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Enhanced phytoremediation of Cd-contaminated soil by Solanum nigrum L. through the addition of earthworm and organic wastes 通过添加蚯蚓和有机废物加强黑茄科植物对镉污染土壤的植物修复作用
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-11-13 DOI: 10.1186/s40538-024-00696-5
Yang Luo, Yu Yang, Jiang Liu, Yangzhou Xiang, Ziyan Duan, Xuqiang Luo

Background

Phytoremediation is considered to have great development potential to deal with soil Cd contamination, and assisted measures are necessary to improve the efficiency of Cd extraction from soil by hyperaccumulator plants. Based on this, a pot experiment was conducted to determine the growth indices, physiological indices, Cd content of Solanum nigrum L. and soil bacterial community under single and combined application of earthworm and organic wastes [chili straw and spent mushroom substrate (SMS)].

Results

Pot experiments revealed that adding earthworms, chili straw, or SMS alone did not affect the growth of S. nigrum. However, the combination of earthworms + chili straw and earthworms + SMS, significantly increased the total dry weight of S. nigrum by 20.94% and 74.69% compared to the control. The chlorophyll content of S. nigrum in the treatment groups with earthworms, SMS, and earthworms + SMS was also significantly higher than that in the control. Meanwhile, adding earthworms and organic wastes also reduced the malondialdehyde content in the leaves of S. nigrum and increased the activity of superoxide dismutase and peroxidase. In addition, applying earthworm + chili straw and earthworm + SMS also increased the availability of Cd in the soil, promoted the absorption of Cd by S. nigrum, and significantly increased its total extraction amount of Cd by 41.55% and 92.83%, respectively. The diversity of soil bacterial communities increased when earthworms and organic wastes coexisted. Adding earthworms and organic wastes also increased the relative abundance of Verrucomicrobia at the phylum level and of Sphingomonas, Ohtaekwangia, Saccharibacteria_genera_incertae_sedis, and Aridibacter at the genus level in the soil. At the same time, this process reduces the relative abundance of Proteobacteria and Firmicutes at the phylum level and Devosia and Bacillus at the genus level.

Conclusions

The combined application of earthworms and SMS enhanced phytoextraction of Cd-contaminated soil by S. nigrum. It also improved soil nutrient conditions and reduced external environmental stress on bacteria, increasing their diversity and restructuring the community structure, which was conducive to forming a good soil microecological environment. The results of this study can provide a scientific basis for the treatment of Cd contaminated soil, but field experiments need to be conducted for verification and optimization before practical application in the future.

Graphical Abstract

背景植物修复被认为在处理土壤镉污染方面具有巨大的发展潜力,有必要采取辅助措施来提高高积累植物从土壤中提取镉的效率。基于此,我们进行了一项盆栽实验,以确定在单独施用和联合施用蚯蚓和有机废物(辣椒秸秆和废蘑菇基质(SMS))的情况下,黑木耳的生长指数、生理指数、镉含量和土壤细菌群落。但是,与对照相比,蚯蚓+辣椒秸秆和蚯蚓+SMS 的组合能显著增加金线莲的总干重,分别增加了 20.94% 和 74.69%。加入蚯蚓、SMS 和蚯蚓 + SMS 的处理组中,黑奴的叶绿素含量也明显高于对照组。同时,添加蚯蚓和有机废弃物还能降低黑奴叶片中丙二醛的含量,提高超氧化物歧化酶和过氧化物酶的活性。此外,施用蚯蚓+辣椒秸秆和蚯蚓+SMS 还增加了土壤中镉的可利用性,促进了黑麦草对镉的吸收,使其镉的总提取量分别显著增加了 41.55% 和 92.83%。蚯蚓和有机废物共存时,土壤细菌群落的多样性增加。添加蚯蚓和有机废物还增加了土壤中蚯蚓微生物门(Verrucomicrobia)和鞘氨单胞菌属(Sphingomonas)、Ohtaekwangia、酵母菌属(Saccharibacteria_genera_incertae_sedis)和旱杆菌属(Aridibacter)的相对丰度。结论蚯蚓和 SMS 的联合应用提高了黑褐藻对镉污染土壤的植物萃取能力。同时,还改善了土壤养分条件,减轻了外部环境对细菌的压力,增加了细菌的多样性,调整了群落结构,有利于形成良好的土壤微生态环境。本研究的结果可为镉污染土壤的处理提供科学依据,但在今后的实际应用中,还需要进行田间试验进行验证和优化。
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引用次数: 0
The auxin-like effect of substrate and auxin sensitivity of plant modulate the PGPR activity of Lysinibacillus pinottii sp. nov. PB211 底物的类辅助素效应和植物对辅助素的敏感性调控皮诺氏赖氨酸杆菌(Lysinibacillus pinottii sp.PB211
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-11-12 DOI: 10.1186/s40538-024-00691-w
Manuel Pantoja-Guerra, Nelson Valero-Valero, Camilo A. Ramirez

Background

Bacterial auxin production is a mechanism that promotes plant growth. However, it can also be linked to deleterious rhizobacteria and plant-pathogenic bacteria. High levels of auxins have the potential to impede plant growth. Additionally, certain environmental factors can enhance auxin activity and impact the activity of plant growth-promoting rhizobacteria (PGPR).

Results

In this work, we boarded how the auxin-like effect in the soil–plant system modulates the plant growth-promoting activity of Lysinibacillus pinottii sp. nov. PB211. The effect of humified organic matter (HOM) soil was simulated with humic acids (HA) coming from vermicompost; the spectral configuration (13C-CP-TOSS-NMR and FTIR) and coleoptile elongation test indicated its bioactivity. Cucumber exhibits a PGP effect of PB211 and HA at a lower concentration compared to corn. This disparity agrees with the differential sensitivity to auxins of both plant models. Monocot plants, such as corn, generally exhibit greater resistance to exogenous auxin activity compared to eudicot plants, such as cucumber. The presence of HA in the growth substrate (sand) is found to modulate the PGPR activity of PB211, resulting in a loss of PGPR activity.

