首页 > 最新文献

3 Biotech最新文献

英文 中文
Bio-inspired designs: leveraging biological brilliance in mechanical engineering-an overview. 生物启发设计:在机械工程中利用生物的聪明才智--综述。
IF 2.6 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-11-25 DOI: 10.1007/s13205-024-04153-w
Gururaj Fattepur, Arun Y Patil, Piyush Kumar, Anil Kumar, Chandrashekhar Hegde, I G Siddhalingeshwar, Raman Kumar, T M Yunus Khan

Nature's evolutionary mastery has perfected design over the years, yielding organisms superbly adapted to their surroundings. This research delves into the promising domain of bio-inspired designs, poised to revolutionize mechanical engineering. Leveraging insights drawn from prior conversations, we categorize innovations influenced by life on land, in water, and through the air, emphasizing their pivotal contributions to mechanical properties. Our comprehensive review reveals a wealth of bio-inspired designs that have already made substantial inroads in mechanical engineering. From avian-inspired lightweight yet robust materials to hydrodynamically optimized forms borrowed from marine creatures, these innovations hold immense potential for enhancing mechanical systems. In conclusion, this study underscores the transformative potential of bio-inspired designs, offering improved mechanical characteristics and the promise of sustainability and efficiency across a broad spectrum of applications. This research envisions a future where bio-inspired designs shape the mechanical landscape, fostering a more harmonious coexistence between human technology and the natural world.

多年来,大自然的进化造就了完美的设计,产生了适应周围环境的卓越生物。这项研究深入探讨了生物启发设计这一前景广阔的领域,它将为机械工程带来一场革命。利用从先前对话中汲取的见解,我们对受陆地、水中和空中生命影响的创新进行了分类,强调了它们对机械性能的关键贡献。我们的全面回顾揭示了大量生物启发设计,这些设计已经在机械工程领域取得了实质性进展。从鸟类启发的轻质坚固材料到借鉴海洋生物的流体力学优化形式,这些创新在增强机械系统方面蕴含着巨大的潜力。总之,这项研究强调了生物启发设计的变革潜力,它能提供更好的机械特性,并有望在广泛的应用领域实现可持续性和高效性。这项研究展望了生物启发设计塑造机械景观,促进人类技术与自然世界更加和谐共存的未来。
{"title":"Bio-inspired designs: leveraging biological brilliance in mechanical engineering-an overview.","authors":"Gururaj Fattepur, Arun Y Patil, Piyush Kumar, Anil Kumar, Chandrashekhar Hegde, I G Siddhalingeshwar, Raman Kumar, T M Yunus Khan","doi":"10.1007/s13205-024-04153-w","DOIUrl":"10.1007/s13205-024-04153-w","url":null,"abstract":"<p><p>Nature's evolutionary mastery has perfected design over the years, yielding organisms superbly adapted to their surroundings. This research delves into the promising domain of bio-inspired designs, poised to revolutionize mechanical engineering. Leveraging insights drawn from prior conversations, we categorize innovations influenced by life on land, in water, and through the air, emphasizing their pivotal contributions to mechanical properties. Our comprehensive review reveals a wealth of bio-inspired designs that have already made substantial inroads in mechanical engineering. From avian-inspired lightweight yet robust materials to hydrodynamically optimized forms borrowed from marine creatures, these innovations hold immense potential for enhancing mechanical systems. In conclusion, this study underscores the transformative potential of bio-inspired designs, offering improved mechanical characteristics and the promise of sustainability and efficiency across a broad spectrum of applications. This research envisions a future where bio-inspired designs shape the mechanical landscape, fostering a more harmonious coexistence between human technology and the natural world.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"14 12","pages":"312"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11589069/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142738001","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dissecting the genetic diversity of cultivated tomato (Solanum lycopersicum) germplasm resources: a comparison of ddRADseq genotyping and microsatellite analysis via capillary electrophoresis and high-resolution melting. 剖析栽培番茄(Solanum lycopersicum)种质资源的遗传多样性:通过毛细管电泳和高分辨率熔融对 ddRADseq 基因分型和微卫星分析进行比较。
IF 2.6 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-11-09 DOI: 10.1007/s13205-024-04141-0
Pasquale Tripodi, Rosa D'Alessandro, Annalisa Cocozza, Gabriele Campanelli

Understanding the genetic diversity of crops is of fundamental importance for the efficient use and improvement of germplasm resources. Different molecular genotyping systems have been implemented for population structure and phylogenetic relationships analyses, among which, microsatellites (SSRs) and single nucleotide polymorphisms (SNPs) markers have been the most widely used. This study reports the efficacy of SNPs detected via double-digest restriction-site-associated DNA sequencing (ddRADseq) and SSRs analyzed via capillary electrophoresis (CE) and high-resolution melting (HRM) in tomato. In total, 21,020 high-quality SNPs, 20 CE-SSRs, and 17 HRM-SSR markers were assayed in a panel of 72 accessions that included a diversified set of landraces, long-shelf-life cultivars and heirlooms with different origins and fruit typology. The results showed how the population structure analysis was consistent using the three genotyping methods, although SNPs were more efficient in distinguishing cultivar types and in measuring the degree of accessions' similarity. Compared to CE-SSR, the analysis of microsatellites via HRM yielded a slightly higher number of alleles (98 vs. 96). HRM-SSR demonstrated a distinction between European and non-European germplasm, better resolving the collection's diversity and being more consistent with SNP data. Phylogenetic trees drawn with independent marker data, detected specific groups of accessions showing robust clusters, highlighting how heirlooms were less heterogeneous than landraces. In addition, the fixation index (F ST ) revealed a high genetic differentiation between heirlooms and long-shelf-life cultivars, with SNP and SSR-HRM data emphasizing the distinction between cherry and plum types and CE-SSR data between cherry and oxheart types. In all instances, a greater molecular variance was found within the different considered biological statuses, provenances, and typologies rather than among them. This work presents the first attempt to compare the three tomato genotyping techniques in tomato. Findings highlighted how the markers used are complementary for genetic diversity analysis, with SNPs providing better insight and HRM-SSR as a viable alternative to capillary electrophoresis to dissect the genetic structure.

Supplementary information: The online version contains supplementary material available at 10.1007/s13205-024-04141-0.

