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The postbiotic Lactobacillus kunkeei NCHBL-003 attenuates Mycobacterium abscessus-induced pulmonary inflammation by modulating IL-1β production 后生乳杆菌kunkeei NCHBL-003通过调节IL-1β的产生来减轻脓肿分枝杆菌诱导的肺部炎症。
IF 3.5 3区 医学 Q3 IMMUNOLOGY Pub Date : 2026-01-19 DOI: 10.1016/j.micpath.2026.108310
Do-Hyeon Jung , Tae-Sung Lee , Yeong-Jun Kim , Yun-Ji Lee , In-Su Seo , Wan-Gyu Kim , Sang-Eun Jung , Ji-Yeong Kim , So-Yeon Ahn , Sung Jae Shin , Hong-Bum Koh , Eun-Jung Song , Ah-Ra Jang , Yu-Bin Lee , Jeon-Kyung Kim , Jong-Hwan Park
Mycobacterium abscessus (MAB), a rapidly growing nontuberculous mycobacterium, is a leading cause of chronic pulmonary infections, particularly among immunocompromised individuals. Owing to its intrinsic antibiotic resistance and persistence, MAB remains a therapeutic challenge. Activation of the NLRP3 inflammasome plays a central role in host inflammation by promoting IL-1β maturation and pyroptosis. Here, we investigated the anti-inflammatory effects of heat-killed Lactobacillus kunkeei NCHBL-003 (HK-LK), derived from honeybees, in MAB-induced pulmonary inflammation. In bone marrow-derived macrophages (BMDMs), HK-LK pretreatment suppressed MAB-induced gene expression of NLRP3, IL-1β, and TNF-α, and reduced cleavage of caspase-1 and IL-1β, without impairing bacterial clearance. In vivo, oral administration of HK-LK alleviated MAB-induced pulmonary inflammation and suppressed NLRP3-associated protein expression in lung tissues, while lung bacterial loads remained unchanged. Notably, similar anti-inflammatory effects were observed in both wild-type and TLR2-deficient mice, suggesting that TLR2 contributes but is not solely responsible for HK-LK–mediated protection. Gut microbiota analysis revealed significant Bray–Curtis dissimilarity following HK-LK treatment, despite unchanged α-diversity and UniFrac metrics. HK-LK reduced the abundance of Firmicutes, implying a role for gut microbiota modulation in its protective effects. Collectively, these findings demonstrate that HK-LK mitigates MAB-induced inflammation by modulating the NLRP3 inflammasome pathway and gut microbiota, highlighting its potential as an adjunctive strategy for mycobacterial infections.
脓肿分枝杆菌(MAB)是一种快速生长的非结核分枝杆菌,是慢性肺部感染的主要原因,特别是在免疫功能低下的个体中。由于其固有的抗生素耐药性和持久性,MAB仍然是一个治疗挑战。NLRP3炎性小体的激活通过促进IL-1β成熟和焦亡在宿主炎症中起核心作用。在这里,我们研究了来自蜜蜂的热杀乳杆菌kunkeei NCHBL-003 (HK-LK)在单克隆抗体诱导的肺部炎症中的抗炎作用。在骨髓源性巨噬细胞(bmdm)中,HK-LK预处理抑制了单克隆抗体诱导的NLRP3、IL-1β和TNF-α的基因表达,并减少了caspase-1和IL-1β的裂解,但不影响细菌的清除。在体内,口服HK-LK减轻了单克隆抗体诱导的肺部炎症,抑制了肺组织中nlrp3相关蛋白的表达,而肺部细菌负荷保持不变。值得注意的是,在野生型和TLR2缺陷小鼠中观察到相似的抗炎作用,这表明TLR2参与但不是唯一负责hk - lk介导的保护。尽管α-多样性和UniFrac指标没有变化,但HK-LK治疗后的肠道微生物群分析显示出显著的Bray-Curtis差异。HK-LK降低了厚壁菌门的丰度,这意味着肠道微生物群调节在其保护作用中的作用。总的来说,这些发现表明HK-LK通过调节NLRP3炎性体途径和肠道微生物群来减轻单克隆抗体诱导的炎症,突出了其作为分枝杆菌感染辅助策略的潜力。
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引用次数: 0
A novel Escherichia phage against multidrug-resistant hybrid IPEC/ExPEC Escherichia coli 一种抗多药耐药杂交IPEC/ exic大肠杆菌的新型噬菌体。
IF 3.5 3区 医学 Q3 IMMUNOLOGY Pub Date : 2026-01-19 DOI: 10.1016/j.micpath.2026.108308
Napakhwan Imklin , Kotryna Kvederavičiūtė , Wanchana Aesomnuk , Siwaret Arikit , Pornchalit Assavacheep , Eugenijus Šimoliūnas , Rujikan Nasanit

Aims

In this work, Escherichia coli isolates from pig specimens were investigated for their virulence and drug-resistant profiles. Escherichia phage nasanit was isolated, characterized, and assessed its lytic activity against its host.

Methods and results

All tested E. coli isolates were identified as multidrug-resistant hybrid intestinal pathogenic E. coli/extraintestinal pathogenic E. coli (IPEC/ExPEC). The phage exhibited infectivity against E. coli isolates from porcine and bovine specimens by spot testing. Lytic activity assays against its host in simulated intestinal fluid at 39 °C and tryptic soy broth at 30 °C demonstrated a significant reduction in bacterial density at 30 °C. Genomic analysis confirmed the absence of undesirable genes, and comparative genomic analysis suggested that the phage constitutes a novel species within the Berlinvirus genus.

Conclusion

Escherichia phage nasanit demonstrates potential as a biosanitizing agent for mitigating livestock-associated colibacillosis in swine environments.