Conclusions

The findings highlight the importance of considering the cumulative auxin-like effects in the soil–plant system when utilizing bacterial inoculants for plant growth promotion in agriculture.

Graphical Abstract

背景细菌产生的辅助素是一种促进植物生长的机制。然而,它也可能与有害根瘤菌和植物病原菌有关。高水平的辅酶有可能阻碍植物生长。此外,某些环境因素会增强辅酶的活性,并影响植物生长促进根瘤菌(PGPR)的活性。结果在这项工作中,我们研究了土壤-植物系统中的类辅酶效应如何调节 Lysinibacillus pinottii sp.PB211。用来自蛭石堆肥的腐殖酸(HA)模拟了腐殖化有机物(HOM)土壤的效应;其光谱构型(13C-CP-TOSS-NMR 和 FTIR)和叶柄伸长试验表明了其生物活性。与玉米相比,黄瓜在较低浓度下表现出 PB211 和 HA 的 PGP 效应。这种差异与两种植物模型对辅助剂的不同敏感性相吻合。与黄瓜等裸子植物相比,玉米等单子叶植物通常对外源辅助素活性表现出更强的抵抗力。结论:研究结果突出表明,在农业中利用细菌接种剂促进植物生长时,必须考虑土壤-植物系统中类似于辅助素的累积效应。
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引用次数: 0
Insights into larval development and protein biochemical alterations of Agrotis ipsilon (Hufnagel) (Lepidoptera: Noctuidae) following Beauveria bassiana and Solanum lycopersicum treatments Beauveria bassiana 和 Solanum lycopersicum 处理 Agrotis ipsilon (Hufnagel) (鳞翅目:夜蛾科)后幼虫发育和蛋白质生化变化的启示
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-11-07 DOI: 10.1186/s40538-024-00692-9
Ghada E. Abd-Allah, Moataz A. M. Moustafa, Fatma S. Ahmed, Eman El-said, Enayat M. Elqady, Lina A. Abou El-Khashab, Hend H. A. Salem

Background

The polyphagous notorious pest, black cutworm, Agrotis ipsilon (Hufnagel) (Lepidoptera: Noctuidae), cause significant production losses due to its distinctive feeding and hiding behavior, making it particularly challenging to control it with conventional methods. Therefore, sustainable agriculture demands more effective and environmentally safe pest control solutions. This study aimed to investigate the toxicity of two insecticide alternatives, the entomopathogenic fungus (EPF) Beauveria bassiana and Solanum lycopersicum extract (Tomato plant crude extract, TPCE), using two bioassay methods: the poisoned bait method and the leaf dipping method. In addition, the impact of these biological tools on larval development and protein profiles was evaluated.

Results

The bait application of both tested materials exhibited higher toxicity than the leaf dipping method, as indicated by the toxicity index. The LC50 values for B. bassiana were 1.6 × 10⁸ and 1.8 × 10⁶ conidia ml−1 using the leaf dipping method and poisoned baits method, respectively. For TPCE, the LC50 values were 4.35 and 1.51 mg ml−1 for the same methods, respectively. In addition, sublethal concentrations of both materials altered the larval and pupal durations. B. bassiana significantly reduced the concentration of larval hemolymph protein. A maximum of 12 protein bands in the control sample, with molecular weights (Mw) ranging between 35 and 120 kDa, were detected by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE). In B. bassiana-treated larvae, ten bands were detected with Mw ranging from 35 to 120 kDa. At least seven bands were detected in TPCE-treated larvae, with Mw ranging from 35 to 97 kDa.

Conclusions

The findings of this study can be integrated into management programs for A. ipsilon. In addition, the availability of B. bassiana and TPCE in Egypt and their cost-effectiveness as insecticide alternatives support their use in the management programs of this critical pest. These methods are particularly effective when applied in bait form.

