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Whole Genome Sequencing Analysis of Cellulose-degrading Bacterium DC11 Isolated from Silkworm Excrement and Characterization of Its Key Cellulase Gene ytoP 纤维素降解菌 DC11 的全基因组测序分析及其关键纤维素酶基因 ytoP 的特性分析
IF 1.1 3区 农林科学 Q3 ENTOMOLOGY Pub Date : 2024-07-06 DOI: 10.1016/j.aspen.2024.102285
Yuanhao Zhang , Hao Li , Minqi Zhang , Xueping Jiang , Chen Chen , Xiaohui Zhang , Ran Zhang , Gaiqun Huang , Gang Liu , Zhongzheng Gui

In recent years, the microbial degradation of cellulose has emerged in addressing environmental pollution and acting as a substitute for scarce animal feeds. This study conducted a whole-genome sequencing analysis of a cellulose-degrading bacterium known as Bacillus subtilis DC11, previously isolated from the silkworm excrement. A critical cellulase gene was identified, namely ytoP. The ytoP gene was successfully cloned and expressed in E.coli using genetic engineering. ytoP is a segment of the endoglucanase gene in Bacillus subtilis DC11 and was found to be 1074 bp in size and encoded 357 amino acids. This study effectively constructed the cellulase expression vector and achieved successful expression of the ytoP gene from strain DC11 in E. coli BL21 (DE3). SDS-PAGE electrophoresis revealed that the protein had an approximate size range of 40–50 KDa and a concentration of around 3.675 mg/mL. An assay of enzyme activity demonstrated that the purified protein, with a concentration of approximately 100 μg/mL, exhibited a maximum activity of 12.980 U/mL. Through the integration of whole-genome sequencing and genetic engineering techniques, the critical cellulase gene ytoP from Bacillus subtilis DC11 has been successfully cloned and expressed, achieving highly efficient cellulase production. This study lays the foundation for large-scale applications of microbial cellulose degradation in the future.

近年来,微生物降解纤维素在解决环境污染和替代稀缺动物饲料方面崭露头角。本研究对一种名为枯草芽孢杆菌 DC11 的纤维素降解菌进行了全基因组测序分析。研究发现了一个关键的纤维素酶基因,即 ytoP。ytoP 是枯草芽孢杆菌 DC11 内切葡聚糖酶基因的一个片段,大小为 1074 bp,编码 357 个氨基酸。本研究有效地构建了纤维素酶表达载体,并成功地在大肠杆菌 BL21 (DE3) 中表达了菌株 DC11 的 ytoP 基因。SDS-PAGE 电泳显示,该蛋白的大小范围约为 40-50 KDa,浓度约为 3.675 mg/mL。酶活性测定表明,纯化蛋白的浓度约为 100 μg/mL,最大活性为 12.980 U/mL。通过整合全基因组测序和基因工程技术,成功克隆并表达了枯草芽孢杆菌 DC11 的关键纤维素酶基因 ytoP,实现了纤维素酶的高效生产。这项研究为今后微生物降解纤维素的大规模应用奠定了基础。
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引用次数: 0
Characterization and novel gene rearrangements in the mitochondrial genome of Chelonus munakatae (Hymenoptera: Braconidae): Insights into evolutionary dynamics and genomic variability Chelonus munakatae(膜翅目:腕足动物)线粒体基因组的特征和新基因重排:对进化动态和基因组变异性的启示
IF 1.1 3区 农林科学 Q3 ENTOMOLOGY Pub Date : 2024-07-03 DOI: 10.1016/j.aspen.2024.102286
Qianyi Yu , Ruizhong Yuan , Han Zhang , Xiaohan Shu , Jiachen Zhu , Zhengling Liu , Xiqian Ye , Youguo Zhan , Pu Tang , Xuexin Chen

