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Exogenous expression of both matrix protein and glycoprotein facilitates infectious viral particle production of Borna disease virus 1. 基质蛋白和糖蛋白的外源表达促进了博纳病病毒1号的感染性病毒颗粒的产生。
IF 3.8 Pub Date : 2022-07-01 DOI: 10.1099/jgv.0.001767
Takehiro Kanda, Madoka Sakai, Akiko Makino, Keizo Tomonaga

Borna disease virus 1 (BoDV-1) is a non-segmented, negative-strand RNA virus that is characterized by persistent infection in the nucleus and low production of progeny virions. This feature impedes not only the harvesting of infectious viral particles from infected cells but also the rescue of high titres of recombinant BoDV-1 (rBoDV-1) by reverse genetics. Here, we demonstrate that exogenous expression of both matrix protein (M) and glycoprotein (G), which are constituents of the viral lipid envelope, significantly facilitates the formation of infectious particles and propagation of BoDV-1 without affecting its viral RNA synthesis. Furthermore, simultaneous transfection of M and G expression plasmids with N, P and L helper plasmids by reverse genetics drastically enhances the rescue efficiency of rBoDV-1. On the other hand, we also show that overexpression of M induces obvious cytotoxicity similar to that of other Mononegaviruses. Together with our recent report showing that excess expression of G induces aberrant accumulation of immature G, a potential stimulator of the host innate immune response, it is conceivable that BoDV-1 may suppress excess expression of M and G to reduce the cytopathic effect, thereby leading to maintenance of persistent infection. Our results contribute not only to the establishment of an efficient method to recover high-titre BoDV-1 but also to understanding the unique mechanism of persistent BoDV-1 infection.

博纳病病毒1 (BoDV-1)是一种非分节的负链RNA病毒,其特点是在细胞核中持续感染和低子代病毒粒子的产生。这一特性不仅阻碍了从感染细胞中收集感染性病毒颗粒,而且也阻碍了通过反向遗传学来拯救高滴度的重组BoDV-1 (rBoDV-1)。在这里,我们证明了作为病毒脂质包膜成分的基质蛋白(M)和糖蛋白(G)的外源表达显著促进了BoDV-1感染颗粒的形成和繁殖,而不影响其病毒RNA的合成。此外,通过反向遗传同时转染M和G表达质粒与N、P和L辅助质粒,可以显著提高rBoDV-1的拯救效率。另一方面,我们也发现M的过表达诱导了与其他单细胞病毒类似的明显的细胞毒性。我们最近的报告显示,G的过度表达诱导未成熟G的异常积累,这是宿主先天免疫反应的潜在刺激物,可以想象BoDV-1可能抑制M和G的过度表达以减少细胞病变作用,从而导致持续感染的维持。我们的研究结果不仅有助于建立一种有效的方法来恢复高滴度BoDV-1,而且有助于理解持续BoDV-1感染的独特机制。
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引用次数: 1
Mice immunized with trimethyl chitosan nanoparticles containing DENV-2 envelope domain III elicit neutralizing antibodies with undetectable antibody-dependent enhancement activity. 用含有DENV-2包膜结构域III的三甲基壳聚糖纳米颗粒免疫小鼠,可产生具有不可检测的抗体依赖性增强活性的中和抗体。
IF 3.8 Pub Date : 2022-07-01 DOI: 10.1099/jgv.0.001768
Mathurin Seesen, Tuksin Jearanaiwitayakul, Jitra Limthongkul, Panya Sunintaboon, Sukathida Ubol

Dengue is a disease that poses a significant global public health concern. Although a tetravalent live-attenuated dengue vaccine has been licensed, its efficacy is still debated due to evidence of vaccine breakthrough infection. To avoid this issue, dengue vaccines should stimulate a high degree of serotype-specific response. Thus, envelope domain III (EDIII), which contains serotype-specific neutralizing epitopes, is an attractive target for dengue vaccine development. In this study, we investigated how EDIII encapsidated in N, N, N-trimethyl chitosan chloride nanoparticles (TMC NPs) stimulates a serotype-specific response and whether this response exerts a potential in vitro breakthrough infection. The immune response to DENV-2 elicited by EDIII TMC NP-immunized mice was monitored. We demonstrated that immunization with EDIII TMC NPs resulted in a high level of anti-EDIII antibody production. These antibodies included IgG, IgG1, and IgG2a subtypes. Importantly, antibodies from the immunized mice exerted efficient neutralizing activity with undetectable antibody dependent enhancement (ADE) activity. We also found that EDIII TMC NPs activated functional EDIII-specific CD4+ and CD8+ T cell responses. In conclusion, EDIII TMC NPs stimulated humoral immunity with a strong neutralizing antibody response, as well as a cellular immune response against DENV-2.