了解作物的遗传多样性对于有效利用和改良种质资源至关重要。目前已有不同的分子基因分型系统用于种群结构和系统发育关系分析,其中微卫星(SSR)和单核苷酸多态性(SNPs)标记应用最为广泛。本研究报告了番茄中通过双酶切限制性位点相关 DNA 测序(ddRADseq)检测的 SNPs 以及通过毛细管电泳(CE)和高分辨率熔融(HRM)分析的 SSRs 的功效。在一个由 72 个品种组成的小组中,共检测了 21,020 个高质量 SNPs、20 个 CE-SSR 和 17 个 HRM-SSR 标记,这些品种包括不同来源和果实类型的多样化陆生品种、长货架期栽培品种和传家品种。结果表明,尽管 SNP 在区分栽培品种类型和衡量加入品系的相似程度方面更有效,但使用这三种基因分型方法进行的种群结构分析是一致的。与 CE-SSR 相比,通过 HRM 分析微卫星得到的等位基因数量略高(98 对 96)。HRM-SSR 显示了欧洲种质与非欧洲种质之间的区别,更好地解析了收集的多样性,并与 SNP 数据更加一致。利用独立标记数据绘制的系统发育树检测到了特定的入选种群,显示出强大的聚类,突出了传家宝的异质性低于陆生品系。此外,固定指数(F ST)显示了传家宝和长货架期栽培品种之间的高度遗传分化,SNP 和 SSR-HRM 数据强调了樱桃和李子类型之间的区别,而 CE-SSR 数据则强调了樱桃和牛心类型之间的区别。在所有情况下,不同生物状态、产地和类型之间的分子差异更大。这项研究首次尝试对三种番茄基因分型技术进行比较。研究结果凸显了所使用的标记在遗传多样性分析中的互补性,SNPs 提供了更好的洞察力,HRM-SSR 是毛细管电泳剖析遗传结构的可行替代方法:在线版本包含补充材料,可查阅 10.1007/s13205-024-04141-0。
{"title":"Dissecting the genetic diversity of cultivated tomato (<i>Solanum lycopersicum</i>) germplasm resources: a comparison of ddRADseq genotyping and microsatellite analysis via capillary electrophoresis and high-resolution melting.","authors":"Pasquale Tripodi, Rosa D'Alessandro, Annalisa Cocozza, Gabriele Campanelli","doi":"10.1007/s13205-024-04141-0","DOIUrl":"https://doi.org/10.1007/s13205-024-04141-0","url":null,"abstract":"<p><p>Understanding the genetic diversity of crops is of fundamental importance for the efficient use and improvement of germplasm resources. Different molecular genotyping systems have been implemented for population structure and phylogenetic relationships analyses, among which, microsatellites (SSRs) and single nucleotide polymorphisms (SNPs) markers have been the most widely used. This study reports the efficacy of SNPs detected via double-digest restriction-site-associated DNA sequencing (ddRADseq) and SSRs analyzed via capillary electrophoresis (CE) and high-resolution melting (HRM) in tomato. In total, 21,020 high-quality SNPs, 20 CE-SSRs, and 17 HRM-SSR markers were assayed in a panel of 72 accessions that included a diversified set of landraces, long-shelf-life cultivars and heirlooms with different origins and fruit typology. The results showed how the population structure analysis was consistent using the three genotyping methods, although SNPs were more efficient in distinguishing cultivar types and in measuring the degree of accessions' similarity. Compared to CE-SSR, the analysis of microsatellites via HRM yielded a slightly higher number of alleles (98 vs<i>.</i> 96). HRM-SSR demonstrated a distinction between European and non-European germplasm, better resolving the collection's diversity and being more consistent with SNP data. Phylogenetic trees drawn with independent marker data, detected specific groups of accessions showing robust clusters, highlighting how heirlooms were less heterogeneous than landraces. In addition, the fixation index (<i>F</i> <sub><i>ST</i></sub> ) revealed a high genetic differentiation between heirlooms and long-shelf-life cultivars, with SNP and SSR-HRM data emphasizing the distinction between cherry and plum types and CE-SSR data between cherry and oxheart types. In all instances, a greater molecular variance was found within the different considered biological statuses, provenances, and typologies rather than among them. This work presents the first attempt to compare the three tomato genotyping techniques in tomato. Findings highlighted how the markers used are complementary for genetic diversity analysis, with SNPs providing better insight and HRM-SSR as a viable alternative to capillary electrophoresis to dissect the genetic structure.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s13205-024-04141-0.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"14 12","pages":"296"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11550310/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142611911","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Micropropagation and in vitro rejuvenation of Eucalyptus cloeziana F. Muell. 桉树的微繁殖和离体再生
IF 2.6 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-11-06 DOI: 10.1007/s13205-024-04131-2
Leandro Silva de Oliveira, Douglas Machado Leite, Fabíola Magalhães Mendes, Letícia Vaz Molinari, Gilvano Ebling Brondani, Antônio Natal Gonçalves, Marcilio de Almeida

Micropropagation is an important tool for the propagation for recalcitrant species, like Eucalyptus cloeziana. This is a first reported about a complete study of the E. cloeziana, it includes the vegetative rescue protocol of mature trees, its micropropagation up to the implementation of a mini-garden and clonal micro-garden and evaluation of adventitious rooting of their propagules. The in vitro rejuvenation of E. cloeziana genotypes (03, 05, 06, 13 and 15), over 21 successive subcultures, was evaluated by comparing minicutting and microcutting techniques and the efficiency of this biotechnological tool for cloning of the mature trees. The results provide evidence of the in vitro rejuvenation occurring in the mature E. cloeziana trees during micropropagation, leading to increases in the multiplication ratios of the microstumps of three genotypes (03, 05 and 15). The survival and callogenesis percentages of the mini and microcuttings of E. cloeziana were higher than 80% upon exiting of the greenhouse (30-days old) in the three cutting times. The results suggesting that factors beyond tissue maturity influence the adventitious rooting of the E. cloeziana because minicuttings and microcuttings of the 05 and 13 elite genotypes exhibited rooting percentages lower than 20%. These findings provided a theoretical basis for realizing the micropropagation of the epicormic shoots of the mature trees and, subsequently, its in vitro rejuvenation by axillary bud proliferation.