Graphical Abstract

背景臭名昭著的多食性害虫--黑刺虫(Agrotis ipsilon (Hufnagel))(鳞翅目:夜蛾科),由于其独特的取食和藏匿行为,会给生产造成重大损失,因此用传统方法控制这种害虫特别具有挑战性。因此,可持续农业需要更有效和环境安全的害虫控制解决方案。本研究旨在使用两种生物测定方法(毒饵法和浸叶法)研究两种杀虫剂替代品的毒性,即昆虫病原真菌(EPF)Beauveria bassiana 和番茄提取物(番茄植物粗提取物,TPCE)。此外,还评估了这些生物工具对幼虫发育和蛋白质特征的影响。结果从毒性指数来看,施用两种受试材料的毒饵比浸叶法毒性更高。浸叶法和毒饵法对 B. bassiana 的 LC50 值分别为 1.6 × 10⁸ 和 1.8 × 10⁶ 分生孢子 ml-1。对于 TPCE,相同方法的 LC50 值分别为 4.35 毫克毫升-1 和 1.51 毫克毫升-1。此外,两种材料的亚致死浓度都会改变幼虫和蛹的持续时间。B. bassiana 能明显降低幼虫血淋巴蛋白的浓度。十二烷基硫酸钠-聚丙烯酰胺凝胶电泳(SDS-PAGE)在对照样本中最多检测到 12 条蛋白质条带,分子量(Mw)介于 35 和 120 kDa 之间。在 B. bassiana 处理过的幼虫中,检测到 10 条 Mw 在 35 至 120 kDa 之间的条带。在 TPCE 处理过的幼虫中至少检测到 7 条带,分子量在 35 到 97 kDa 之间。此外,B. bassiana 和 TPCE 在埃及的可用性及其作为杀虫剂替代品的成本效益也支持将它们用于这种关键害虫的管理计划中。这些方法在以诱饵形式施用时尤其有效。
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引用次数: 0
The combination of nanoparticles and endophytes boosts Thyme (Thymus vulgaris L.) resistance to drought stress by elevating levels of phenolic compounds, flavonoids, and essential oils 纳米颗粒与内生菌的结合通过提高酚类化合物、类黄酮和精油的水平增强百里香(Thymeus vulgaris L.)对干旱胁迫的抵抗力
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-11-07 DOI: 10.1186/s40538-024-00682-x
Afsoun Kamyab, Davood Samsampour, Navid Ahmadinasab, Abdonnabi Bagheri
<div><h3>Background</h3><p>As climate change and water scarcity increasingly threaten agricultural productivity, enhancing plant resilience to drought has attracted great attention. This study explored the potential of combining Fe<sub>2</sub>O<sub>3</sub> nanoparticles (FeNPs), endophytic bacteria (EB), and endophytic fungi (EF) to boost drought tolerance in <i>Thymus vulgaris</i>. The research aimed to assess how these combined treatments affect the plant’s physiological responses and chemical composition under drought stress.</p><h3>Results</h3><p>A factorial experiment was designed using completely randomized design (CRD) method, incorporating four irrigation levels [100%, 75%, 50%, and 25% field capacity (FC)], four FeNPs concentrations (0, 0.5, 1, and 1.5 mg L<sup>−1</sup>), and three endophyte types (control, bacteria, and fungi). After extracting, purifying, identifying, and screening EB and EF from nine Lamiaceae species, the endophytes <i>Azospirillum lipoferum</i> and <i>Aspergillus oryzae</i> isolated from <i>Salvia mirzayanii</i> exhibited the highest drought resistance. The highest amounts of TFM (45.45 g) and TDM (21.56 g) were obtained using the combination of EB and FeNPs at 1 mg L<sup>−1</sup> under irrigation with 100% FC. At 25% FC, EB treatment increased the activities of polyphenol oxidase (PPO) and phenylalanine ammonia-lyase (PAL) by 62.12% and 18.23% compared to the control, respectively. In addition, under optimal humidity conditions, FeNP concentrations were higher than 0.5 mg L<sup>−1</sup> leading to a decrease in PPO activity. At 25% FC, the highest content of total phenols was observed with a 37.5% increase under EB treatment using 1 mg L<sup>−1</sup> of FeNPs, while the highest content of total flavonoids showed a 62.72% increase under EF treatment with 0.5 mg/L of FeNPs. The highest level of <i>p</i>-coumaric acid was obtained under EF (34.27% compared to control). At 25% FC, EB and FeNPs (1 mg L<sup>−1</sup>) increased the level of caffeic acid in thyme plants by 24.70% and 10.08%, respectively. In addition, inoculation with EB increased (11.9%) the content of ferulic acid in plants and the application of FeNPs as a foliar spray decreased the level of ferulic acid in thyme plants. The highest essential oil percentage at 25% FC was observed after inoculation with EF and FeNPs (0.5 mg L<sup>−1</sup>), resulting in significant increases of 14.7% and 82.12%, respectively, compared to the control. A decrease in irrigation level led to an increase in the percentage of essential oil in thyme plants while decreasing dominant essential oil compounds, thymol, and carvacrol. The levels of thymol and carvacrol in the essential oil were not affected by the interaction effects of drought stress, endophytes, and FeNPs. EF and FeNPs (1.5 mg L<sup>−1</sup>), respectively, caused significant increases of 17.44% and 29.87% compared to the control in the amount of thymol and significant increases of 13.75% and 31.01% in the amount o
背景随着气候变化和水资源短缺对农业生产力的威胁日益严重,提高植物的抗旱能力已引起人们的高度重视。本研究探讨了将 Fe2O3 纳米粒子(FeNPs)、内生细菌(EB)和内生真菌(EF)结合起来提高百里香耐旱性的潜力。研究旨在评估这些综合处理如何影响干旱胁迫下植物的生理反应和化学成分。结果 采用完全随机设计法(CRD)设计了一个因子实验,其中包括四种灌溉水平(100%、75%、50% 和 25% 田间能力 (FC))、四种 FeNPs 浓度(0、0.5、1 和 1.5 mg L-1)和三种内生菌类型(对照、细菌和真菌)。从九种唇形科植物中提取、纯化、鉴定和筛选 EB 和 EF 后,从丹参中分离出的内生菌 Azospirillum lipoferum 和 Aspergillus oryzae 表现出最高的抗旱性。在 100% FC 灌溉条件下,EB 和 FeNPs(1 mg L-1)组合的 TFM(45.45 克)和 TDM(21.56 克)含量最高。在 25% FC 条件下,与对照相比,EB 处理使多酚氧化酶(PPO)和苯丙氨酸氨解酶(PAL)的活性分别提高了 62.12% 和 18.23%。此外,在最佳湿度条件下,FeNP 浓度高于 0.5 mg L-1 会导致 PPO 活性下降。在 25% FC 条件下,使用 1 mg L-1 FeNPs 进行 EB 处理时,总酚含量最高,增加了 37.5%;而使用 0.5 mg/L FeNPs 进行 EF 处理时,总黄酮含量最高,增加了 62.72%。EF 处理中的对香豆酸含量最高(比对照组高 34.27%)。在 25% FC 条件下,EB 和 FeNPs(1 mg L-1)可使百里香植株中的咖啡酸含量分别增加 24.70% 和 10.08%。此外,接种 EB 会使植物中阿魏酸的含量增加(11.9%),而叶面喷洒 FeNPs 则会降低百里香植物中阿魏酸的含量。接种 EF 和 FeNPs(0.5 毫克/升-1)后,25% FC 的精油百分比最高,与对照相比,分别显著增加了 14.7% 和 82.12%。灌溉水平的降低导致百里香植物中精油的百分比增加,而主要精油化合物百里酚和香芹酚却减少了。百里酚和香芹酚在精油中的含量不受干旱胁迫、内生菌和 FeNPs 相互作用的影响。与对照相比,EF 和 FeNPs(1.5 mg L-1)分别导致百里酚含量显著增加 17.44% 和 29.87%,香芹酚含量显著增加 13.75% 和 31.01%。所有浓度的 FeNPs 都降低了阿魏酸、FeNPs(1.5 mg L-1)和 PPO 的浓度;这些颗粒在亚毒性水平下起着非生物胁迫作用,在较高浓度下会产生植物毒性。这些处理大大促进了酶抗氧化剂、类黄酮和酚类化合物的产生,从而减少了氧化剂的数量。同时,它们还提高了精油的质量和数量。这凸显了建立有效的抗氧化系统以应对环境压力的重要性。
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引用次数: 0
Pecan-medicinal crops intercropping improved soil fertility and promoted interactions between soil microorganisms and metabolites 山核桃-药用作物间作提高了土壤肥力,促进了土壤微生物和代谢物之间的相互作用
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-11-01 DOI: 10.1186/s40538-024-00693-8
Ruyuan Wang, Chenyang Liu, Xuesong Bie, Yan Dai, Xu Feng, Ren Wang, Ming Wang, Shu Xu, Yu Chen