Chelonus munakatae Matsumura (Hymenoptera: Braconidae) is an important parasitoid of several lepidopteran species. The mitochondrial genome of this species is a crucial source for molecular identification and genetic studies. Here, we used next-generation sequencing to obtain the C. munakatae mitochondrial genome, which was found to be 14,868 bp in length and contained 13 protein-coding genes, 22 tRNAs and two rRNAs. The nucleotide composition exhibits a significant bias towards A + T content, with a value of 86.8 %. A large number of PCG and tRNA gene rearrangement events were detected (I-V-M-C-W-Q and A-N-S1-E-R-F), which represent a novel rearrangement type in Hymenoptera. Furthermore, synteny analysis based on the whole mitochondrial genomes showed that a significant rearrangement of homologous blocks had occurred within this Braconidae species. This study not only delineates the mitochondrial characteristics of C. munakatae but also significantly contributes to the repository of mitochondrial genetic information for the Braconidae family. Moreover, it highlights the occurrence of gene rearrangement within Hymenoptera species, offering valuable insights into the evolutionary dynamics and genomic variability of these insects.

Chelonus munakatae Matsumura(膜翅目:腕足动物)是多种鳞翅目昆虫的重要寄生虫。该物种的线粒体基因组是分子鉴定和遗传研究的重要来源。在此,我们利用新一代测序技术获得了 C. munakatae 的线粒体基因组,发现其长度为 14,868 bp,包含 13 个蛋白编码基因、22 个 tRNA 和 2 个 rRNA。核苷酸组成明显偏向于 A + T,含量为 86.8%。发现了大量 PCG 和 tRNA 基因重排事件(I-V-M-C-W-Q 和 A-N-S1-E-R-F),这是膜翅目昆虫中一种新的重排类型。此外,基于整个线粒体基因组的同源分析表明,在该腕足动物种内发生了显著的同源块重排。这项研究不仅描述了 C. munakatae 的线粒体特征,还为腕足动物科的线粒体遗传信息库做出了重要贡献。此外,该研究还强调了膜翅目昆虫物种内部基因重排的发生,为了解这些昆虫的进化动态和基因组变异性提供了宝贵的资料。
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引用次数: 0
Effect of temperature on the development, reproduction and survival of Tetramoera schistaceana (Lepidoptera: Tortricidae) 温度对鳞翅目:旋毛虫科(Tetramoera schistaceana)的发育、繁殖和存活的影响
IF 1.1 3区 农林科学 Q3 ENTOMOLOGY Pub Date : 2024-06-22 DOI: 10.1016/j.aspen.2024.102284
Xue-Hong Pan, Ji-Li Wei, Xian-Kun Shang, Cheng-Hua Huang

Tetramoera schistaceana Snellen is an important stem borer of sugarcane, which causes severe damage to sugarcane in China. Temperature is a key factor affecting its development and reproduction. Development duration, reproduction and survival rate of T. schistaceana were determined at five different temperatures (20, 23, 26, 29 and 32 °C) in this study. Results showed that temperature had significant effects on the development duration, survival rate and reproduction of T. schistaceana. The development rate of T. schistaceana for each stage increased linearly with increasing temperatures between 20 and 32 °C. Egg hatching rate, larval pupation rate and pupal eclosion rate were the highest between 23 and 26 °C. The lower thermal threshold (T0) for egg, larva, pupa, pre-adult and whole generation were 9.98, 9.80, 9.47, 9.50 and 8.87 °C, respectively and the thermal constant (K) for the development of the respective life cycle stages of were 89.29 for eggs, 400.00 for larvae, 151.52 for pupae, 625.00 for pre-adult and 666.67DD for whole generation, respectively. The average fecundity per female was also the highest between 23 and 26 °C. Therefore the optimum temperature range for the development and reproduction of T. schistaceana was between 23 and 26 °C.

蔗螟(Tetramoera schistaceana Snellen)是一种重要的甘蔗螟虫,在中国对甘蔗造成严重危害。温度是影响其发育和繁殖的关键因素。本研究测定了五种不同温度(20、23、26、29 和 32 °C)下 T. schistaceana 的发育期、繁殖率和存活率。结果表明,温度对裂头蝇的发育期、存活率和繁殖率有显著影响。在 20 至 32 °C之间,随着温度的升高,血吸虫各阶段的发育速率呈线性增长。卵孵化率、幼虫化蛹率和蛹羽化率在 23 至 26 ° C 之间最高。卵、幼虫、蛹、前成虫和全代的较低热阈值(T0)分别为 9.98、9.80、9.47、9.50 和 8.87 °C,各生命周期阶段的发育热常数(K)分别为:卵 89.29、幼虫 400.00、蛹 151.52、前成虫 625.00 和全代 666.67DD。每只雌虫的平均受精率在 23 至 26 °C 之间也是最高的。因此,血吸虫发育和繁殖的最适温度范围为 23 至 26 °C。
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引用次数: 0
Cross-instar larval identification leads divergent decision on pest management: An example from white grubs on peanuts 交叉星体幼虫鉴定导致害虫管理决策的分歧:以花生上的白蛴螬为例
IF 1.1 3区 农林科学 Q3 ENTOMOLOGY Pub Date : 2024-06-20 DOI: 10.1016/j.aspen.2024.102283
Wen-Jun Cao , Yi-Nuo Chen , Ru-Jun Zhou, Lu Jiang

