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Graph neural network coarse-grain force field for the molecular crystal RDX 分子晶体 RDX 的图神经网络粗粒力场
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2024-09-07 DOI: 10.1038/s41524-024-01407-2
Brian H. Lee, James P. Larentzos, John K. Brennan, Alejandro Strachan

Condense phase molecular systems organize in wide range of distinct molecular configurations, including amorphous melt and glass as well as crystals often exhibiting polymorphism, that originate from their intricate intra- and intermolecular forces. While accurate coarse-grain (CG) models for these materials are critical to understand phenomena beyond the reach of all-atom simulations, current models cannot capture the diversity of molecular structures. We introduce a generally applicable approach to develop CG force fields for molecular crystals combining graph neural networks (GNN) and data from an all-atom simulations and apply it to the high-energy density material RDX. We address the challenge of expanding the training data with relevant configurations via an iterative procedure that performs CG molecular dynamics of processes of interest and reconstructs the atomistic configurations using a pre-trained neural network decoder. The multi-site CG model uses a GNN architecture constructed to satisfy translational invariance and rotational covariance for forces. The resulting model captures both crystalline and amorphous states for a wide range of temperatures and densities.

凝结相分子体系具有多种不同的分子构型,包括无定形熔体和玻璃以及通常表现出多态性的晶体,这些构型源于其错综复杂的分子内力和分子间力。虽然这些材料的精确粗晶粒(CG)模型对于理解全原子模拟无法达到的现象至关重要,但目前的模型无法捕捉分子结构的多样性。我们介绍了一种普遍适用的方法,结合图神经网络(GNN)和来自全原子模拟的数据来开发分子晶体的 CG 力场,并将其应用于高能量密度材料 RDX。我们通过一个迭代程序,对感兴趣的过程执行 CG 分子动力学,并使用预先训练好的神经网络解码器重建原子构型,从而解决了用相关构型扩展训练数据的难题。多位点 CG 模型采用 GNN 架构,以满足力的平移不变性和旋转协方差。由此产生的模型可以捕捉到各种温度和密度下的结晶和无定形状态。
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引用次数: 0
Impact of heteroatoms and chemical functionalisation on crystal structure and carrier mobility of organic semiconductors 杂原子和化学功能化对有机半导体晶体结构和载流子迁移率的影响
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2024-09-04 DOI: 10.1038/s41524-024-01397-1
S. Hutsch, F. Ortmann

The substitution of heteroatoms and the functionalisation of molecules are established strategies in chemical synthesis. They target the precise tuning of the electronic properties of hydrocarbon molecules to improve their performance in various applications and increase their versatility. Modifications to the molecular structure often lead to simultaneous changes in the morphology such as different crystal structures. These changes can have a stronger and unpredictable impact on the targeted property. The complex relationships between substitution/functionalization in chemical synthesis and the resulting modifications of properties in thin films or crystals are difficult to predict and remain elusive. Here we address these effects for charge carrier transport in organic crystals by combining simulations of carrier mobilities with crystal structure prediction based on density functional theory and density functional tight binding theory. This enables the prediction of carrier mobilities based solely on the molecular structure and allows for the investigation of chemical modifications prior to synthesis and characterisation. Studying nine specific molecules with tetracene and rubrene as reference compounds along with their combined modifications of the molecular cores and additional functionalisations, we unveil systematic trends for the carrier mobilities of their polymorphs. The positive effect of phenyl groups that is responsible for the marked differences between tetracene and rubrene can be transferred to other small molecules such as NDT and NBT leading to a mobility increase by large factors of about five.