Impact statement

E. coli isolates harbored both IPEC and ExPEC virulence genes, coupled with a multidrug resistance, posing a significant risk for diverse disease in swine. Escherichia phage nasanit demonstrated lytic activity against pathogenic E. coli associated with swine and bovine diseases. The phage efficacy in eliminating the tested E. coli suggests its potential application for biosanitation in the swine industry.
目的:研究猪分离的大肠杆菌的毒力和耐药谱。分离了纳氏噬菌体,对其进行了鉴定,并评价了其对宿主的裂解活性。方法与结果:所有大肠杆菌分离株均鉴定为多重耐药肠道致病性大肠杆菌/肠外致病性大肠杆菌(IPEC/ExPEC)。通过现场检测,该噬菌体对猪和牛的大肠杆菌分离株具有感染性。在39°C的模拟肠液和30°C的胰蛋白酶豆汤中对其宿主的裂解活性测定表明,在30°C时细菌密度显著降低。基因组分析证实不存在不良基因,比较基因组分析表明该噬菌体构成柏林病毒属的一个新种。结论:噬菌体大肠杆菌显示了作为生物消毒剂在猪环境中减轻家畜相关大肠杆菌病的潜力。影响声明:大肠杆菌分离物同时携带IPEC和ExPEC毒力基因,加上多药耐药性,对猪的多种疾病构成重大风险。大肠杆菌噬菌体对与猪和牛疾病相关的致病性大肠杆菌具有裂解活性。噬菌体清除大肠杆菌的效果表明其在养猪业生物卫生方面的潜在应用。
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引用次数: 0
Maxing Shigan decoction serves as a key component of Lianhua Qingwen in alleviating lung and gut injury by restoring gut microbiota homeostasis and inhibiting inflammation via TLR4/NF-κB and JAK2/STAT3 dual regulation 麻杏石肝汤通过TLR4/NF-κB和JAK2/STAT3双调控恢复肠道菌群稳态,抑制炎症,是连花清文减轻肺、肠损伤的关键成分。
IF 3.5 3区 医学 Q3 IMMUNOLOGY Pub Date : 2026-01-19 DOI: 10.1016/j.micpath.2026.108285
Caiyun Yuan , Peipei Jin , Zhuo He , Jing Guo , Mingyu Xiong , Jiemeng Sun , Le Wang , Zixuan Wang , Ningxin Han , Wei Feng , Yunlong Hou , Hui Qi , Zhenhua Jia
Lianhua Qingwen (LHQW), a clinically validated herbal medicine containing Maxing Shigan Decoction (MXSGT) and others, shows broad efficacy in various respiratory disease. However, its regulatory role on the gut-lung axis, particularly the contribution of its MXSGT components, remains unexplored. This study employed a formula-disassembled approach to decipher this mechanism. Three preparations, including the complete LHQW prescription, LHQW excluding MXSGT components (LHQW-MXSGT), and MXSGT along, were administered to LPS-induced acute lung injury and DSS-induced ulcerative colitis to evaluate their therapeutic effects via the gut-lung axis. Pathological changes, mucosal barrier integrity, inflammatory cell infiltration and pro-inflammatory cytokine levels were evaluated by H&E staining, histochemical staining, immunofluorescence, ELISA, RT-qPCR and Western blot. Metagenomic analysis (16S rDNA sequencing) was conducted to examine their regulatory role of gut microbiota. Network pharmacology analysis and cellular validation was employed to explore their underlying mechanisms. Our analyses demonstrated that LHQW and MXSGT, but not LHQW-MXSGT, significantly attenuated lung/intestinal pathology damage, reduced pro-inflammatory cytokines (TNF-α, IL-1β, IL-6), and restored gut barrier proteins (ZO-1, Occludin, MUC2). LHQW/MXSGT suppressed pathogenic bacteria (Escherichia coli, Salmonella, Klebsiella pneumoniae) while enriching Akkermansia muciniphila, correlating with decreased systemic LPS. Network pharmacology and subsequent validation identified dual inhibition of TLR4/NF-κB and JAK2/STAT3 pathways as key mechanism of MXSGT.
In conclusion, MXSGT serves a pivotal pharmacologically active component of LHQW for its gut-lung axis regulation, acting through gut microbiota homeostasis restoration, intestinal barrier integrity maintenance, and anti-inflammatory signaling pathways, providing compelling scientific evidence supporting LHQW's potential therapeutic application in managing diseases characterized by comorbid gut and lung inflammation.
连花清温(LHQW)是一种经临床验证的中草药,含有麻杏石肝汤(MXSGT)等,对各种呼吸系统疾病有广泛的疗效。然而,其对肠-肺轴的调节作用,特别是其MXSGT成分的贡献,仍未被探索。本研究采用公式分解的方法来解读这一机制。采用LHQW全方、LHQW不含MXSGT成分(LHQW-MXSGT)和MXSGT加药3种制剂,经肠-肺轴观察其对lps诱导的急性肺损伤和dss诱导的溃疡性结肠炎的治疗效果。采用H&E染色、组织化学染色、免疫荧光、ELISA、RT-qPCR、western blot检测病理改变、黏膜屏障完整性、炎性细胞浸润及促炎细胞因子水平。宏基因组分析(16S rDNA测序)研究了它们在肠道微生物群中的调节作用。通过网络药理学分析和细胞验证来探讨其潜在机制。我们的分析表明,LHQW和MXSGT,而不是LHQW-MXSGT,显著减轻了肺/肠道病理损伤,降低了促炎细胞因子(TNF-α, IL-1β, IL-6),恢复了肠道屏障蛋白(ZO-1, Occludin, MUC2)。LHQW/MXSGT抑制致病菌(大肠杆菌、沙门氏菌、肺炎克雷伯菌),同时富集嗜粘液阿克曼氏菌,与降低全身LPS相关。网络药理学和随后的验证发现TLR4/NF-κB和JAK2/STAT3通路的双重抑制是MXSGT的关键机制。综上所述,MXSGT是LHQW调节肠-肺轴的关键药理活性成分,通过恢复肠道微生物群稳态、维持肠道屏障完整性和抗炎信号通路起作用,为LHQW在治疗以肠道和肺部共病为特征的疾病方面的潜在治疗应用提供了令人信服的科学证据。
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引用次数: 0
Gene expression profiling of the carbon pathways and virulence factors of Candida albicans in different carbon sources 不同碳源白色念珠菌碳途径及毒力因子的基因表达谱分析。
IF 3.5 3区 医学 Q3 IMMUNOLOGY Pub Date : 2026-01-19 DOI: 10.1016/j.micpath.2026.108311
Bronwyn Lok , Nyok-Sean Lau , Noorizan Miswan , Alexander Chong Shu-Chien , Siti Nurfatimah Mohd Shahpudin , Hao-Ling Zhang , Doblin Sandai
The metabolic flexibility of Candida albicans enables the fungus to colonise and survive diverse niches in the host, contributing to its the pathogenicity in human infections. The effects of different carbon sources available to the fungus, such as glucose, fructose, and galactose, were investigated through growth studies, gene expression profiling, and real-time quantitative PCR (qPCR). The expression of certain carbon assimilation and antifungal drug resistance genes of the fungus was studied. The growth of the C. albicans cells were significantly slowed when galactose was used as their carbon source compared to the cells grown in glucose. Fluconazole was also found to have a stronger antifungal effect towards the cells grown in glucose and fructose compared to those grown in galactose. From the gene expression profiling, it was found that C. albicans undergoes a massive metabolic reorganization when grown on fructose and galactose compared to when it is grown in glucose, leading to changes in the expression of various carbon metabolic genes such as ICL1 (0.86 in fructose, −5.67 in galactose), MLS1 (1.08 in fructose), and MDH1 (0.93 in fructose, −1.14 in galactose). With a deeper understanding on how diet affects a Candida infection and the efficacy of the antifungal treatments against it, better treatment strategies could be developed to complement current antifungal medication. The usage of lower doses of antifungal drugs or the development of complementary antifungal strategies would also ameliorate the situation about the rise of antifungal drug resistance among pathogenic fungi.
