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Novel Diagnostic Approach for Acute Pharyngitis: Combining Machine Learning With Thermal Imaging. 急性咽炎的新型诊断方法:将机器学习与热成像技术相结合。
Pub Date : 2024-10-13 DOI: 10.1002/jbio.202400219
Oshrit Hoffer, Moriya Cohen, Maya Gerstein, Vered Shkalim Zemer, Yael Reichenberg, Dima Bykhovsky, Moshe Hoshen, Herman Avner Cohen

We evaluated the effect of infrared thermography (IRT) on the clinical assessment of bacterial and viral pharyngitis and its impact on the predictive value of the McIsaac score algorithm for streptococcal pharyngitis in children. We also investigated if IRT could distinguish between bacterial and viral pharyngitis. The study included children aged 2-17 years presenting with sore throat and fever over 38°C from November 1, 2021, to April 30, 2022. Of the 76 assessed children, 16 were excluded due to missing data or technical issues, leaving 60 children (32 males, 28 females) divided into three groups: Group A with streptococcal pharyngitis (N = 30), viral pharyngitis (N = 16), and healthy controls (N = 14). McIsaac score and IRT imaging showed a 90% positive predictive value for streptococcal pharyngitis. While IRT alone could not distinguish between bacterial and viral infections, it significantly increased the predictive value when combined with the McIsaac score.

我们评估了红外热成像(IRT)对细菌性和病毒性咽炎临床评估的影响,以及它对儿童链球菌性咽炎 McIsaac 评分算法预测价值的影响。我们还研究了 IRT 是否能区分细菌性咽炎和病毒性咽炎。研究纳入了 2021 年 11 月 1 日至 2022 年 4 月 30 日期间出现咽喉痛和发烧超过 38°C 的 2-17 岁儿童。在76名接受评估的儿童中,有16名儿童因数据缺失或技术问题被排除在外,剩下的60名儿童(32名男性,28名女性)被分为三组:患有链球菌性咽炎的 A 组(30 人)、病毒性咽炎组(16 人)和健康对照组(14 人)。McIsaac 评分和 IRT 成像对链球菌性咽炎的阳性预测值为 90%。虽然 IRT 无法单独区分细菌和病毒感染,但如果与 McIsaac 评分结合使用,其预测值会显著提高。
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引用次数: 0
High-Resolution Terahertz Spectroscopy for Medical Diagnostics. 用于医学诊断的高分辨率太赫兹光谱学。
Pub Date : 2024-10-12 DOI: 10.1002/jbio.202400316
Vladimir Vaks, Elena Domracheva, Maria Chernyaeva, Vladimir Anfertev, Andrey Ayzenshtadt, Kseniya Glushkova, Aleksandra Cherniaeva

The metabolomics-based approach to diagnostics and therapy monitoring is a fast-emerging trend in modern medicine. Terahertz nonstationary spectroscopy based on the induction and disintegration of freely decaying polarization in the gas mixture during the interaction of radiation with molecules at resonance frequencies is a high-sensitivity method for studying multicomponent gas mixtures, which is promising for identifying metabolites in the thermal decomposition products of biological samples. The paper presents the results of the application of high-resolution terahertz spectroscopy to the study of biological samples taken from patients with certain diseases (pathologically changed tissues of ear-nose-throat organs and similar pathologic tissues formed in other life support systems) to search for characteristic sets of metabolites characterizing the pathology. The world's first measurements of the spectra of pathologic samples of cysts, formed in different life support systems, were carried out, which made it possible to identify similar substances in tissues having the same pathology.

基于代谢组学的诊断和治疗监测方法是现代医学迅速发展的趋势。太赫兹非稳态光谱学基于共振频率下辐射与分子相互作用过程中气体混合物中自由衰减极化的感应和分解,是一种研究多组分气体混合物的高灵敏度方法,在鉴定生物样本热分解产物中的代谢物方面大有可为。本文介绍了应用高分辨率太赫兹光谱对某些疾病患者的生物样本(耳鼻喉器官的病理变化组织和其他生命支持系统中形成的类似病理组织)进行研究的结果,以寻找病理特征的代谢物特征集。世界上首次对不同生命维持系统中形成的囊肿病理样本的光谱进行了测量,从而有可能确定具有相同病理的组织中的类似物质。
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引用次数: 0
A Simple and Fast Optical Clearing Method for Whole-Mount Fluorescence In Situ Hybridization (FISH) Imaging. 用于整装荧光原位杂交 (FISH) 成像的简单快速光学清除方法。
Pub Date : 2024-10-10 DOI: 10.1002/jbio.202400258
Junwoo Suh, Yehe Liu, Jordan Smith, Michiko Watanabe, Andrew M Rollins, Michael W Jenkins