杂原子的取代和分子的官能化是化学合成的既定策略。它们的目标是精确调整碳氢化合物分子的电子特性,以改善其在各种应用中的性能并提高其多功能性。分子结构的改变往往会同时导致形态的改变,如不同的晶体结构。这些变化会对目标特性产生更强烈和不可预测的影响。化学合成中的取代/官能化与由此导致的薄膜或晶体特性改变之间的复杂关系难以预测,而且仍然难以捉摸。在此,我们将载流子迁移率模拟与基于密度泛函理论和密度泛函紧密结合理论的晶体结构预测相结合,以解决有机晶体中电荷载流子传输的这些影响。这样就能仅根据分子结构预测载流子迁移率,并在合成和表征之前对化学修饰进行研究。通过研究以蒽和芘为参考化合物的九种特定分子及其分子核心和附加官能团的组合修饰,我们揭示了其多晶型载流子迁移率的系统趋势。造成蒽和芘之间明显差异的苯基的积极作用可以转移到其他小分子上,如 NDT 和 NBT,从而使迁移率增加约五倍。
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引用次数: 0
Co-training machine learning enables interpretable discovery of near-infrared phosphors with high performance 联合训练机器学习可实现高性能近红外荧光粉的可解释性发现
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2024-09-03 DOI: 10.1038/s41524-024-01395-3
Wei Xu, Rui Wang, Chunhai Hu, Guilin Wen, Junqi Cui, Longjiang Zheng, Zhen Sun, Yungang Zhang, Zhiguo Zhang

Near-infrared (NIR) phosphors based on Cr3+ doped garnets present great potential in the next generation of NIR light sources. Nevertheless, the huge searching space for the garnet composition makes the rapid discovery of NIR phosphors with high performance remain a great challenge for the scientific community. Herein, a generalizable machine learning (ML) strategy is designed to accelerate the exploration of innovative NIR phosphors via establishing the relationship between key parameters and emission peak wavelength (EPW). We propose a semi-supervised co-training model based on kernel ridge regression (KRR) and support vector regression (SVR), which successfully establishes an expanded dataset with unlabeled dataset (previously unidentified garnets), addressing the overfitting issue resulted from a small dataset and greatly improving the model generalization capability. The model is then interpreted to extract valuable insights into the contribution originated from different features. And a new type NIR luminescent material of Lu3Y2Ga3O12: Cr3+ (EPW~750 nm) is efficiently screened, which demonstrates a high internal (external) quantum efficiency of 97.1% (38.8%) and good thermal stability, particularly exhibiting promising application in the NIR phosphor-converted LEDs (pc-LED). These results suggest the strategy proposed in this work could provide new viewpoint and direction for developing NIR luminescence materials.

基于掺杂 Cr3+ 的石榴石的近红外(NIR)荧光粉在下一代近红外光源中具有巨大潜力。然而,石榴石成分的巨大搜索空间使得快速发现高性能的近红外荧光粉仍然是科学界面临的巨大挑战。在此,我们设计了一种可推广的机器学习(ML)策略,通过建立关键参数与发射峰值波长(EPW)之间的关系,加速探索创新型近红外荧光粉。我们提出了一种基于核岭回归(KRR)和支持向量回归(SVR)的半监督协同训练模型,该模型成功建立了一个包含未标记数据集(以前未识别的石榴石)的扩展数据集,解决了小数据集导致的过拟合问题,大大提高了模型的泛化能力。然后对模型进行解释,以提取不同特征贡献的宝贵见解。此外,还有效筛选出一种新型近红外发光材料 Lu3Y2Ga3O12:Cr3+(EPW~750 nm),其内(外)量子效率高达 97.1%(38.8%),热稳定性好,在近红外荧光粉转换 LED(pc-LED)中的应用前景尤为广阔。这些结果表明,这项工作提出的策略可为开发近红外发光材料提供新的视角和方向。
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引用次数: 0
High temperature ferrimagnetic semiconductors by spin-dependent doping in high temperature antiferromagnets 在高温反铁磁体中通过自旋掺杂实现高温铁磁半导体
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2024-09-03 DOI: 10.1038/s41524-024-01362-y
Jia-Wen Li, Gang Su, Bo Gu

