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Effects of melatonin on ginseng leaf phenotypic and photosynthetic properties following chilling and freezing stress 褪黑激素对寒冷和冰冻胁迫下人参叶片表型和光合特性的影响
IF 6.8 Q1 PLANT SCIENCES Pub Date : 2024-09-15 DOI: 10.1016/j.stress.2024.100599
Deyue Su , Licai Du , Jianfeng Wang , Gang Li , Fan-li Kong
Spring frost damage is a significant natural disaster, which can lead to large-scale ginseng (Panax ginseng C. A. Mey) yield reduction. To determine chilling and freezing stress damage to ginseng, we designed an experiment using three-year-old potted ginseng plants. We simulated chilling (0 ± 0.3 ℃) and freezing (-2.5 ± 0.3 ℃, -5 ± 0.3 ℃) in an artificial room, with 16±2 ℃ of the room temperature at night as the control, to evaluate their physiological effects on ginseng leaf spectral reflectance, photosynthetic characteristics, and chlorophyll fluorescence parameters. We also investigated the mitigating effects of exogenous melatonin on ginseng leaves exposed to chilling and freezing stress. All ginseng leaves died under -5 ℃ freezing stress and the mortality rate reached 25∼57 % under -2.5 ℃ freezing stress, while no plants died under 0 ℃ chilling stress. After -2.5 ℃ and 0 ℃ stress, leaf spectral reflectance in the 750∼1000 nm band was significantly lower than the control; transpiration rate, net photosynthetic rate, intercellular CO2 concentration, and stomatal conductance decreased significantly compared with the control, and there was no significant change in recovery time. The Fv/Fm ratio and qp decreased after low-temperature stress, while NPQ increased. After one week of melatonin application, leaf spectral reflectance in the 600∼650 and 750∼1000 nm bands reflected significant differences between the effects of melatonin application and no application on ginseng leaf chlorophyll content and structure under freezing stress. Ginseng leaf net photosynthetic rate increased by 23.79 % and 4.48 %, while intercellular CO2 concentration increased by 33.49 and 11.83 % under stress at -2.5 °C and 0 °C. The ginseng leaf chlorophyll fluorescence parameter (Fv/Fm) recovered to 0.8 and above in one week after melatonin application, and qp decreased under -2.5 °C and 0 °C stress after melatonin application. Additionally, the NPQ values were 11.44 % and 4.6 % lower in -2.5+MT and 0+MT, respectively, compared to the treatment without MT applied. A sudden drop in temperature to 0 ℃ or even below caused ginseng plant growth inhibition, but melatonin application at a concentration of 100 nmol L−1 had certain mitigating effects on ginseng growth, which provides a theoretical basis and technical support for ginseng production.
春季冻害是一种严重的自然灾害,可导致人参(Panax ginseng C. A. Mey)大面积减产。为了确定寒冷和冰冻胁迫对人参造成的损害,我们设计了一个使用三年生盆栽人参植株的实验。我们模拟了人工室内的寒冷(0 ± 0.3 ℃)和冰冻(-2.5 ± 0.3 ℃,-5 ± 0.3 ℃),以夜间室温 16±2 ℃为对照,评估它们对人参叶片光谱反射率、光合特性和叶绿素荧光参数的生理影响。我们还研究了外源褪黑激素对人参叶片遭受寒冷和冰冻胁迫的缓解作用。人参叶片在-5 ℃冷冻胁迫下全部死亡,在-2.5 ℃冷冻胁迫下死亡率达到25∼57 %,而在0 ℃冷冻胁迫下没有植株死亡。在-2.5 ℃和0 ℃胁迫后,叶片在750∼1000 nm波段的光谱反射率显著低于对照;蒸腾速率、净光合速率、细胞间CO2浓度和气孔导度与对照相比显著下降,恢复时间无显著变化。低温胁迫后,Fv/Fm 比值和 qp 下降,而 NPQ 上升。施用褪黑素一周后,叶片光谱反射率在600∼650和750∼1000 nm波段上反映出施用褪黑素与不施用褪黑素对人参叶片叶绿素含量和结构的影响有显著差异。在-2.5 °C和0 °C胁迫下,人参叶片净光合速率分别增加了23.79%和4.48%,细胞间CO2浓度分别增加了33.49%和11.83%。施用褪黑激素一周后,人参叶片叶绿素荧光参数(Fv/Fm)恢复到0.8及以上,施用褪黑激素后,在-2.5 °C和0 °C胁迫下,qp下降。此外,与未施用褪黑激素的处理相比,-2.5+MT 和 0+MT 的 NPQ 值分别降低了 11.44 % 和 4.6 %。温度骤降至0 ℃甚至更低会抑制人参植株的生长,但施用浓度为100 nmol L-1的褪黑激素对人参的生长有一定的缓解作用,这为人参生产提供了理论依据和技术支持。
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引用次数: 0
Exogenous γ-aminobutyric acid enhanced salt-alkaline tolerance in mulberry trees through transcriptomic sequencing analysis 通过转录组测序分析外源γ-氨基丁酸增强桑树的耐盐碱能力
IF 6.8 Q1 PLANT SCIENCES Pub Date : 2024-09-14 DOI: 10.1016/j.stress.2024.100595
Luoling Yang, Zhiwei Hou, Chengyu Liu, Changrui Zhu, Yingting Qin, Xiling Wang