We report a single-step optical clearing method that is compatible with RNA fluorescence in situ hybridization (FISH) imaging. We previously demonstrated microscopy imaging with immunohistochemistry and genetic reporters using a technique called lipid-preserving refractive index matching for prolonged imaging depth (LIMPID). Our protocol reliably produces high-resolution three-dimensional (3D) images with minimal aberrations using high magnification objectives, captures large field-of-view images of whole-mount tissues, and supports co-labeling with antibody and FISH probes. We also custom-designed FISH probes for quail embryos, demonstrating the ease of fabricating probes for use with less common animal models. Furthermore, we show high-quality 3D images using a conventional fluorescence microscope, without using more advanced depth sectioning instruments such as confocal or light-sheet microscopy. For broader adoption, we simplified and optimized 3D-LIMPID-FISH to minimize the barrier to entry, and we provide a detailed protocol to aid users with navigating the thick and thin of 3D microscopy.

我们报告了一种与 RNA 荧光原位杂交 (FISH) 成像兼容的单步光学清除方法。此前,我们利用一种名为 "延长成像深度的脂质保留折射率匹配(LIMPID)"的技术,展示了免疫组化和基因报告的显微成像。我们的方案能利用高倍率物镜可靠地生成畸变最小的高分辨率三维(3D)图像,捕捉全装片组织的大视场图像,并支持抗体和 FISH 探针的联合标记。我们还为鹌鹑胚胎定制了 FISH 探针,展示了在不常见的动物模型中制作探针的简易性。此外,我们还使用传统荧光显微镜展示了高质量的三维图像,而无需使用共聚焦或光片显微镜等更先进的深度切片仪器。为了扩大应用范围,我们对 3D-LIMPID-FISH 进行了简化和优化,最大程度降低了入门门槛,并提供了详细的操作规程,帮助用户轻松驾驭三维显微镜。
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引用次数: 0
Impact of Graphene Oxide Nanoparticles on In Vitro Development of a Mouse Preimplantation Embryo and Interaction With the Zona Pellucida. 氧化石墨烯纳米粒子对小鼠植入前胚胎体外发育的影响以及与透明带的相互作用
Pub Date : 2024-10-01 DOI: 10.1002/jbio.202400268
Artashes V Karmenyan, Alexander S Krivokharchenko, Micahella N Sarmiento, Eviyona L Barus, Elena V Perevedentseva, Chia-Liang Cheng

The development of assisted reproductive technologies increases the likelihood of nanoparticles' (NPs) direct contact with gametes and embryos in in vitro conditions. Analyzing the influence of nanomaterials on the early mammalian embryo becomes increasingly relevant. This work is devoted to the effect of graphene oxide (GO) NPs on the in vitro development of mammalian embryos. Mouse 2-cell embryos were preincubated with GO NPs. The interaction of GO with the Zona Pellucida (ZP) of the embryo was investigated using fluorescence lifetime imaging with two-photon excitation (2p-FLIM). During embryo development, the NPs penetration into ZP (blastocyst stage) and perivitelline space (blastocyst hatching stage) was observed. Despite this, GO did not affect the embryo's ability to develop till late and hatching blastocysts. The mechanism of the NPs getting into the perivitelline space and the consequences of NP-embryo direct contact are discussed. The 2p-FLIM efficiency for studying NP interaction with mammalian embryos is evaluated.