To realize room temperature ferromagnetic (FM) semiconductors is still a challenge in spintronics. Many antiferromagnetic (AFM) insulators and semiconductors with high Neel temperature TN are obtained in experiments, such as LaFeO3, BiFeO3, etc. High concentrations of magnetic impurities can be doped into these AFM materials, but AFM state with very tiny net magnetic moments was obtained in experiments because the magnetic impurities were equally doped into the spin up and down sublattices of the AFM materials. Here, we propose that the effective magnetic field provided by a FM substrate could guarantee the spin-dependent doping in AFM materials, where the doped magnetic impurities prefer one sublattice of spins, and the ferrimagnetic (FIM) materials are obtained. To demonstrate this proposal, we study the Mn-doped AFM insulator LaFeO3 with FM substrate of Fe metal by the density functional theory (DFT) calculations. It is shown that the doped magnetic Mn impurities prefer to occupy one sublattice of the AFM insulator and introduce large magnetic moments in La(Fe, Mn)O3. For the AFM insulator LaFeO3 with high TN = 740 K, several FIM semiconductors with high Curie temperature TC > 300 K and the band gap less than 2 eV are obtained by DFT calculations when 1/8 or 1/4 Fe atoms in LaFeO3 are replaced by the other 3d, 4d transition metal elements. The large magneto-optical Kerr effect (MOKE) is obtained in these LaFeO3-based FIM semiconductors. In addition, the FIM semiconductors with high TC are also obtained by spin-dependent doping in some other AFM materials with high TN, including BiFeO3, SrTcO3, CaTcO3, etc. Our theoretical results propose a way to obtain high TC FIM semiconductors by spin-dependent doping in high TN AFM insulators and semiconductors.

实现室温铁磁(FM)半导体仍然是自旋电子学的一项挑战。许多反铁磁(AFM)绝缘体和半导体都在实验中获得了较高的奈尔温度 TN,如 LaFeO3、BiFeO3 等。这些 AFM 材料中可以掺入高浓度的磁性杂质,但由于磁性杂质在 AFM 材料的自旋上、下亚晶格中的掺入量相同,因此在实验中得到的 AFM 状态的净磁矩非常小。在这里,我们提出调频基底提供的有效磁场可以保证 AFM 材料中的自旋掺杂,其中掺杂的磁性杂质更倾向于一个自旋子晶格,从而得到铁磁性(FIM)材料。为了证明这一提议,我们通过密度泛函理论(DFT)计算研究了以铁金属为调频基底的掺锰 AFM 绝缘体 LaFeO3。结果表明,掺杂磁性锰杂质倾向于占据 AFM 绝缘体的一个子晶格,并在 La(Fe, Mn)O3 中引入大磁矩。对于高 TN = 740 K 的 AFM 绝缘体 LaFeO3,当 LaFeO3 中的 1/8 或 1/4 铁原子被其他 3d 或 4d 过渡金属元素取代时,通过 DFT 计算可以得到几种居里温度 TC > 300 K 高且带隙小于 2 eV 的 FIM 半导体。在这些基于 LaFeO3 的 FIM 半导体中,还获得了大的磁光克尔效应(MOKE)。此外,通过自旋依赖性掺杂在其他一些具有高TN的AFM材料(包括BiFeO3、SrTcO3、CaTcO3等)中,也能获得具有高TC的FIM半导体。我们的理论结果提出了在高 TN AFM 绝缘体和半导体中通过自旋掺杂获得高 TC FIM 半导体的方法。
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引用次数: 0
Accelerated discovery of eutectic compositionally complex alloys by generative machine learning 通过生成式机器学习加速发现共晶成分复杂的合金
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2024-09-03 DOI: 10.1038/s41524-024-01385-5
Z. Q. Chen, Y. H. Shang, X. D. Liu, Y. Yang

Eutectic alloys have garnered significant attention due to their promising mechanical and physical properties, as well as their technological relevance. However, the discovery of eutectic compositionally complex alloys (ECCAs) (e.g. high entropy eutectic alloys) remains a formidable challenge in the vast and intricate compositional space, primarily due to the absence of readily available phase diagrams. To address this issue, we have developed an explainable machine learning (ML) framework that integrates conditional variational autoencoder (CVAE) and artificial neutral network (ANN) models, enabling direct generation of ECCAs. To overcome the prevalent problem of data imbalance encountered in data-driven ECCA design, we have incorporated thermodynamics-derived data descriptors and employed K-means clustering methods for effective data pre-processing. Leveraging our ML framework, we have successfully discovered dual- or even tri-phased ECCAs, spanning from quaternary to senary alloy systems, which have not been previously reported in the literature. These findings hold great promise and indicate that our ML framework can play a pivotal role in accelerating the discovery of technologically significant ECCAs.