Soil salinization is a widespread abiotic stress in China and one of the most critical factors affecting agricultural production and food security. γ-Aminobutyric acid (GABA) is a non-protein amino acid widely found in vertebrates, plants, and microorganisms, regulating the nervous system as well as plant defense systems. Mulberry is rich in GABA and exhibits extensive adaptability to various environments. In this study, we explored the possibility of alleviating salinity and alkalinity stress in mulberry seedlings using GABA and elucidating the intrinsic mechanisms by which GABA enhances salt-alkaline tolerance in mulberry trees through transcriptomic sequencing analysis. The results showed that 1 mM exogenous GABA enhanced the activities of mulberry seeds under saline-alkali stress, significantly increased the activities of POD and CAT (P < 0.01), reduced the level of reactive oxygen species and the content of malondialdehyde in mulberry seedlings and facilitated the growth and development of adventitious roots of mulberry. Transcriptomic analysis showed that GABA promoted the development and growth of adventitious roots of mulberry under saline-alkali stress by regulating the synthesis and modification of the cell wall, phytohormone signal transduction, and the conversion of starch and monosaccharides. Furthermore, the expression of pathogen pattern recognition receptors on the cell membrane of mulberry root system cells increased, enhancing the defense ability of mulberry root system cells. It is suggested that MYB, PME, SBT, EXP, DIR, POD, and the ARR family of transcription factors could be used as the target genes for further in-depth research.

土壤盐碱化是中国普遍存在的非生物胁迫,也是影响农业生产和粮食安全的最关键因素之一。γ-氨基丁酸(GABA)是一种非蛋白氨基酸,广泛存在于脊椎动物、植物和微生物中,调节神经系统和植物防御系统。桑树富含 GABA,对各种环境具有广泛的适应性。本研究探索了利用 GABA 缓解桑苗盐碱胁迫的可能性,并通过转录组测序分析阐明了 GABA 增强桑树耐盐碱能力的内在机制。结果表明,1 mM外源GABA能增强盐碱胁迫下桑树种子的活性,显著提高POD和CAT的活性(P <0.01),降低桑苗体内活性氧水平和丙二醛含量,促进桑苗不定根的生长发育。转录组分析表明,GABA 通过调控细胞壁的合成和修饰、植物激素信号转导以及淀粉和单糖的转化,促进了盐碱胁迫下桑树不定根的发育和生长。此外,病原物模式识别受体在桑树根系细胞膜上的表达量增加,增强了桑树根系细胞的防御能力。建议将 MYB、PME、SBT、EXP、DIR、POD 和 ARR 家族转录因子作为目标基因,进一步深入研究。
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引用次数: 0
Calmodulin: Coping with biotic and abiotic stresses in soybean (Glycine max (L.) Merr.) 钙调蛋白应对大豆(Glycine max (L.) Merr.)的生物和非生物胁迫
IF 6.8 Q1 PLANT SCIENCES Pub Date : 2024-09-13 DOI: 10.1016/j.stress.2024.100602
Ayyagari Ramlal , Amooru Harika , V Jayasri , Sreeramanan Subramaniam , Bingi Pujari Mallikarjuna , Dhandapani Raju , S K Lal , Ambika Rajendran
Calcium is a ubiquitous and versatile secondary messenger that enables plant growth through various processes in response to abiotic and biotic stress factors. Plants are immobile and therefore constantly exposed to various environmental stimuli (drought, waterlogging, etc.) and microorganisms such as bacteria, fungi, and viruses resulting in large crop losses. Calmodulin (CaM) is an evolutionarily conserved calcium-binding protein and sensor that occurs in all eukaryotes and performs various functions under stress. CaM-binding proteins (CBPs) such as transcription factors, enzymes and channels are involved in responses to environmental stress. Plants have evolved a sophisticated innate immune system to fight infections, commonly referred to as pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI) and effector-triggered immunity (ETI). Soybean is an economically important legume crop that is constantly confronted with various pests and pathogens, resulting in significant yield and production losses. The article highlights the functions of calmodulin in soybean during biotic (soybean-microbe pathogenesis) and abiotic (soybean-environment) interactions in the light of currently available knowledge on the subject. It also describes the new paradigms in this field, emphasising the need for further investigation and providing up-to-date information on the most plausible approaches to combat this challenge for commercial use.
钙是一种无处不在、用途广泛的次级信使,可通过各种过程对非生物和生物胁迫因素做出反应,促进植物生长。植物无法移动,因此经常暴露在各种环境刺激(干旱、水涝等)和微生物(如细菌、真菌和病毒)的影响下,造成大量作物损失。钙调蛋白(CaM)是一种进化保守的钙结合蛋白和传感器,存在于所有真核生物中,在压力下发挥各种功能。CaM 结合蛋白(CBPs),如转录因子、酶和通道,参与了对环境胁迫的反应。植物进化出了复杂的先天免疫系统来对抗感染,通常称为病原体相关分子模式(PAMP)触发免疫(PTI)和效应器触发免疫(ETI)。大豆是一种具有重要经济价值的豆科作物,经常受到各种害虫和病原体的侵袭,造成严重的产量和生产损失。文章根据现有的相关知识,重点介绍了大豆中的钙调素在生物(大豆-微生物致病机理)和非生物(大豆-环境)相互作用过程中的功能。文章还介绍了这一领域的新范例,强调了进一步研究的必要性,并提供了有关应对这一挑战的商业用途的最合理方法的最新信息。
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引用次数: 0
Enhancing salinity stress tolerance in corn salad (Valerianella locusta L.) through melatonin or salicylic acid-functionalized chitosan seed priming: A smart delivery approach 通过褪黑素或水杨酸功能化壳聚糖种子引物增强玉米沙拉(Valerianella locusta L.)的耐盐碱胁迫能力:一种智能输送方法
IF 6.8 Q1 PLANT SCIENCES Pub Date : 2024-09-13 DOI: 10.1016/j.stress.2024.100600
Gholamreza Gohari , Muhittin Kulak , Egli C. Georgiadou , Andreas Ioannou , Sima Panahirad , Roghayeh Mahmoudi , Alexandros Spanos , Mehmet Zeki Kocak , Georgia Ntatsi , Vasileios Fotopoulos

Soil salinity represents a significant environmental stressor that impairs crop production and yield. A wide range of treatments have been used to reduce the effects of salinity in plants. Among the treatments used, functionalized nanoparticles (NPs) have shown great results. In light of recently demonstrated beneficial effects of chitosan-melatonin nanoparticles (CTS-Mel NPs) and chitosan-salicylic acid nanoparticles (CTS-SA NPs) in mitigating the deleterious consequences of major stress factors and boosting secondary metabolite biosynthesis, the current study aimed to investigate their potential as seed priming coatings to enhance plant performance under both control and salinity stress conditions. For this purpose, CTS (0.1% w/v), Mel (50 µM), SA (0.5 mM), CTS-Mel NPs and CTS-SA NPs were applied as seed priming agents on corn salad (Valerianella locusta) seeds, and subsequently key morphophysiological and biochemical properties were assayed under salinity conditions (0, 30 and 60 mM NaCl). Accordingly, salinity stress caused significant reduction in fresh and dry weights (FW and DW) of leaves, chl a, total chl, SPAD and enhancement in content of proline, phenolics, MDA, as well as protein content, and activities of SOD and CAT antioxidant enzymes. Concerning the phenolic compounds analyzed, salinity stress did not affect the dominant phenolic constituents with the exception of naringine. Regarding the protective effects of the various priming treatments, the adverse effects of salinity stress were ameliorated with the application of most of the applied treatments, and with CTS-Mel NPs in particular, by enhancing biomass, pigments, total phenols, protein, SOD and CAT antioxidant enzymatic activities, as well as the content of some dominant constituents of phenolic profile. CTS-Mel NPs enhanced chlorogenic acid, naringine, o-coumaric acid and catechin hydrate under both control and salinity conditions. Overall, CTS-Mel NPs outperformed CTS-SA NPs as a seed priming coating and could potentially be widely introduced as an innovative, sustainable approach to mitigate the effects of salinity and other abiotic stress conditions in crop plants.

土壤盐分是一种重要的环境胁迫因素,会损害作物的产量和品质。为减少盐分对植物的影响,人们采用了多种处理方法。在这些处理方法中,功能化纳米粒子(NPs)显示出了很好的效果。鉴于最近证明壳聚糖-褪黑素纳米颗粒(CTS-Mel NPs)和壳聚糖-水杨酸纳米颗粒(CTS-SA NPs)在减轻主要胁迫因子的有害影响和促进次生代谢物生物合成方面的有益作用,本研究旨在调查它们作为种子底涂层的潜力,以提高植物在对照和盐度胁迫条件下的表现。为此,研究人员将 CTS(0.1% w/v)、Mel(50 µM)、SA(0.5 mM)、CTS-Mel NPs 和 CTS-SA NPs 用作玉米沙拉(Valerianella locusta)种子的引诱剂,随后在盐度条件(0、30 和 60 mM NaCl)下检测了其关键的形态生理和生化特性。结果表明,盐胁迫显著降低了叶片的鲜重和干重(FW 和 DW)、叶绿素 a、总叶绿素、SPAD,提高了脯氨酸、酚类化合物、MDA 的含量、蛋白质含量以及 SOD 和 CAT 抗氧化酶的活性。在酚类化合物分析方面,除了柚皮苷之外,盐胁迫对主要酚类成分没有影响。关于各种先导处理的保护作用,大多数先导处理,特别是 CTS-Mel NPs,通过提高生物量、色素、总酚、蛋白质、SOD 和 CAT 抗氧化酶活性以及酚类概况中一些主要成分的含量,改善了盐胁迫的不利影响。在对照和盐度条件下,CTS-Mel NPs 都能提高绿原酸、柚皮碱、邻香豆素和儿茶素水合物的含量。总之,CTS-Mel NPs 作为种子底层包衣的效果优于 CTS-SA NPs,有可能作为一种创新的、可持续的方法被广泛引入,以减轻盐分和其他非生物胁迫条件对作物植物的影响。
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引用次数: 0
Functional phenomics and genomics: Unravelling heat stress responses in wheat 功能表型组学和基因组学:揭示小麦的热胁迫反应
IF 6.8 Q1 PLANT SCIENCES Pub Date : 2024-09-12 DOI: 10.1016/j.stress.2024.100601
Md. Omar Kayess , Md. Ashrafuzzaman , Md. Arifur Rahman Khan , Md. Nurealam Siddiqui

Heat stress severely impacts wheat production by altering morpho-physiological traits, disrupting cellular physiological and biochemical attributes, and ultimately affecting the genetic makeup of the plant. Heat affects the thermosensitive traits of the vegetative and reproductive stages of wheat. Therefore, it is imperative to employ precise and expedite trait-based phenotyping as well genomics tools and crop breeding approaches to develop heat tolerant wheat cultivars. While trait-based breeding has been a time-consuming approach, it faces numerous challenges due to the labour-intensive, expensive, less accurate, environment-specific, and time-consuming process of screening, particularly for large numbers of genotypes. Nevertheless, recent breakthroughs in functional phenotyping, a platform that offers valuable insights into the dynamic responses of plants to heat stress. Conversely, functional genomics investigates genetic and epigenetic systems to identify and pinpoint gene variations related to specific traits. Therefore, this review summarizes heat stress effects on wheat at morphological, physiological and biochemical levels. Further, we highlight the potential of functional phenotyping that can rapidly detect wheat's physiological aspects in response to hot spells. We then finally highlight cutting-edge breeding strategies for enhancing heat tolerance in wheat, emphasizing an integrated approach that combines phenomics and genomics tools.

热胁迫会改变小麦的形态生理特征,破坏细胞的生理生化特性,并最终影响植物的基因构成,从而严重影响小麦的产量。热影响小麦无性和生殖阶段的热敏性状。因此,必须采用精确、快速的基于性状的表型分析以及基因组学工具和作物育种方法来培育耐热小麦品种。虽然基于性状的育种一直是一种耗时的方法,但由于筛选过程(尤其是大量基因型的筛选)劳动密集、成本高昂、准确性较低、环境特异性差且耗时,因此面临着诸多挑战。不过,功能表型技术最近取得了突破性进展,这一平台为深入了解植物对热胁迫的动态反应提供了宝贵的资料。相反,功能基因组学研究遗传和表观遗传系统,以识别和确定与特定性状相关的基因变异。因此,本综述总结了热胁迫在形态、生理和生化水平上对小麦的影响。此外,我们还强调了功能性表型的潜力,这种表型可以快速检测小麦生理方面对热应激的反应。最后,我们重点介绍了提高小麦耐热性的前沿育种策略,强调了结合表型组学和基因组学工具的综合方法。
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引用次数: 0
Transcriptome profiling reveals insight into the cold response of perennial ryegrass genotypes with contrasting freezing tolerance 转录组特征分析揭示了耐寒性截然不同的多年生黑麦草基因型对寒冷的反应
IF 6.8 Q1 PLANT SCIENCES Pub Date : 2024-09-12 DOI: 10.1016/j.stress.2024.100598
Akhil Reddy Pashapu , Gražina Statkevičiūtė , Ferenz Sustek-Sánchez , Mallikarjuna Rao Kovi , Odd Arne Rognli , Cecilia Sarmiento , Nils Rostoks , Kristina Jaškūnė

Low freezing tolerance threatens the survival and productivity of perennial ryegrass under northern climate. In this study, we aimed to identify transcriptional changes in plants subjected to low and freezing temperatures as well as to elucidate differences between tolerant and sensitive genotypes. Response to freezing stress was evaluated in a panel of 160 perennial ryegrass genotypes by measuring electrolyte leakage after exposure to -12 °C and -14 °C for 24 h. Two tolerant and two sensitive genotypes were selected for the transcriptome analysis. Crown tissue samples were collected at six treatments: before the start of cold acclimation (control point), at the start of acclimation, after one week of acclimation, after three weeks of acclimation, after freezing at -5 °C and freezing at -10 °C. A total of 11,125 differentially expressed genes (DEGs) were identified in the sensitive and 12,937 DEGs in the tolerant genotypes, when comparing the control vs. each of the acclimation and freezing treatments, as well as the end of acclimation vs. freezing treatments. Among the identified DEGs 3323 were unique to the sensitive genotypes, 5135 were unique to the tolerant genotypes and 7802 were shared. Genes upregulated during cold acclimation and freezing stress were linked to the MAPK signalling pathway, circadian rhythm, starch and sucrose metabolism, plant-pathogen interaction, carbon fixation, alpha-linoleic acid metabolism, carotenoid metabolism, glyoxylate and dicarboxylate metabolism pathways. Downregulated genes were linked to ATP-dependent chromatin remodelling, fatty acid elongation and DNA replication. The downregulation of fatty acid elongation and glutathione metabolism DEGs could indicate that the studied genotypes respond to cold stress in a novel or not yet well-characterized manner.

低耐寒性威胁着北方气候下多年生黑麦草的生存和产量。在这项研究中,我们旨在确定植物在低温和冰冻条件下的转录变化,并阐明耐受基因型和敏感基因型之间的差异。通过测量暴露在-12 °C和-14 °C温度下24小时后的电解质渗漏情况,评估了160种多年生黑麦草基因型对冷冻胁迫的响应。在六个处理中采集了冠组织样本:冷适应开始前(对照点)、冷适应开始时、冷适应一周后、冷适应三周后、-5 °C冷冻后和-10 °C冷冻后。在比较对照与每种适应和冷冻处理,以及适应结束与冷冻处理时,在敏感基因型和耐受基因型中分别发现了 11 125 个和 12 937 个差异表达基因(DEGs)。在已识别的 DEGs 中,3323 个为敏感基因型所独有,5135 个为耐受基因型所独有,7802 个为共享基因。冷适应和冷冻胁迫期间上调的基因与 MAPK 信号通路、昼夜节律、淀粉和蔗糖代谢、植物与病原体的相互作用、碳固定、α-亚油酸代谢、类胡萝卜素代谢、乙醛酸和二羧酸代谢通路有关。下调的基因与 ATP 依赖性染色质重塑、脂肪酸伸长和 DNA 复制有关。脂肪酸伸长和谷胱甘肽代谢 DEGs 的下调可能表明,所研究的基因型以一种新的或尚未很好描述的方式对冷胁迫做出反应。
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引用次数: 0
Phenotyping for heat stress tolerance in wheat population using physiological traits, multispectral imagery, and machine learning approaches 利用生理特征、多光谱图像和机器学习方法对小麦群体的热胁迫耐受性进行表型分析
IF 6.8 Q1 PLANT SCIENCES Pub Date : 2024-09-12 DOI: 10.1016/j.stress.2024.100593
Neelesh Sharma , Manu Kumar , Hans D Daetwyler , Richard M Trethowan , Matthew Hayden , Surya Kant

Heat stress is a critical environmental factor that adversely affects crop productivity. With the increasing frequency and intensity of heat waves and extreme weather events, heat stress has become a challenge for wheat production, which is one of the most important cereal crops. To sustain wheat production under heat stress conditions, there is an urgent need to develop high-yielding, heat-tolerant wheat varieties. This requires characterizing the genetic and physiological mechanisms underlying heat tolerance, as well as developing efficient phenotyping methods to evaluate a large number of wheat genotypes under heat stress field conditions. In this study, we used 184 wheat genotypes that were sown at two times of sowing (TOS), i.e., optimal sowing as TOS1 and late sowing as TOS2, with higher temperatures faced by plants during heading and grain filling in TOS2. We used a combination of physiological traits, multispectral vegetative indices (VIs) derived from aerial imagery and machine learning approaches to effectively differentiate wheat genotypes for heat tolerance and susceptibility. The response of wheat genotypes to heat stress was delineated as being susceptible, moderate, and tolerant using the stress susceptibility index, percentage loss, and tolerance index. Different VIs varied significantly between the two TOS. The decline in VIs during anthesis and post-anthesis was minimal in heat tolerant genotypes compared to susceptible genotypes under TOS2. We classified the stress severity and yield using VIs with a machine learning approach. A model was created with a random forest classifier (RFC) trained to categorize genotypes based on the stress susceptibility index using Python libraries. The PCA was utilized to reduce dimensionality, and five principal components explaining 99 % of the variability were employed as input for developing the model. The RFC model achieved an accuracy of 64 % and excelled in recognizing crops under extreme stress, with a recall rate of 0.87 and an F1 score of 0.77 for the susceptible class. The model had high precision metrics, with values of 0.69, 0.42, and 0.80 for the susceptible, moderate, and tolerant classes, respectively. Our results suggest that multispectral-driven phenotypic traits can be used by breeders to select and develop wheat varieties tolerant to heat stress.