Background

Pecan [Carya illinoinensis (Wangenh.) Koch] is a widely cultivated dried fruit and woody oil tree with high economic value. Continuous sole planting of pecan caused some land to lie idle and deterioration of soil conditions. Tree and medicinal crops intercropping represents an environmental-friendly and economically feasible solution to these issues. Thus, we aimed to explore the underlying mechanism by which intercropping improved soil condition by regulating the interactions of the soil microbiome and metabolome. In this study, pecans were intercropped with medicinal crops caper spurge and honeysuckle on a tree farm in China. A combined analysis of soil microbiomes and metabolomes was performed to discover the effects of intercropping on bulk and rhizosphere soils.

Results

The results showed that intercropping improved the edaphic properties of bulk soil and promoted the growth of pecan and caper spurge. Intercropping also significantly altered the structures of both bacterial and fungal communities in bulk soil, stabilised the enrichment of nitrogen-cyclic bacteria, for instance, Bacillus, and decreased the relative abundances of plant–pathogenic fungi, for instance, Fusarium. In addition, the result of metabolomic analysis showed that intercropping promoted the synthesis of functional compounds, such as trehalose and ethanolamine, which enhanced plant disease resistance in bulk soils. Moreover, the co-occurrence networks of microbiomes and metabolomes of bulk soils revealed that Bacillus was significantly correlated with Fusarium, Alternaria, and trehalose under intercropping patterns. Furthermore, analysis of microbiomes and metabolomes in the rhizosphere soil of caper spurge and honeysuckle revealed that Penicillium and Rhizomicrobium were significantly increased by intercropping and showed more dynamic connections with other genera and metabolites compared with single planting.

Conclusions

Overall, intercropping pecans with caper spurge and honeysuckle can improve soil conditions and promote plant growth through microbiological and metabolomics integrated analyses. This study provides valuable information and theoretical basis for optimizing land resource utilisation and improving soil conditions in tree fields like pecan fields via intercropping, thereby reducing production losses and ensuring economic benefits.

Graphical Abstract

背景山核桃(Carya illinoinensis (Wangenh.) Koch)是一种广泛栽培的干果和木本油料树种,具有很高的经济价值。连续单独种植山核桃造成部分土地闲置和土壤条件恶化。林木与药用作物间作是解决这些问题的一种环保且经济可行的方法。因此,我们旨在探索间作通过调节土壤微生物组和代谢组的相互作用来改善土壤条件的内在机制。在这项研究中,山核桃与药用作物毛刺和金银花在中国的一个林场间作。结果表明,间作可以改善土壤的水土性质,促进山核桃和毛刺草的生长。间作还显著改变了大块土壤中细菌和真菌群落的结构,稳定了氮环细菌(如芽孢杆菌)的富集,降低了植物病原真菌(如镰刀菌)的相对丰度。此外,代谢组分析结果表明,间作促进了功能化合物(如三卤糖和乙醇胺)的合成,从而增强了大块土壤中植物的抗病性。此外,大块土壤中微生物组和代谢组的共生网络显示,在间作模式下,芽孢杆菌与镰刀菌、交链孢菌和曲哈洛糖显著相关。此外,对毛刺芹和金银花根瘤土壤中微生物组和代谢组的分析表明,与单一种植相比,间作模式下青霉和根瘤菌显著增加,并与其他菌属和代谢物表现出更多的动态联系。结论总体而言,通过微生物和代谢组学的综合分析,山核桃与毛刺芹和金银花间作可以改善土壤条件,促进植物生长。这项研究为优化土地资源利用和通过间作改善山核桃等林木田的土壤条件提供了宝贵的信息和理论依据,从而减少了生产损失,确保了经济效益。 图文摘要
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引用次数: 0
An insight into conflict and collaboration between plants and microorganisms 洞察植物与微生物之间的冲突与合作
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-10-30 DOI: 10.1186/s40538-024-00684-9
Qaisar Khan, Xinghai Huang, Zhijie He, Hao Wang, Ying Chen, Gengshou Xia, Yixi Wang, Fayong Lang, Yan Zhang

