Pub Date : 2024-11-20DOI: 10.1038/s41586-024-08222-1
Francesco Beghini, Jackson Pullman, Marcus Alexander, Shivkumar Vishnempet Shridhar, Drew Prinster, Adarsh Singh, Rigoberto Matute Juárez, Edoardo M. Airoldi, Ilana L. Brito, Nicholas A. Christakis
When humans assemble into face-to-face social networks, they create an extended social environment that permits exposure to the microbiome of others, thereby shaping the composition and diversity of the microbiome at individual and population levels1,2,3,4,5,6. Here we use comprehensive social network mapping and detailed microbiome sequencing data in 1,787 adults within 18 isolated villages in Honduras7 to investigate the relationship between network structure and gut microbiome composition. Using both species-level and strain-level data, we show that microbial sharing occurs between many relationship types, notably including non-familial and non-household connections. Furthermore, strain-sharing extends to second-degree social connections, suggesting the relevance of a person’s broader network. We also observe that socially central people are more microbially similar to the overall village than socially peripheral people. Among 301 people whose microbiome was re-measured 2 years later, we observe greater convergence in strain-sharing in connected versus otherwise similar unconnected co-villagers. Clusters of species and strains occur within clusters of people in village social networks, meaning that social networks provide the social niches within which microbiome biology and phenotypic impact are manifested.
{"title":"Gut microbiome strain-sharing within isolated village social networks","authors":"Francesco Beghini, Jackson Pullman, Marcus Alexander, Shivkumar Vishnempet Shridhar, Drew Prinster, Adarsh Singh, Rigoberto Matute Juárez, Edoardo M. Airoldi, Ilana L. Brito, Nicholas A. Christakis","doi":"10.1038/s41586-024-08222-1","DOIUrl":"https://doi.org/10.1038/s41586-024-08222-1","url":null,"abstract":"<p>When humans assemble into face-to-face social networks, they create an extended social environment that permits exposure to the microbiome of others, thereby shaping the composition and diversity of the microbiome at individual and population levels<sup>1,2,3,4,5,6</sup>. Here we use comprehensive social network mapping and detailed microbiome sequencing data in 1,787 adults within 18 isolated villages in Honduras<sup>7</sup> to investigate the relationship between network structure and gut microbiome composition. Using both species-level and strain-level data, we show that microbial sharing occurs between many relationship types, notably including non-familial and non-household connections. Furthermore, strain-sharing extends to second-degree social connections, suggesting the relevance of a person’s broader network. We also observe that socially central people are more microbially similar to the overall village than socially peripheral people. Among 301 people whose microbiome was re-measured 2 years later, we observe greater convergence in strain-sharing in connected versus otherwise similar unconnected co-villagers. Clusters of species and strains occur within clusters of people in village social networks, meaning that social networks provide the social niches within which microbiome biology and phenotypic impact are manifested.</p>","PeriodicalId":18787,"journal":{"name":"Nature","volume":"251 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142673853","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-20DOI: 10.1038/d41586-024-03741-3
The discovery of a young, Jupiter-sized planet with a short orbital period provides useful data for studying planet formation.
一颗年轻、木星大小、轨道周期短的行星的发现为研究行星的形成提供了有用的数据。
{"title":"Newborn planet found in a warped system","authors":"","doi":"10.1038/d41586-024-03741-3","DOIUrl":"https://doi.org/10.1038/d41586-024-03741-3","url":null,"abstract":"The discovery of a young, Jupiter-sized planet with a short orbital period provides useful data for studying planet formation.","PeriodicalId":18787,"journal":{"name":"Nature","volume":"23 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142673870","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-20DOI: 10.1038/s41586-024-08172-8
Zhisong He, Leander Dony, Jonas Simon Fleck, Artur Szałata, Katelyn X. Li, Irena Slišković, Hsiu-Chuan Lin, Malgorzata Santel, Alexander Atamian, Giorgia Quadrato, Jieran Sun, Sergiu P. Pașca, J. Gray Camp, Fabian J. Theis, Barbara Treutlein
Human neural organoids, generated from pluripotent stem cells in vitro, are useful tools to study human brain development, evolution and disease. However, it is unclear which parts of the human brain are covered by existing protocols, and it has been difficult to quantitatively assess organoid variation and fidelity. Here we integrate 36 single-cell transcriptomic datasets spanning 26 protocols into one integrated human neural organoid cell atlas totalling more than 1.7 million cells1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26. Mapping to developing human brain references27,28,29,30 shows primary cell types and states that have been generated in vitro, and estimates transcriptomic similarity between primary and organoid counterparts across protocols. We provide a programmatic interface to browse the atlas and query new datasets, and showcase the power of the atlas to annotate organoid cell types and evaluate new organoid protocols. Finally, we show that the atlas can be used as a diverse control cohort to annotate and compare organoid models of neural disease, identifying genes and pathways that may underlie pathological mechanisms with the neural models. The human neural organoid cell atlas will be useful to assess organoid fidelity, characterize perturbed and diseased states and facilitate protocol development.