共晶合金因其良好的机械和物理特性及其技术相关性而备受关注。然而,在广阔而错综复杂的成分空间中,发现共晶成分复杂合金(ECCA)(如高熵共晶合金)仍然是一项艰巨的挑战,这主要是由于缺乏现成的相图。为解决这一问题,我们开发了一种可解释的机器学习(ML)框架,该框架集成了条件变异自动编码器(CVAE)和人工中性网络(ANN)模型,可直接生成 ECCA。为了克服数据驱动 ECCA 设计中普遍遇到的数据不平衡问题,我们纳入了热力学衍生数据描述符,并采用 K-means 聚类方法进行有效的数据预处理。利用我们的 ML 框架,我们成功地发现了从四元合金系统到三元合金系统的双相甚至三相 ECCA,这在以前的文献中从未报道过。这些发现前景广阔,表明我们的 ML 框架可以在加速发现具有重要技术意义的 ECCA 方面发挥关键作用。
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引用次数: 0
Obtaining parallax-free X-ray powder diffraction computed tomography data with a self-supervised neural network 利用自监督神经网络获取无视差 X 射线粉末衍射计算机断层扫描数据
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2024-09-02 DOI: 10.1038/s41524-024-01389-1
H. Dong, S. D. M. Jacques, K. T. Butler, O. Gutowski, A.-C. Dippel, M. von Zimmerman, A. M. Beale, A. Vamvakeros

In this study, we introduce a method designed to eliminate parallax artefacts present in X-ray powder diffraction computed tomography data acquired from large samples. These parallax artefacts manifest as artificial peak shifting, broadening and splitting, leading to inaccurate physicochemical information, such as lattice parameters and crystallite sizes. Our approach integrates a 3D artificial neural network architecture with a forward projector that accounts for the experimental geometry and sample thickness. It is a self-supervised tomographic volume reconstruction approach designed to be chemistry-agnostic, eliminating the need for prior knowledge of the sample’s chemical composition. We showcase the efficacy of this method through its application on both simulated and experimental X-ray powder diffraction tomography data, acquired from a phantom sample and an NMC532 cylindrical lithium-ion battery.

在本研究中,我们介绍了一种旨在消除从大型样品中获取的 X 射线粉末衍射计算机断层成像数据中存在的视差伪影的方法。这些视差伪影表现为人为的峰值移动、展宽和分裂,导致物理化学信息(如晶格参数和晶粒尺寸)不准确。我们的方法将三维人工神经网络架构与考虑到实验几何和样品厚度的前向投影仪集成在一起。它是一种自我监督的断层体积重建方法,其设计与化学无关,无需事先了解样品的化学成分。我们将这种方法应用于模拟和实验 X 射线粉末衍射层析成像数据,展示了它的功效,这些数据来自一个模型样品和一个 NMC532 圆柱形锂离子电池。
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引用次数: 0
Enhanced high harmonic efficiency through phonon-assisted photodoping effect 通过声子辅助光掺杂效应提高高次谐波效率
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2024-09-02 DOI: 10.1038/s41524-024-01399-z
Jin Zhang, Ofer Neufeld, Nicolas Tancogne-Dejean, I-Te Lu, Hannes Hübener, Umberto De Giovannini, Angel Rubio