Plants and microorganisms have been co-evolving and interacting for billions of years. Prior researchers have explored the plant’s immune system responses and interaction with diverse microbes, but several ambiguities need further explanation. This review provides insight into mechanisms underlying plant–microbe interaction and knowledge dearth domains, along with possibilities to use beneficial microbes to improve plant growth, disease resistance, nutritional value, and productivity. Microorganisms in the phyllosphere and the rhizosphere could be beneficial or pathogenic. Host plants use their innate immune system and the antagonistic competence of plant-growth-promoting microbes against pathogens. The innate immune system of plants has two paramount protection forms involving different types of immune receptors, which assist in recognizing non-self-components. The first group of receptors is membrane-resident pattern recognition receptors (PRRs), which are responsible for sensing microbe-associated molecular patterns (MAMPs) and damage-associated molecular patterns (DAMPs). The second group consists of intracellular immune sensors, specifically resistance (R) proteins, astute in recognizing the structure or function of strain-specific pathogen effectors injected into host plant cells. Plants activate their pattern-triggered immunity (PTI) and effector-triggered immunity (ETI) defense mechanisms to counter the infection. Plants benefit from certain microbes by promoting their growth, disease resistance, and resilience under various stress conditions in exchange for shelter and nutrients.

Graphical Abstract

数十亿年来,植物和微生物一直在共同进化和相互作用。之前的研究人员已经探索了植物的免疫系统反应以及与各种微生物的相互作用,但仍有一些模糊之处需要进一步解释。本综述深入探讨了植物与微生物相互作用的内在机制和知识匮乏领域,以及利用有益微生物改善植物生长、抗病性、营养价值和生产力的可能性。植物层和根瘤层中的微生物可能是有益的,也可能是致病的。寄主植物利用其先天免疫系统和促进植物生长的微生物的拮抗能力来对抗病原体。植物的先天免疫系统有两种最重要的保护形式,涉及不同类型的免疫受体,它们有助于识别非自身成分。第一类受体是驻膜模式识别受体(PRRs),负责感知微生物相关分子模式(MAMPs)和损伤相关分子模式(DAMPs)。第二类是细胞内免疫传感器,特别是抗性(R)蛋白,它们能敏锐地识别注入寄主植物细胞的特定病原体效应物的结构或功能。植物启动模式触发免疫(PTI)和效应触发免疫(ETI)防御机制来对抗感染。植物从某些微生物中获益,它们促进了植物的生长、抗病性以及在各种胁迫条件下的恢复能力,以换取庇护所和养分。
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引用次数: 0
Targeted metabolomics analysis of fatty acids in lamb meat for the authentication of paper mulberry silage as a substitute for alfalfa silage 对羔羊肉中的脂肪酸进行靶向代谢组学分析,以鉴定纸桑青贮饲料是否可替代苜蓿青贮饲料
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-10-29 DOI: 10.1186/s40538-024-00688-5
Xiong Yi, Zhou Hongzhang, Wang Ruhui, Li Xiaomei, Lin Yanli, Shi Yue, Ni Kuikui, Yang Fuyu

Background

The paper mulberry (Broussonetia papyrifera L.) is a valuable source of woody forage that can be used for ruminants, such as goat and lambs. However, there is limited knowledge about how paper mulberry silage affects carcass characteristics, meat physicochemical attributes, amino acid and unsaturated fatty acids in Hu lambs compared to alfalfa silage. The objective of this experiment was to investigate the impact of substituting alfalfa silage with paper mulberry silage on the slaughter performance, meat quality, free amino acid and fatty acid composition in muscles of Hu lambs.

Results

Thirty 60-day-old male Hu lambs with 17.13 ± 0.26 kg body weight were randomly allocated into paper mulberry silage (30% of total mixed ration) and alfalfa silage (30% of total mixed ration) treatment, and the feeding trial lasted 70 days. The results indicated no significant differences in all measurements (P > 0.05). However, compared to the group fed with alfalfa silage, the group fed with paper mulberry silage exhibited a reduction in meat drip loss (P < 0.05) without any notable effect on meat nutrients (P > 0.05). Targeted metabolomics analysis revealed that feeding paper mulberry silage led to decreased levels of certain bitter amino acids, such as valine, leucine, isoleucine, tryptophan, and phenylalanine (P < 0.05). Furthermore, the consumption of paper mulberry silage significantly augmented the levels of monounsaturated and polyunsaturated fatty acids, particularly n6-polyunsaturated fatty acids (C18:2n6, C20:3n6, C20:4n6, etc.), in meat.

Conclusions

Substituting paper mulberry silage for alfalfa in the daily diet of Hu lambs not only has no detrimental effect on animal performance but also improves meat unsaturated fatty acid composition.