Accurate larval identification is a prerequisite for integrated pest management, but remains a long-term difficulty in insect taxonomy. Previous descriptions are mainly focused on the most disruptive final instar larvae. However, earlier instars especially cross-instar larval morphological comparisons were rarely delivered hitherto. Polyphylla laticollis and Maladera orientalis are pests that damage peanut crops at various developmental stages. The first instar larvae of P. laticollis and the mature larvae of M. orientalis attack peanuts simultaneously and cause different types of damage. In this study, we compared the life histories and larval morphologies through field investigations and scanning electron microscopy (SEM) observations. These cross-instar white grubs are similar in sizes, but exhibit morphological differences on their mouthparts, thoracic legs, anal slits, and rasters. This study presents a novel approach to larval identification, with a goal of generating new insights into integrated pest control practices on white grubs.

准确识别幼虫是虫害综合防治的先决条件,但长期以来仍是昆虫分类学中的一个难题。以前的描述主要集中在最具破坏性的末龄幼虫上。然而,迄今为止,早期态幼虫,尤其是交尾态幼虫的形态比较还很少见。Polyphylla laticollis 和 Maladera orientalis 是在不同发育阶段危害花生作物的害虫。P. laticollis 的初龄幼虫和 M. orientalis 的老熟幼虫同时为害花生,并造成不同类型的危害。在这项研究中,我们通过实地调查和扫描电子显微镜(SEM)观察,比较了两者的生活史和幼虫形态。这些交尾白蛴螬大小相似,但在口器、胸腿、肛裂和栅格上表现出形态差异。这项研究提出了一种新的幼虫鉴定方法,目的是为白蛴螬虫害综合防治实践提供新的见解。
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引用次数: 0
Potential of secondary metabolites from soil-derived actinomycetes as juvenile hormone disruptor and insecticides 土壤放线菌的次级代谢物作为幼年激素干扰物和杀虫剂的潜力
IF 1.1 3区 农林科学 Q3 ENTOMOLOGY Pub Date : 2024-06-18 DOI: 10.1016/j.aspen.2024.102279
Jong-Hoon Kim , Jae Young Choi , Dong Hwan Park , Yeon Ho Je

Actinomycetes represent sources of potential alternatives to chemicals as biological pest control agents, and several actinomycetes are known to produce metabolites with insecticidal activities against insect pests. Although these metabolites are eco-friendly and effective, it is necessary to identify a novel insect-specific insecticidal agents that can minimize the occurrence of resistance. Thus, in this study, we screened the juvenile hormone disruptor (JHD) and insecticidal activities of crude acetone extracts derived from various actinomycetes as novel biopesticide candidates. A total of 300 soil-derived actinomycetes were isolated from various sites in Korea, and were screened for their JHD and insecticidal activities against a range of important medical and agricultural pests. Among them, eight extracts showed high levels of JHD activity. The AN120590 strain showed a broad insecticidal spectrum with stably maintained JHD properties. Additionally, the dead larvae of Aedes albopictus and Plutella xylostella treated with acetone extracts of the AN120590 strain displayed morphological deformities similar to those of insects treated with juvenile hormone-based insect growth regulators (IGRs). These findings indicate that actinomycetes represent promising sources of novel IGRs that can be effectively applied as insecticides with a broad insecticidal spectrum.