白色念珠菌的代谢灵活性使真菌能够在宿主的不同生态位中定植和生存,有助于其在人类感染中的致病性。通过生长研究、基因表达谱和实时定量PCR (qPCR)研究了不同碳源(如葡萄糖、果糖和半乳糖)对真菌的影响。研究了该真菌某些碳同化和抗真菌耐药基因的表达。与在葡萄糖中生长的细胞相比,用半乳糖作为碳源时,白色念珠菌细胞的生长明显减慢。氟康唑还被发现对在葡萄糖和果糖中生长的细胞比在半乳糖中生长的细胞有更强的抗真菌作用。从基因表达谱中,我们发现白色念珠菌在果糖和半乳糖中生长时比在葡萄糖中生长时经历了大量的代谢重组,导致各种碳代谢基因的表达发生变化,如ICL1(果糖中为0.86,半乳糖中为-5.67)、MLS1(果糖中为1.08)和MDH1(果糖中为0.93,半乳糖中为-1.14)。随着对饮食如何影响念珠菌感染以及抗真菌治疗效果的深入了解,可以开发更好的治疗策略来补充当前的抗真菌药物。使用低剂量的抗真菌药物或开发互补的抗真菌策略也将改善致病真菌抗真菌耐药性上升的情况。
{"title":"Gene expression profiling of the carbon pathways and virulence factors of Candida albicans in different carbon sources","authors":"Bronwyn Lok ,&nbsp;Nyok-Sean Lau ,&nbsp;Noorizan Miswan ,&nbsp;Alexander Chong Shu-Chien ,&nbsp;Siti Nurfatimah Mohd Shahpudin ,&nbsp;Hao-Ling Zhang ,&nbsp;Doblin Sandai","doi":"10.1016/j.micpath.2026.108311","DOIUrl":"10.1016/j.micpath.2026.108311","url":null,"abstract":"<div><div>The metabolic flexibility of <em>Candida albicans</em> enables the fungus to colonise and survive diverse niches in the host, contributing to its the pathogenicity in human infections. The effects of different carbon sources available to the fungus, such as glucose, fructose, and galactose, were investigated through growth studies, gene expression profiling, and real-time quantitative PCR (qPCR). The expression of certain carbon assimilation and antifungal drug resistance genes of the fungus was studied. The growth of the <em>C. albicans</em> cells were significantly slowed when galactose was used as their carbon source compared to the cells grown in glucose. Fluconazole was also found to have a stronger antifungal effect towards the cells grown in glucose and fructose compared to those grown in galactose. From the gene expression profiling, it was found that <em>C. albicans</em> undergoes a massive metabolic reorganization when grown on fructose and galactose compared to when it is grown in glucose, leading to changes in the expression of various carbon metabolic genes such as <em>ICL1</em> (0.86 in fructose, −5.67 in galactose), <em>MLS1</em> (1.08 in fructose), and <em>MDH1</em> (0.93 in fructose, −1.14 in galactose). With a deeper understanding on how diet affects a <em>Candida</em> infection and the efficacy of the antifungal treatments against it, better treatment strategies could be developed to complement current antifungal medication. The usage of lower doses of antifungal drugs or the development of complementary antifungal strategies would also ameliorate the situation about the rise of antifungal drug resistance among pathogenic fungi.</div></div>","PeriodicalId":18599,"journal":{"name":"Microbial pathogenesis","volume":"212 ","pages":"Article 108311"},"PeriodicalIF":3.5,"publicationDate":"2026-01-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146018751","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Production of two Kımı pickles using the whey and vinegar as fermentation media and determination of bacterial and fungal microbiota, antibacterial and antibiofilm activities of Kımı pickles 以乳清和醋为发酵介质生产两种Kımı泡菜及Kımı泡菜细菌和真菌菌群、抗菌和抗膜活性的测定
IF 3.5 3区 医学 Q3 IMMUNOLOGY Pub Date : 2026-01-18 DOI: 10.1016/j.micpath.2026.108306
Damla Adsız , Nurcan Erbil , Ahmet İlçim
Plants can be used for different purposes, such as food, tea, and spices or for healing against various diseases. In this study, two different Kımı pickles, such as fermented with vinegar (SKT) and fermented with whey (PASKT), were produced. The antibacterial properties of both Kımı pickles were determined by MIC, MBC, and MTC and antibiofilm activity was determined by the crystal violet method. The bacterial microbiota of the Kımı pickle samples were determined by 16S metagenom analysis and the fungal microbiota by ITS metagenom analysis. As a result, the plant known as Kımı was systematically determined as Bunium cylindricum (Boiss. & Hohem.) Drude. PASKT exhibited the highest antibacterial activity against Bacillus licheniformis ATCC 14580, Klebsiella pneumoniae ATCC 33495, and Staphylococcus aureus ATCC 6538, while Staphylococcus aureus ATCC 6538 was the most sensitive to SKT. PASKT inhibited biofilm formation at a higher rate against Escherichia coli ATCC 8739 and Bacillus licheniformis ATCC 14580, while SKT exhibited higher antibiofilm activity against Klebsiella pneumoniae ATCC 33495 and Bacillus licheniformis ATCC 14580. The dominant bacterial genus in the PASKT was Bacteroides, whereas in the SKT it was Latilactobacillus. Dipodascus was the dominant genus in the PASKT fungal microbiota, while Penicillium was the dominant genus in the SKT fungal microbiota. In this study, whey was used as the fermentation medium for PASKT production. This has the potential to create an alternative for the utilization of whey, which is rich in nutrient content but is considered waste and can cause environmental pollution.
植物可以有不同的用途,如食物、茶和香料,或用于治疗各种疾病。在本研究中,生产了两种不同的Kımı泡菜,如醋发酵(SKT)和乳清发酵(PASKT)。采用MIC法、MBC法和MTC法测定Kımı酸菜的抗菌性能,并用结晶紫法测定抗菌膜活性。采用16S宏宏分析和ITS宏宏分析分别测定Kımı泡菜样品的细菌菌群和真菌菌群。结果,被称为Kımı的植物被系统地确定为白筒菇(Boiss。& Hohem)。柯克。PASKT对地衣芽孢杆菌ATCC 14580、肺炎克雷伯菌ATCC 33495和金黄色葡萄球菌ATCC 6538的抑菌活性最高,而金黄色葡萄球菌ATCC 6538对SKT最敏感。PASKT对大肠杆菌ATCC 8739和地衣芽孢杆菌ATCC 14580的生物膜形成抑制率较高,而SKT对肺炎克雷伯菌ATCC 33495和地衣芽孢杆菌ATCC 14580的生物膜形成抑制率较高。PASKT的优势菌属为拟杆菌属,SKT的优势菌属为乳酸杆菌属。在PASKT真菌菌群中,双足霉属为优势属,而在SKT真菌菌群中,青霉属为优势属。本研究以乳清为发酵培养基生产PASKT。这有可能为乳清的利用创造一种替代方案,乳清富含营养成分,但被认为是废物,并可能造成环境污染。