辅助生殖技术的发展增加了纳米粒子(NPs)在体外条件下与配子和胚胎直接接触的可能性。分析纳米材料对哺乳动物早期胚胎的影响变得越来越重要。这项工作致力于研究氧化石墨烯 (GO) NPs 对哺乳动物胚胎体外发育的影响。小鼠 2 细胞胚胎与 GO NPs 进行了预培养。利用双光子激发荧光寿命成像(2p-FLIM)研究了 GO 与胚胎透明带(ZP)的相互作用。在胚胎发育过程中,观察到 NPs 穿透到透明带(囊胚期)和绒毛膜周围空间(囊胚孵化期)。尽管如此,GO 并不影响胚胎发育到后期和孵化囊胚的能力。本文讨论了 NP 进入细胞周间隙的机制以及 NP 与胚胎直接接触的后果。评估了 2p-FLIM 在研究 NP 与哺乳动物胚胎相互作用方面的效率。
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引用次数: 0
Photoplethysmography-Based Angiography of Skin Tumors in Arbitrary Areas of Human Body. 基于光速摄影的人体任意部位皮肤肿瘤血管造影。
Pub Date : 2024-09-26 DOI: 10.1002/jbio.202400242
Anastasia Guryleva, Alexander Machikhin, Ekaterina Orlova, Evgeniya Kulikova, Michail Volkov, Gaiane Gabrielian, Ludmila Smirnova, Marina Sekacheva, Olga Olisova, Ekaterina Rudenko, Olga Lobanova, Vera Smolyannikova, Tatiana Demura

Noninvasive, rapid, and robust diagnostic techniques for clinical screening of tumors located in arbitrary areas of the human body are in demand. To address this challenge, we analyzed the feasibility of photoplethysmography-based angiography for assessing vascular structures within malignant and benign tumors. The proposed hardware and software were approved in a clinical study involving 30 patients with tumors located in the legs, torso, arms, and head. High-contrast and detailed vessel maps within both benign and malignant tumors were obtained. We demonstrated that capillary maps are consistent and can be interpreted using well-established dermoscopic criteria for vascular morphology. Vessel mapping provides valuable details, which may not be available in dermoscopic images and can aid in determining whether a tumor is benign or malignant. We believe that the proposed approach may become a valuable tool in the preliminary cancer diagnosis and is suitable for large-scale screening.

临床上需要无创、快速、可靠的诊断技术来筛查人体任意部位的肿瘤。为了应对这一挑战,我们分析了基于光动力的血管造影术评估恶性和良性肿瘤内血管结构的可行性。在一项涉及 30 名腿部、躯干、手臂和头部肿瘤患者的临床研究中,建议的硬件和软件获得了认可。研究获得了良性和恶性肿瘤内的高对比度详细血管图。我们证明,毛细血管图是一致的,可以用成熟的皮肤镜标准来解释血管形态。血管图提供了宝贵的细节,这些细节可能是皮肤镜图像所不具备的,有助于确定肿瘤是良性还是恶性。我们相信,所提出的方法可能会成为初步诊断癌症的重要工具,并适用于大规模筛查。
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引用次数: 0
Microsaccades Tracking by Secondary Speckle Pattern Analysis. 通过二次斑点模式分析追踪微注视
Pub Date : 2024-09-09 DOI: 10.1002/jbio.202400184
Ola Shteinberg, Sergey Agdarov, Yafim Beiderman, Yoram S Bonneh, Inbal Ziv, Zeev Zalevsky

Here we propose a not pupil-dependent microsaccades tracking technique and a novel detection method. We present a proof of concept for detecting microsaccades using a non-contact laser-based photonic system recording and processing the temporal changes of speckle patterns scattered from an eye sclera. The data, simultaneously recorded by the speckle-based tracker (SBT) and the video-based eye tracker (Eyelink), was analyzed by the frequently used detection method of Engbert and Kliegl (E&K) and by advanced machine learning detection (MLD) techniques. We detected 93% of microsaccades in the SBT data out of microsaccades detected in the Eyelink data with the E&K method. By utilizing MLD, a precision of 86% was achieved. The findings of our study demonstrate a potential improvement in measuring tiny eye movements, such as microsaccades, using speckle-based eye tracking and, thus, an alternative to video-based eye tracking for detecting microsaccades.