微繁殖是繁殖桉树等顽固树种的重要工具。本文首次报道了对无花果桉树的完整研究,包括成熟树木的无性繁殖拯救方案、微繁殖直至小型花园和克隆微花园的实施,以及对其繁殖体不定根的评估。通过比较微型栽培和微切技术,评估了 E. cloeziana 基因型(03、05、06、13 和 15)在连续 21 次亚培养过程中的离体再生情况,以及这种生物技术手段在克隆成熟树木方面的效率。结果证明,在微繁殖过程中,成熟的 E. cloeziana 树体发生了离体再生,导致三个基因型(03、05 和 15)的微桩繁殖率增加。在三个扦插时间中,小插穗和微插穗在离开温室(30 天)时的存活率和胼胝发生率均高于 80%。由于 05 和 13 个精英基因型的迷你插条和微插条的生根率均低于 20%,这些结果表明组织成熟度以外的因素会影响 E. cloeziana 的不定根。这些发现为实现成熟树木外植体芽的微繁殖,以及随后通过腋芽增殖使其在体外返老还童提供了理论依据。
{"title":"Micropropagation and in vitro rejuvenation of <i>Eucalyptus cloeziana</i> F. Muell.","authors":"Leandro Silva de Oliveira, Douglas Machado Leite, Fabíola Magalhães Mendes, Letícia Vaz Molinari, Gilvano Ebling Brondani, Antônio Natal Gonçalves, Marcilio de Almeida","doi":"10.1007/s13205-024-04131-2","DOIUrl":"https://doi.org/10.1007/s13205-024-04131-2","url":null,"abstract":"<p><p>Micropropagation is an important tool for the propagation for recalcitrant species, like <i>Eucalyptus cloeziana.</i> This is a first reported about a complete study of the <i>E. cloeziana</i>, it includes the vegetative rescue protocol of mature trees, its micropropagation up to the implementation of a mini-garden and clonal micro-garden and evaluation of adventitious rooting of their propagules. The in vitro rejuvenation of <i>E. cloeziana</i> genotypes (03, 05, 06, 13 and 15), over 21 successive subcultures, was evaluated by comparing minicutting and microcutting techniques and the efficiency of this biotechnological tool for cloning of the mature trees. The results provide evidence of the in vitro rejuvenation occurring in the mature <i>E. cloeziana</i> trees during micropropagation, leading to increases in the multiplication ratios of the microstumps of three genotypes (03, 05 and 15). The survival and callogenesis percentages of the mini and microcuttings of <i>E. cloeziana</i> were higher than 80% upon exiting of the greenhouse (30-days old) in the three cutting times. The results suggesting that factors beyond tissue maturity influence the adventitious rooting of the <i>E. cloeziana</i> because minicuttings and microcuttings of the 05 and 13 elite genotypes exhibited rooting percentages lower than 20%. These findings provided a theoretical basis for realizing the micropropagation of the epicormic shoots of the mature trees and, subsequently, its in vitro rejuvenation by axillary bud proliferation.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"14 12","pages":"292"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11541971/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142611915","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nanomaterial-enabled drug transport systems: a comprehensive exploration of current developments and future avenues in therapeutic delivery. 纳米材料药物传输系统:全面探索治疗传输的当前发展和未来途径。
IF 2.6 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-11-04 DOI: 10.1007/s13205-024-04135-y
Shatabdi Basu, Pragnya Biswas, Mariya Anto, Nandini Singh, Koel Mukherjee

Over the years, nanotechnology has gained popularity as a viable solution to address gene and drug delivery challenges over conventional methods. Extensive research has been conducted on nanosystems that consist of organic/inorganic materials, drugs, and its biocompatibility become the primary goal of improving drug delivery. Various surface modification methods help focus targeted and controlled drug release, further enabling multidrug delivery also. This newer technology ensures the stability of drugs that can unravel the mechanisms involved in cellular processes of disease development and its management. Tailored medication delivery provides benefits such as therapy, controlled release, and reduced adverse effects, which are especially important for controlling illnesses like cancer. However, multifunctional nanocarriers that possess high viscoelasticity, extended circulation half-life, biocompatibility, and biodegradability face some challenges and limitations too in human bodies. To produce a consistent therapeutic platform based on complex three-dimensional nanoparticles, careful design and engineering, thorough orthogonal analysis methods, and reproducible scale-up and manufacturing processes will be required in the future. Safety and effectiveness of nano-based drug delivery should be thoroughly investigated in preclinical and clinical trials, especially when considering biodistribution, targeting specific areas, and potential immunological toxicities. Overall, the current review article explores the advancements in nanotechnology, specific to nanomaterial-enabled drug delivery systems, carrier fabrication techniques and modifications, disease management, clinical research, applications, limitations, and future challenges. The work portrays how nanomedicine distribution affects healthcare with an emphasis on the developments in drug delivery techniques.

多年来,与传统方法相比,纳米技术作为解决基因和药物递送难题的一种可行方案,已逐渐受到人们的青睐。人们对由有机/无机材料、药物及其生物相容性组成的纳米系统进行了广泛的研究,并将其作为改善药物输送的首要目标。各种表面改性方法有助于有针对性地控制药物释放,进一步实现多药给药。这种更新的技术可确保药物的稳定性,从而揭示疾病发生和治疗的细胞过程所涉及的机制。量身定制的给药方式具有治疗、控制释放和减少不良反应等优点,这对于控制癌症等疾病尤为重要。然而,具有高粘弹性、延长循环半衰期、生物相容性和生物降解性的多功能纳米载体在人体中也面临着一些挑战和限制。要生产出基于复杂三维纳米颗粒的稳定治疗平台,未来需要精心设计和工程设计、全面的正交分析方法以及可重复的放大和制造工艺。应在临床前和临床试验中对纳米给药的安全性和有效性进行彻底研究,尤其是在考虑生物分布、靶向特定区域和潜在免疫毒性时。总之,本综述文章探讨了纳米技术的发展,特别是纳米材料给药系统、载体制造技术和改性、疾病管理、临床研究、应用、局限性和未来挑战。文章以给药技术的发展为重点,描绘了纳米医学的分布如何影响医疗保健。
{"title":"Nanomaterial-enabled drug transport systems: a comprehensive exploration of current developments and future avenues in therapeutic delivery.","authors":"Shatabdi Basu, Pragnya Biswas, Mariya Anto, Nandini Singh, Koel Mukherjee","doi":"10.1007/s13205-024-04135-y","DOIUrl":"10.1007/s13205-024-04135-y","url":null,"abstract":"<p><p>Over the years, nanotechnology has gained popularity as a viable solution to address gene and drug delivery challenges over conventional methods. Extensive research has been conducted on nanosystems that consist of organic/inorganic materials, drugs, and its biocompatibility become the primary goal of improving drug delivery. Various surface modification methods help focus targeted and controlled drug release, further enabling multidrug delivery also. This newer technology ensures the stability of drugs that can unravel the mechanisms involved in cellular processes of disease development and its management. Tailored medication delivery provides benefits such as therapy, controlled release, and reduced adverse effects, which are especially important for controlling illnesses like cancer. However, multifunctional nanocarriers that possess high viscoelasticity, extended circulation half-life, biocompatibility, and biodegradability face some challenges and limitations too in human bodies. To produce a consistent therapeutic platform based on complex three-dimensional nanoparticles, careful design and engineering, thorough orthogonal analysis methods, and reproducible scale-up and manufacturing processes will be required in the future. Safety and effectiveness of nano-based drug delivery should be thoroughly investigated in preclinical and clinical trials, especially when considering biodistribution, targeting specific areas, and potential immunological toxicities. Overall, the current review article explores the advancements in nanotechnology, specific to nanomaterial-enabled drug delivery systems, carrier fabrication techniques and modifications, disease management, clinical research, applications, limitations, and future challenges. The work portrays how nanomedicine distribution affects healthcare with an emphasis on the developments in drug delivery techniques.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"14 12","pages":"289"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11534931/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142589507","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Plant resources for immunonutrients and immunomodulators to combat infectious respiratory viral diseases: a review. 抗击传染性呼吸道病毒疾病的免疫营养素和免疫调节剂植物资源:综述。
IF 2.6 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-11-16 DOI: 10.1007/s13205-024-04143-y
Sobha Kota, Anand Kumar Nelapati, Vayunandana Rao Govada