放线菌是生物害虫控制剂的潜在化学替代品,已知有几种放线菌能产生对害虫具有杀虫活性的代谢物。尽管这些代谢物环保且有效,但仍有必要找到一种新型的昆虫特异性杀虫剂,以减少抗药性的产生。因此,在本研究中,我们筛选了从各种放线菌中提取的丙酮粗提取物的幼虫激素干扰素(JHD)和杀虫活性,将其作为新型生物杀虫剂候选物。从韩国不同地点共分离出 300 种土壤放线菌,并对其针对一系列重要的医疗和农业害虫的 JHD 和杀虫活性进行了筛选。其中,有 8 种提取物显示出高水平的 JHD 活性。AN120590 菌株具有广泛的杀虫谱,并能稳定地保持 JHD 特性。此外,用 AN120590 株系的丙酮提取物处理的白纹伊蚊和木虱幼虫的死亡形态与用基于幼虫激素的昆虫生长调节剂(IGRs)处理的昆虫相似。这些研究结果表明,放线菌是新型 IGRs 的理想来源,可有效用作杀虫剂,具有广泛的杀虫谱。
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引用次数: 0
Deltamethrin resistance intensity and synergistic effect of piperonyl butoxide for combating Aedes aegypti in dengue fever endemic areas in Thailand 泰国登革热流行地区对溴氰菊酯的抗药性强度和胡椒基丁醚防治埃及伊蚊的增效作用
IF 1.1 3区 农林科学 Q3 ENTOMOLOGY Pub Date : 2024-06-17 DOI: 10.1016/j.aspen.2024.102282
Kanutcharee Thanispong , Sunaiyana Sathantriphop , Monthathip Kongmee , Wachiraporn Chitjaroen , Pracha Sukchot , Pasuree Suwannarat , Anchana Sumarnrote

Insecticide resistance is threatening the effectiveness of efforts to control dengue vectors in Thailand. This study explores the levels of insecticide resistance in Aedes aegypti mosquitoes to deltamethrin. A study was carried out in dengue-endemic areas of Thailand to find the situation of insecticide susceptibility status of dengue vectors. Female Ae. aegypti mosquitoes were collected from 8 districts in different provinces and were exposed to various discriminating concentrations of deltamethrin (1×, 5×, and 10×) using the WHO insecticide resistance intensity bioassay. All tested populations of Ae. aegypti were found to be resistant to the WHO discriminating concentration of deltamethrin (0.03%). Mosquito populations collected from Surat Thani (SUT), Nakhon Si Thammarat (NST) and Ayutthaya (AYU) Provinces were resistant to deltamethrin exposure up to 10× the discriminating concentration suggesting the high resistant intensity. The effect of pre-exposure to the insecticide synergist, piperonyl butoxide (PBO), was also tested at the discriminating concentration of 0.03% deltamethrin. A significant increase in susceptibility to deltamethrin and knockdown percentage was observed in all populations of mosquitoes that were pre-exposed to PBO. These findings indicate that dengue control in Thailand with deltamethrin only could be threatened by high resistance in Ae. aegypti populations. It is recommended that vector control strategies incorporating PBO as an effective synergist can enhance the susceptibility of mosquitoes in the presence of deltamethrin resistance.

杀虫剂抗药性正威胁着泰国登革热病媒控制工作的有效性。本研究探讨了埃及伊蚊对溴氰菊酯的杀虫剂抗药性水平。研究在泰国登革热流行地区进行,以了解登革热病媒对杀虫剂的敏感性状况。研究人员从不同省份的 8 个地区收集了埃及姬蚊,并采用世界卫生组织杀虫剂抗药性强度生物测定法将其暴露于不同浓度的溴氰菊酯(1×、5×和 10×)。结果发现,所有接受测试的埃及姬蚊种群都对世卫组织的溴氰菊酯鉴别浓度(0.03%)具有抗药性。从素叻他尼府(SUT)、那空四榄府(NST)和大城府(AYU)采集的蚊子种群对溴氰菊酯的抗药性高达鉴别浓度的 10 倍,表明抗药性强度很高。在0.03%溴氰菊酯的鉴别浓度下,还测试了预先接触杀虫剂增效剂胡椒基丁醚(PBO)的效果。在所有预先接触过 PBO 的蚊子种群中,都观察到对溴氰菊酯的敏感性和击倒率明显增加。这些研究结果表明,在泰国仅使用溴氰菊酯控制登革热可能会受到埃及蚁高抗药性的威胁。建议将 PBO 作为一种有效的增效剂纳入病媒控制战略,以便在存在溴氰菊酯抗药性的情况下提高蚊子的易感性。
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引用次数: 0
Differentially and spatially expressed genes in the reproductive organs of the honeybee (Apis mellifera) drones 蜜蜂(Apis mellifera)无人驾驶飞行器生殖器官中的差异和空间表达基因
IF 1.5 3区 农林科学 Q3 ENTOMOLOGY Pub Date : 2024-06-15 DOI: 10.1016/j.aspen.2024.102281
Jin Myung Kim , Yong Soo Choi , Kwang Sik Lee , Byung Rae Jin