在这里,我们提出了一种不依赖瞳孔的微注视跟踪技术和一种新颖的检测方法。我们提出了一种利用非接触式激光光子系统检测微注视的概念验证,该系统记录并处理从眼睛巩膜散射出的斑点图案的时间变化。数据由基于斑点的跟踪器(SBT)和基于视频的眼球跟踪器(Eyelink)同时记录,并通过常用的恩格伯特和克里格尔(E&K)检测方法以及先进的机器学习检测(MLD)技术进行分析。在 Eyelink 数据中使用 E&K 方法检测到的微注视中,我们在 SBT 数据中检测到了 93% 的微注视。通过使用 MLD,精确度达到了 86%。我们的研究结果表明,使用基于斑点的眼动仪测量微小的眼球运动(如微注视)具有潜在的改进空间,因此可以替代基于视频的眼动仪来检测微注视。
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引用次数: 0
Extracting Superficial Scattering by Q-Sensing Technique. 利用 Q 感应技术提取表层散射。
Pub Date : 2024-09-06 DOI: 10.1002/jbio.202400262
Alon Tzroya, Hamootal Duadi, Dror Fixler

Optical properties determine how light interacts with biological tissues. The current methods for measuring these optical properties are influenced by both deep and superficial skin layers. Polarization-based methods have been proposed in order to determine the influence of deep layer scattering. Polarized light allows for the separation of ballistic photons from diffuse ones, enhancing image contrast and resolution while providing additional tissue information. The Q-sensing technique captures co-polarized I $$ left({I}_{parallel}right) $$ and cross-polarized I $$ left({I}_{perp}right) $$ signals, making it possible to isolate the superficial scattering. However, the random structure of tissues leads to rapid depolarization of the polarized light. Detecting where the light becomes depolarized aids in sensing abnormalities within the tissues. Hence, this research focuses on identifying where depolarization occurs within the tissue. Tissue-mimicking phantoms, simulating the optical properties of biological tissues, are created to measure depolarization at various thicknesses. Experimental findings are validated with a Monte Carlo simulation, modeling polarized light behavior through the polydisperse tissue (as the tissue scatterers are heterogeneous in size). Additionally, the research demonstrates how polarized light can extract the optical properties of the medium.

光学特性决定了光与生物组织的相互作用。目前测量这些光学特性的方法受到皮肤深层和表层的影响。为了确定深层散射的影响,人们提出了基于偏振的方法。偏振光可将弹道光子从漫射光子中分离出来,提高图像对比度和分辨率,同时提供更多组织信息。Q-sensing 技术可捕获共偏振 I ∥ $ left({I}_{parallel}right) $$ 和交叉偏振 I ⊥ $ left({I}_{perp}right) $$ 信号,从而有可能分离表层散射。然而,组织的随机结构会导致偏振光迅速去极化。检测偏振光去极化的位置有助于感知组织内的异常。因此,这项研究的重点是确定组织内发生去极化的位置。研究人员制作了模拟生物组织光学特性的组织模型,以测量不同厚度组织的去极化情况。实验结果通过蒙特卡洛模拟进行了验证,模拟了偏振光穿过多分散组织的行为(因为组织散射体的大小是不均匀的)。此外,研究还展示了偏振光如何提取介质的光学特性。
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引用次数: 0
Investigation of the Effect of Compression Pressure in Contact OCT Imaging on the Measurement of Epidermis Thickness. 研究接触式 OCT 成像中的压缩压力对表皮厚度测量的影响
Pub Date : 2024-08-27 DOI: 10.1002/jbio.202400289
Zhiying Xie, Yaping Shi, Agathe Marmin, Ruikang K Wang

Optical coherence tomography (OCT) is a noninvasive 3D imaging technique that offers significant advantages over traditional microscopy and biopsy in measuring epidermal thickness (ET) when assessing skin conditions. However, OCT imagining is often required to be in a contact mode for mitigating the issues of subject movement and uneven skin topology. It is not known whether the contact would affect the ability of ET measurements. In this study, we investigate the relationship between the contact pressure applied and the ET measurements. We observed progressive deformation in the epidermis with the increase of compression forces, where a notable decrease of up to 13% in ET measurement and 70% decrease in capillary vessels was noted when imaging was in contact mode. We also observed 8.1% less deformation properties in scar tissue than in nearby healthy tissue. Our study underscored the importance of controlled pressure in contact imaging mode, which is often neglected.