Boosting the immune system has become a crucial aspect in the global battle against the COVID-19 pandemic and other similar infections to protect oneself against symptoms, especially in the prevention of viral infections of the lower respiratory tract. The importance of conducting more studies to create successful herbal formulations as infection prevention measures is emphasized in this review, which looks at the function of immune-boosting nutrients, medicinal plants, and herbal treatments. We reviewed and analyzed 207 studies published from 1946 to the present using reputable databases like Google Scholar, PubMed, and NCBI. The review examined 115 plant species in total and identified 12 key nutrients, including vitamins A, D, C, omega-3 fatty acids, iron, and zinc, while noting that four plant families, Rosaceae, Asteraceae, Amaryllidaceae, and Acanthaceae, show potential against respiratory infections like influenza, RSV, and SARS-CoV. To lower the risk of infection, it is recommended to consume nutritious meals that have immune-modulating qualities. Information on the bioactive components of medicinal herbs, spices, and plants that have been effective in treating respiratory viral infections and related conditions is compiled in this review, which highlights phytoactive substances with antibacterial and antiviral activity as effective modulators to lower the risk of infections. Furthermore, it is highlighted that ancient knowledge systems, like Ayurveda and Naturopathy, should be integrated to help develop new herbal formulations. To improve immunity and lessen vulnerability to serious respiratory infections, the results highlight the need for including immune-modulating foods and plant-based medicines into everyday routines.

在全球抗击 COVID-19 大流行病和其他类似感染的斗争中,增强免疫系统已成为保护自身免受症状困扰的一个重要方面,尤其是在预防下呼吸道病毒感染方面。本综述探讨了提高免疫力的营养素、药用植物和草药疗法的功能,强调了开展更多研究以成功研制草药配方作为预防感染措施的重要性。我们使用 Google Scholar、PubMed 和 NCBI 等著名数据库,对 1946 年至今发表的 207 项研究进行了回顾和分析。综述共研究了 115 种植物,并确定了 12 种关键营养素,包括维生素 A、D、C、欧米茄-3 脂肪酸、铁和锌,同时指出蔷薇科、菊科、金莲花科和刺桐科这四个植物科对流感、RSV 和 SARS-CoV 等呼吸道感染具有潜在的抵抗力。为降低感染风险,建议食用具有免疫调节功能的营养膳食。本综述汇编了在治疗呼吸道病毒感染和相关疾病方面有效的药草、香料和植物的生物活性成分信息,重点介绍了具有抗菌和抗病毒活性的植物活性物质,它们是降低感染风险的有效调节剂。此外,综述还强调,应结合阿育吠陀和自然疗法等古老知识体系,帮助开发新的草药配方。为了提高免疫力,降低易患严重呼吸道感染的风险,研究结果强调有必要将免疫调节食品和植物性药物纳入日常生活中。
{"title":"Plant resources for immunonutrients and immunomodulators to combat infectious respiratory viral diseases: a review.","authors":"Sobha Kota, Anand Kumar Nelapati, Vayunandana Rao Govada","doi":"10.1007/s13205-024-04143-y","DOIUrl":"10.1007/s13205-024-04143-y","url":null,"abstract":"<p><p>Boosting the immune system has become a crucial aspect in the global battle against the COVID-19 pandemic and other similar infections to protect oneself against symptoms, especially in the prevention of viral infections of the lower respiratory tract. The importance of conducting more studies to create successful herbal formulations as infection prevention measures is emphasized in this review, which looks at the function of immune-boosting nutrients, medicinal plants, and herbal treatments. We reviewed and analyzed 207 studies published from 1946 to the present using reputable databases like Google Scholar, PubMed, and NCBI. The review examined 115 plant species in total and identified 12 key nutrients, including vitamins A, D, C, omega-3 fatty acids, iron, and zinc, while noting that four plant families, Rosaceae, Asteraceae, Amaryllidaceae, and Acanthaceae, show potential against respiratory infections like influenza, RSV, and SARS-CoV. To lower the risk of infection, it is recommended to consume nutritious meals that have immune-modulating qualities. Information on the bioactive components of medicinal herbs, spices, and plants that have been effective in treating respiratory viral infections and related conditions is compiled in this review, which highlights phytoactive substances with antibacterial and antiviral activity as effective modulators to lower the risk of infections. Furthermore, it is highlighted that ancient knowledge systems, like Ayurveda and Naturopathy, should be integrated to help develop new herbal formulations. To improve immunity and lessen vulnerability to serious respiratory infections, the results highlight the need for including immune-modulating foods and plant-based medicines into everyday routines.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"14 12","pages":"302"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11568085/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142646761","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metagenomics approaches in the discovery and development of new bioactive compound of 8-demethoxy-10-deoxysteffimycin from mangrove sediments. 利用元基因组学方法从红树林沉积物中发现和开发新的生物活性化合物 8-去甲氧基-10-脱氧半胱氨酸。
IF 2.6 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-11-17 DOI: 10.1007/s13205-024-04137-w
P Sujith, J Rajesh Singh, S Jayalakshmi, Karthikeyan Kandaswamy, Mohammed Rafi Shaik, Shaik Althaf Hussain, Zulhisyam Abdul Kari, Ajay Guru