During the mating of honeybees (Apis mellifera), the seminal fluid and sperm produced by the drones’ reproductive organs are transferred to the queens’ spermatheca. However, compared to the reproductive organs of the queens, little is known about those of the drones. To identify genes that are differentially expressed in the drones’ reproductive organs during sexual maturation, we conducted a comprehensive transcriptome analysis of the respective organs across various developmental stages. Our investigation identified 20 genes with over a 50-fold enhancement in expression relative to their basal levels upon emergence. Among these genes, 13 had been previously predicted, while 7 had not been characterized. We conducted qRT-PCR to analyze the differential and spatial expression profiles of the identified 20 genes in the testes, seminal vesicles, and mucous glands of the drones. Our findings suggest that certain genes exhibit significantly elevated expressions in the reproductive tissues of the drones, indicating their potentially crucial roles in the reproduction of honeybees.

在蜜蜂(Apis mellifera)的交配过程中,由雄蜂生殖器官产生的精液和精子被转移到雌蜂的精巢。然而,与蜂王的生殖器官相比,人们对雄蜂的生殖器官知之甚少。为了确定无人机生殖器官在性成熟过程中差异表达的基因,我们对各个发育阶段的生殖器官进行了全面的转录组分析。我们的调查发现,有 20 个基因在出现时的表达量比其基础水平提高了 50 倍以上。在这些基因中,有 13 个是以前预测过的,而 7 个则还没有表征过。我们通过 qRT-PCR 分析了这 20 个基因在无人机睾丸、精囊和粘液腺中的差异和空间表达谱。我们的研究结果表明,某些基因在雄蜂生殖组织中的表达量明显升高,这表明它们在蜜蜂的繁殖过程中可能起着至关重要的作用。
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引用次数: 0
Differential ovipositional preferences of Acraea terpsicore (Lepidoptera: Nymphalidae) on congeneric wild and introduced cultivated Passiflora plants based on differences in leaf characteristics 鳞翅目:蛱蝶科)根据叶片特征的差异对同源野生和引进栽培西番莲植物的不同产卵偏好
IF 1.5 3区 农林科学 Q3 ENTOMOLOGY Pub Date : 2024-06-10 DOI: 10.1016/j.aspen.2024.102280
Chitsanuphong Phanthian , Vichaya Auvichayapat , Chatchawan Chaisuekul

Acraea terpsicore (Linnaeus, 1758) can utilize multiple host plants, particularly those in genus Passiflora, and poses a potential pest risk for introduced Passiflora plants and economically significant crops. In this study, the ovipositional preferences of an A. terpsicore population were investigated on four Passiflora species, including the wild host plant P. foetida, the fruit crop plant P. edulis, and two ornamental flower plants, P. × alata-caerulea and P. × coccinea-caerulea, as well as two non-Passiflora plants, Cucumis sativus and Vigna unguiculata. From a total of 4,059 eggs and 3,135 caterpillars, the majority of eggs were oviposited on P. foetida (50.63 %), followed by P. × coccinea-caerulea (23.40 %), P. × alata-caerulea (20.65 %), and P. edulis (5.32 %). Similarly, caterpillars were predominantly observed on P. foetida (38.66 %) and P. × coccinea-caerulea (38.50 %), followed by P. × alata-caerulea (17.86 %) and P. edulis (4.98 %). Meanwhile, neither eggs nor caterpillars were found on the non-Passiflora plants. Interestingly, the abundance of predatory arthropods mirrored the distribution of caterpillars. In addition, temperature and humidity strongly influenced the number of observed eggs and caterpillars. Although A. terpsicore preferred to oviposit on P. foetida, its caterpillars were equally abundant on P. × coccinea-caerulea. These differential ovipositional preferences and caterpillar proportions may be attributed to ovipositional preferences rather than caterpillars’ preferences. Although A. terpsicore is regarded as a non-pest species at present, this status may be altered if it encounters congeneric plants resembling its wild host plant within landscapes.