{"title":"Production of two Kımı pickles using the whey and vinegar as fermentation media and determination of bacterial and fungal microbiota, antibacterial and antibiofilm activities of Kımı pickles","authors":"Damla Adsız ,&nbsp;Nurcan Erbil ,&nbsp;Ahmet İlçim","doi":"10.1016/j.micpath.2026.108306","DOIUrl":"10.1016/j.micpath.2026.108306","url":null,"abstract":"<div><div>Plants can be used for different purposes, such as food, tea, and spices or for healing against various diseases. In this study, two different Kımı pickles, such as fermented with vinegar (SKT) and fermented with whey (PASKT), were produced. The antibacterial properties of both Kımı pickles were determined by MIC, MBC, and MTC and antibiofilm activity was determined by the crystal violet method. The bacterial microbiota of the Kımı pickle samples were determined by 16S metagenom analysis and the fungal microbiota by ITS metagenom analysis. As a result, the plant known as Kımı was systematically determined as <em>Bunium cylindricum</em> (Boiss. &amp; Hohem.) Drude. PASKT exhibited the highest antibacterial activity against <em>Bacillus licheniformis</em> ATCC 14580, <em>Klebsiella pneumoniae</em> ATCC 33495, and <em>Staphylococcus aureus</em> ATCC 6538, while <em>Staphylococcus aureus</em> ATCC 6538 was the most sensitive to SKT. PASKT inhibited biofilm formation at a higher rate against <em>Escherichia coli</em> ATCC 8739 and <em>Bacillus licheniformis</em> ATCC 14580, while SKT exhibited higher antibiofilm activity against <em>Klebsiella pneumoniae</em> ATCC 33495 and <em>Bacillus licheniformis</em> ATCC 14580. The dominant bacterial genus in the PASKT was <em>Bacteroides</em>, whereas in the SKT it was <em>Latilactobacillus</em>. <em>Dipodascus</em> was the dominant genus in the PASKT fungal microbiota, while <em>Penicillium</em> was the dominant genus in the SKT fungal microbiota. In this study, whey was used as the fermentation medium for PASKT production. This has the potential to create an alternative for the utilization of whey, which is rich in nutrient content but is considered waste and can cause environmental pollution.</div></div>","PeriodicalId":18599,"journal":{"name":"Microbial pathogenesis","volume":"212 ","pages":"Article 108306"},"PeriodicalIF":3.5,"publicationDate":"2026-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146011280","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Type II and type VII Toxin-antitoxin systems: an overview and their roles in bacterial biofilm development II型和VII型毒素-抗毒素系统:综述及其在细菌生物膜发育中的作用。
IF 3.5 3区 医学 Q3 IMMUNOLOGY Pub Date : 2026-01-16 DOI: 10.1016/j.micpath.2026.108304
Yujie Shen , Li Kang , Ailing Xu, Guangmin Tu, Shuyan Wu
Toxin-antitoxin (TA) systems are distinct genetic modules, typically consisting of adjacent toxin and antitoxin genes, and are extensively prevalent in various bacterial species. These genetic elements play key roles in shaping bacterial physiology and pathogenicity, specifically in the regulation of growth dynamics, the mediation of stress responses, and the modulation of bacterial persistence and biofilm formation. TA systems are currently classified into eight types, type II and type VII stand out as pivotal modules for bacterial survival and have drawn much research interest. This review systematically dissects the multifaceted impacts of representative type II and type VII TA systems on the initiation, maturation, and dispersal stages of bacterial biofilm development, while comprehensively unraveling the underlying molecular mechanisms.
毒素-抗毒素(TA)系统是不同的遗传模块,通常由相邻的毒素和抗毒素基因组成,广泛存在于各种细菌物种中。这些遗传因子在塑造细菌生理和致病性方面发挥着关键作用,特别是在调节生长动力学、介导应激反应、调节细菌持久性和生物膜形成方面。TA系统目前分为8种类型,II型和VII型作为细菌生存的关键模块,引起了很多研究兴趣。本文系统剖析了具有代表性的II型和VII型TA系统对细菌生物膜发育的起始、成熟和扩散阶段的多方面影响,同时全面揭示了潜在的分子机制。
{"title":"Type II and type VII Toxin-antitoxin systems: an overview and their roles in bacterial biofilm development","authors":"Yujie Shen ,&nbsp;Li Kang ,&nbsp;Ailing Xu,&nbsp;Guangmin Tu,&nbsp;Shuyan Wu","doi":"10.1016/j.micpath.2026.108304","DOIUrl":"10.1016/j.micpath.2026.108304","url":null,"abstract":"<div><div>Toxin-antitoxin (TA) systems are distinct genetic modules, typically consisting of adjacent toxin and antitoxin genes, and are extensively prevalent in various bacterial species. These genetic elements play key roles in shaping bacterial physiology and pathogenicity, specifically in the regulation of growth dynamics, the mediation of stress responses, and the modulation of bacterial persistence and biofilm formation. TA systems are currently classified into eight types, type II and type VII stand out as pivotal modules for bacterial survival and have drawn much research interest. This review systematically dissects the multifaceted impacts of representative type II and type VII TA systems on the initiation, maturation, and dispersal stages of bacterial biofilm development, while comprehensively unraveling the underlying molecular mechanisms.</div></div>","PeriodicalId":18599,"journal":{"name":"Microbial pathogenesis","volume":"212 ","pages":"Article 108304"},"PeriodicalIF":3.5,"publicationDate":"2026-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145998519","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Post-pandemic molecular epidemiology of β-lactam resistance and biofilm formation in multidrug-resistant Acinetobacter baumannii from a Brazilian tertiary hospital 巴西某三级医院耐多药鲍曼不动杆菌β-内酰胺耐药性和生物膜形成的大流行后分子流行病学研究
IF 3.5 3区 医学 Q3 IMMUNOLOGY Pub Date : 2026-01-16 DOI: 10.1016/j.micpath.2026.108307
Igor Vasconcelos Rocha , Lamartine Rodrigues Martins , Maria Izabely Silva Pimentel , Renata Pessôa Germano Mendes , Ana Catarina de Souza Lopes