A metagenomic library consisting of 15,000 clones was constructed from the mangrove sediment. An antimicrobially active clone from the metagenomic library PS49 was identified by function- based screening. This paper presents the results of the biochemical characterization and metagenomic library screening of the marine-derived antibiotic, 8-demethoxy-10-deoxysteffimycin. Plasmid libraries were constructed, and clones were produced using a metagenomic approach. Out of 15,000 clones, 81 clones were screened for antimicrobial activity, and five potential clones were selected. The activity of one clone was characterized and named as PS49. The bioactive compounds from the selected clone were checked for antimicrobial, antioxidant, and anticancer activities. The clone PS49 was tested against various pathogens including bacteria and fungi and it showed inhibitory effects against all the tested pathogens. The antimicrobially active fractions were then crystallized and subjected to spectroscopic analysis such as FTIR, NMR and LC-MS analysis. The substance from clone PS49 has finally been recognized, and the compound from clone PS49 has been identified as 8-demethoxy-10-deoxysteffimycin. The substances isolated from the PS49 clone exhibited strong anticancer activity against skin cancer-cell lines SK-MEL2. The compounds showed a reduction in cell viability with an increase in the compound concentration. The compounds obtained from clone PS49 showed an IC50 value of 85 µg/ml.

从红树林沉积物中构建了一个由 15,000 个克隆组成的元基因组文库。通过基于功能的筛选,从元基因组文库 PS49 中鉴定出了一个具有抗菌活性的克隆。本文介绍了海洋衍生抗生素 8-去甲氧基-10-脱氧半胱氨酸的生化特征和元基因组文库筛选结果。本文构建了质粒文库,并使用元基因组方法产生了克隆。在 15,000 个克隆中,对 81 个克隆进行了抗菌活性筛选,选出了 5 个潜在克隆。对其中一个克隆的活性进行了鉴定,并将其命名为 PS49。对所选克隆中的生物活性化合物进行了抗菌、抗氧化和抗癌活性检测。对克隆 PS49 进行了针对各种病原体(包括细菌和真菌)的测试,结果表明它对所有受测病原体都有抑制作用。随后,抗菌活性馏分被结晶化,并进行了傅立叶变换红外光谱、核磁共振和液相色谱-质谱分析等光谱分析。最终确认了克隆 PS49 中的物质,并确定克隆 PS49 中的化合物为 8-去甲氧基-10-脱氧半胱氨酸。从 PS49 克隆中分离出的物质对皮肤癌细胞株 SK-MEL2 具有很强的抗癌活性。这些化合物显示,随着化合物浓度的增加,细胞存活率降低。从克隆 PS49 中获得的化合物的 IC50 值为 85 µg/ml。
{"title":"Metagenomics approaches in the discovery and development of new bioactive compound of 8-demethoxy-10-deoxysteffimycin from mangrove sediments.","authors":"P Sujith, J Rajesh Singh, S Jayalakshmi, Karthikeyan Kandaswamy, Mohammed Rafi Shaik, Shaik Althaf Hussain, Zulhisyam Abdul Kari, Ajay Guru","doi":"10.1007/s13205-024-04137-w","DOIUrl":"10.1007/s13205-024-04137-w","url":null,"abstract":"<p><p>A metagenomic library consisting of 15,000 clones was constructed from the mangrove sediment. An antimicrobially active clone from the metagenomic library PS49 was identified by function- based screening. This paper presents the results of the biochemical characterization and metagenomic library screening of the marine-derived antibiotic, 8-demethoxy-10-deoxysteffimycin. Plasmid libraries were constructed, and clones were produced using a metagenomic approach. Out of 15,000 clones, 81 clones were screened for antimicrobial activity, and five potential clones were selected. The activity of one clone was characterized and named as PS49. The bioactive compounds from the selected clone were checked for antimicrobial, antioxidant, and anticancer activities. The clone PS49 was tested against various pathogens including bacteria and fungi and it showed inhibitory effects against all the tested pathogens. The antimicrobially active fractions were then crystallized and subjected to spectroscopic analysis such as FTIR, NMR and LC-MS analysis. The substance from clone PS49 has finally been recognized, and the compound from clone PS49 has been identified as 8-demethoxy-10-deoxysteffimycin. The substances isolated from the PS49 clone exhibited strong anticancer activity against skin cancer-cell lines SK-MEL2. The compounds showed a reduction in cell viability with an increase in the compound concentration. The compounds obtained from clone PS49 showed an IC<sub>50</sub> value of 85 µg/ml.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"14 12","pages":"303"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11570573/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142674806","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of Xihuang Pill in inducing pyroptosis in glioma cells through modulation of miR-21-5p. 通过调节 miR-21-5p 评估西黄丸诱导胶质瘤细胞热休克的作用
IF 2.6 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-11-09 DOI: 10.1007/s13205-024-04148-7
Ning Tang, Nuojin Geng, Xinhua Zhu

This study aims to elucidate the mechanism by which Xihuang Pill induces pyroptosis in glioma cells via the regulation of miR-21-5p. Human glioma cell lines U-87 and LN-229 were used as experimental models to assess the effects of Xihuang Pill on glioma pyroptosis. Cells were incubated with Xihuang Pill extract at concentrations of 7.5, 15, and 30 µg/mL for 24 h, alongside transfection with miR-21-5p mimic, an overexpression vector for STAT3, or incubation with 50 µg/mL of the STAT3 activator Colivelin for 4 h. Cell viability was measured using the CCK-8 assay, apoptosis was detected by flow cytometry, and expression levels of p-STAT3/STAT3 and pyroptosis-related proteins were determined by Western Blot. Additionally, cleaved caspase-1 was assessed by immunofluorescence, miR-21-5p expression by qRT-PCR, and STAT3 binding to the miR-21-5p promoter region by ChIP and dual-luciferase reporter assays. Results showed that Xihuang Pill significantly reduced cell viability, increased apoptosis, and upregulated the expression of pyroptosis-related proteins such as NLRP3, IL-1β, cleaved caspase-1, and GSDMD-N, while reducing p-STAT3/STAT3 and miR-21-5p levels (P < 0.05). Xihuang Pill inhibited STAT3 activation, which modulated miR-21-5p expression by binding to its promoter region. Co-transfection with miR-21-5p mimic reversed the effect of Xihuang Pill on glioma pyroptosis (P < 0.05). In conclusion, Xihuang Pill promotes glioma cell pyroptosis through the STAT3/miR-21-5p pathway.