High-harmonic generation (HHG) has emerged as a central technique in attosecond science and strong-field physics, providing a tool for investigating ultrafast dynamics. However, the microscopic mechanism of HHG in solids is still under debate, and it is unclear how it is modified in the ubiquitous presence of phonons. Here we theoretically investigate the role of collectively coherent vibrations in HHG in a wide range of solids (e.g., hBN, graphite, 2H-MoS2, and diamond). We predict that phonon-assisted high harmonic yields can be significantly enhanced, compared to the phonon-free case – up to a factor of ~20 for a transverse optical phonon in bulk hBN. We also show that the emitted harmonics strongly depend on the character of the pumped vibrational modes. Through state-of-the-art ab initio calculations, we elucidate the physical origin of the HHG yield enhancement – phonon-assisted photoinduced carrier doping, which plays a paramount role in both intraband and interband electron dynamics. Our research illuminates a clear pathway toward comprehending phonon-mediated nonlinear optical processes within materials, offering a powerful tool to deliberately engineer and govern solid-state high harmonics.

高次谐波发生(HHG)已成为阿秒科学和强场物理学的核心技术,为研究超快动力学提供了一种工具。然而,高次谐波发生在固体中的微观机制仍在争论之中,目前还不清楚它是如何在声子无处不在的情况下发生改变的。在此,我们从理论上研究了各种固体(如氢化硼、石墨、2H-MoS2 和金刚石)中集体相干振动在 HHG 中的作用。我们预测,与无声子的情况相比,声子辅助的高次谐波产率会显著提高--对于块状氢化硼中的横向光学声子而言,可提高约 20 倍。我们还表明,发射的谐波与泵浦振动模式的特性密切相关。通过最先进的 ab initio 计算,我们阐明了 HHG 产率增强的物理来源--声子辅助光诱导载流子掺杂,它在带内和带间电子动力学中发挥着至关重要的作用。我们的研究为理解材料内部声子介导的非线性光学过程指明了一条清晰的道路,为有意设计和治理固态高次谐波提供了强有力的工具。
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引用次数: 0
Unraveling the electronic properties in SiO2 under ultrafast laser irradiation 揭示超快激光照射下二氧化硅的电子特性
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2024-08-31 DOI: 10.1038/s41524-024-01350-2
Arshak Tsaturyan, Elena Kachan, Razvan Stoian, Jean-Philippe Colombier

First-principles simulations were conducted to explore various electronic properties of crystalline SiO2 (α-quartz) under ultrafast laser irradiation. Employing Density Functional Perturbation Theory and the many-body (GW) approximation, we calculated the impact of thermally excited electrons on the electronic specific heat, electron pressure, effective mass, deformation potential, electron-phonon coupling and electron relaxation time of quartz, covering a wide range of electron temperatures, up to 100,000 K. We show that the electron-phonon relaxation time of highly-excited quartz becomes twice faster compared to low-excited states. The deformation potential, which dictates atomic displacement, has a non-monotonic behavior with a well-pronounced minimum at around 16,000 K (2.7 × 1021 cm−3 of excited electrons) where the bond ionicity of the Si-O starts decreasing followed by a cohesion loss at 35,000 K due to the pressure exerted by the excited electrons on the lattice. Consequently, our calculated data, illustrating the evolution of physical parameters, can facilitate simulations of laser-matter interactions and provide predictive insights into the behavior of quartz under experimental conditions.

我们进行了第一性原理模拟,以探索晶体二氧化硅(α-石英)在超快激光照射下的各种电子特性。利用密度泛函扰动理论和多体近似(GW),我们计算了热激发电子对石英的电子比热、电子压力、有效质量、形变势、电子-声子耦合和电子弛豫时间的影响,涵盖了高达 100,000 K 的电子温度范围。决定原子位移的形变势具有非单调行为,在 16,000 K 左右(激发电子为 2.7 × 1021 cm-3)有一个明显的最小值,Si-O 键的离子性开始下降,随后由于激发电子对晶格施加的压力,在 35,000 K 时内聚力下降。因此,我们的计算数据说明了物理参数的演变,有助于模拟激光与物质之间的相互作用,并对石英在实验条件下的行为提供预测性见解。
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引用次数: 0
Competing nucleation pathways in nanocrystal formation 纳米晶体形成过程中的竞争成核途径
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2024-08-30 DOI: 10.1038/s41524-024-01371-x
Carlos R. Salazar, Akshay Krishna Ammothum Kandy, Jean Furstoss, Quentin Gromoff, Jacek Goniakowski, Julien Lam