Graphical Abstract

背景纸桑树(Broussonetia papyrifera L.)是一种宝贵的木本饲料来源,可用于饲喂山羊和羔羊等反刍动物。然而,与紫花苜蓿青贮饲料相比,人们对纸桑青贮饲料如何影响胡羔羊的胴体特征、肉的理化属性、氨基酸和不饱和脂肪酸的了解还很有限。本试验的目的是研究用纸桑青贮替代苜蓿青贮对胡羊羔屠宰性能、肉质、肌肉中游离氨基酸和脂肪酸组成的影响。结果将 30 只体重为 17.13 ± 0.26 kg 的 60 日龄雄性胡羊羔随机分配到纸桑青贮(占混合日粮总量的 30%)和苜蓿青贮(占混合日粮总量的 30%)处理中,饲养试验持续 70 天。结果表明,所有测定指标均无显著差异(P > 0.05)。然而,与饲喂苜蓿青贮饲料组相比,饲喂纸桑青贮饲料组的肉滴损失减少(P <0.05),但对肉的营养成分没有明显影响(P >0.05)。靶向代谢组学分析表明,饲喂纸桑椹青贮饲料会导致某些苦味氨基酸水平下降,如缬氨酸、亮氨酸、异亮氨酸、色氨酸和苯丙氨酸(P <0.05)。结论在胡羔羊的日粮中用纸质桑青贮代替苜蓿不仅不会对动物的生产性能产生不利影响,而且还能改善肉中不饱和脂肪酸的组成。
{"title":"Targeted metabolomics analysis of fatty acids in lamb meat for the authentication of paper mulberry silage as a substitute for alfalfa silage","authors":"Xiong Yi,&nbsp;Zhou Hongzhang,&nbsp;Wang Ruhui,&nbsp;Li Xiaomei,&nbsp;Lin Yanli,&nbsp;Shi Yue,&nbsp;Ni Kuikui,&nbsp;Yang Fuyu","doi":"10.1186/s40538-024-00688-5","DOIUrl":"10.1186/s40538-024-00688-5","url":null,"abstract":"<div><h3>Background</h3><p>The paper mulberry (<i>Broussonetia papyrifera</i> L.) is a valuable source of woody forage that can be used for ruminants, such as goat and lambs. However, there is limited knowledge about how paper mulberry silage affects carcass characteristics, meat physicochemical attributes, amino acid and unsaturated fatty acids in Hu lambs compared to alfalfa silage. The objective of this experiment was to investigate the impact of substituting alfalfa silage with paper mulberry silage on the slaughter performance, meat quality, free amino acid and fatty acid composition in muscles of Hu lambs.</p><h3>Results</h3><p>Thirty 60-day-old male Hu lambs with 17.13 ± 0.26 kg body weight were randomly allocated into paper mulberry silage (30% of total mixed ration) and alfalfa silage (30% of total mixed ration) treatment, and the feeding trial lasted 70 days. The results indicated no significant differences in all measurements (<i>P</i> &gt; 0.05). However, compared to the group fed with alfalfa silage, the group fed with paper mulberry silage exhibited a reduction in meat drip loss (<i>P</i> &lt; 0.05) without any notable effect on meat nutrients (<i>P</i> &gt; 0.05). Targeted metabolomics analysis revealed that feeding paper mulberry silage led to decreased levels of certain bitter amino acids, such as valine, leucine, isoleucine, tryptophan, and phenylalanine (<i>P</i> &lt; 0.05). Furthermore, the consumption of paper mulberry silage significantly augmented the levels of monounsaturated and polyunsaturated fatty acids, particularly n6-polyunsaturated fatty acids (C18:2n6, C20:3n6, C20:4n6, etc.), in meat.</p><h3>Conclusions</h3><p>Substituting paper mulberry silage for alfalfa in the daily diet of Hu lambs not only has no detrimental effect on animal performance but also improves meat unsaturated fatty acid composition.</p><h3>Graphical Abstract</h3>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":512,"journal":{"name":"Chemical and Biological Technologies in Agriculture","volume":"11 1","pages":""},"PeriodicalIF":5.2,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://chembioagro.springeropen.com/counter/pdf/10.1186/s40538-024-00688-5","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142524409","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Differential effects of pH on cadmium accumulation in Artemisia argyi growing in low and moderately cadmium-contaminated paddy soils pH 值对生长在低度和中度镉污染稻田土壤中的艾蒿镉积累的不同影响
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-10-28 DOI: 10.1186/s40538-024-00690-x
Ze Zhang, Jia-shun Zhong, Xin-zhi Guo, Chao Xu, Dao-you Huang, Jing Liu, Xin-sheng Chen

Background

Phytoremediation is affected by physical and chemical properties of the soil such as soil pH, moisture, and nutrient content. Soil pH is a key element influencing Cd bioavailability and can be easily adjusted in agricultural practices. The soil pH level may relate to the effectiveness of phytoremediation; however, this has not been extensively investigated. In the current study, we evaluated the effect of Cd contamination level (0.56 and 0.92 mg/kg) and soil pH (5, 6, and 7) on Cd accumulation and allocation in Artemisia argyi, a fast-growing perennial crop.

Results

Our results indicated that higher soil Cd concentrations reduce A. argyi biomass, and the loss of the root mass was particularly significant. Higher soil pH decreased Cd content in stems and roots of A. argyi cultivated in moderately Cd-polluted soil, and increased Cd content in stems and roots of the plant grown in low Cd-polluted soil. Higher soil pH decreased the percentage of Cd distributed in the soluble fraction and cell walls and increased the percentage of Cd in the organelles of leaf cells for moderate soil Cd levels. The bioconcentration and translocation factor exceeded 4.0 and 1.0, respectively, across all tested treatments, indicating that A. argyi is a promising candidate for phytoremediation. Notably, the effects of soil pH on Cd accumulation and subcellular distribution in A. argyi differed between low and moderately Cd-contaminated soils.

Conclusion

Adjustments to soil pH based on the degree of Cd contamination can enhance Cd extraction by A. argyi, thereby reducing the overall remediation cycle of cadmium-polluted paddy fields of South China.