本研究旨在阐明西黄丸通过调控miR-21-5p诱导胶质瘤细胞热休克的机制。以人胶质瘤细胞株U-87和LN-229为实验模型,评估西黄丸对胶质瘤热休克的影响。用浓度为7.5、15和30微克/毫升的西黄丸提取物培养细胞24小时,同时转染miR-21-5p模拟物、STAT3过表达载体或用50微克/毫升的STAT3激活剂Colivelin培养4小时。细胞活力用 CCK-8 法测定,细胞凋亡用流式细胞术检测,p-STAT3/STAT3 和热凋亡相关蛋白的表达水平用 Western 印迹法测定。此外,免疫荧光法检测了裂解的caspase-1,qRT-PCR法检测了miR-21-5p的表达,ChIP和双荧光素酶报告实验检测了STAT3与miR-21-5p启动子区域的结合。结果表明,西黄丸能明显降低细胞活力,增加细胞凋亡,上调NLRP3、IL-1β、裂解的caspase-1和GSDMD-N等细胞凋亡相关蛋白的表达,同时降低p-STAT3/STAT3和miR-21-5p水平(P<0.05)。
{"title":"Evaluation of Xihuang Pill in inducing pyroptosis in glioma cells through modulation of miR-21-5p.","authors":"Ning Tang, Nuojin Geng, Xinhua Zhu","doi":"10.1007/s13205-024-04148-7","DOIUrl":"https://doi.org/10.1007/s13205-024-04148-7","url":null,"abstract":"<p><p>This study aims to elucidate the mechanism by which Xihuang Pill induces pyroptosis in glioma cells via the regulation of miR-21-5p. Human glioma cell lines U-87 and LN-229 were used as experimental models to assess the effects of Xihuang Pill on glioma pyroptosis. Cells were incubated with Xihuang Pill extract at concentrations of 7.5, 15, and 30 µg/mL for 24 h, alongside transfection with miR-21-5p mimic, an overexpression vector for STAT3, or incubation with 50 µg/mL of the STAT3 activator Colivelin for 4 h. Cell viability was measured using the CCK-8 assay, apoptosis was detected by flow cytometry, and expression levels of p-STAT3/STAT3 and pyroptosis-related proteins were determined by Western Blot. Additionally, cleaved caspase-1 was assessed by immunofluorescence, miR-21-5p expression by qRT-PCR, and STAT3 binding to the miR-21-5p promoter region by ChIP and dual-luciferase reporter assays. Results showed that Xihuang Pill significantly reduced cell viability, increased apoptosis, and upregulated the expression of pyroptosis-related proteins such as NLRP3, IL-1β, cleaved caspase-1, and GSDMD-N, while reducing p-STAT3/STAT3 and miR-21-5p levels (P < 0.05). Xihuang Pill inhibited STAT3 activation, which modulated miR-21-5p expression by binding to its promoter region. Co-transfection with miR-21-5p mimic reversed the effect of Xihuang Pill on glioma pyroptosis (P < 0.05). In conclusion, Xihuang Pill promotes glioma cell pyroptosis through the STAT3/miR-21-5p pathway.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"14 12","pages":"295"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11550298/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142611913","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of piperine-haloperidol mixture on ketamine induced schizophrenia rats and metabolism-mediated inhibitory potency: in-vivo and in-vitro evaluation. 胡椒-氟哌啶醇混合物对氯胺酮诱导的精神分裂症大鼠的影响及其代谢介导的抑制效力:体内和体外评估。
IF 2.6 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-11-27 DOI: 10.1007/s13205-024-04160-x
B R Pradeepa, T M Vijayakumar, K Manikandan

Haloperidol, a conventional antipsychotic, was mixed with piperine in a ketamine-induced schizophrenia rat model to evaluate the interaction potential of this mixture through in-vitro and in-vivo analyses. Piperine, known for its CYP450 enzyme inhibitory effects, enhances the bioavailability of various drugs. Initial in-vitro assays using a high-throughput fluorometric method showed that the haloperidol-piperine mixture inhibited CYP3A4 and CYP2D6 enzymes, comparable to positive controls. In-vivo pharmacokinetic results revealed that piperine significantly increased haloperidol's plasma concentration and area under the curve while reducing clearance, indicating enhanced bioavailability. Pharmacodynamic assessments showed reductions in locomotor activity, immobility time, dopamine levels, and nitric oxide, with increased superoxide dismutase levels in the haloperidol-piperine group compared to haloperidol alone, reflecting enhanced therapeutic efficacy. These findings indicate that piperine can increase haloperidol exposure, potentially allowing for dose reduction and minimizing dose-related side effects. Limitations of this study include reliance on a rat model, which may not fully replicate human metabolism, and lack of long-term safety assessment. Future studies should explore the clinical applicability of this mixture in human trials, particularly focusing on safety, dosage optimization, and long-term effects. Additionally, understanding piperine's role in different metabolic pathways could guide the development of targeted bioavailability enhancers, improving efficacy for a range of CYP450-metabolized medications.