赤眼蜂(Acraea terpsicore)(林尼厄斯,1758 年)可以利用多种寄主植物,尤其是西番莲属植物,对引进的西番莲植物和具有重要经济价值的作物构成潜在的虫害风险。本研究调查了 A. terpsicore 种群在四种西番莲植物上的产卵偏好,包括野生寄主植物 P. foetida、果实作物植物 P. edulis、两种观赏花卉植物 P. × alata-caerulea 和 P. × coccinea-caerulea,以及两种非西番莲植物 Cucumis sativus 和 Vigna unguiculata。在总共 4,059 枚卵和 3,135 只毛虫中,大多数卵产于 P. foetida(50.63 %),其次是 P. × coccinea-caerulea(23.40 %)、P. × alata-caerulea(20.65 %)和 P. edulis(5.32 %)。同样,毛虫主要分布在 P. foetida(38.66 %)和 P. × coccinea-caerulea(38.50 %)上,其次是 P. × alata-caerulea(17.86 %)和 P. edulis(4.98 %)。同时,在非西番莲植株上既没有发现卵,也没有发现毛虫。有趣的是,捕食性节肢动物的数量与毛虫的分布一致。此外,温度和湿度对观察到的卵和毛虫数量也有很大影响。虽然 A. terpsicore 喜欢在 P. foetida 上产卵,但它的毛虫在 P. × coccinea-caerulea 上也同样多。这些不同的产卵偏好和毛虫比例可能归因于产卵偏好,而不是毛虫的偏好。虽然目前 terpsicore 被认为是一种非害虫物种,但如果它在景观中遇到与其野生寄主植物相似的同属植物,这种地位可能会改变。
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引用次数: 0
Host plant status of different cover crops for Pratylenchus penetrans and Meloidogyne chitwoodi 不同覆盖作物对 Pratylenchus penetrans 和 Meloidogyne chitwoodi 的寄主植物状况
IF 1.5 3区 农林科学 Q3 ENTOMOLOGY Pub Date : 2024-06-09 DOI: 10.1016/j.aspen.2024.102272
Alexander Mbiro , Bekele.G. Kelbessa , Wim W.L. Wesemael

Nine different cover crops (different species or cultivars) were evaluated for their potential use in management of Pratylenchus penetrans and Meloidogyne chitwoodi. Pot experiments were done to assess the host status of cover crops in mixtures or as individual stands. Each pot was inoculated with 2000 M. chitwoodi (second-stage juveniles) or 500 P. penetrans (mixture of juveniles and adults). The experiments were terminated after 60 days and nematodes were extracted from both mineral and organic fractions. Based on nematode reproduction factor, alfalfa cv. Alpha + fodder radish cv. Doublemax mixture, white clover cv. Melital + bird’s foot trefoil cv. Bull mixture, red clover cv. Lemmon + arugula cv. Nemat mixture, English ryegrass cv. Meltador + arugula cv. Nemat mixture, fodder radish cv. Doublemax, bird’s foot trefoil cv. Bull and arugula cv. Nemat, with reproduction factors 0.24, 0.76, 0.54, 0.92, 0.15, 0.22 and 0.17, respectively, were poor hosts of M. chitwoodi while Fodder radish cv. Doublemax, English ryegrass cv. Meltador and arugula cv. Nemat with reproduction factors 0.74, 0.81 and 0.69, respectively, were poor hosts of P. penetrans.