登革热是一种引起全球重大公共卫生关注的疾病。尽管一种四价减毒登革热活疫苗已获得许可,但由于存在疫苗突破感染的证据,其有效性仍存在争议。为避免这一问题,登革热疫苗应刺激高度的血清型特异性反应。因此,包膜结构域III (EDIII)包含血清型特异性中和表位,是登革热疫苗开发的一个有吸引力的靶点。在这项研究中,我们研究了EDIII在N, N, N-三甲基壳聚糖氯纳米颗粒(TMC NPs)中的封装如何刺激血清型特异性反应,以及这种反应是否具有体外突破感染的潜力。观察EDIII TMC np免疫小鼠对DENV-2的免疫应答。我们证明了用EDIII TMC NPs免疫导致高水平的抗EDIII抗体产生。这些抗体包括IgG、IgG1和IgG2a亚型。重要的是,来自免疫小鼠的抗体发挥了有效的中和活性,具有不可检测的抗体依赖性增强(ADE)活性。我们还发现EDIII TMC NPs激活功能性EDIII特异性CD4+和CD8+ T细胞反应。综上所述,EDIII TMC NPs通过强烈的中和抗体反应刺激体液免疫,以及针对DENV-2的细胞免疫反应。
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引用次数: 2
An Autographa californica nucleopolyhedrovirus-encoded microRNA, AcMNPV-miR-4, downregulates the expression of host gene alg-2. 加州签名虫核多角体病毒编码的microRNA AcMNPV-miR-4下调宿主基因alg2的表达。
IF 3.8 Pub Date : 2022-07-01 DOI: 10.1099/jgv.0.001769
Jin Zhao, Tingkai Teng, Jinwen Wang

Autographa california multiple nucleopolyhedrovirus (AcMNPV)-encoded microRNAs (miRNAs) that regulate viral genes to achieve infection have been reported previously. Here, we report another AcMNPV encoded miRNA, AcMNPV-miR-4 (Ac-miR-4), which downregulated the host gene, apoptosis-linked gene (alg-2). This regulation was verified by dual-luciferase reporter assays. The effects of Ac-miR-4 on virus infection were assessed. The results showed that the production of infectious budded virions (BV) was decreased and the occlusion-derived virion (ODV) embedding into polyhedra was delayed when Sf9 cells were administered an overdose of Ac-miR-4. All these findings suggest that Ac-miR-4 prolongs cell lifespan and reduces virus virulence at a relatively early stage but increases ODV at a very late stage. This finding may be attributed to the downregulation effects of alg-2, which lead to weakened ALG-2 related functions, such as cell apoptosis, vesicle budding and protein transport.