热胁迫是对作物生产力产生不利影响的一个关键环境因素。随着热浪和极端天气事件的频率和强度不断增加,热胁迫已成为小麦生产面临的一项挑战,而小麦是最重要的谷类作物之一。为了在热胁迫条件下维持小麦生产,迫切需要培育高产、耐热的小麦品种。这就需要鉴定耐热性的遗传和生理机制,并开发高效的表型鉴定方法,以评估热胁迫田间条件下的大量小麦基因型。在这项研究中,我们使用了 184 个小麦基因型,这些基因型在两个播种时间(TOS)播种,即最佳播种时间为 TOS1,晚播时间为 TOS2,在 TOS2 中,植物在打顶和籽粒灌浆期间面临更高的温度。我们结合使用了生理性状、从航空图像中获得的多光谱植被指数(VIs)和机器学习方法,以有效区分小麦基因型的耐热性和感热性。利用胁迫易感性指数、损失百分比和耐受性指数将小麦基因型对热胁迫的反应划分为易感、中等和耐受。不同的VIs在两个TOS之间差异显著。与 TOS2 下的易感基因型相比,耐热基因型在花期和花后的 VIs 下降幅度最小。我们采用机器学习方法,利用VIs对胁迫严重程度和产量进行了分类。我们使用 Python 库创建了一个随机森林分类器 (RFC) 模型,根据胁迫敏感性指数对基因型进行分类。利用 PCA 来降低维度,并将解释了 99% 变异性的五个主成分作为建立模型的输入。RFC 模型的准确率达到 64%,在识别极端胁迫下的作物方面表现出色,易感类别的召回率为 0.87,F1 得分为 0.77。该模型的精确度指标较高,易感、中等和耐受类别的精确度分别为 0.69、0.42 和 0.80。我们的研究结果表明,育种者可以利用多光谱驱动的表型性状来选育耐热胁迫的小麦品种。
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引用次数: 0
Application of artificial intelligence techniques to addressing and mitigating biotic stress in paddy crop: A review 应用人工智能技术应对和减轻水稻作物的生物胁迫:综述
IF 6.8 Q1 PLANT SCIENCES Pub Date : 2024-09-12 DOI: 10.1016/j.stress.2024.100592
Shubhika Shubhika , Pradeep Patel , Rickwinder Singh , Ashish Tripathi , Sandeep Prajapati , Manish Singh Rajput , Gaurav Verma , Ravish Singh Rajput , Nidhi Pareek , Ganesh Dattatraya Saratale , Aakash Chawade , Kamlesh Choure , Vivekanand Vivekanand

Agriculture provides basic livelihood for a large section of world's population. It is the oldest economic activity in India, with two third of Indian population involved in crop production. India is second largest producer of rice and biggest exporter globally, with rice which is most common staple crop consumed in country. However, there are several challenges for paddy production including small production yield, soil quality, seed quality, huge volume of water needed and biotic stress. Of these, biotic stress drastically affects yield and susceptibility to other diseases in paddy production. It is caused by pathogens such as bacteria, viruses, fungi, nematodes, all of which severely affect growth and productivity of paddy crop. To mitigate these challenges, infected crops are identified, detected, classified, categorized, and prevented according to their respective suffering disease by using conventional methods which are not effective and efficient for growth of paddy crop. Thus, use of artificial intelligence (AI) and a smart agriculture-based Internet of Things (IoT) platform could be effective for detecting the biotic stresses in very less time or online mode. For this, deep learning, and convolutional neural networks (CNN) multi-structured layer approach were used for diagnosing disease in rice plants. Different models and classifiers of CNN were used for detecting disease by processing high-spectral images and using logistic and mathematical formulation methods for classification of biotic paddy crop stresses. Continuous monitoring of stages of infection in paddy crop can be achieved using real-time data. Thus, use of AI has made diagnosing paddy crop diseases much easier and more efficient.