{"title":"An integrated transcriptomic cell atlas of human neural organoids","authors":"Zhisong He, Leander Dony, Jonas Simon Fleck, Artur Szałata, Katelyn X. Li, Irena Slišković, Hsiu-Chuan Lin, Malgorzata Santel, Alexander Atamian, Giorgia Quadrato, Jieran Sun, Sergiu P. Pașca, J. Gray Camp, Fabian J. Theis, Barbara Treutlein","doi":"10.1038/s41586-024-08172-8","DOIUrl":"https://doi.org/10.1038/s41586-024-08172-8","url":null,"abstract":"<p>Human neural organoids, generated from pluripotent stem cells in vitro, are useful tools to study human brain development, evolution and disease. However, it is unclear which parts of the human brain are covered by existing protocols, and it has been difficult to quantitatively assess organoid variation and fidelity. Here we integrate 36 single-cell transcriptomic datasets spanning 26 protocols into one integrated human neural organoid cell atlas totalling more than 1.7 million cells<sup>1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26</sup>. Mapping to developing human brain references<sup>27,28,29,30</sup> shows primary cell types and states that have been generated in vitro, and estimates transcriptomic similarity between primary and organoid counterparts across protocols. We provide a programmatic interface to browse the atlas and query new datasets, and showcase the power of the atlas to annotate organoid cell types and evaluate new organoid protocols. Finally, we show that the atlas can be used as a diverse control cohort to annotate and compare organoid models of neural disease, identifying genes and pathways that may underlie pathological mechanisms with the neural models. The human neural organoid cell atlas will be useful to assess organoid fidelity, characterize perturbed and diseased states and facilitate protocol development.</p>","PeriodicalId":18787,"journal":{"name":"Nature","volume":"99 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142673962","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-20DOI: 10.1038/d41586-024-03817-0
Bites from insects infected with modified malaria parasites boosted immunity and stopped people from contracting the disease.
被感染了改良疟原虫的昆虫叮咬后,人们的免疫力会得到提高,从而避免感染这种疾病。
{"title":"This malaria vaccine is delivered by a mosquito bite","authors":"","doi":"10.1038/d41586-024-03817-0","DOIUrl":"https://doi.org/10.1038/d41586-024-03817-0","url":null,"abstract":"Bites from insects infected with modified malaria parasites boosted immunity and stopped people from contracting the disease.","PeriodicalId":18787,"journal":{"name":"Nature","volume":"73 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142678299","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Green indium phosphide (InP)-based quantum dot light-emitting diodes (QD-LEDs) still suffer from low efficiency and short operational lifetime, posing a critical challenge to fully cadmium-free QD-LED displays and lighting1,2,3. Unfortunately, the factors that underlie these limitations remain unclear and, therefore, no clear device-engineering guidelines are available. Here, by using electrically excited transient absorption spectroscopy, we find that the low efficiency of state-of-the-art green cadmium-free QD-LEDs (which ubiquitously adopt the InP–ZnSeS–ZnS core–shell–shell structure) originates from the ZnSeS interlayer because it imposes a high injection barrier that limits the electron concentration and trap saturation. We demonstrate, both experimentally and theoretically, that replacing the currently widely used ZnSeS interlayer with a thickened ZnSe interlayer enables improved electron injection and depressed leakage simultaneously, allowing to achieve a peak external quantum efficiency of 26.68% and T95 lifetime (time for the luminance to drop to 95% of the initial value) of 1,241 h at an initial brightness of 1,000 cd m–2 in green InP-based QD-LEDs emitting at 543 nm—exceeding the previous best values by a factor of 1.6 and 165, respectively3,4.