氟哌啶醇是一种传统的抗精神病药,在氯胺酮诱导的精神分裂症大鼠模型中与胡椒碱混合,通过体外和体内分析来评估这种混合物的相互作用潜力。胡椒碱以其CYP450酶抑制作用而闻名,可提高各种药物的生物利用度。采用高通量荧光法进行的初步体外分析显示,haloperidol-胡椒碱混合物抑制CYP3A4和CYP2D6酶,与阳性对照相当。体内药代动力学结果显示,胡椒碱显著增加氟哌啶醇的血药浓度和曲线下面积,同时降低清除率,表明提高了生物利用度。药效学评估显示,与单独使用氟哌啶醇相比,氟哌啶醇-胡椒碱组的运动活动、静止时间、多巴胺水平和一氧化氮水平均有所降低,超氧化物歧化酶水平升高,反映出治疗效果增强。这些发现表明,胡椒碱可以增加氟哌啶醇的暴露,从而可能减少剂量并使剂量相关的副作用最小化。本研究的局限性包括依赖于大鼠模型,可能无法完全复制人类代谢,以及缺乏长期安全性评估。未来的研究应该探索这种混合物在人体试验中的临床适用性,特别是关注安全性、剂量优化和长期效应。此外,了解胡椒碱在不同代谢途径中的作用可以指导靶向生物利用度增强剂的开发,提高一系列cyp450代谢药物的疗效。
{"title":"Effects of piperine-haloperidol mixture on ketamine induced schizophrenia rats and metabolism-mediated inhibitory potency: in-vivo and in-vitro evaluation.","authors":"B R Pradeepa, T M Vijayakumar, K Manikandan","doi":"10.1007/s13205-024-04160-x","DOIUrl":"https://doi.org/10.1007/s13205-024-04160-x","url":null,"abstract":"<p><p>Haloperidol, a conventional antipsychotic, was mixed with piperine in a ketamine-induced schizophrenia rat model to evaluate the interaction potential of this mixture through in-vitro and in-vivo analyses. Piperine, known for its CYP450 enzyme inhibitory effects, enhances the bioavailability of various drugs. Initial in-vitro assays using a high-throughput fluorometric method showed that the haloperidol-piperine mixture inhibited CYP3A4 and CYP2D6 enzymes, comparable to positive controls. In-vivo pharmacokinetic results revealed that piperine significantly increased haloperidol's plasma concentration and area under the curve while reducing clearance, indicating enhanced bioavailability. Pharmacodynamic assessments showed reductions in locomotor activity, immobility time, dopamine levels, and nitric oxide, with increased superoxide dismutase levels in the haloperidol-piperine group compared to haloperidol alone, reflecting enhanced therapeutic efficacy. These findings indicate that piperine can increase haloperidol exposure, potentially allowing for dose reduction and minimizing dose-related side effects. Limitations of this study include reliance on a rat model, which may not fully replicate human metabolism, and lack of long-term safety assessment. Future studies should explore the clinical applicability of this mixture in human trials, particularly focusing on safety, dosage optimization, and long-term effects. Additionally, understanding piperine's role in different metabolic pathways could guide the development of targeted bioavailability enhancers, improving efficacy for a range of CYP450-metabolized medications.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"14 12","pages":"314"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11602896/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142765310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Leveraging bacterial laccases to facilitate the decomposition of xenobiotic compounds: a review. 利用细菌漆酶促进外源化合物的分解:综述。
IF 2.6 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-11-28 DOI: 10.1007/s13205-024-04152-x
Kalyanee Bera, Debalina Bhattacharya, Mainak Mukhopadhyay

Xenobiotic compounds are artificial substances that are essential in our lives. These substances have a negative impact on the environment because they are long-lasting and biodegrade slowly or not at all in ecosystems. When xenobiotics leak into the ecosystem, they enter the food chain and negatively impact animals' and people's health across all trophic levels. Moreover, these pollutants have toxic, mutagenic, carcinogenic, and teratogenic effects on all living organisms. They can affect humans in ways such as brain and prostate gland abnormalities, abnormalities of children's behavior, skin disorders, liver issues, immune system impairment, and endocrine system distribution. Consequently, it is essential to remove harmful, non-biodegradable xenobiotics from the ecosystem. Degradation of these chemicals hence requires immediate attention and awareness. The physical-chemical methods for removing the pollutants are costly. Bioremediation is a concept that uses organisms to control the environment faster and with less labor. Bacterial laccase-mediated bioremediation offers inexpensive, environmentaly sustainable, and potential degradation mechanisms for different recalcitrant chemicals. At the high temperature, high pH, contact time, and concentration, bacterial laccase can degrade the xenobiotic compounds. After degradation, convert them into low-toxic, non-hazardous substances in the environment by oxidation, reduction, elimination, and ring-opening processes. The aspects of this review article are bacterial laccase-mediated xenobiotic compound degradation.

异种化合物是我们生活中必不可少的人造物质。这些物质对环境有负面影响,因为它们是持久的,在生态系统中生物降解缓慢或根本不降解。当外源生物泄漏到生态系统中时,它们会进入食物链,并对所有营养水平的动物和人类的健康产生负面影响。此外,这些污染物对所有生物都具有毒性、诱变性、致癌性和致畸性作用。它们可以通过大脑和前列腺异常、儿童行为异常、皮肤病、肝脏问题、免疫系统损伤和内分泌系统分布等方式影响人类。因此,必须从生态系统中清除有害的、不可生物降解的异种生物。因此,这些化学品的降解需要立即引起注意和认识。去除污染物的物理化学方法是昂贵的。生物修复是一种利用生物更快、更少人工控制环境的概念。细菌漆酶介导的生物修复为不同的顽固性化学物质提供了廉价、环境可持续和潜在的降解机制。在高温、高pH、接触时间和浓度条件下,细菌漆酶可以降解外生化合物。降解后,通过氧化、还原、消除、开环等过程,在环境中转化为低毒、无害物质。本文就细菌漆酶介导的外源化合物降解进行综述。
{"title":"Leveraging bacterial laccases to facilitate the decomposition of xenobiotic compounds: a review.","authors":"Kalyanee Bera, Debalina Bhattacharya, Mainak Mukhopadhyay","doi":"10.1007/s13205-024-04152-x","DOIUrl":"https://doi.org/10.1007/s13205-024-04152-x","url":null,"abstract":"<p><p>Xenobiotic compounds are artificial substances that are essential in our lives. These substances have a negative impact on the environment because they are long-lasting and biodegrade slowly or not at all in ecosystems. When xenobiotics leak into the ecosystem, they enter the food chain and negatively impact animals' and people's health across all trophic levels. Moreover, these pollutants have toxic, mutagenic, carcinogenic, and teratogenic effects on all living organisms. They can affect humans in ways such as brain and prostate gland abnormalities, abnormalities of children's behavior, skin disorders, liver issues, immune system impairment, and endocrine system distribution. Consequently, it is essential to remove harmful, non-biodegradable xenobiotics from the ecosystem. Degradation of these chemicals hence requires immediate attention and awareness. The physical-chemical methods for removing the pollutants are costly. Bioremediation is a concept that uses organisms to control the environment faster and with less labor. Bacterial laccase-mediated bioremediation offers inexpensive, environmentaly sustainable, and potential degradation mechanisms for different recalcitrant chemicals. At the high temperature, high pH, contact time, and concentration, bacterial laccase can degrade the xenobiotic compounds. After degradation, convert them into low-toxic, non-hazardous substances in the environment by oxidation, reduction, elimination, and ring-opening processes. The aspects of this review article are bacterial laccase-mediated xenobiotic compound degradation.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"14 12","pages":"317"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11604876/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142765322","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bioinformatics analysis and experimental validation of the oncogenic role of COL11A1 in pan-cancer. COL11A1在泛癌症中致癌作用的生物信息学分析和实验验证。
IF 2.6 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-12-01 Epub Date: 2024-11-04 DOI: 10.1007/s13205-024-04133-0
Xiaofeng Wan, Qingmei Deng, Anling Chen, Xinhui Zhang, Wulin Yang