Graphical Abstract

背景植物修复受土壤物理和化学特性的影响,如土壤 pH 值、水分和养分含量。土壤 pH 值是影响镉生物利用率的关键因素,在农业实践中很容易调整。土壤酸碱度可能与植物修复的效果有关,但这一问题尚未得到广泛研究。在本研究中,我们评估了镉污染水平(0.56 和 0.92 毫克/千克)和土壤 pH 值(5、6 和 7)对多年生速生作物阿尔基蒿的镉积累和分配的影响。土壤 pH 值越高,在中度镉污染土壤中栽培的旱金莲茎和根中的镉含量越低,而在低镉污染土壤中栽培的旱金莲茎和根中的镉含量则越高。在土壤镉含量中等的情况下,土壤 pH 值越高,分布在可溶性部分和细胞壁中的镉百分比越低,而分布在叶细胞器中的镉百分比则越高。在所有测试处理中,A. argyi 的生物浓缩系数和易位系数分别超过了 4.0 和 1.0,这表明 A. argyi 是一种很有前景的植物修复候选材料。结论根据镉污染程度调整土壤pH值可提高箭毒的镉萃取能力,从而缩短华南地区镉污染稻田的整体修复周期。 图文摘要
{"title":"Differential effects of pH on cadmium accumulation in Artemisia argyi growing in low and moderately cadmium-contaminated paddy soils","authors":"Ze Zhang,&nbsp;Jia-shun Zhong,&nbsp;Xin-zhi Guo,&nbsp;Chao Xu,&nbsp;Dao-you Huang,&nbsp;Jing Liu,&nbsp;Xin-sheng Chen","doi":"10.1186/s40538-024-00690-x","DOIUrl":"10.1186/s40538-024-00690-x","url":null,"abstract":"<div><h3>Background</h3><p>Phytoremediation is affected by physical and chemical properties of the soil such as soil pH, moisture, and nutrient content. Soil pH is a key element influencing Cd bioavailability and can be easily adjusted in agricultural practices. The soil pH level may relate to the effectiveness of phytoremediation; however, this has not been extensively investigated. In the current study, we evaluated the effect of Cd contamination level (0.56 and 0.92 mg/kg) and soil pH (5, 6, and 7) on Cd accumulation and allocation in <i>Artemisia argyi</i>, a fast-growing perennial crop.</p><h3>Results</h3><p>Our results indicated that higher soil Cd concentrations reduce <i>A. argyi</i> biomass, and the loss of the root mass was particularly significant. Higher soil pH decreased Cd content in stems and roots of <i>A. argyi</i> cultivated in moderately Cd-polluted soil, and increased Cd content in stems and roots of the plant grown in low Cd-polluted soil. Higher soil pH decreased the percentage of Cd distributed in the soluble fraction and cell walls and increased the percentage of Cd in the organelles of leaf cells for moderate soil Cd levels. The bioconcentration and translocation factor exceeded 4.0 and 1.0, respectively, across all tested treatments, indicating that <i>A. argyi</i> is a promising candidate for phytoremediation. Notably, the effects of soil pH on Cd accumulation and subcellular distribution in <i>A. argyi</i> differed between low and moderately Cd-contaminated soils.</p><h3>Conclusion</h3><p>Adjustments to soil pH based on the degree of Cd contamination can enhance Cd extraction by <i>A. argyi</i>, thereby reducing the overall remediation cycle of cadmium-polluted paddy fields of South China.</p><h3>Graphical Abstract</h3>\u0000<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":512,"journal":{"name":"Chemical and Biological Technologies in Agriculture","volume":"11 1","pages":""},"PeriodicalIF":5.2,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://chembioagro.springeropen.com/counter/pdf/10.1186/s40538-024-00690-x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142519162","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Arbuscular mycorrhizal fungi and intercropping Vicia villosa mediate plant biomass, soil properties, and rhizosphere metabolite profiles of walnuts 丛枝菌根真菌和间作薇甘菊对核桃的植物生物量、土壤特性和根圈代谢物特征具有中介作用
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-10-28 DOI: 10.1186/s40538-024-00685-8
Ying-Ning Zou, Xiao-Qing Liu, Wan-Xia He, Xiao-Hong Xu, Yong-Jie Xu, Abeer Hashem, Elsayed Fathi Abd-Allah, Qiang-Sheng Wu

Intercropping is a prevalent soil management strategy within orchards, whereas it is unclear how inoculation with arbuscular mycorrhizal (AM) fungi and intercropping affect tree growth, soil properties, and rhizosphere metabolite profiles. This study investigated the effects of inoculation with Diversispora spurca and intercropping with hairy vetch (Vicia villosa) on biomass production, soil available nutrients, water-stable aggregate (WSA) distribution, phosphatase activity, and secondary metabolite profiles in walnuts (Juglans regia). The intercropping only elevated soil nitrate N levels and WSA distribution at the 0.5–2 mm size, and also triggered 2159 differential metabolites (1378 up-regulated and 781 down-regulated), with armillaramide as the most prominently up-regulated metabolite, followed by the substance diminished upon D. spurca inoculation. Conversely, D. spurca inoculation increased walnut biomass, WSA distribution across the 0.25 − 2 mm size, and acid and neutral phosphatase activities, as well as triggered 2489 differential metabolites (897 up-regulated and 1592 down-regulated), with pteroside D being highest up-regulated differential metabolite, allowing a competitive advantage to AM plants in combating soil pathogens. Despite significantly suppressing root AM fungal colonization and biomass production in AM walnuts, intercropping significantly increased soil ammonium and nitrate N levels in AM walnuts as well as WSAs at the 1–4 mm size, exhibiting a synergistic effect. Flavone and flavonol biosynthesis and pyruvate metabolism were simultaneously involved following AM inoculation or intercropping. Co-application of AM inoculation and intercropping triggered 1006 differential metabolites, with urocanic acid being the most up-regulated metabolite, although it decreased following AM inoculation, suggesting the involvement of mycorrhizal hyphae in soil histidine uptake. Under intercropping, AM inoculation elicited 418 differential metabolites, with the most up-regulated metabolite being implicated in flavonoid pathways. AM inoculation primarily triggered the biosynthesis of unsaturated fatty acids, regardless of intercropping or not, implying a potential increase in unsaturated fatty acid contents of walnut kernels. It concluded that AM inoculation and intercropping interactively affected walnut growth, soil attributes, and soil microenvironment.