Background

Multidrug-resistant (MDR) Acinetobacter baumannii has emerged as a critical post-pandemic pathogen, combining antimicrobial resistance with biofilm formation, severely complicating infection control. We aimed to characterize the genetic mechanisms of β-lactams resistance and biofilm-forming capacity of MDR A. baumannii isolates from a Brazilian tertiary hospital, in the post-COVID-19 pandemic period.

Methods

A. baumannii isolates were collected from various clinical specimens between 2023/2024. Species identification was performed using the Phoenix BD® system. Antimicrobial susceptibility testing was performed by broth microdilution. β-lactamase genes were investigated by PCR, and biofilm formation was quantified using crystal violet assay. Growth kinetics were analyzed spectrophotometrically.

Results

Among 78 isolates, 98.7 % exhibited MDR profiles while remaining susceptible to colistin. Strong biofilm production occurred in 71.8 % of isolates, particularly from rectal swabs. Dominant resistance genes included blaOXA-23 (66.7 %), blaOXA-24 (19.2 %), and blaOXA-143 (12.9 %), with blaNDM-1 in 3.9 %. Isaba1 was associated with blaOXA-23 (44.2 %) and blaADC (92.3 %). The bap gene was detected in 28.2 % of the isolates, while blaKPC/GES/IMP/SPM/PER-1 were absent. Biofilm-forming groups displayed distinct growth patterns.