Despite numerous efforts from numerical approaches to complement experimental measurements, several fundamental challenges have still hindered one’s ability to truly provide an atomistic picture of the nucleation process in nanocrystals. Among them, our study resolves three obstacles: (1) Machine-learning force fields including long-range interactions able to capture the finesse of the underlying atomic interactions, (2) Data-driven characterization of the local ordering in a complex structural landscape associated with several crystal polymorphs and (3) Comparing results from a large range of temperatures using both brute-force and rare-event sampling. Altogether, our simulation strategy has allowed us to study zinc oxide crystallization from nano-droplet melt. Remarkably, our results show that different nucleation pathways compete depending on the investigated degree of supercooling.

尽管数值方法在补充实验测量方面做出了许多努力,但仍有一些基本挑战阻碍了人们真正提供纳米晶体成核过程的原子图景。其中,我们的研究解决了三个障碍:(1) 机器学习力场包括长程相互作用,能够捕捉底层原子相互作用的细微差别;(2) 以数据为驱动,描述与多种晶体多晶体相关的复杂结构景观中的局部有序性;(3) 利用暴力采样和稀有事件采样,比较大范围温度下的结果。总之,我们的模拟策略使我们能够研究纳米液滴熔体的氧化锌结晶。值得注意的是,我们的结果表明,不同的成核途径会因研究的过冷程度而产生竞争。
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引用次数: 0
CELL: a Python package for cluster expansion with a focus on complex alloys CELL:用于集群扩展的 Python 软件包,侧重于复杂合金
IF 9.7 1区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2024-08-30 DOI: 10.1038/s41524-024-01363-x
Santiago Rigamonti, Maria Troppenz, Martin Kuban, Axel Hübner, Claudia Draxl

We present the Python package CELL, which provides a modular approach to the cluster expansion (CE) method. CELL can treat a wide variety of substitutional systems, including one-, two-, and three-dimensional alloys, in a general multi-component and multi-sublattice framework. It is capable of dealing with complex materials comprising several atoms in their parent lattice. CELL uses state-of-the-art techniques for the construction of training data sets, model selection, and finite-temperature simulations. The user interface consists of well-documented Python classes and modules (http://sol.physik.hu-berlin.de/cell/). CELL also provides visualization utilities and can be interfaced with virtually any ab initio package, total-energy codes based on interatomic potentials, and more. The usage and capabilities of CELL are illustrated by a number of examples, comprising a Cu-Pt surface alloy with oxygen adsorption, featuring two coupled binary sublattices, and the thermodynamic analysis of its order-disorder transition; the demixing transition and lattice-constant bowing of the Si-Ge alloy; and an iterative CE approach for a complex clathrate compound with a parent lattice consisting of 54 atoms.

我们介绍了 Python 软件包 CELL,它为聚类展开(CE)方法提供了一种模块化方法。CELL 可以在一个通用的多组分和多子晶格框架内处理各种各样的置换系统,包括一维、二维和三维合金。它能够处理母晶格中包含多个原子的复杂材料。CELL 采用最先进的技术来构建训练数据集、选择模型和进行有限温度模拟。用户界面由记录完备的 Python 类和模块组成(http://sol.physik.hu-berlin.de/cell/)。CELL 还提供可视化实用程序,并可与几乎所有原子序数软件包、基于原子间势能的总能代码等连接。CELL 的用法和功能通过大量实例进行了说明,其中包括具有氧吸附功能的铜铂表面合金(具有两个耦合二元子晶格)及其阶-阶转变的热力学分析;硅-锗合金的脱混转变和晶格常数弓形;以及针对由 54 个原子组成的母晶格的复杂克拉合物的迭代 CE 方法。
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引用次数: 0
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