Graphical Abstract

间作是果园普遍采用的一种土壤管理策略,但接种丛枝菌根(AM)真菌和间作如何影响果树生长、土壤特性和根圈代谢物谱还不清楚。本研究调查了接种 Diversispora spurca 和间作套种毛茸茸的 vetch(Vicia villosa)对核桃(Juglans regia)的生物量生产、土壤可用养分、水稳聚集体(WSA)分布、磷酸酶活性和次生代谢物特征的影响。间作只提高了土壤硝态氮水平和 0.5-2 毫米大小的水稳聚集体分布,还引发了 2159 种不同的代谢物(1378 种上调,781 种下调),其中臂酰胺是上调最显著的代谢物,其次是接种刺五加后减少的物质。相反,接种刺五加后,核桃生物量、0.25 - 2 毫米大小的 WSA 分布、酸性和中性磷酸酶活性均有所增加,并引发了 2489 个差异代谢物(897 个上调,1592 个下调),其中蝶苷 D 是上调幅度最大的差异代谢物,从而使 AM 植物在对抗土壤病原体方面具有竞争优势。尽管间作显著抑制了 AM 核桃根部 AM 真菌的定殖和生物量的产生,但间作显著提高了 AM 核桃以及 1-4 毫米大小 WSA 的土壤铵和硝酸态氮水平,表现出协同效应。AM接种或间作后,黄酮和黄酮醇的生物合成和丙酮酸代谢同时参与其中。AM接种和间作的共同应用引发了1006种不同的代谢物,其中尿烷酸是上调最多的代谢物,但在AM接种后尿烷酸减少,这表明菌根菌丝参与了土壤组氨酸的吸收。在间作条件下,AM 接种引起了 418 种不同的代谢物,其中上调最多的代谢物与类黄酮途径有关。无论是否间作,AM 接种主要引发不饱和脂肪酸的生物合成,这意味着核桃仁中不饱和脂肪酸的含量可能增加。结论是,AM 接种和间作对核桃的生长、土壤属性和土壤微环境有交互影响。 图文摘要
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引用次数: 0
A study on hyperspectral soil total nitrogen inversion using a hybrid deep learning model CBiResNet-BiLSTM 利用 CBiResNet-BiLSTM 混合深度学习模型对高光谱土壤全氮反演的研究
IF 5.2 2区 农林科学 Q1 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-10-18 DOI: 10.1186/s40538-024-00681-y
Miao Sun, Yuzhu Yang, Shulong Li, Dongjie Yin, Geao Zhong, Liying Cao

Rapid, accurate and non-destructive acquisition of soil total nitrogen (TN) content in the black soil zone is significant for achieving precise fertilization. In this study, the soil types of corn and soybean fields in Jilin Agricultural University, China, were selected as the study area. A total of 162 soil samples were collected using a five-point mixed sampling method. Then, spectral data were obtained and the noisy edge were initially eliminated. Subsequently, the denoised spectral data underwent smoothing by using the Savitzky–Golay (SG) method. After performing the first-order difference (FD) and second-order difference (SD) transformations on the data, it was input to the model. In this study, a hybrid deep learning model, CBiResNet-BiLSTM, was designed for precise prediction of soil TN content. This model was optimized based on ResNet34, and its capabilities were enhanced by incorporating CBAM in the residual module to facilitate additional eigenvalue extraction. Also, Bidirectional Long Short-Term Memory (BiLSTM) was integrated to enhance model accuracy. Besides, partial least squares regression (PLSR), random forest regression (RFR), support vector machine regression (SVR), and back propagation neural network (BP), as well as ResNet(18, 34, 50, 101, 152) models were taken for comparative experiments. The results indicated that the traditional machine learning model PLSR achieved good performance, with R2 of 0.883, and the hybrid deep learning model CBiResNet-BiLSTM had the best inversion capability with R2 of 0.937, with the R2 being improved by 5.4%, compared with the PLSR model. On this basis, we present the LUCAS dataset to demonstrate the generalisability of the model. Therefore, the CBiResNet-BiLSTM model is a fast and feasible hyperspectral estimation method for soil TN content.

Graphical abstract

快速、准确、无损地获取黑土区土壤全氮(TN)含量对实现精准施肥具有重要意义。本研究选取吉林农业大学玉米田和大豆田的土壤类型作为研究区域。采用五点混合取样法,共采集了 162 个土壤样本。然后获取光谱数据,并初步去除噪声边缘。随后,使用 Savitzky-Golay (SG) 方法对去噪光谱数据进行平滑处理。对数据进行一阶差分(FD)和二阶差分(SD)变换后,将其输入模型。本研究设计了一个混合深度学习模型 CBiResNet-BiLSTM,用于精确预测土壤 TN 含量。该模型在 ResNet34 的基础上进行了优化,并通过在残差模块中加入 CBAM 来促进额外的特征值提取,从而增强了其功能。此外,还集成了双向长短期记忆(BiLSTM),以提高模型的准确性。此外,还采用了偏最小二乘回归(PLSR)、随机森林回归(RFR)、支持向量机回归(SVR)、反向传播神经网络(BP)以及 ResNet(18、34、50、101、152)模型进行对比实验。结果表明,传统机器学习模型 PLSR 性能良好,R2 为 0.883;混合深度学习模型 CBiResNet-BiLSTM 的反演能力最佳,R2 为 0.937,与 PLSR 模型相比,R2 提高了 5.4%。在此基础上,我们提出了 LUCAS 数据集,以证明该模型的通用性。因此,CBiResNet-BiLSTM 模型是一种快速可行的土壤 TN 含量高光谱估算方法。
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引用次数: 0
期刊
Chemical and Biological Technologies in Agriculture
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