农业为世界上大部分人口提供基本生计。农业是印度最古老的经济活动,印度有三分之二的人口从事农作物生产。印度是全球第二大大米生产国和最大的出口国,大米是印度最常见的主食作物。然而,水稻生产面临着一些挑战,包括产量低、土壤质量、种子质量、所需水量大和生物胁迫。其中,生物胁迫会严重影响产量和对水稻生产中其他病害的易感性。它是由细菌、病毒、真菌、线虫等病原体引起的,所有这些病原体都会严重影响水稻作物的生长和产量。为了减轻这些挑战,人们使用传统方法对受感染的作物进行识别、检测、分类、归类,并根据各自的病害进行预防,但这些方法对水稻作物的生长并不有效。因此,使用人工智能(AI)和基于智能农业的物联网(IoT)平台可以有效地在极短的时间内或在线模式下检测生物压力。为此,我们采用了深度学习和卷积神经网络(CNN)多结构层方法来诊断水稻植株的病害。通过处理高光谱图像,使用不同的 CNN 模型和分类器检测病害,并使用逻辑和数学公式方法对水稻作物生物胁迫进行分类。利用实时数据可以实现对水稻作物感染阶段的连续监测。因此,人工智能的使用使水稻作物病害的诊断变得更加容易和高效。
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引用次数: 0
Exogenous application of silica nanoparticles mitigates combined salt and low-temperature stress in cotton seedlings by improving the K+/Na+ ratio and antioxidant defense 通过改善 K+/Na+ 比率和抗氧化防御,外源施用纳米二氧化硅可减轻棉花幼苗的盐和低温联合胁迫
IF 6.8 Q1 PLANT SCIENCES Pub Date : 2024-09-11 DOI: 10.1016/j.stress.2024.100597
Yueping Liang , Hao Liu , Yingying Zhang , Penghui Li , Yuanyuan Fu , Shuang Li , Yang Gao

Silica nanoparticles (SiO2-NPs) have been demonstrated to alleviate the adverse impacts of salt or low temperature on crop growth, especially for individual stress. The aim of this study was to elucidate the regulatory effect of SiO2-NPs on plant performance under combined salt and low-temperature stress. Therefore, a phytotron experiment was performed to explore the effects of SiO2-NPs application (0, 50, 100, 200 mg L−1) on the plant growth, ionic content, antioxidant activities, photosynthetic parameters, and osmoregulator concentrations of cotton seedlings subjected to the combined stress of salinity (50, 100, and 150 mmol L−1 NaCl) and low temperature (day and night temperatures of 15 and 10 °C). The results indicated that the combinatorial stress strongly decreased the plant height and leaf area of cotton seedlings, and obviously suppressed the aboveground biomass by 10.26 %, 11.42 %, and 15.70 % with the increase in salinity. While SiO2-NPs application significantly increased the plant growth, photosynthetic rate, transpiration rate, stomatal conductance, superoxide dismutase, catalase and glutathione reductase activities, leaf water potential, K+, and proline contents, and reduced the Na+ content and Na+/K+ ratio of cotton seedlings under the combinatorial stress. However, the effects of SiO2-NPs on reduced glutathione, total soluble sugar and protein content, and peroxidase activity did not exhibit a clear pattern. The aboveground biomass of cotton seedlings subjected to the combinatorial stress was closely correlated with the Na+/K+ ratio, Na+ content, K+ content, proline content, SOD activity, and CAT activity, indicating that SiO2-NPs could alleviate the suppression of combinatorial stress on cotton seedling growth by decreasing the Na+/K+ ratio and increasing the antioxidant capacity.

二氧化硅纳米颗粒(SiO2-NPs)已被证明可减轻盐或低温对作物生长的不利影响,尤其是对单个胁迫的影响。本研究旨在阐明 SiO2-NPs 在盐和低温联合胁迫下对植物表现的调节作用。因此,本研究进行了一项植物试验,以探讨施用 SiO2-NPs(0、50、100、200 mg L-1)对受到盐度(50、100 和 150 mmol L-1 NaCl)和低温(昼夜温度分别为 15 和 10 °C)联合胁迫的棉花幼苗的植物生长、离子含量、抗氧化活性、光合参数和渗透调节剂浓度的影响。结果表明,随着盐度的增加,棉花幼苗的株高和叶面积显著下降,地上生物量也明显减少,降幅分别为 10.26 %、11.42 % 和 15.70 %。施用 SiO2-NPs 能显著提高组合胁迫下棉花幼苗的植株生长、光合速率、蒸腾速率、气孔导度、超氧化物歧化酶、过氧化氢酶和谷胱甘肽还原酶活性、叶片水势、K+ 和脯氨酸含量,降低 Na+ 含量和 Na+/K+ 比率。然而,SiO2-NPs 对还原型谷胱甘肽、总可溶性糖和蛋白质含量以及过氧化物酶活性的影响并不明显。组合胁迫下棉花幼苗的地上生物量与 Na+/K+ 比率、Na+ 含量、K+ 含量、脯氨酸含量、SOD 活性和 CAT 活性密切相关,表明 SiO2-NPs 可通过降低 Na+/K+ 比率和提高抗氧化能力来缓解组合胁迫对棉花幼苗生长的抑制作用。
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引用次数: 0
Validation and identification of new QTLs for plant and fruit developmental and composition traits in eggplant under low N conditions 验证和鉴定低氮条件下茄子植株和果实发育及组成性状的新 QTLs
IF 6.8 Q1 PLANT SCIENCES Pub Date : 2024-09-11 DOI: 10.1016/j.stress.2024.100594
Gloria Villanueva, Santiago Vilanova, Mariola Plazas, Pietro Gramazio, Jaime Prohens