{"title":"Efficient green InP-based QD-LED by controlling electron injection and leakage","authors":"Yangyang Bian, Xiaohan Yan, Fei Chen, Qian Li, Bo Li, Wenjun Hou, Zizhe Lu, Shuaibing Wang, Han Zhang, Wenjing Zhang, Dandan Zhang, Aiwei Tang, Fengjia Fan, Huaibin Shen","doi":"10.1038/s41586-024-08197-z","DOIUrl":"https://doi.org/10.1038/s41586-024-08197-z","url":null,"abstract":"<p>Green indium phosphide (InP)-based quantum dot light-emitting diodes (QD-LEDs) still suffer from low efficiency and short operational lifetime, posing a critical challenge to fully cadmium-free QD-LED displays and lighting<sup>1,2,3</sup>. Unfortunately, the factors that underlie these limitations remain unclear and, therefore, no clear device-engineering guidelines are available. Here, by using electrically excited transient absorption spectroscopy, we find that the low efficiency of state-of-the-art green cadmium-free QD-LEDs (which ubiquitously adopt the InP–ZnSeS–ZnS core–shell–shell structure) originates from the ZnSeS interlayer because it imposes a high injection barrier that limits the electron concentration and trap saturation. We demonstrate, both experimentally and theoretically, that replacing the currently widely used ZnSeS interlayer with a thickened ZnSe interlayer enables improved electron injection and depressed leakage simultaneously, allowing to achieve a peak external quantum efficiency of 26.68% and <i>T</i><sub>95</sub> lifetime (time for the luminance to drop to 95% of the initial value) of 1,241 h at an initial brightness of 1,000 cd m<sup>–2</sup> in green InP-based QD-LEDs emitting at 543 nm—exceeding the previous best values by a factor of 1.6 and 165, respectively<sup>3,4</sup>.</p>","PeriodicalId":18787,"journal":{"name":"Nature","volume":"51 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142678303","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-20DOI: 10.1038/d41586-024-03804-5
Analysis of nearly 2,000 people living in remote villages in Honduras reveals who’s spreading gut microorganisms to whom.
对生活在洪都拉斯偏远村庄的近 2000 人进行的分析揭示了谁在向谁传播肠道微生物。
{"title":"Your friends shape your microbiome — and so do their friends","authors":"","doi":"10.1038/d41586-024-03804-5","DOIUrl":"https://doi.org/10.1038/d41586-024-03804-5","url":null,"abstract":"Analysis of nearly 2,000 people living in remote villages in Honduras reveals who’s spreading gut microorganisms to whom.","PeriodicalId":18787,"journal":{"name":"Nature","volume":"57 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142678359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-20DOI: 10.1038/s41586-024-08082-9
M. O. Cuthbert, T. Gleeson, M. F. P. Bierkens, G. Ferguson, R. G. Taylor
arising from: J. Rockström et al. Nature https://doi.org/10.1038/s41586-023-06083-8 (2023).
源于J. Rockström et al.自然 https://doi.org/10.1038/s41586-023-06083-8 (2023)。
{"title":"Concerns regarding proposed groundwater Earth system boundary","authors":"M. O. Cuthbert, T. Gleeson, M. F. P. Bierkens, G. Ferguson, R. G. Taylor","doi":"10.1038/s41586-024-08082-9","DOIUrl":"https://doi.org/10.1038/s41586-024-08082-9","url":null,"abstract":"<p><b><span>arising from</span></b>: J. Rockström et al. <i>Nature</i> https://doi.org/10.1038/s41586-023-06083-8 (2023).</p>","PeriodicalId":18787,"journal":{"name":"Nature","volume":"231 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142678366","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-20DOI: 10.1038/s41586-024-08230-1
Sebastian Sippel, Elizabeth C. Kent, Nicolai Meinshausen, Duo Chan, Christopher Kadow, Raphael Neukom, Erich M. Fischer, Vincent Humphrey, Robert Rohde, Iris de Vries, Reto Knutti
The observed temperature record, which combines sea surface temperatures with near-surface air temperatures over land, is crucial for understanding climate variability and change1,2,3,4. However, early records of global mean surface temperature are uncertain owing to changes in measurement technology and practice, partial documentation5,6,7,8, and incomplete spatial coverage9. Here we show that existing estimates of ocean temperatures in the early twentieth century (1900–1930) are too cold, based on independent statistical reconstructions of the global mean surface temperature from either ocean or land data. The ocean-based reconstruction is on average about 0.26 °C colder than the land-based one, despite very high agreement in all other periods. The ocean cold anomaly is unforced, and internal variability in climate models cannot explain the observed land–ocean discrepancy. Several lines of evidence based on attribution, timescale analysis, coastal grid cells and palaeoclimate data support the argument of a substantial cold bias in the observed global sea-surface-temperature record in the early twentieth century. Although estimates of global warming since the mid-nineteenth century are not affected, correcting the ocean cold bias would result in a more modest early-twentieth-century warming trend10, a lower estimate of decadal-scale variability inferred from the instrumental record3, and better agreement between simulated and observed warming than existing datasets suggest2.
{"title":"Early-twentieth-century cold bias in ocean surface temperature observations","authors":"Sebastian Sippel, Elizabeth C. Kent, Nicolai Meinshausen, Duo Chan, Christopher Kadow, Raphael Neukom, Erich M. Fischer, Vincent Humphrey, Robert Rohde, Iris de Vries, Reto Knutti","doi":"10.1038/s41586-024-08230-1","DOIUrl":"https://doi.org/10.1038/s41586-024-08230-1","url":null,"abstract":"<p>The observed temperature record, which combines sea surface temperatures with near-surface air temperatures over land, is crucial for understanding climate variability and change<sup>1,2,3,4</sup>. However, early records of global mean surface temperature are uncertain owing to changes in measurement technology and practice, partial documentation<sup>5,6,7,8</sup>, and incomplete spatial coverage<sup>9</sup>. Here we show that existing estimates of ocean temperatures in the early twentieth century (1900–1930) are too cold, based on independent statistical reconstructions of the global mean surface temperature from either ocean or land data. The ocean-based reconstruction is on average about 0.26 °C colder than the land-based one, despite very high agreement in all other periods. The ocean cold anomaly is unforced, and internal variability in climate models cannot explain the observed land–ocean discrepancy. Several lines of evidence based on attribution, timescale analysis, coastal grid cells and palaeoclimate data support the argument of a substantial cold bias in the observed global sea-surface-temperature record in the early twentieth century. Although estimates of global warming since the mid-nineteenth century are not affected, correcting the ocean cold bias would result in a more modest early-twentieth-century warming trend<sup>10</sup>, a lower estimate of decadal-scale variability inferred from the instrumental record<sup>3</sup>, and better agreement between simulated and observed warming than existing datasets suggest<sup>2</sup>.</p>","PeriodicalId":18787,"journal":{"name":"Nature","volume":"18 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142678376","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-20DOI: 10.1038/d41586-024-03753-z
Chemistry that can break carbon–fluorine bonds in persistent molecules called PFAS could help to clean up the environment. Testing in real-world settings must come next.
{"title":"‘Forever’ chemicals can be destroyed with clever chemistry — now test these techniques outside the lab","authors":"","doi":"10.1038/d41586-024-03753-z","DOIUrl":"https://doi.org/10.1038/d41586-024-03753-z","url":null,"abstract":"Chemistry that can break carbon–fluorine bonds in persistent molecules called PFAS could help to clean up the environment. Testing in real-world settings must come next.","PeriodicalId":18787,"journal":{"name":"Nature","volume":"18 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142678381","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-11-20DOI: 10.1038/d41586-024-03812-5
Hear the biggest stories from the world of science | 20 November 2024
聆听来自科学世界的重大事件|2024 年 11 月 20 日
{"title":"Squid-inspired pills squirt drugs straight into your gut","authors":"","doi":"10.1038/d41586-024-03812-5","DOIUrl":"https://doi.org/10.1038/d41586-024-03812-5","url":null,"abstract":"Hear the biggest stories from the world of science | 20 November 2024","PeriodicalId":18787,"journal":{"name":"Nature","volume":"14 1","pages":""},"PeriodicalIF":64.8,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142678870","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}