The intricate expression patterns and oncogenic attributes of COL11A1 across different cancer types remain largely elusive. This study used several public databases (TCGA, GTEx, and CCLE) to investigate the pan-cancer landscape of COL11A1 expression, its prognostic implications, interplay with the immune microenvironment, and enriched signaling cascades. Concurrently, western blot analyses were performed to verify COL11A1 expression in lung adenocarcinoma (LUAD) cell lines and clinical samples. In addition, COL11A1 knockout cell lines were generated to scrutinize the functional consequences of COL11AI expression on cancer cell behavior by use MTT, colony formation, and scratch wound healing assays. A comprehensive database investigation revealed that COL11A1 was upregulated in a majority of tumor tissues and its expression was highly correlated with a patient's prognosis. Notably, genetic alterations in COL11A1 predominantly occurred as mutations, while its DNA methylation status inversely mirrored gene expression levels across multiple promoter regions. Our findings suggest that COL11A1 helps to modulate the tumor immune landscape and potentially acts through the epithelial-mesenchymal transition (EMT) pathway to exert its oncogenic function. Western blot analyses further substantiated the specific upregulation of COL11A1 in LUAD cell lines and tissues, suggesting a close association with the EMT process. Ablation of COL11A1 in cancer cells significantly reduced their proliferative, clonogenic, and migratory abilities, underscoring the functional significance of COL11A1 in tumor cell behavior. Collectively, this research revealed the prevalent overexpression of COL11A1 in pan-cancer tissues, its profound prognostic and microenvironmental correlations, and the mechanistic underpinnings of its tumor-promoting effects as mediated via EMT signaling. Our findings suggest that COL11A1 could serve as a prognostic and diagnostic biomarker and therapeutic target for cancer.

COL11A1在不同癌症类型中错综复杂的表达模式和致癌属性在很大程度上仍然难以捉摸。本研究利用几个公共数据库(TCGA、GTEx 和 CCLE)研究了 COL11A1 的泛癌症表达、其预后影响、与免疫微环境的相互作用以及丰富的信号级联。同时,还进行了 Western 印迹分析,以验证 COL11A1 在肺腺癌(LUAD)细胞系和临床样本中的表达。此外,研究人员还生成了 COL11A1 基因敲除细胞系,通过 MTT、菌落形成和划痕伤口愈合试验来研究 COL11AI 表达对癌细胞行为的功能性影响。一项全面的数据库调查显示,COL11A1在大多数肿瘤组织中上调,其表达与患者的预后高度相关。值得注意的是,COL11A1的基因改变主要表现为突变,而其DNA甲基化状态与多个启动子区域的基因表达水平成反比。我们的研究结果表明,COL11A1有助于调节肿瘤免疫格局,并可能通过上皮-间质转化(EMT)途径发挥其致癌功能。Western印迹分析进一步证实了COL11A1在LUAD细胞系和组织中的特异性上调,表明它与EMT过程密切相关。在癌细胞中消减 COL11A1 能明显降低其增殖、克隆和迁移能力,凸显了 COL11A1 在肿瘤细胞行为中的功能意义。总之,这项研究揭示了 COL11A1 在泛癌症组织中的普遍过表达、其与预后和微环境的密切关系,以及其通过 EMT 信号介导的肿瘤促进作用的机理基础。我们的研究结果表明,COL11A1 可作为癌症的预后和诊断生物标志物及治疗靶点。
{"title":"Bioinformatics analysis and experimental validation of the oncogenic role of COL11A1 in pan-cancer.","authors":"Xiaofeng Wan, Qingmei Deng, Anling Chen, Xinhui Zhang, Wulin Yang","doi":"10.1007/s13205-024-04133-0","DOIUrl":"10.1007/s13205-024-04133-0","url":null,"abstract":"<p><p>The intricate expression patterns and oncogenic attributes of COL11A1 across different cancer types remain largely elusive. This study used several public databases (TCGA, GTEx, and CCLE) to investigate the pan-cancer landscape of COL11A1 expression, its prognostic implications, interplay with the immune microenvironment, and enriched signaling cascades. Concurrently, western blot analyses were performed to verify COL11A1 expression in lung adenocarcinoma (LUAD) cell lines and clinical samples. In addition, COL11A1 knockout cell lines were generated to scrutinize the functional consequences of COL11AI expression on cancer cell behavior by use MTT, colony formation, and scratch wound healing assays. A comprehensive database investigation revealed that COL11A1 was upregulated in a majority of tumor tissues and its expression was highly correlated with a patient's prognosis. Notably, genetic alterations in <i>COL11A1</i> predominantly occurred as mutations, while its DNA methylation status inversely mirrored gene expression levels across multiple promoter regions. Our findings suggest that COL11A1 helps to modulate the tumor immune landscape and potentially acts through the epithelial-mesenchymal transition (EMT) pathway to exert its oncogenic function. Western blot analyses further substantiated the specific upregulation of COL11A1 in LUAD cell lines and tissues, suggesting a close association with the EMT process. Ablation of COL11A1 in cancer cells significantly reduced their proliferative, clonogenic, and migratory abilities, underscoring the functional significance of COL11A1 in tumor cell behavior. Collectively, this research revealed the prevalent overexpression of COL11A1 in pan-cancer tissues, its profound prognostic and microenvironmental correlations, and the mechanistic underpinnings of its tumor-promoting effects as mediated via EMT signaling. Our findings suggest that COL11A1 could serve as a prognostic and diagnostic biomarker and therapeutic target for cancer.</p>","PeriodicalId":7067,"journal":{"name":"3 Biotech","volume":"14 12","pages":"290"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11534945/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142589479","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
3 Biotech
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1