加州多核多角体病毒(AcMNPV)编码的microRNAs (miRNAs)调节病毒基因以实现感染,此前已有报道。在这里,我们报道了另一个AcMNPV编码的miRNA AcMNPV- mir -4 (Ac-miR-4),它下调宿主基因凋亡相关基因(alg2)。双荧光素酶报告基因试验证实了这种调节。评估Ac-miR-4对病毒感染的影响。结果表明,当过量给药Ac-miR-4时,Sf9细胞的感染性芽化病毒粒子(BV)的产生减少,闭塞衍生病毒粒子(ODV)嵌入多面体的时间延迟。所有这些结果表明,Ac-miR-4在相对早期延长细胞寿命并降低病毒毒力,但在非常晚期增加ODV。这一发现可能归因于alg-2的下调作用,导致与alg-2相关的功能减弱,如细胞凋亡、囊泡出芽和蛋白质运输。
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引用次数: 0
High-throughput engineering of cytoplasmic- and nuclear-replicating large dsDNA viruses by CRISPR/Cas9 利用CRISPR/Cas9技术对细胞质复制和核复制大型dsDNA病毒进行高通量工程
Pub Date : 2022-06-13 DOI: 10.1101/2022.06.13.495503
A. López-Muñoz, A. Rastrojo, Rocío Martín, A. Alcamí
The application of CRISPR/Cas9 to improve genome engineering efficiency of large dsDNA viruses has been extensively described, but a robust and versatile method for high-throughput generation of marker-free recombinants for a desire locus has not been reported yet. Cytoplasmic-replicating viruses use their own repair enzymes for homologous recombination, while nuclear-replicating viruses use the host repair machinery. This is translated into a wide range of Cas9-induced homologous recombination efficiency depending on the virus replication compartment and viral/host repair machinery characteristics and accessibility. However, the use of Cas9 as a selection agent to target parental virus genomes robustly improves the selection of desired recombinants across large dsDNA viruses. We used ectromelia virus (ECTV) and herpes simplex viruses (HSV) type 1 and 2, to optimize a CRISPR/Cas9 method that can be versatilely used for efficient genome editing and selection of both cytoplasmic- and nuclear-replicating viruses. We performed a genome-wide genetic variant analysis of mutations located at predicted off-target sequences for 20 different recombinants, showing off-target-free accuracy by deep-sequencing. Our results support this optimized method as an efficient, accurate and versatile approach to enhance the two critical factors of high-throughput viral genome engineering: generation and color-based selection of recombinants. This application of CRISPR/Cas9 reduces time and labor of screening of desired recombinants, allowing for high-throughput generation of large collections of mutant dsDNA viruses for a desire locus in less than two weeks. DATA SUMMARY Raw sequence reads are available at the European Bioinformatics Institute (EMBL-EBI) European Nucleotide Archive (ENA) as Bioproject ID PRJEB32151 and PRJEB32152. Six supplementary figures, eleven supplementary tables and supplementary methods are available with the online version of this article. The authors confirm all supporting data, code and protocols have been provided within the article or through supplementary data files.
CRISPR/Cas9在提高大型dsDNA病毒基因组工程效率方面的应用已经得到了广泛的报道,但目前还没有一种强大的、通用的方法来高通量地生成目标位点的无标记重组体。细胞质复制病毒利用自身的修复酶进行同源重组,而核复制病毒利用宿主的修复机制。这被转化为广泛的cas9诱导的同源重组效率,这取决于病毒复制室和病毒/宿主修复机制的特征和可及性。然而,使用Cas9作为选择剂靶向亲本病毒基因组,大大提高了在大型dsDNA病毒中对所需重组体的选择。我们利用嗜电性贫血病毒(ECTV)和单纯疱疹病毒(HSV) 1型和2型,优化了一种CRISPR/Cas9方法,该方法可广泛用于高效的基因组编辑和细胞质复制病毒和核复制病毒的选择。我们对20种不同重组体的预测脱靶序列上的突变进行了全基因组遗传变异分析,通过深度测序显示了脱靶的准确性。我们的研究结果支持这种优化方法作为一种高效、准确和通用的方法来提高高通量病毒基因组工程的两个关键因素:重组的产生和基于颜色的选择。CRISPR/Cas9的应用减少了所需重组筛选的时间和劳动,允许在不到两周的时间内为所需位点高通量生成大量突变dsDNA病毒。原始序列读取可在欧洲生物信息学研究所(EMBL-EBI)欧洲核苷酸档案(ENA)获得,生物项目ID为PRJEB32151和PRJEB32152。本文网络版提供6个补充图、11个补充表和补充方法。作者确认所有支持数据、代码和协议已在文章中或通过补充数据文件提供。
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引用次数: 0
Comparative kinase activity profiling of pathogenic influenza A viruses reveals new anti- and pro-viral protein kinases. 致病性甲型流感病毒的比较激酶活性分析揭示了新的抗病毒和病毒前蛋白激酶。
IF 3.8 Pub Date : 2022-06-01 DOI: 10.1099/jgv.0.001762
Lu Liu, Astrid Weiß, Vera Vivian Saul, Ralph Theo Schermuly, Stephan Pleschka, M Lienhard Schmitz