Conclusion

Our study demonstrates that most A. baumannii isolates exhibit MDR profiles and robust biofilm formation. The widespread presence of β-lactamase genes and biofilm-producing strains underscores the necessity for enhanced molecular surveillance and biofilm-focused infection control measures in critical care units. These findings provide valuable insights into the genetic mechanisms driving resistance and biofilm formation in post-pandemic clinical settings. To mitigate the persistence and spread of high-risk MDR clones, hospitals should integrate genetic resistance profiling and biofilm-targeted strategies into infection control protocols.
背景:鲍曼不动杆菌多重耐药(MDR)已成为一种重要的大流行后病原体,它结合了抗微生物药物耐药性和生物膜的形成,严重复杂化了感染控制。我们的目的是表征在covid -19大流行后,巴西一家三级医院的耐多药鲍曼杆菌分离株β-内酰胺耐药性和生物膜形成能力的遗传机制。方法:从2023/2024年各临床标本中采集鲍曼不动杆菌分离株。使用Phoenix BD®系统进行物种鉴定。采用微量肉汤稀释法进行药敏试验。PCR检测β-内酰胺酶基因,结晶紫法测定生物膜形成。用分光光度法分析了生长动力学。结果:78株分离株中,98.7%表现出耐多药谱,同时对粘菌素敏感。71.8%的分离株产生了很强的生物膜,尤其是直肠拭子。优势耐药基因包括blaOXA-23(66.7%)、blaOXA-24(19.2%)和blaOXA-143 (12.9%), blaNDM-1占3.9%。Isaba1与blaOXA-23(44.2%)和blaADC(92.3%)相关。28.2%的分离株中检出bap基因,而blaKPC/GES/IMP/SPM/PER-1基因缺失。生物成膜组表现出不同的生长模式。结论:我们的研究表明,大多数鲍曼不动杆菌分离株具有耐多药谱和强大的生物膜形成。β-内酰胺酶基因和产生生物膜的菌株的广泛存在强调了在重症监护病房加强分子监测和以生物膜为重点的感染控制措施的必要性。这些发现为大流行后临床环境中驱动耐药性和生物膜形成的遗传机制提供了有价值的见解。为了减轻高风险耐多药克隆的持续存在和传播,医院应将遗传抗性分析和生物膜靶向策略纳入感染控制方案。
{"title":"Post-pandemic molecular epidemiology of β-lactam resistance and biofilm formation in multidrug-resistant Acinetobacter baumannii from a Brazilian tertiary hospital","authors":"Igor Vasconcelos Rocha ,&nbsp;Lamartine Rodrigues Martins ,&nbsp;Maria Izabely Silva Pimentel ,&nbsp;Renata Pessôa Germano Mendes ,&nbsp;Ana Catarina de Souza Lopes","doi":"10.1016/j.micpath.2026.108307","DOIUrl":"10.1016/j.micpath.2026.108307","url":null,"abstract":"<div><h3>Background</h3><div>Multidrug-resistant (MDR) <em>Acinetobacter baumannii</em> has emerged as a critical post-pandemic pathogen, combining antimicrobial resistance with biofilm formation, severely complicating infection control. We aimed to characterize the genetic mechanisms of β-lactams resistance and biofilm-forming capacity of MDR <em>A. baumannii</em> isolates from a Brazilian tertiary hospital, in the post-COVID-19 pandemic period.</div></div><div><h3>Methods</h3><div><em>A. baumannii</em> isolates were collected from various clinical specimens between 2023/2024. Species identification was performed using the Phoenix BD® system. Antimicrobial susceptibility testing was performed by broth microdilution. β-lactamase genes were investigated by PCR, and biofilm formation was quantified using crystal violet assay. Growth kinetics were analyzed spectrophotometrically.</div></div><div><h3>Results</h3><div>Among 78 isolates, 98.7 % exhibited MDR profiles while remaining susceptible to colistin. Strong biofilm production occurred in 71.8 % of isolates, particularly from rectal swabs. Dominant resistance genes included <em>bla</em><sub>OXA-23</sub> (66.7 %), <em>bla</em><sub>OXA-24</sub> (19.2 %), and <em>bla</em><sub>OXA-143</sub> (12.9 %), with <em>bla</em><sub>NDM-1</sub> in 3.9 %. <em>Isaba1</em> was associated with <em>bla</em><sub>OXA-23</sub> (44.2 %) and <em>bla</em><sub>ADC</sub> (92.3 %). The <em>bap</em> gene was detected in 28.2 % of the isolates, while <em>bla</em><sub>KPC/GES/IMP/SPM/PER-1</sub> were absent. Biofilm-forming groups displayed distinct growth patterns.</div></div><div><h3>Conclusion</h3><div>Our study demonstrates that most <em>A. baumannii</em> isolates exhibit MDR profiles and robust biofilm formation. The widespread presence of β-lactamase genes and biofilm-producing strains underscores the necessity for enhanced molecular surveillance and biofilm-focused infection control measures in critical care units. These findings provide valuable insights into the genetic mechanisms driving resistance and biofilm formation in post-pandemic clinical settings. To mitigate the persistence and spread of high-risk MDR clones, hospitals should integrate genetic resistance profiling and biofilm-targeted strategies into infection control protocols.</div></div>","PeriodicalId":18599,"journal":{"name":"Microbial pathogenesis","volume":"212 ","pages":"Article 108307"},"PeriodicalIF":3.5,"publicationDate":"2026-01-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145998574","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Pairing antibiotics with phages: A new strategy to tackle biofilms of drug-resistant Acinetobacter baumannii—insights from in vitro and in vivo studies 将抗生素与噬菌体配对:一种处理耐药鲍曼不动杆菌生物膜的新策略——来自体外和体内研究的见解。
IF 3.5 3区 医学 Q3 IMMUNOLOGY Pub Date : 2026-01-15 DOI: 10.1016/j.micpath.2026.108290
Majid Taati Moghadam , Mahsa Ziasistani , Faeze Mahdiun , Mohammad Hossein Sobhanipoor , Massoumeh Ghasemi , Elham Isaei , Mahsa Kiaei
Emerging multidrug-resistant (MDR) and extensively drug-resistant (XDR) Acinetobacter baumanii is a serious challenge in hospital settings. Biofilm formation is one of these bacteria's most crucial mechanisms of antibiotic resistance. Given the ineffectiveness of common antibiotics against MDR, XDR, and biofilm-forming A. baumannii, the healthcare system must use new strategies to combat A. baumannii biofilm. This study aimed to provide an overview of the in vitro, in vivo, and ex vivo combination therapy of phages and antibiotics for combating A. baumanii biofilms. Most studies suggest that pairing antibiotics with phages could help break down A. baumannii biofilms and treat infections caused by these hard-to-beat superbugs, especially when using cocktail phages and colistin to inhibit biofilm formation or eradicate biofilms. Many limitations of phage therapy can be overcome by combining phage therapy with antibiotics. Additionally, protein-derived phages have been proposed as a promising alternative or complementary approach to conventional therapies, demonstrating significant antibacterial activity. When used in combination with antibiotics, they may enhance treatment efficacy by reducing the spread of antibiotic-resistant A. baumannii and effectively eliminating their biofilms. Combining antibiotics with phage therapy may offer an effective strategy to disrupt A. baumannii biofilms in laboratory settings and improve treatment outcomes for patients with drug-resistant infections.
新出现的多药耐药(MDR)和广泛耐药(XDR)鲍曼不动杆菌是医院环境中的一个严重挑战。生物膜的形成是这些细菌产生抗生素耐药性的最重要的机制之一。鉴于常见抗生素对耐多药、广泛耐药和形成鲍曼不动杆菌生物膜的无效,卫生保健系统必须采用新的策略来对抗鲍曼不动杆菌生物膜。本研究旨在综述噬菌体与抗生素在体外、体内和离体联合治疗鲍曼不动杆菌生物膜的研究进展。大多数研究表明,将抗生素与噬菌体配对可以帮助分解鲍曼不对称芽孢杆菌生物膜,治疗由这些难以击败的超级细菌引起的感染,特别是当使用鸡尾酒噬菌体和粘菌素来抑制生物膜的形成或根除生物膜时。噬菌体治疗的许多局限性可以通过噬菌体治疗与抗生素的结合来克服。此外,蛋白质来源的噬菌体已被提出作为一种有希望的替代或补充方法,以替代传统的治疗方法,显示出显著的抗菌活性。当与抗生素联合使用时,它们可以通过减少耐抗生素鲍曼不动杆菌的传播并有效消除其生物膜来提高治疗效果。将抗生素与噬菌体治疗相结合可能是在实验室环境中破坏鲍曼不动杆菌生物膜的有效策略,并改善耐药感染患者的治疗效果。
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引用次数: 0
Baicalin inhibits macrophage glycolysis and succinate-driven HIF-1α signaling by targeting PKM2 to alleviate RSV-induced inflammation. 黄芩苷通过靶向PKM2抑制巨噬细胞糖酵解和琥珀酸驱动的HIF-1α信号传导,减轻rsv诱导的炎症。
IF 3.5 3区 医学 Q3 IMMUNOLOGY Pub Date : 2026-01-14 DOI: 10.1016/j.micpath.2026.108291
He Yang, Yaqian Gu, Yingying Dong, Huan Sun, Shuangshuang Liufu, Haiyan Xu, Ke Du, Linxiu Peng, Weichen Xu, Lili Lin, Tong Xie, Jinjun Shan, Xia Zhao