光学相干断层扫描(OCT)是一种无创三维成像技术,与传统的显微镜和活组织检查相比,它在评估皮肤状况时测量表皮厚度(ET)方面具有显著优势。不过,OCT 成像通常需要在接触模式下进行,以减少受试者移动和皮肤拓扑不均匀的问题。目前还不清楚接触模式是否会影响 ET 测量的能力。在本研究中,我们研究了接触压力与 ET 测量之间的关系。我们观察到表皮随着压力的增加而逐渐变形,在接触模式下成像时,ET 测量值明显下降达 13%,毛细血管下降 70%。我们还观察到疤痕组织的变形特性比附近的健康组织低 8.1%。我们的研究强调了在接触成像模式下控制压力的重要性,而这一点往往被忽视。
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引用次数: 0
Incorporating artificial intelligence in portable infrared thermal imaging for the diagnosis and staging of nonalcoholic fatty liver disease. 将人工智能纳入便携式红外热成像,用于非酒精性脂肪肝的诊断和分期。
Pub Date : 2024-08-06 DOI: 10.1002/jbio.202400189
Yana Davidov, Rafael Y Brzezinski, Monica-Inda Kaufmann, Mariya Likhter, Tammy Hod, Orit Pappo, Yair Zimmer, Zehava Ovadia-Blechman, Neta Rabin, Adi Barlev, Orli Berman, Ziv Ben Ari, Oshrit Hoffer

Metabolic Dysfunction-Associated Steatotic Liver Disease (MASLD) is one of the most prevalent chronic liver diseases worldwide. Thermal imaging combined with advanced image-processing and machine learning analysis accurately classified disease status in a study on mice; this study aimed to develop this tool for humans. This prospective study included 46 patients who underwent liver biopsy. Liver thermal imaging was performed on the same day as liver biopsy. We developed an image-processing algorithm that measured the relative spatial thermal variation across the skin covering the liver. The texture parameters obtained from the thermal images were input into the machine learning algorithm. Patients were diagnosed with MASLD and stratified according to nonalcoholic fatty liver disease activity score (NAS) and fibrosis stage using the METAVIR score. Twenty-one of 46 patients were diagnosed with MASLD. Using thermal imaging followed by processing, detection accuracy for patients with NAS >4 was 0.72.

代谢功能障碍相关性脂肪肝(MASLD)是全球最普遍的慢性肝病之一。在一项针对小鼠的研究中,热成像与先进的图像处理和机器学习分析相结合,准确地对疾病状态进行了分类;本研究旨在为人类开发这一工具。这项前瞻性研究包括 46 名接受肝活检的患者。肝脏热成像与肝活检在同一天进行。我们开发了一种图像处理算法,用于测量覆盖肝脏皮肤的相对空间热变化。从热图像中获得的纹理参数被输入到机器学习算法中。患者被诊断为MASLD,并根据非酒精性脂肪肝活动评分(NAS)和纤维化分期使用METAVIR评分进行分层。46 名患者中有 21 人被确诊为 MASLD。使用热成像后进行处理,NAS>4患者的检测准确率为0.72。
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引用次数: 0
Analysis of image formation in optical palpation. 光学触诊图像形成分析。
Pub Date : 2024-07-30 DOI: 10.1002/jbio.202400180
R Jones, Q Fang, B F Kennedy

Optical palpation is an emerging elastography technique that generates two-dimensional images of mechanical stress at the tissue surface, with clinical applications such as intraoperative cancer detection and scar assessment. It has been implemented using various imaging systems, however, an analysis of how deformation of the sample and layer influences image formation has not been performed. Here, an analysis framework is presented, which assesses performance independently of the imaging system used. Optical palpation of varying samples and layers is simulated using finite element analysis and validated with experiments on silicone phantoms, providing a characterization of detectability, feature resolution, and contrast ratio. Using our framework, we demonstrate that computational optical palpation, which incorporates realistic assumptions of layer deformation, improves the feature resolution up to a factor of four. This framework can guide the development of optical palpation and aid in the selection of appropriate imaging system and layer properties for a given application.

光学触诊是一种新兴的弹性成像技术,可生成组织表面机械应力的二维图像,临床应用包括术中癌症检测和疤痕评估。该技术已通过各种成像系统实现,但尚未对样本和层的变形如何影响图像形成进行分析。本文提出了一个分析框架,可独立于所使用的成像系统评估性能。利用有限元分析模拟了不同样本和层的光学触诊,并通过硅胶模型实验进行了验证,提供了可探测性、特征分辨率和对比度的特征。利用我们的框架,我们证明了计算光学触诊结合了真实的层变形假设,可将特征分辨率提高达四倍。这个框架可以指导光学触诊的开发,并帮助为特定应用选择合适的成像系统和层特性。
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引用次数: 0
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Journal of biophotonics
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