对九种不同的覆盖作物(不同的品种或栽培品种)进行了评估,以确定它们在防治Pratylenchus penetrans和Meloidogyne chitwoodi方面的潜在用途。盆栽实验用于评估覆盖作物混种或单独种植的寄主状况。每个花盆接种了 2000 头恙虫(第二阶段幼虫)或 500 头穿心栉水母(幼虫和成虫的混合物)。实验在 60 天后结束,并从矿物质和有机物中提取线虫。根据线虫繁殖系数,紫花苜蓿品种阿尔法+饲料萝卜品种Doublemax混合物、白三叶品种Melital+鸟脚三叶草变种.公牛混合物、红三叶草莱蒙+芝麻菜 Nemat 混合物、英国黑麦草 Meltador+芝麻菜 Nemat 混合物、饲料萝卜 Doublemax、鸟脚三叶草 Nemat 混合物。多倍体、鸟脚三叶草变种、牛和芝麻菜变种。Nemat 混合物、饲料萝卜变种 Doublemax、鸟脚三叶草变种 Bull 和芝麻菜变种 Nemat 的繁殖系数分别为 0.24、0.76、0.54、0.92、0.15、0.22 和 0.17,它们都是壳斗霉菌的不良寄主。而饲料萝卜变种 Doublemax、英国黑麦草变种 Meltador 和芝麻菜变种 Nemat(繁殖系数分别为 0.74、0.81 和 0.69)则是 P. penetrans 的不良寄主。
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引用次数: 0
Comparative analysis of codon usage patterns of venom gland-specific honeybee-infecting viruses in solitary hunting and social wasps 独居狩猎蜂和群居蜂毒腺特异性蜜蜂感染病毒密码子使用模式的比较分析
IF 1.5 3区 农林科学 Q3 ENTOMOLOGY Pub Date : 2024-06-08 DOI: 10.1016/j.aspen.2024.102276
Kyungjae Andrew Yoon , Woo Jin Kim , Si Hyeock Lee

To identify the evolutionary traits of honeybee-infecting viruses (HVs), including black queen cell virus (BQCV), deformed wing virus (DWV), and Israeli acute paralysis virus (IAPV), and their adaptation patterns in the venom gland of different hosts, we conducted a comparative analysis of codon usage patterns of venom gland-specific HVs in honeybees, solitary hunting, and social wasps. The nucleotides A and U, as well as the nucleotide composition at the third position of synonymous codons (A3s and U3s), were abundantly present with high frequencies in the polyprotein region of the three HVs in Apis mellifera, solitary hunting, and social wasps. Although the three HVs exhibited a high codon adaptation index, effective number of codons and the frequencies of GC3s were observed to be high and low, respectively, indicating a low codon usage bias in the three HVs. The relative abundance of dinucleotides, nucleotide compositions, and the aromaticity of amino acids might be considered as reasons for the different codon usage patterns of the three HVs in solitary hunting and social wasps compared to A. mellifera. The result of phylogenetic analysis revealed that DWV possesses a unique evolutionary pattern compared to the lineages of Aculeate species, possibly caused by specific ecological interactions. Our study provides further insights into the evolutionary aspects of venom gland-specific HVs in Aculeate species and might contribute as fundamental information for further research on the evolution of HVs.

为了确定蜜蜂感染病毒(HVs),包括黑蜂王细胞病毒(BQCV)、畸形翅病毒(DWV)和以色列急性麻痹病毒(IAPV)的进化特征及其在不同宿主毒腺中的适应模式,我们对蜜蜂、独居狩猎蜂和社会蜂毒腺特异性HVs的密码子使用模式进行了比较分析。在蜜蜂、独居狩猎蜂和社会蜂的三种 HVs 的多聚蛋白区中,核苷酸 A 和 U 以及同义密码子第三位上的核苷酸组成(A3s 和 U3s)以高频率大量存在。虽然三种 HVs 的密码子适应指数较高,但观察到的有效密码子数量和 GC3s 频率分别较高和较低,表明三种 HVs 的密码子使用偏差较小。二核苷酸的相对丰度、核苷酸的组成以及氨基酸的芳香性可能是造成独居狩猎蜂和群居蜂的密码子使用模式与 A. mellifera 不同的原因。系统进化分析的结果表明,DWV与Aculeate蜂类相比具有独特的进化模式,这可能是由特定的生态相互作用引起的。我们的研究进一步揭示了Aculeate物种毒腺特异性HVs的进化过程,为进一步研究HVs的进化提供了基础信息。
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Journal of Asia-pacific Entomology
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