Pub Date : 2026-01-01DOI: 10.1016/j.stress.2025.101207
Liru Mi , Yanjing Guo , Jiale Shi , He Wang , Min Chen , Dan Cheng , Hongyu Ma , Shiguo Chen
The pathogenic fungus Alternaria alternata induces chloroplast-derived singlet oxygen (1O2) production and activates EXECUTER (EX)1-dependent 1O2 signaling in Arabidopsis through tenuazonic acid (TeA), its key virulence factor leading to plant death. This 1O2 is known to trigger the biosynthesis and signaling of various defense hormones. TeA rapidly upregulates nuclear genes involved in jasmonic acid (JA) synthesis and signaling, and EX1-mediated reverse signaling appears to be a critical link for establishing a signaling cascade from 1O2 to JA. Although JA and ethylene (ET) are known to synergistically regulate plant defense responses against necrotrophic pathogens, the precise role of ET in A. alternata-induced disease development in Arabidopsis remains unclear, and relatively little research has examined potential cross-talk between ET and ¹O2 signaling. Our investigations revealed that A. alternata infection significantly enhances the expression of ET response genes (ETRGs) and that EX1EX2 inactivation leads to a significant reduction in ETRGs expression levels. Through the exogenous application of both an ET precursor (1-aminocyclopropane-1-carboxylic acid) and ET inhibitor (silver thiosulfate), we corroborated that ET contributes to the expression of 1O2-responsive genes (SORGs) and the progression of disease. This suggests that ET signaling interacts with EX1-dependent 1O2 signaling thereby promoting 1O2-induced cell death. Concurrently, we observed that inactivation of EIN2 and ERF6 results in reduced levels of JA synthesis gene expression and JA production, and that the AOC3 mutation reduces the expression levels of A. alternata-induced ETRGs. The findings collectively demonstrate that ET promotes the expression of JA-responsive genes (JARGs) and JA production, which, in turn, exacerbates the sensitivity of Arabidopsis to A. alternata.
{"title":"Ethylene promotes singlet oxygen-mediated disease development in Arabidopsis infected by fungus Alternaria alternata","authors":"Liru Mi , Yanjing Guo , Jiale Shi , He Wang , Min Chen , Dan Cheng , Hongyu Ma , Shiguo Chen","doi":"10.1016/j.stress.2025.101207","DOIUrl":"10.1016/j.stress.2025.101207","url":null,"abstract":"<div><div>The pathogenic fungus <em>Alternaria alternata</em> induces chloroplast-derived singlet oxygen (<sup>1</sup>O<sub>2</sub>) production and activates EXECUTER (EX)1-dependent <sup>1</sup>O<sub>2</sub> signaling in <em>Arabidopsis</em> through tenuazonic acid (TeA), its key virulence factor leading to plant death. This <sup>1</sup>O<sub>2</sub> is known to trigger the biosynthesis and signaling of various defense hormones. TeA rapidly upregulates nuclear genes involved in jasmonic acid (JA) synthesis and signaling, and EX1-mediated reverse signaling appears to be a critical link for establishing a signaling cascade from <sup>1</sup>O<sub>2</sub> to JA. Although JA and ethylene (ET) are known to synergistically regulate plant defense responses against necrotrophic pathogens, the precise role of ET in <em>A. alternata</em>-induced disease development in <em>Arabidopsis</em> remains unclear, and relatively little research has examined potential cross-talk between ET and ¹O<sub>2</sub> signaling. Our investigations revealed that <em>A. alternata</em> infection significantly enhances the expression of ET response genes (ETRGs) and that <em>EX1EX2</em> inactivation leads to a significant reduction in ETRGs expression levels. Through the exogenous application of both an ET precursor (1-aminocyclopropane-1-carboxylic acid) and ET inhibitor (silver thiosulfate), we corroborated that ET contributes to the expression of <sup>1</sup>O<sub>2</sub>-responsive genes (SORGs) and the progression of disease. This suggests that ET signaling interacts with EX1-dependent <sup>1</sup>O<sub>2</sub> signaling thereby promoting <sup>1</sup>O<sub>2</sub>-induced cell death. Concurrently, we observed that inactivation of <em>EIN2</em> and <em>ERF6</em> results in reduced levels of JA synthesis gene expression and JA production, and that the <em>AOC3</em> mutation reduces the expression levels of <em>A. alternata</em>-induced ETRGs. The findings collectively demonstrate that ET promotes the expression of JA-responsive genes (JARGs) and JA production, which, in turn, exacerbates the sensitivity of <em>Arabidopsis</em> to <em>A. alternata</em>.</div></div>","PeriodicalId":34736,"journal":{"name":"Plant Stress","volume":"19 ","pages":"Article 101207"},"PeriodicalIF":6.8,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145925153","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-01DOI: 10.1016/j.stress.2025.101215
Tetiana Kalachova , Barbora Jindřichová , Manuel Blouin , Romana Pospíchalová , Lenka Burketová , Eric Ruelland , Ruben Puga-Freitas
Plant-pathogen interactions are influenced by physiological responses and rhizospheric microorganisms, which can create disease-suppressive or disease-conducive soils affecting pathogen dynamics. This study used artificial selection to shape soil microbiota conditioned by Arabidopsis thaliana to either suppress or promote the foliar pathogen Pseudomonas syringae DC3000 (Pst). Over successive iterations, plants were inoculated with Pst, and soils were selected based on plant symptoms: enhanced resistance (suppressive), increased susceptibility (conducive), or no selection (control). A non-inoculated group (non-conditioned) was also included. Disease symptoms, Pst proliferation, and rhizosphere microbiota were monitored each iteration. Selection for suppressive soils reduced disease severity and Pst levels, while conducive soils showed the opposite. Each soil type was enriched in distinct bacterial communities. A growth-defense trade-off was evident in control soils but less so in selected soils. Gene expression analysis revealed that plant hormone homeostasis, especially salicylic acid (SA) and jasmonic acid (JA) played key roles with SA linked to local defense and JA to systemic responses. This work highlights artificial selection as a promising strategy to modulate soil microbiota, influencing plant-pathogen interactions and microbial dynamics.
{"title":"Artificial selection of suppressive or conducive rhizosphere microbiota circumvents the growth-defense trade-off due to a foliar pathogen","authors":"Tetiana Kalachova , Barbora Jindřichová , Manuel Blouin , Romana Pospíchalová , Lenka Burketová , Eric Ruelland , Ruben Puga-Freitas","doi":"10.1016/j.stress.2025.101215","DOIUrl":"10.1016/j.stress.2025.101215","url":null,"abstract":"<div><div>Plant-pathogen interactions are influenced by physiological responses and rhizospheric microorganisms, which can create disease-suppressive or disease-conducive soils affecting pathogen dynamics. This study used artificial selection to shape soil microbiota conditioned by <em>Arabidopsis thaliana</em> to either suppress or promote the foliar pathogen <em>Pseudomonas syringae</em> DC3000 (<em>Pst</em>). Over successive iterations, plants were inoculated with <em>Pst</em>, and soils were selected based on plant symptoms: enhanced resistance (suppressive), increased susceptibility (conducive), or no selection (control). A non-inoculated group (non-conditioned) was also included. Disease symptoms, <em>Pst</em> proliferation, and rhizosphere microbiota were monitored each iteration. Selection for suppressive soils reduced disease severity and <em>Pst</em> levels, while conducive soils showed the opposite. Each soil type was enriched in distinct bacterial communities. A growth-defense trade-off was evident in control soils but less so in selected soils. Gene expression analysis revealed that plant hormone homeostasis, especially salicylic acid (SA) and jasmonic acid (JA) played key roles with SA linked to local defense and JA to systemic responses. This work highlights artificial selection as a promising strategy to modulate soil microbiota, influencing plant-pathogen interactions and microbial dynamics.</div></div>","PeriodicalId":34736,"journal":{"name":"Plant Stress","volume":"19 ","pages":"Article 101215"},"PeriodicalIF":6.8,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145925154","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Tomato plants constantly encounter fungal pathogens, which trigger intricate defense mechanisms at the molecular level. Among these, upstream open reading frames (uORFs) and main open reading frames (mORFs), together with microRNAs (miRNAs), play pivotal roles in orchestrating stress-responsive gene regulation. uORFs and mORFs encode or influence the synthesis of key proteins involved in pathogen recognition, signal transduction, and immune activation, whereas miRNAs act as post-transcriptional regulators that fine-tune the expression of these defense-related genes, including those governing signaling pathways and transcription factors. Recent studies have revealed coordinated crosstalk between uORFs, mORFs, and miRNAs that collectively shape tomato defense strategies against major fungal pathogens such as Botrytis cinerea and Fusarium oxysporum. This review synthesizes current insights into how uORFs and miRNAs interact to modulate immune regulation, gene silencing, and adaptive stress responses in tomato. A deeper understanding of these molecular networks offers promising avenues for developing fungal-resistant tomato cultivars through targeted genetic and biotechnological interventions.
{"title":"The consciousness of stress: Functional roles of ORFs and MicroRNAs in tomato defense against fungal pathogens","authors":"Misbah Naz, Zhibing Rui, Haowen Ni, Muhammad Rahil Afzal, Zhuo Chen","doi":"10.1016/j.stress.2025.101194","DOIUrl":"10.1016/j.stress.2025.101194","url":null,"abstract":"<div><div>Tomato plants constantly encounter fungal pathogens, which trigger intricate defense mechanisms at the molecular level. Among these, upstream open reading frames (uORFs) and main open reading frames (mORFs), together with microRNAs (miRNAs), play pivotal roles in orchestrating stress-responsive gene regulation. uORFs and mORFs encode or influence the synthesis of key proteins involved in pathogen recognition, signal transduction, and immune activation, whereas miRNAs act as post-transcriptional regulators that fine-tune the expression of these defense-related genes, including those governing signaling pathways and transcription factors. Recent studies have revealed coordinated crosstalk between uORFs, mORFs, and miRNAs that collectively shape tomato defense strategies against major fungal pathogens such as <em>Botrytis cinerea</em> and <em>Fusarium oxysporum</em>. This review synthesizes current insights into how uORFs and miRNAs interact to modulate immune regulation, gene silencing, and adaptive stress responses in tomato. A deeper understanding of these molecular networks offers promising avenues for developing fungal-resistant tomato cultivars through targeted genetic and biotechnological interventions.</div></div>","PeriodicalId":34736,"journal":{"name":"Plant Stress","volume":"19 ","pages":"Article 101194"},"PeriodicalIF":6.8,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145925155","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-01DOI: 10.1016/j.stress.2025.101192
Iram Batool , Yiwa Hu , Kangni Zhang , Fakhir Hannan , Yongqi Sun , Tongjun Qin , Muhammad Shahbaz Naeem , Muhammad Ahsan Farooq , Ahsan Ayyaz , Weijun Zhou
Chromium (Cr), a pervasive and toxic heavy metal contaminant of agricultural soils, poses a significant threat to crop productivity and food safety. Silicon nanoparticles (Si-NPs) represent a promising nano-enabled strategy for mitigating heavy metal toxicity in plants. However, the molecular mechanisms by which Si-NPs confer Cr tolerance in major crops such as Brassica napus are not fully elucidated. This study investigated the physiological and transcriptomic responses of B. napus to Cr stress and the protective role of Si-NPs. We found that Si-NPs application significantly improved plant growth and biomass while reducing Cr translocation to shoots. Physiologically, Si-NPs alleviated Cr-induced oxidative stress by enhancing antioxidant defense and reducing reactive oxygen species and lipid peroxidation. RNA-seq analysis revealed that Cr stress profoundly dysregulated genes involved in metal transport, oxidative response, and phenylpropanoid biosynthesis. Crucially, Si-NPs induced a protective transcriptional reprogramming, upregulating genes associated with metal chelation and sequestration (e.g., metallothioneins, ABC transporters), antioxidant enzymes, and the biosynthesis of lignin and flavonoids. These changes are consistent with enhanced metal detoxification and reinforced cell walls, effectively reducing Cr mobility and toxicity. Our findings decipher the key molecular pathways through which Si-NPs enhance Cr tolerance in B. napus, providing crucial insights for developing Si-NP-based strategies to cultivate crops in Cr-contaminated environments.
{"title":"Integrated transcriptomic and physiological analyses elucidate the role of silicon nanoparticles in chromium detoxification in Brassica napus","authors":"Iram Batool , Yiwa Hu , Kangni Zhang , Fakhir Hannan , Yongqi Sun , Tongjun Qin , Muhammad Shahbaz Naeem , Muhammad Ahsan Farooq , Ahsan Ayyaz , Weijun Zhou","doi":"10.1016/j.stress.2025.101192","DOIUrl":"10.1016/j.stress.2025.101192","url":null,"abstract":"<div><div>Chromium (Cr), a pervasive and toxic heavy metal contaminant of agricultural soils, poses a significant threat to crop productivity and food safety. Silicon nanoparticles (Si-NPs) represent a promising nano-enabled strategy for mitigating heavy metal toxicity in plants. However, the molecular mechanisms by which Si-NPs confer Cr tolerance in major crops such as <em>Brassica napus</em> are not fully elucidated. This study investigated the physiological and transcriptomic responses of <em>B. napus</em> to Cr stress and the protective role of Si-NPs. We found that Si-NPs application significantly improved plant growth and biomass while reducing Cr translocation to shoots. Physiologically, Si-NPs alleviated Cr-induced oxidative stress by enhancing antioxidant defense and reducing reactive oxygen species and lipid peroxidation. RNA-seq analysis revealed that Cr stress profoundly dysregulated genes involved in metal transport, oxidative response, and phenylpropanoid biosynthesis. Crucially, Si-NPs induced a protective transcriptional reprogramming, upregulating genes associated with metal chelation and sequestration (e.g., metallothioneins, ABC transporters), antioxidant enzymes, and the biosynthesis of lignin and flavonoids. These changes are consistent with enhanced metal detoxification and reinforced cell walls, effectively reducing Cr mobility and toxicity. Our findings decipher the key molecular pathways through which Si-NPs enhance Cr tolerance in <em>B. napus</em>, providing crucial insights for developing Si-NP-based strategies to cultivate crops in Cr-contaminated environments.</div></div>","PeriodicalId":34736,"journal":{"name":"Plant Stress","volume":"19 ","pages":"Article 101192"},"PeriodicalIF":6.8,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145925242","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-01DOI: 10.1016/j.stress.2026.101220
Wenhao Yue , Xue Xia , Fangying Ge , Kangfeng Cai , Lei Liu , Yong Li , Chengdao Li , Junmei Wang
Phosphorus is an essential macronutrient for all living organisms. Although it is abundant in the Earth’s crust, inorganic phosphate (Pi)—accessible to plants—is often limited due to the soil’s physicochemical properties. To cope with Pi scarcity, plants have evolved a complex phosphate starvation response network centered around phosphate starvation response proteins (PHRs) to regulate cellular Pi homeostasis. However, a comprehensive understanding of physiological and molecular functions of PHRs in barley (Hordeum vulgare) remains elusive. In this study, we identified two homologous PHRs in barley, with HvPHR1 exhibiting higher expression across all developmental stages, suggesting a dominant role. Overexpression of HvPHR1 resulted in necrotic symptoms in mature leaf tips, which correlated with excessive Pi accumulation in leaves. Transcriptome analysis revealed 732 and 307 significantly differentially expressed genes in the roots and leaves, respectively, in the HvPHR1-overexpressing transgenic line grown under Pi-sufficient conditions. These genes were primarily associated with phosphate starvation responses and phosphate ion homeostasis. Using published exome resequencing data, we identified 12 SNPs in the CDS, introns, and 3’ UTR of HvPHR1, which were classified into four main haplotypes. Allele frequency analysis revealed that HvPHR1 underwent artificial selection during barley domestication. Furthermore, the nonsynonymous mutation of HvPHR1 did not affect its nuclear localization or transcriptional activation activity. These findings enhance our understanding of the vital role of HvPHR1 in maintaining Pi homeostasis in barley.
{"title":"HvPHR1 as a key gene in maintaining phosphate homeostasis in barley","authors":"Wenhao Yue , Xue Xia , Fangying Ge , Kangfeng Cai , Lei Liu , Yong Li , Chengdao Li , Junmei Wang","doi":"10.1016/j.stress.2026.101220","DOIUrl":"10.1016/j.stress.2026.101220","url":null,"abstract":"<div><div>Phosphorus is an essential macronutrient for all living organisms. Although it is abundant in the Earth’s crust, inorganic phosphate (Pi)—accessible to plants—is often limited due to the soil’s physicochemical properties. To cope with Pi scarcity, plants have evolved a complex phosphate starvation response network centered around phosphate starvation response proteins (PHRs) to regulate cellular Pi homeostasis. However, a comprehensive understanding of physiological and molecular functions of <em>PHRs</em> in barley (<em>Hordeum vulgare</em>) remains elusive. In this study, we identified two homologous <em>PHRs</em> in barley, with <em>HvPHR1</em> exhibiting higher expression across all developmental stages, suggesting a dominant role. Overexpression of <em>HvPHR1</em> resulted in necrotic symptoms in mature leaf tips, which correlated with excessive Pi accumulation in leaves. Transcriptome analysis revealed 732 and 307 significantly differentially expressed genes in the roots and leaves, respectively, in the <em>HvPHR1</em>-overexpressing transgenic line grown under Pi-sufficient conditions. These genes were primarily associated with phosphate starvation responses and phosphate ion homeostasis. Using published exome resequencing data, we identified 12 SNPs in the CDS, introns, and 3’ UTR of <em>HvPHR1</em>, which were classified into four main haplotypes. Allele frequency analysis revealed that <em>HvPHR1</em> underwent artificial selection during barley domestication. Furthermore, the nonsynonymous mutation of <em>HvPHR1</em> did not affect its nuclear localization or transcriptional activation activity. These findings enhance our understanding of the vital role of <em>HvPHR1</em> in maintaining Pi homeostasis in barley.</div></div>","PeriodicalId":34736,"journal":{"name":"Plant Stress","volume":"19 ","pages":"Article 101220"},"PeriodicalIF":6.8,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145925243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mineral nutrients are very crucial for plant survival and adaptation, playing a dynamic role in their growth, development, and production. Among these mineral nutrients, nitrogen (N), phosphorus (P), and potassium (K) stand out as essential macronutrients due to their pivotal and interconnecting roles in supporting plant growth, development, and stress adaptation. Plants developed a transport system to maintain balanced nutrients for sustainable crop productivity and environmental resilience. Although considerable research has focused on the NPK transport system, their integrated roles in coordinating mineral nutrition and stress tolerance remain insufficiently explored in wheat (Triticum aestivum L., 2n = 42, AABBDD). In the current study, we identified 21 N-related, 45 P-related, and 43 K-related transporter genes in T. aestivum, confirmed through the presence of conserved signature domains. These NPK-transporters in T. aestivum and A. thaliana were found as highly conserved within each subgroup, supported by phylogenetic, gene structure, and motif analysis. The protein–protein interaction (PPI) network analysis suggests coordinated regulatory networks among nutrient transporters. Gene Ontology (GO) enrichment analysis revealed that NPK transporters are involved not only in nutrient transport but also in various signaling pathways. The expression profiling in response to biotic and abiotic stresses revealed the differential regulation of NPKs in T. aestivum. Three identified candidates for NPK transporters (TaAMT2, TaPHT4.3, TaKT3) were further subjected to a combined abiotic stress and NPK application assay. The results revealed that the NPK availability modulates T. aestivum adaptation to combined abiotic stresses. Furthermore, the green fluorescent protein GFP revealed that the candidate genes were localized in the plasma membrane. Our study is a foundation to identify co-regulatory candidates for developing wheat varieties that maintain nutrition and yield under the complex stress scenarios of modern agriculture.
{"title":"NPK-transporters in wheat: linking mineral nutrition with combined abiotic stress adaptation","authors":"Zhiwei Wang , Tianyou Yuan , Aimen Shafique , Muhammad Salman Mubarik , Madiha Habib , Roshan Zameer , Farrukh Azeem , Shuiqing Zhang","doi":"10.1016/j.stress.2025.101187","DOIUrl":"10.1016/j.stress.2025.101187","url":null,"abstract":"<div><div>Mineral nutrients are very crucial for plant survival and adaptation, playing a dynamic role in their growth, development, and production. Among these mineral nutrients, nitrogen (N), phosphorus (P), and potassium (K) stand out as essential macronutrients due to their pivotal and interconnecting roles in supporting plant growth, development, and stress adaptation. Plants developed a transport system to maintain balanced nutrients for sustainable crop productivity and environmental resilience. Although considerable research has focused on the NPK transport system, their integrated roles in coordinating mineral nutrition and stress tolerance remain insufficiently explored in wheat (<em>Triticum aestivum L</em>., 2n = 42, AABBDD). In the current study, we identified 21 N-related, 45 P-related, and 43 K-related transporter genes in <em>T. aestivum</em>, confirmed through the presence of conserved signature domains. These NPK-transporters in <em>T. aestivum</em> and <em>A. thaliana</em> were found as highly conserved within each subgroup, supported by phylogenetic, gene structure, and motif analysis. The protein–protein interaction (PPI) network analysis suggests coordinated regulatory networks among nutrient transporters. Gene Ontology (GO) enrichment analysis revealed that NPK transporters are involved not only in nutrient transport but also in various signaling pathways. The expression profiling in response to biotic and abiotic stresses revealed the differential regulation of NPKs in <em>T. aestivum</em>. Three identified candidates for NPK transporters (TaAMT2, TaPHT4.3, TaKT3) were further subjected to a combined abiotic stress and NPK application assay. The results revealed that the NPK availability modulates <em>T. aestivum</em> adaptation to combined abiotic stresses. Furthermore, the green fluorescent protein GFP revealed that the candidate genes were localized in the plasma membrane. Our study is a foundation to identify co-regulatory candidates for developing wheat varieties that maintain nutrition and yield under the complex stress scenarios of modern agriculture.</div></div>","PeriodicalId":34736,"journal":{"name":"Plant Stress","volume":"19 ","pages":"Article 101187"},"PeriodicalIF":6.8,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145924729","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-01DOI: 10.1016/j.stress.2026.101223
Alice Zambelli , Michele Pesenti , Giorgio Lucchini , Adela María Sánchez-Moreiras , Luca Espen , Fabrizio Araniti , Fabio Francesco Nocito
Nootkatone, a natural sesquiterpenoid, has recently emerged as a candidate allelochemical for sustainable weed management. However, its phytotoxic effects and underlying mechanisms in plants remain poorly understood. In this study, we present a comprehensive characterization of nootkatone-induced toxicity in Arabidopsis thaliana, integrating physiological, metabolomic, and nutritional analyses. Exposure to increasing concentrations of nootkatone resulted in dose-dependent reductions in biomass and photosynthetic efficiency, accompanied by visible morphological damage. GC–MS-based metabolomic profiling revealed significant reprogramming of primary metabolism, particularly affecting amino acid biosynthesis and nitrogen-related pathways. Network analysis identified glutamic acid as an important metabolic hub, linking nitrogen assimilation to stress-related responses. Nutritional profiling and stable isotope analysis demonstrated that nootkatone disrupts nitrogen homeostasis by promoting ammonium uptake over nitrate assimilation. This shift was confirmed by 15N-labeled experiments, which showed reduced nitrate uptake and compensatory ammonium absorption. The altered nitrogen source preference was associated with increased accumulation of ammonium, free amino acids, and nitrogen-rich intermediates, consistent with typical symptoms of ammonium toxicity. These findings suggest a potential mechanism underlying nootkatone-induced phytotoxicity and underscore its promise as a bioactive compound for sustainable and environmentally friendly weed management strategies.
{"title":"Exogenous nootkatone impairs nitrogen nutrition by promoting ammonium over nitrate uptake in Arabidopsis thaliana","authors":"Alice Zambelli , Michele Pesenti , Giorgio Lucchini , Adela María Sánchez-Moreiras , Luca Espen , Fabrizio Araniti , Fabio Francesco Nocito","doi":"10.1016/j.stress.2026.101223","DOIUrl":"10.1016/j.stress.2026.101223","url":null,"abstract":"<div><div>Nootkatone, a natural sesquiterpenoid, has recently emerged as a candidate allelochemical for sustainable weed management. However, its phytotoxic effects and underlying mechanisms in plants remain poorly understood. In this study, we present a comprehensive characterization of nootkatone-induced toxicity in <em>Arabidopsis thaliana</em>, integrating physiological, metabolomic, and nutritional analyses. Exposure to increasing concentrations of nootkatone resulted in dose-dependent reductions in biomass and photosynthetic efficiency, accompanied by visible morphological damage. GC–MS-based metabolomic profiling revealed significant reprogramming of primary metabolism, particularly affecting amino acid biosynthesis and nitrogen-related pathways. Network analysis identified glutamic acid as an important metabolic hub, linking nitrogen assimilation to stress-related responses. Nutritional profiling and stable isotope analysis demonstrated that nootkatone disrupts nitrogen homeostasis by promoting ammonium uptake over nitrate assimilation. This shift was confirmed by <sup>15</sup>N-labeled experiments, which showed reduced nitrate uptake and compensatory ammonium absorption. The altered nitrogen source preference was associated with increased accumulation of ammonium, free amino acids, and nitrogen-rich intermediates, consistent with typical symptoms of ammonium toxicity. These findings suggest a potential mechanism underlying nootkatone-induced phytotoxicity and underscore its promise as a bioactive compound for sustainable and environmentally friendly weed management strategies.</div></div>","PeriodicalId":34736,"journal":{"name":"Plant Stress","volume":"19 ","pages":"Article 101223"},"PeriodicalIF":6.8,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145925239","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-01DOI: 10.1016/j.stress.2026.101221
Juncai Wang , Shengyang Xiao , Chao Ma , Yanyan Dong , Tao Jin , Yu Cai , Xiaofeng Liao , Yuangui Xie
Cadmium (Cd) contamination in agricultural soils poses a serious threat to food security and human health. Nitric oxide (NO), as redox-related signaling molecule, is known to promote plant growth and regulate soil quality in heavy metal-contamination soils. However, the regulatory mechanisms of NO in plant physiology and soil biochemistry have not been well-demonstrated. In this study, we investigated the role of exogenous application of sodium nitroprusside (SNP) as an NO donor additive on the growth performances, Cd accumulation and translocation, physiological biochemical response of plant, soil physicochemical properties, and soil microbial communities of hyperaccumulator Solanum nigrum L. in Cd-contaminated soil. Our results showed that 100 and 200 μmol·L−1 NO addition markedly increased the plant biomass by 16.22 % and 14.85 %, and enhanced the Cd accumulation by 46.91 % and 22.08 % in S. nigrum compared to the 100 mg·kg−1 Cd treatment alone, respectively. Moreover, NO supply could mitigate Cd phytotoxicity and oxidative damage by significantly increasing the activities of antioxidant enzymes and osmoregulatory substances content. In addition, NO addition significantly changes the soil physicochemical properties, including changed the SOC, CEC, the NH4+-N and NO3−-N contents, increased the content of soil microbial biomass carbon (MBC), microbial biomass nitrogen (MBN) and soil enzymatic activities, such as the 100 μmol·L−1 NO treatment increased 4.71 %, 7.45 %, 18.44 % and 29.46 % of the soil pH, EC, the content of NO3−-N and NH4+-N as compared to Cd stress alone under 50 mg·kg−1 Cd concentrations, respectively. Meanwhile, in Cd alone treatment, the soil bacterial diversity indexes were slightly increased, while the fungal diversity slightly decreased at low Cd concentrations and increased at high Cd level compared with no Cd addition groups. After NO addition, the soil bacterial and fungal diversity was enhanced compared to without NO addition. Exogenous NO treatment also significantly changed the structures of soil bacterial and fungal communities, and increased the relative abundance of soil beneficial microbial communities. Furthermore, interactions among soil environmental factors and NO addition significantly influenced dominant bacterial, and fungal taxa. These results provide proof that soil remediation with exogenous NO addition may be an effective method to improve soil microenvironment and enhance plant tolerance to metal stress.
{"title":"Exogenous application of nitric oxide promotes hyperaccumulator Solanum nigrum L. performances, soil properties, and microbial community in cadmium contaminated soil","authors":"Juncai Wang , Shengyang Xiao , Chao Ma , Yanyan Dong , Tao Jin , Yu Cai , Xiaofeng Liao , Yuangui Xie","doi":"10.1016/j.stress.2026.101221","DOIUrl":"10.1016/j.stress.2026.101221","url":null,"abstract":"<div><div>Cadmium (Cd) contamination in agricultural soils poses a serious threat to food security and human health. Nitric oxide (NO), as redox-related signaling molecule, is known to promote plant growth and regulate soil quality in heavy metal-contamination soils. However, the regulatory mechanisms of NO in plant physiology and soil biochemistry have not been well-demonstrated. In this study, we investigated the role of exogenous application of sodium nitroprusside (SNP) as an NO donor additive on the growth performances, Cd accumulation and translocation, physiological biochemical response of plant, soil physicochemical properties, and soil microbial communities of hyperaccumulator <em>Solanum nigrum</em> L. in Cd-contaminated soil. Our results showed that 100 and 200 μmol·L<sup>−1</sup> NO addition markedly increased the plant biomass by 16.22 % and 14.85 %, and enhanced the Cd accumulation by 46.91 % and 22.08 % in <em>S. nigrum</em> compared to the 100 mg·kg<sup>−1</sup> Cd treatment alone, respectively. Moreover, NO supply could mitigate Cd phytotoxicity and oxidative damage by significantly increasing the activities of antioxidant enzymes and osmoregulatory substances content. In addition, NO addition significantly changes the soil physicochemical properties, including changed the SOC, CEC, the NH<sub>4</sub><sup>+</sup>-N and NO<sub>3</sub><sup>−</sup>-N contents, increased the content of soil microbial biomass carbon (MBC), microbial biomass nitrogen (MBN) and soil enzymatic activities, such as the 100 μmol·L<sup>−1</sup> NO treatment increased 4.71 %, 7.45 %, 18.44 % and 29.46 % of the soil pH, EC, the content of NO<sub>3</sub><sup>−</sup>-N and NH<sub>4</sub><sup>+</sup>-N as compared to Cd stress alone under 50 mg·kg<sup>−1</sup> Cd concentrations, respectively. Meanwhile, in Cd alone treatment, the soil bacterial diversity indexes were slightly increased, while the fungal diversity slightly decreased at low Cd concentrations and increased at high Cd level compared with no Cd addition groups. After NO addition, the soil bacterial and fungal diversity was enhanced compared to without NO addition. Exogenous NO treatment also significantly changed the structures of soil bacterial and fungal communities, and increased the relative abundance of soil beneficial microbial communities. Furthermore, interactions among soil environmental factors and NO addition significantly influenced dominant bacterial, and fungal taxa. These results provide proof that soil remediation with exogenous NO addition may be an effective method to improve soil microenvironment and enhance plant tolerance to metal stress.</div></div>","PeriodicalId":34736,"journal":{"name":"Plant Stress","volume":"19 ","pages":"Article 101221"},"PeriodicalIF":6.8,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145925241","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-01DOI: 10.1016/j.stress.2025.101189
Fazeelat Karamat , Alexander Vergara , Jeanette Blomberg , Tim Crawford , Nóra Lehotai , Matilda Rentoft , Åsa Strand , Stefan Björklund
Environmental changes trigger stress responses in living organisms. Although the underlying mechanisms are only partly understood, they involve intricate signaling pathways and transcription factors (TFs). Mediator is a conserved co-regulator complex required for transcriptional regulation of all eukaryotic protein-encoding genes. However, its function in abiotic stress responses is elusive. Here, we describe global gene expression changes induced by salt stress in Arabidopsis thaliana. To investigate the involvement of Mediator, we analyzed med9, med16, med18, and cdk8 mutants, each representing one of the four Mediator modules. Our results demonstrate that promoters of differentially expressed genes (DEGs) for each mutant are enriched for binding sites of specific TFs. Phenotypic analyses further support the transcriptomic data: med16 and med18, and to a lesser extent cdk8, exhibit defects typical to mutations that affect abscisic acid and anthocyanin metabolism and we identify dysregulated signaling molecules, TFs, and target genes in these pathways. Our results reveal how signals from different stress response pathways are dependent on, and integrated by, Mediator subunits to coordinate a functional response to salt stress.
{"title":"Arabidopsis mutants for Mediator Head, Middle, Tail, and Kinase modules reveal distinct roles in regulating the transcriptional response to salt stress","authors":"Fazeelat Karamat , Alexander Vergara , Jeanette Blomberg , Tim Crawford , Nóra Lehotai , Matilda Rentoft , Åsa Strand , Stefan Björklund","doi":"10.1016/j.stress.2025.101189","DOIUrl":"10.1016/j.stress.2025.101189","url":null,"abstract":"<div><div>Environmental changes trigger stress responses in living organisms. Although the underlying mechanisms are only partly understood, they involve intricate signaling pathways and transcription factors (TFs). Mediator is a conserved co-regulator complex required for transcriptional regulation of all eukaryotic protein-encoding genes. However, its function in abiotic stress responses is elusive. Here, we describe global gene expression changes induced by salt stress in <em>Arabidopsis thaliana</em>. To investigate the involvement of Mediator, we analyzed <em>med9, med16, med18</em>, and <em>cdk8</em> mutants, each representing one of the four Mediator modules. Our results demonstrate that promoters of differentially expressed genes (DEGs) for each mutant are enriched for binding sites of specific TFs. Phenotypic analyses further support the transcriptomic data: <em>med16</em> and <em>med18</em>, and to a lesser extent <em>cdk8</em>, exhibit defects typical to mutations that affect abscisic acid and anthocyanin metabolism and we identify dysregulated signaling molecules, TFs, and target genes in these pathways. Our results reveal how signals from different stress response pathways are dependent on, and integrated by, Mediator subunits to coordinate a functional response to salt stress.</div></div>","PeriodicalId":34736,"journal":{"name":"Plant Stress","volume":"19 ","pages":"Article 101189"},"PeriodicalIF":6.8,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145924645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-01DOI: 10.1016/j.stress.2026.101226
Ali Anwar , Chunfeng Chen , Caizhu Hu , Mengqing Chen , Mansour Ghorbanpour , Wei Su , Riyuan Chen , Shiwei Song
Salinity stress is a major obstacle that limits plant growth and productivity. However, plants possess robust defense mechanisms to mitigate its adverse effects. In this study, we found that overexpression of SlPSAN (photosystem I reaction center subunit N) conferred salt stress resistance in both yeast and tomato seedlings. The results showed that the T-DNA mutants were susceptible to salt stress, resulting in a significant decline in seed germination rates and root length in Arabidopsis. Overexpression of SlPSAN enhanced root and shoot fresh weights, as well as root and shoot dry weights, in tomato seedlings under salt stress. In contrast, knockout (psan1 and psan2) lines exhibited increased sensitivity to salt stress and a significant reduction in tomato seedling growth. Moreover, SlPSAN overexpression enhanced nutrient accumulation, chlorophyll content (Chl A, Chl B, Chl A+B, and carotenoids) and enhanced the activities of antioxidant enzymes (APX, SOD, POD, and CAT), while simultaneously decreasing the accumulation of ROS and MDA when compared with WT and knockout lines. Transcriptome analysis revealed that knockout of SlPSAN altered the enrichment of biological processes, including response to stimulus, immune system processes, and detoxification pathways, under salt stress in tomato. These findings suggested that SlPSAN positively regulates salt stress in tomato seedlings. This study unlocks an innovative research direction for identifying candidate genes for improving salinity stress tolerance and protecting horticultural crop production.
{"title":"Overexpression of SlPSAN promotes salinity stress tolerance in tomato seedlings","authors":"Ali Anwar , Chunfeng Chen , Caizhu Hu , Mengqing Chen , Mansour Ghorbanpour , Wei Su , Riyuan Chen , Shiwei Song","doi":"10.1016/j.stress.2026.101226","DOIUrl":"10.1016/j.stress.2026.101226","url":null,"abstract":"<div><div>Salinity stress is a major obstacle that limits plant growth and productivity. However, plants possess robust defense mechanisms to mitigate its adverse effects. In this study, we found that overexpression of <em>SlPSAN</em> (photosystem I reaction center subunit N) conferred salt stress resistance in both yeast and tomato seedlings. The results showed that the T-DNA mutants were susceptible to salt stress, resulting in a significant decline in seed germination rates and root length in Arabidopsis. Overexpression of <em>SlPSAN</em> enhanced root and shoot fresh weights, as well as root and shoot dry weights, in tomato seedlings under salt stress. In contrast, knockout (psan1 and psan2) lines exhibited increased sensitivity to salt stress and a significant reduction in tomato seedling growth. Moreover, <em>SlPSAN</em> overexpression enhanced nutrient accumulation, chlorophyll content (Chl A, Chl B, Chl A<em>+</em>B, and carotenoids) and enhanced the activities of antioxidant enzymes (APX, SOD, POD, and CAT), while simultaneously decreasing the accumulation of ROS and MDA when compared with WT and knockout lines. Transcriptome analysis revealed that knockout of <em>SlPSAN</em> altered the enrichment of biological processes, including response to stimulus, immune system processes, and detoxification pathways, under salt stress in tomato. These findings suggested that SlPSAN positively regulates salt stress in tomato seedlings. This study unlocks an innovative research direction for identifying candidate genes for improving salinity stress tolerance and protecting horticultural crop production.</div></div>","PeriodicalId":34736,"journal":{"name":"Plant Stress","volume":"19 ","pages":"Article 101226"},"PeriodicalIF":6.8,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145924728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}