Enhancing plant adaptation to low input conditions is a fundamental goal for implementing sustainable agriculture. In the present study, two eggplant (Solanum melongena) accessions (MEL1 and MEL5), two introgression lines (ILs) derived from eggplant wild relatives S. dasyphyllum (IL-M1-D1) and S. insanum (IL-M5-I9), and a heterozygous version of this last IL (ILHet-M5-I9), along with hybrids among them were evaluated under low N (LN) conditions. IL-M1-D1 carries an introgressed fragment of 4.9 Mb in homozygosis from S. dasyphyllum on chromosome 2, while IL-M5-I9 and ILHet-M5-I9 carry an introgression of 21.5 Mb on chromosome 9 in homozygosis and heterozygosis, respectively, from S. insanum. Multiple quantitative trait loci (QTLs) for several traits of interest were associated with both introgressions under LN conditions in a previous study with segregating advanced backcrosses. Here we evaluated the performance of these materials for 22 agronomic and developmental traits under low N fertilization (LN) conditions. Hybrids with the ILs enabled the study of genetic background effects on QTLs expression. The materials evaluated showed a significant phenotypic variation, particularly within hybrids segregating for the introgression from S. insanum in chromosome 9. Statistical analysis revealed no significant differences among hybrids carrying or not the introgression on chromosome 2 of S. dasyphyllum, and only slight differences were observed between the IL-M1-D1 and its recurrent parent S. melongena MEL1, suggesting a limited impact of this introgression on chromosome 2 on the phenotype variation. However, the differences observed between IL-M5-I9 and its recurrent parent S. melongena MEL5, together with the association between genotypic and phenotypic variation in hybrids segregating for this introgression, allowed the identification of 13 QTLs on chromosome 9. These results successfully validated the previously identified QTLs for flavonol content in leaves, nitrogen balanced index, fruit mean weight, and nitrogen content in leaves and, also revealed nine new QTLs associated with the introgressed genomic region in chromosome 9. This study emphasizes the influence of environmental conditions, genotypes, and genetic backgrounds on the phenotypic expression of eggplant QTLs introgressed from wild relatives and highlights the importance of QTL validation. These findings contribute valuable insights for developing new eggplant cultivars for a more sustainable agriculture, particularly with adaptation to LN conditions.

提高植物对低投入条件的适应性是实施可持续农业的一个基本目标。本研究在低氮条件下评估了两个茄子(Solanum melongena)登录品系(MEL1 和 MEL5)、两个来自茄子野生近缘种 S. dasyphyllum(IL-M1-D1)和 S. insanum(IL-M5-I9)的引入系(IL)、最后一个引入系的杂合型(ILHet-M5-I9)以及它们之间的杂交种。IL-M1-D1 带有从 S. dasyphyllum 的 2 号染色体上同源引入的 4.9 Mb 片段,而 IL-M5-I9 和 ILHet-M5-I9 则分别从 S. insanum 的 9 号染色体上同源和异源引入了 21.5 Mb 片段。在之前的一项研究中,在LN条件下,多个相关性状的多个数量性状位点(QTLs)与这两个导入基因相关,并进行了先进的分离回交。在此,我们评估了这些材料在低氮肥(LN)条件下的 22 个农艺性状和发育性状的表现。通过与 ILs 杂交,研究了遗传背景对 QTLs 表达的影响。所评估的材料表现出显著的表型差异,特别是在第 9 号染色体上从 S. insanum 引入的杂交种中。统计分析表明,携带或不携带 S. dasyphyllum 第 2 号染色体上引物的杂交种之间没有明显差异,IL-M1-D1 与其复交亲本 S. melongena MEL1 之间也只有轻微差异,这表明第 2 号染色体上的引物对表型变化的影响有限。然而,IL-M5-I9 与其复交亲本 S. melongena MEL5 之间观察到的差异,以及因这一引入而分离的杂交种的基因型和表型变异之间的关联,使得在第 9 号染色体上鉴定出 13 个 QTLs 成为可能。这些结果成功验证了之前鉴定出的叶片中黄酮醇含量、氮平衡指数、果实平均重量和叶片中氮含量的 QTLs,同时还揭示了与 9 号染色体上的导入基因组区域相关的 9 个新 QTLs。这项研究强调了环境条件、基因型和遗传背景对从野生近缘植物中导入的茄子 QTL 表型表达的影响,并突出了 QTL 验证的重要性。这些发现为开发新的茄子栽培品种,尤其是适应低氮条件的栽培品种,以实现更可持续的农业发展提供了有价值的见解。
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引用次数: 0
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Plant Stress
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