Respiratory syncytial virus (RSV) infection triggers excessive inflammation, contributing to disease severity. Baicalin exerts therapeutic effects against RSV infection by inhibiting viral replication and alleviating inflammation. However, the mechanisms underlying its immunoregulatory during RSV infection remain unclear. Here we found that baicalin alleviated RSV induced inflammation by regulating the macrophage immunometabolism. To investigate metabolic modulation, metabolomic analysis was performed, revealing an obvious reversal in the metabolic profile by baicalin administration. Further metabolic flux analysis using isotope tracers demonstrated that baicalin suppressed the accumulation of lactate and succinate induced by RSV infection. Mechanistically, baicalin inhibited glycolytic metabolism and succinate driven hypoxia-inducible factor 1α (HIF-1α) signaling during RSV infection, thereby suppressing NLR family, pyrin domain containing protein 3 (NLRP3) activation and reducing IL-1β release. The effects were validated in vitro using a glycolysis activator to confirm the suppression of glycolytic metabolism, and through co-treatment with dimethylsuccinate and RSV to verify the involvement of HIF-1α-mediated hypoxia pathway. Final targeting for baicalin at pyruvate kinase M2 (PKM2) was confirmed via molecular docking and limited proteolysis-coupled mass spectrometry. Taken together, these data elucidate a mechanism of baicalin through regulatory immunometabolism of macrophage to alleviate RSV-induced inflammation, which have critical roles in the treatment of RSV infection.

呼吸道合胞病毒(RSV)感染引发过度炎症,导致疾病严重。黄芩苷对RSV感染具有抑制病毒复制、减轻炎症的治疗作用。然而,其在RSV感染期间的免疫调节机制尚不清楚。本研究发现黄芩苷通过调节巨噬细胞免疫代谢来减轻RSV诱导的炎症。为了研究代谢调节,进行了代谢组学分析,揭示了黄芩苷对代谢谱的明显逆转。同位素示踪的代谢通量分析表明,黄芩苷抑制了RSV感染诱导的乳酸和琥珀酸盐的积累。机制上,黄芩苷抑制RSV感染过程中糖酵解代谢和琥珀酸驱动的缺氧诱导因子1α (HIF-1α)信号,从而抑制NLR家族pyrin结构域蛋白3 (NLRP3)的激活,减少IL-1β的释放。通过体外糖酵解激活剂验证其对糖酵解代谢的抑制作用,并通过与二甲基琥珀酸盐和RSV共处理验证其参与hif -1α-介导的缺氧途径。通过分子对接和有限蛋白水解耦合质谱法确定黄芩苷最终靶向丙酮酸激酶M2 (PKM2)。综上所述,这些数据阐明了黄芩苷通过调节巨噬细胞的免疫代谢来减轻RSV诱导的炎症的机制,这在RSV感染的治疗中具有重要作用。
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引用次数: 0
Engineering a hybrid chitinase-sonorensin fusion protein for enhanced antibacterial and antifungal activity 构建几丁质酶-索乳酸酶融合蛋白增强抗菌和抗真菌活性。
IF 3.5 3区 医学 Q3 IMMUNOLOGY Pub Date : 2026-01-14 DOI: 10.1016/j.micpath.2026.108295
Nahla Alsayd Bouqellah
The main objective of the study was to attain improved effectiveness against various bacterial and fungal infections, tackling the widespread problem of multidrug resistance. The study presents the development and evaluation of a hybrid antimicrobial protein created by combining chitinase and sonorensin (HyChiSono). The hybrid protein HyChiSono, a 49.3 kDa chitinase–sonorensin fusion protein, was engineered, expressed in E. coli BL21(DE3), and purified to > 95 % homogeneity. Independent folding of each domain linked by a flexible (GGGGS) spacer was revealed by AlphaFold modelling; a highly ordered α/β structure was confirmed by far-UV CD. HyChiSono exhibited bactericidal activity, as assessed through well diffusion assays, membrane damage assays, and transmission electron microscopy (TEM). Quantitatively, HyChiSono demonstrated robust antibacterial activity, with recorded zones of inhibition (ZOIs) against Gram-positive Staphylococcus aureus (MIC 8 μg/mL; ZOI 17.0 ± 0.3 mm), Listeria monocytogenes (MIC 16 μg/mL; ZOI 19.3 ± 0.5 mm), and Gram-negative Escherichia coli (MIC 4 μg/mL; ZOI 18.5 ± 0.5 mm) and Salmonella enterica serovar Typhi (MIC 2 μg/mL; ZOI 18.0 ± 0.7 mm), outperforming native sonorensin by a factor of 2–4. SYTOX-green uptake and TEM demonstrated rapid membrane permeabilization and peptidoglycan thinning in both cell envelopes. Cell-wall targeting was rationalized by docking scores of −6.7 and −6.4 kcal/mol against N-acetyl-glucosamine and chitin. In addition to its antibacterial properties, the antifungal assays of hybrid protein exhibited 64.7 % growth inhibition of Fusarium oxysporum and 45.9 % against Alternaria solani, superior to standalone chitinase (41 % and 37 %, respectively). The bifunctional HyChiSono construct is offered as a single-molecule platform to combat multidrug-resistant bacteria and phytopathogenic fungi.
该研究的主要目的是提高对各种细菌和真菌感染的有效性,解决广泛存在的多药耐药问题。本研究介绍了几丁质酶与sonorensin (HyChiSono)结合制备的杂交抗菌蛋白的开发与评价。以49.3 kDa的几丁质酶-sonorensin融合蛋白HyChiSono为载体,在大肠杆菌BL21(DE3)中表达,纯化后同源性达到95%。通过AlphaFold建模,揭示了由柔性(GGGGS)间隔连接的每个区域的独立折叠;远紫外CD证实了其高度有序的α/β结构。通过孔扩散实验、膜损伤实验和透射电镜(TEM)评估,HyChiSono具有杀菌活性。从数量上看,HyChiSono显示出强大的抗菌活性,对革兰氏阳性金黄色葡萄球菌(MIC 8 μg mL-1; ZOI 17.0±0.3 mm)、单核增生李斯特菌(MIC 16 μg mL-1; ZOI 19.3±0.5 mm)、革兰氏阴性大肠杆菌(MIC 4 μg mL-1; ZOI 18.5±0.5 mm)和伤寒沙门氏菌(MIC 2 μg mL-1; ZOI 18.0±0.7 mm)的抑制区(ZOIs)比天然索诺菌素高出2到4倍。SYTOX-green摄取和透射电镜显示两种细胞包膜的快速膜渗透和肽聚糖变薄。细胞壁靶向通过-6.7和-6.4 kcal mol-1对n -乙酰氨基葡萄糖和几丁质的对接评分来合理化。杂种蛋白对尖孢镰刀菌的抑菌效果为64.7%,对茄疫病菌的抑菌效果为45.9%,优于单独的几丁质酶(分别为41%和37%)。双功能HyChiSono结构作为单分子平台提供对抗多药耐药细菌和植物病原真菌。
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引用次数: 0
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Microbial pathogenesis
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