Constant evolution of influenza A viruses (IAVs) leads to the occurrence of new virus strains, which can cause epidemics and occasional pandemics. Here we compared two medically relevant IAVs, namely A/Hamburg/4/09 (H1N1pdm09) of the 2009 pandemic and the highly pathogenic avian IAV human isolate A/Thailand/1(KAN-1)/2004 (H5N1), for their ability to trigger intracellular phosphorylation patterns using a highly sensitive peptide-based kinase activity profiling approach. Virus-dependent tyrosine phosphorylations of substrate peptides largely overlap between the two viruses and are also strongly overrepresented in comparison to serine/threonine peptide phosphorylations. Both viruses trigger phosphorylations with distinct kinetics by overlapping and different kinases from which many form highly interconnected networks. As approximately half of the kinases forming a signalling hub have no known function for the IAV life cycle, we interrogated selected members of this group for their ability to interfere with IAV replication. These experiments revealed negative regulation of H1N1pdm09 and H5N1 replication by NUAK [novel (nua) kinase] kinases and by redundant ephrin A (EphA) receptor tyrosine kinases.

甲型流感病毒(iav)的不断进化导致新的病毒株的出现,这可能导致流行病和偶尔的大流行。在这里,我们比较了两种医学上相关的IAV,即2009年大流行的A/Hamburg/4/09 (H1N1pdm09)和高致病性禽流感IAV人分离物A/Thailand/1(KAN-1)/2004 (H5N1),使用高度敏感的基于肽的激酶活性分析方法,对它们触发细胞内磷酸化模式的能力进行了比较。病毒依赖的底物肽的酪氨酸磷酸化在两种病毒之间很大程度上重叠,与丝氨酸/苏氨酸肽磷酸化相比,也被严重高估。这两种病毒通过重叠和不同的激酶以不同的动力学触发磷酸化,其中许多形成高度相互连接的网络。由于大约一半形成信号中枢的激酶在IAV生命周期中没有已知的功能,我们询问了这组成员的干扰IAV复制的能力。这些实验揭示了NUAK激酶和冗余ephrin A (EphA)受体酪氨酸激酶对H1N1pdm09和H5N1复制的负调控作用。
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引用次数: 3
Differential and defective transcription of koala retrovirus indicates the complexity of host and virus evolution. 考拉逆转录病毒的转录差异和转录缺陷表明了宿主和病毒进化的复杂性。
IF 3.8 Pub Date : 2022-06-01 DOI: 10.1099/jgv.0.001749
R E Tarlinton, A R Legione, N Sarker, J Fabijan, J Meers, L McMichael, G Simmons, H Owen, J M Seddon, G Dick, J S Ryder, F Hemmatzedah, D J Trott, N Speight, N Holmes, M Loose, R D Emes

Koala retrovirus (KoRV) is unique amongst endogenous (inherited) retroviruses in that its incorporation to the host genome is still active, providing an opportunity to study what drives this fundamental process in vertebrate genome evolution. Animals in the southern part of the natural range of koalas were previously thought to be either virus-free or to have only exogenous variants of KoRV with low rates of KoRV-induced disease. In contrast, animals in the northern part of their range universally have both endogenous and exogenous KoRV with very high rates of KoRV-induced disease such as lymphoma. In this study we use a combination of sequencing technologies, Illumina RNA sequencing of 'southern' (south Australian) and 'northern' (SE QLD) koalas and CRISPR enrichment and nanopore sequencing of DNA of 'southern' (South Australian and Victorian animals) to retrieve full-length loci and intregration sites of KoRV variants. We demonstrate that koalas that tested negative to the KoRV pol gene qPCR, used to detect replication-competent KoRV, are not in fact KoRV-free but harbour defective, presumably endogenous, 'RecKoRV' variants that are not fixed between animals. This indicates that these populations have historically been exposed to KoRV and raises questions as to whether these variants have arisen by chance or whether they provide a protective effect from the infectious forms of KoRV. This latter explanation would offer the intriguing prospect of being able to monitor and selectively breed for disease resistance to protect the wild koala population from KoRV-induced disease.

考拉逆转录病毒(KoRV)在内源性(遗传)逆转录病毒中是独一无二的,因为它与宿主基因组的结合仍然活跃,这为研究脊椎动物基因组进化中驱动这一基本过程的因素提供了机会。以前认为,考拉自然分布范围南部的动物要么没有病毒,要么只有KoRV的外源性变异,KoRV诱导的疾病发病率很低。相反,在其分布范围的北部地区,动物普遍具有内源性和外源性KoRV, KoRV诱导的疾病(如淋巴瘤)发病率非常高。在这项研究中,我们使用测序技术的组合,“南方”(南澳大利亚)和“北方”(东南QLD)考拉的Illumina RNA测序和“南方”(南澳大利亚和维多利亚动物)DNA的CRISPR富集和纳米孔测序来检索KoRV变体的全长位点和整合位点。我们证明,用于检测具有复制能力的KoRV的KoRV pol基因qPCR检测为阴性的考拉,实际上并不是没有KoRV,而是携带有缺陷的,可能是内源性的,在动物之间不固定的“RecKoRV”变体。这表明这些人群在历史上曾暴露于KoRV,并提出了这些变异是偶然出现的还是它们对KoRV的传染性形式提供保护作用的问题。后一种解释将提供一个有趣的前景,即能够监测和选择性地培育抗病能力,以保护野生考拉种群免受korv诱导的疾病。
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引用次数: 4
A dopamine antagonist, domperidone enhances the replication of an oncolytic adenovirus in human tumour cells. 多潘立酮是一种多巴胺拮抗剂,可增强人肿瘤细胞中溶瘤腺病毒的复制。
IF 3.8 Pub Date : 2022-06-01 DOI: 10.1099/jgv.0.001752
Fumitaka Nishimae, Fuminori Sakurai, Ryosuke Ono, Rika Onishi, Kosuke Takayama, Hiroyuki Mizuguchi

Oncolytic adenoviruses (OAds) have attracted much attention as novel anticancer agents. Numerous studies have examined the antitumour effects of combinational use of an OAd and anticancer agents; however, few chemical compounds enhancing OAd infection have been reported. In this study, we screened a food and drug administration (FDA)-approved drug library containing 1134 small chemical compounds to identify chemical compounds that enhance OAd replication in human tumour cells. We found that domperidone, a dopamine D2 receptor antagonist, significantly enhanced the replication of an OAd in human tumour cells, including human pancreatic tumour cells, by two-fivefold, resulting in improvement of OAd-mediated tumour cell killing activities. The E1A mRNA levels were significantly increased in domperidone-pre-treated cells following OAd infection, which contributed to the promotion of OAd replication. However, mRNA levels of the dopamine D2 receptor (DRD2), which is known to be a target molecule of domperidone, were undetectable in most of the tumour cells by real-time reverse transcription (RT)-PCR analysis, indicating that domperidone promoted OAd replication by acting on a molecule other than DRD2. This study provides important clues for the improvement of OAd-mediated cancer therapy.

溶瘤腺病毒(OAds)作为一种新型的抗癌药物受到了广泛的关注。许多研究已经检查了OAd和抗癌药物联合使用的抗肿瘤效果;然而,很少有化合物增加OAd感染的报道。在这项研究中,我们筛选了美国食品和药物管理局(FDA)批准的含有1134个小化合物的药物文库,以鉴定能增强OAd在人类肿瘤细胞中复制的化合物。我们发现,多巴胺D2受体拮抗剂多潘立酮显著增强了人类肿瘤细胞(包括人类胰腺肿瘤细胞)中OAd的复制,增加了2 - 5倍,从而提高了OAd介导的肿瘤细胞杀伤活性。在多潘立酮预处理的OAd感染细胞中,E1A mRNA水平显著升高,这有助于促进OAd的复制。然而,通过实时反转录(RT)-PCR分析,在大多数肿瘤细胞中检测不到多巴胺D2受体(DRD2)的mRNA水平,而多巴胺D2受体是多潘立酮的靶分子,这表明多潘立酮通过作用于DRD2以外的分子来促进OAd的复制。本研究为改进oad介导的癌症治疗提供了重要线索。
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引用次数: 2
ICTV Virus Taxonomy Profile: Rhabdoviridae 2022. ICTV病毒分类概况:横纹蛇病毒科。
Pub Date : 2022-06-01 DOI: 10.1099/jgv.0.001689
Peter J Walker, Juliana Freitas-Astúa, Nicolas Bejerman, Kim R Blasdell, Rachel Breyta, Ralf G Dietzgen, Anthony R Fooks, Hideki Kondo, Gael Kurath, Ivan V Kuzmin, Pedro Luis Ramos-González, