight itself. This suggests that visual scoring could even replace direct liver weighing in selection programmes, at least in the early stages, thus offering breeders a fast and inexpensive method to identify families with a greater predisposition to hepatic steatosis. Overall, these findings open the way to more sustainable and welfare-friendly foie gras production, in line with societal expectations on animal welfare, while offering breeders practical tools to initiate selection in commercial populations.
先前的研究已经证明了在不诉诸强迫喂养的情况下诱导鹅肝脂肪变性的可能性,尽管结果是高度可变的。本研究的目的是估计在不强迫喂食诱导脂肪变性后获得的鹅肝工业感兴趣的性状(肝脏重量和胴体切割重量)的遗传参数。这代表着朝着设计一项旨在以更合乎道德的方式生产鹅肝的育种计划迈出了初步的一步。从2020年和2021年的一个商业种群中提取的两个连续的实验群,每群有数百只鸟,接受诱导方案:限制饲料直到16周龄,然后在秋季在受控照明的封闭设施中自由饲喂10周玉米。种群中雄性和雌性的数量几乎相等,并且在肝脏重量上没有观察到性别之间的显著差异,这是选择和生产的额外优势。估计遗传力很高(肝脏重量0.56±0.10,大腿重量0.45±0.10,胸肌重量0.69±0.11),表明通过选择这些性状有很大的改善潜力。此外,肝脏重量与其他相关性状之间的遗传相关性要么良好,要么可以忽略不计,尤其是胴体重(0.62±0.12)和大腿重(0.69±0.11)。生长性状也具有遗传性(9周和14周体重>; 0.6),这两个年龄的体重增重具有中等遗传性(0.33±0.04),与肝脏重量呈正相关(0.48±0.14)。这些结果突出了在不强制喂养的情况下实施鹅肝生产选择的潜力。此外,肝脏外观的经验评分系统也被评估为一种简单的替代先进的表型工具。这种快速的视觉分类被证明是高度遗传的(0.67±0.11),并显示出与肝脏重量本身等其他性状相同的有利相关性。这表明视觉评分甚至可以在选择程序中取代直接的肝脏称重,至少在早期阶段,从而为育种者提供一种快速而廉价的方法来识别更容易发生肝脏脂肪变性的家族。总的来说,这些发现为更可持续和福利友好的鹅肝生产开辟了道路,符合社会对动物福利的期望,同时为育种者提供了实用的工具,以启动商业种群的选择。
{"title":"Genetic parameters of slaughter traits measured on Greylag geese after induction of spontaneous liver steatosis","authors":"H. Chapuis ,&nbsp;T. Ruer ,&nbsp;J. Arroyo ,&nbsp;M-D. Bernadet ,&nbsp;M. Blanchet ,&nbsp;C.M.D. Bonnefont ,&nbsp;P. Gouraud ,&nbsp;A. Hazard ,&nbsp;A. Mathiaud ,&nbsp;C. Molette ,&nbsp;C. Raybaud ,&nbsp;X. Fernandez","doi":"10.1016/j.animal.2025.101689","DOIUrl":"10.1016/j.animal.2025.101689","url":null,"abstract":"<div><div>Previous studies have demonstrated the possibility of inducing hepatic steatosis in geese without resorting to force-feeding, although results were highly variable. The aim of this study was to estimate the genetic parameters of traits of interest for the <em>foie gras</em> industry (liver weight and carcass cut weights) obtained after induction of steatosis without force-feeding. This represents a preliminary step towards designing a breeding programme aimed at producing <em>foie gras</em> in a more ethically acceptable way. Two successive experimental flocks, comprising several hundred birds each and derived from a commercial population in 2020 and 2021, were subjected to the induction protocol: feed restriction until 16 weeks of age, followed by <em>ad libitum</em> maize feeding for 10 weeks, during the autumn, in closed facilities with controlled lighting. The populations included nearly equal numbers of males and females, and no significant difference in liver weight was observed between sexes, which is an additional advantage for selection and production. Estimated heritabilities were high (0.56 ± 0.10 for liver weight, 0.45 ± 0.10 for thigh weight, 0.69 ± 0.11 for breast muscle weight), indicating strong potential for improvement of these traits through selection. Moreover, the genetic correlations between liver weight and other traits of interest were either favourable or negligible, particularly with carcass weight (0.62 ± 0.12) and thigh weight (0.69 ± 0.11). Growth traits were also heritable (&gt; 0.6 for BWs at 9 and 14 weeks), with BW gain between these ages moderately heritable (0.33 ± 0.04) and positively correlated with liver weight (0.48 ± 0.14). These results highlight the potential of implementing selection for <em>foie gras</em> production without force-feeding. In addition, an empirical scoring system for liver appearance was also evaluated as a simple alternative to advanced phenotyping tools. This rapid visual classification proved highly heritable (0.67 ± 0.11) and displayed the same favourable correlations with other traits as liver weight itself. This suggests that visual scoring could even replace direct liver weighing in selection programmes, at least in the early stages, thus offering breeders a fast and inexpensive method to identify families with a greater predisposition to hepatic steatosis. Overall, these findings open the way to more sustainable and welfare-friendly <em>foie gras</em> production, in line with societal expectations on animal welfare, while offering breeders practical tools to initiate selection in commercial populations.</div></div>","PeriodicalId":50789,"journal":{"name":"Animal","volume":"19 12","pages":"Article 101689"},"PeriodicalIF":4.2,"publicationDate":"2025-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145521175","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genetic influence underlying individual variation in vaccine responses in a White Leghorn laying hen line 白来窝蛋鸡品系疫苗反应个体差异的遗传影响。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-10-17 DOI: 10.1016/j.animal.2025.101686
A. Racanati , T. Tribout , A. Al. M. Sabuj , F. Blanc , B.C.D. Cuyabano , A. Lecoeur , S. Brard-Fudulea , N. Bruneau , D. Gourichon , L. Becot , T. Burlot , F. Calenge , M-H. Pinard-van der Laan
Vaccination is an essential part of poultry health, yet considerable variability in vaccine efficacy among individuals poses challenges for disease control and productivity. The genetic basis underlying this variability remains poorly understood. This study aimed at providing new insights into the genetic architecture underlying vaccine responses in poultry by identifying the genetic loci controlling the immune response to several vaccines. To reach this purpose, we studied 537 White Leghorn hens, focusing on vaccines against Newcastle Disease Virus (NDV), Infectious bronchitis virus, Avian encephalomyelitis virus and Avian pneumovirus. Humoral immune responses were assessed for all vaccinations at multiple postvaccination time points, and cellular immune responses were evaluated for the NDV vaccine at the end of the experiment. Important individual variabilities in vaccine responses were observed within this population, with some animals failing to mount antibody responses to the vaccinations. Heritability estimates among responder animals for antibody levels treated as a continuous trait (51 to 472 animals) indicated low to moderate genetic influence (0.00–0.39), whereas analysing vaccine response as a binary trait (392 to 537 animals), distinguishing responders from non-responders, revealed a moderate to high genetic contribution (0.22–0.40). Furthermore, genetic and phenotypic correlation analyses revealed complex relationships among vaccine response traits, including weak positive and even negative genetic correlations, both across different vaccines and within the same vaccination at different time points. Genome-wide association studies identified significant quantitative trait loci (QTLs) on chromosomes 1, 4, 5, 8, 11, 15, and 28, associated with immune traits. QTLs were detected for both levels of the response and responders vs non-responder’s traits. Functional annotation of these loci highlighted several genes of interest, including MKNK1, TRABD2B, BRCA2, ROBO1, HMGB1, MAPK3, CLEC3A, MAF, ZAP-70, and RFX2, as well as the non-coding RNA vaultRNA, all of which may contribute to immune response variability. In addition, Gene Set Enrichment Analysis identified immune-related pathways, particularly those involved in T-cell responses and plasmacytoid dendritic cell activation, further supporting the role of genetic regulation in vaccine-induced immunity. These findings demonstrate that a complex genetic regulation significantly contributes to vaccine response variability in White Leghorn hens. By pinpointing candidate genes and pathways, this study shows that incorporating immune traits into selective breeding programmes may ultimately contribute to improved vaccine efficacy in production systems.
疫苗接种是家禽健康的重要组成部分,但个体之间疫苗效力的巨大差异对疾病控制和生产力构成了挑战。这种变异背后的遗传基础仍然知之甚少。本研究旨在通过鉴定控制几种疫苗免疫应答的基因位点,为家禽疫苗应答的遗传结构提供新的见解。为了达到这一目的,我们研究了537只白来港鸡,重点研究了新城疫病病毒(NDV)、传染性支气管炎病毒、禽脑脊髓炎病毒和禽肺炎病毒的疫苗。在接种后多个时间点评估所有疫苗的体液免疫应答,在实验结束时评估NDV疫苗的细胞免疫应答。在该人群中观察到疫苗反应的重要个体差异,一些动物未能对疫苗接种产生抗体反应。在应答动物中,将抗体水平作为一种连续性状(51 - 472只动物)进行遗传力估计,表明遗传影响低至中等(0.00-0.39),而将疫苗应答作为一种二元性状(392 - 537只动物)进行分析,区分应答动物和无应答动物,显示遗传贡献中至高(0.22-0.40)。此外,遗传和表型相关分析揭示了疫苗反应特征之间的复杂关系,包括不同疫苗之间以及不同时间点同一疫苗接种内的弱正甚至负遗传相关性。全基因组关联研究在染色体1、4、5、8、11、15和28上发现了与免疫性状相关的显著数量性状位点(qtl)。在反应水平和反应者与非反应者的性状中均检测到qtl。这些基因座的功能注释突出了几个感兴趣的基因,包括MKNK1、TRABD2B、BRCA2、ROBO1、HMGB1、MAPK3、cle3a、MAF、ZAP-70和RFX2,以及非编码RNA vaulna,所有这些基因都可能有助于免疫反应的变异性。此外,基因集富集分析确定了免疫相关途径,特别是那些参与t细胞反应和浆细胞样树突状细胞活化的途径,进一步支持了基因调控在疫苗诱导免疫中的作用。这些发现表明,一种复杂的遗传调控显著地影响了白来窝鸡的疫苗应答变异性。通过确定候选基因和途径,这项研究表明,将免疫性状纳入选择性育种计划可能最终有助于提高生产系统中的疫苗效力。
{"title":"Genetic influence underlying individual variation in vaccine responses in a White Leghorn laying hen line","authors":"A. Racanati ,&nbsp;T. Tribout ,&nbsp;A. Al. M. Sabuj ,&nbsp;F. Blanc ,&nbsp;B.C.D. Cuyabano ,&nbsp;A. Lecoeur ,&nbsp;S. Brard-Fudulea ,&nbsp;N. Bruneau ,&nbsp;D. Gourichon ,&nbsp;L. Becot ,&nbsp;T. Burlot ,&nbsp;F. Calenge ,&nbsp;M-H. Pinard-van der Laan","doi":"10.1016/j.animal.2025.101686","DOIUrl":"10.1016/j.animal.2025.101686","url":null,"abstract":"<div><div>Vaccination is an essential part of poultry health, yet considerable variability in vaccine efficacy among individuals poses challenges for disease control and productivity. The genetic basis underlying this variability remains poorly understood. This study aimed at providing new insights into the genetic architecture underlying vaccine responses in poultry by identifying the genetic loci controlling the immune response to several vaccines. To reach this purpose, we studied 537 White Leghorn hens, focusing on vaccines against Newcastle Disease Virus (<strong>NDV</strong>), Infectious bronchitis virus, Avian encephalomyelitis virus and Avian pneumovirus. Humoral immune responses were assessed for all vaccinations at multiple postvaccination time points, and cellular immune responses were evaluated for the NDV vaccine at the end of the experiment. Important individual variabilities in vaccine responses were observed within this population, with some animals failing to mount antibody responses to the vaccinations. Heritability estimates among responder animals for antibody levels treated as a continuous trait (51 to 472 animals) indicated low to moderate genetic influence (0.00–0.39), whereas analysing vaccine response as a binary trait (392 to 537 animals), distinguishing responders from non-responders, revealed a moderate to high genetic contribution (0.22–0.40). Furthermore, genetic and phenotypic correlation analyses revealed complex relationships among vaccine response traits, including weak positive and even negative genetic correlations, both across different vaccines and within the same vaccination at different time points. Genome-wide association studies identified significant quantitative trait loci (<strong>QTLs</strong>) on chromosomes 1, 4, 5, 8, 11, 15, and 28, associated with immune traits. QTLs were detected for both levels of the response and responders vs non-responder’s traits. Functional annotation of these loci highlighted several genes of interest, including <em>MKNK1, TRABD2B, BRCA2, ROBO1, HMGB1, MAPK3, CLEC3A, MAF, ZAP-70, and RFX2</em>, as well as the non-coding RNA vaultRNA, all of which may contribute to immune response variability. In addition, Gene Set Enrichment Analysis identified immune-related pathways, particularly those involved in T-cell responses and plasmacytoid dendritic cell activation, further supporting the role of genetic regulation in vaccine-induced immunity. These findings demonstrate that a complex genetic regulation significantly contributes to vaccine response variability in White Leghorn hens. By pinpointing candidate genes and pathways, this study shows that incorporating immune traits into selective breeding programmes may ultimately contribute to improved vaccine efficacy in production systems.</div></div>","PeriodicalId":50789,"journal":{"name":"Animal","volume":"19 12","pages":"Article 101686"},"PeriodicalIF":4.2,"publicationDate":"2025-10-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145496709","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Faecal inflammatory biomarkers as non-invasive indicators of feed intake status in weaned piglets 粪便炎症生物标志物作为断奶仔猪采食量状态的非侵入性指标。
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-10-16 DOI: 10.1016/j.animal.2025.101684
J. Suppi , P. Salgado-López , E. Llauradó-Calero , J. Coma , A. Pelegrí-Pineda , Y. Saco , A. Bassols , M. Farré , D. Solà-Oriol
Early weaning in piglets commonly leads to a postweaning (PW) fasting period, compromising intestinal integrity and triggering inflammation, overall affecting welfare and growth. Despite the well-documented consequences of fasting, no feasible and non-invasive method exists to monitor feeding patterns in postweaned piglets. Therefore, this study aimed to evaluate the use of faecal inflammatory biomarkers—calprotectin (fCal), lipocalin-2 (LCN-2), myeloperoxidase (MPO), and adenosine deaminase (ADA)—to detect whether an animal is eating or not by correlating fasting with its presence in faeces. The trial involved 623 weaned piglets (21 days) which were weighed at days 0, 3 and 10 PW. A blue-coloured creep-feed was provided before and after weaning to qualitatively trace feed consumption via rectal swabs. Piglets were assessed for feeding status at weaning and on day 3 PW. Additionally, 120 animals were selected to monitor feed status daily over the first 4 days PW. Animals were classified into three categories: creep-feed eaters (CFE), began feed intake preweaning and maintained it PW; PW eaters (PWE), started consuming feed PW; and non-eaters (NE), which did not consume any feed. Out of the 120 piglets, faecal samples were obtained from 77 piglets: CFE (n = 19 sampled from days 0–3), PWE (n = 7 on day 1, n = 14 on day 2, n = 33 on day 3), and NE (n = 30 on day 0, n = 28 on day 1, n = 27 on day 2, n = 25 on day 3). Among all piglets, 4.5% were classified as CFE, 69.5% as PWE, and 26% as NE. On average, CFE gained 44 g/day more than PWE, and 100 g/day more than NE in the first 10 days of PW (P < 0.001). The biomarkers fCal, LCN-2, and MPO differed by eater category (P ≤ 0.014), while ADA increased over time (P = 0.001) without differences between categories. Calprotectin and LCN-2 were higher in NE than CFE, correlating with reduced growth (r ≤ −0.29, P ≤ 0.044). Conversely, MPO was higher in CFE than NE (P < 0.001), with no growth association. Calprotectin showed strong discriminatory power between CFE and NE, with an area under the curve of 0.86, sensitivity of 86%, and specificity of 69%. Calprotectin and LCN-2 increased with fasting and correlated negatively with growth, highlighting their utility as biomarkers of low feed intake−related inflammation, with fCal being the most sensitive. Myeloperoxidase and ADA showed no feeding-related associations.
仔猪早期断奶通常会导致断奶后禁食期,损害肠道完整性并引发炎症,总体上影响福利和生长。尽管有充分的证据表明禁食的后果,但目前还没有可行的非侵入性方法来监测断奶仔猪的喂养模式。因此,本研究旨在评估粪便炎症生物标志物——钙保护素(fCal)、脂钙素-2 (LCN-2)、髓过氧化物酶(MPO)和腺苷脱氨酶(ADA)的使用,通过将禁食与粪便中这些酶的存在联系起来,来检测动物是否在进食。试验选取623头断奶仔猪(21日龄),分别在0、3和10 PW时称重。断奶前后分别提供蓝色爬行饲料,通过直肠拭子定性追踪饲料消耗。分别在断奶和第3天评估仔猪的摄食状况。另外,选取120只动物,在PW前4天每天监测饲料状况。将动物分为蠕食型(CFE),在断奶前开始采食并维持PW;PW食用者(PWE)开始消耗饲料PW;和不进食动物(NE),它们不吃任何饲料。在120头仔猪中,采集了77头仔猪的粪便样本:CFE(0-3天n = 19)、PWE(第1天n = 7、第2天n = 14、第3天n = 33)和NE(第0天n = 30、第1天n = 28、第2天n = 27、第3天n = 25)。在所有仔猪中,4.5%为CFE, 69.5%为PWE, 26%为NE。在PW的前10 d, CFE比PWE平均增加44 g/d,比NE平均增加100 g/d
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引用次数: 0
Behavioural overdominance of honeybee colonies kept simultaneously on standard-cell and small-cell combs 同时饲养在标准蜂窝和小蜂窝上的蜂群的行为优势
IF 4.2 2区 农林科学 Q1 AGRICULTURE, DAIRY & ANIMAL SCIENCE Pub Date : 2025-10-15 DOI: 10.1016/j.animal.2025.101682
P. Dziechciarz , G. Borsuk , A. Strachecka , K. Olszewski
Overdominance is often observed in the case of intergenic interactions and is referred to as one of the major factors determining hybrid vigour or heterosis. Placing combs built on both a wax foundation with small cells (cell size of 4.9 mm) and a wax foundation with standard cells (cell size of 5.5 mm) in the brood chamber resulted in the emergence of the behavioural overdominance of such colonies. In order to investigate this phenomenon in terms of the use value of bee colonies kept simultaneously on two types of combs, they were compared to colonies kept exclusively on small-cell combs and to colonies kept exclusively on combs built on a standard-cell wax foundation. Increasing the variation in cell size in honey bee colony nests by placing both small-cell combs and standard-cell combs in it resulted in overdominance in terms of functional properties, i.e. an increase in the productivity of colonies. Therefore, modifying the inanimate element of the bee colony nest environment, specifically the comb, produced an outcome analogous to hybrid vigour or heterosis, which is the result of increased intraindividual genetic variation. In addition to polyandry, the different cell sizes in the combs, where colonies raise their workers, may be an additional factor in the nest environment that increases the phenotypic variation of workers, which may translate into a more effective division of labour expressed by better adaptation and higher productivity of bee colonies. The role of combs, which are a non-living element of the nest environment, in the functioning of the superorganism of a honey bee colony remains both poorly understood and underestimated.
在基因间相互作用的情况下经常观察到显性,它被认为是决定杂种活力或杂种优势的主要因素之一。将蜂窝放置在小蜂房的蜡基上(蜂房尺寸为4.9毫米)和标准蜂房的蜡基上(蜂房尺寸为5.5毫米),导致了这类蜂群行为优势的出现。为了研究同时饲养在两种蜂箱上的蜂群的使用价值,将它们与完全饲养在小蜂窝蜂箱上的蜂群和完全饲养在标准蜂窝蜂蜡基础上的蜂群进行了比较。通过在蜂群巢中放置小细胞蜂巢和标准细胞蜂巢来增加蜂群巢中细胞大小的变化,在功能特性方面产生了优势,即增加了蜂群的生产力。因此,修改蜂群巢穴环境的无生命因素,特别是蜂巢,产生了类似于杂交活力或杂种优势的结果,这是个体内遗传变异增加的结果。除了一妻多夫制之外,蜂群养育工蜂的蜂巢中不同的细胞大小可能是巢环境中增加工蜂表型变异的另一个因素,这可能转化为更有效的劳动分工,表现为蜂群更好的适应性和更高的生产力。蜂巢是蜂巢环境中的一个非生命元素,在蜜蜂群体的超级有机体的功能中,蜂巢的作用仍然知之甚少,甚至被低估了。
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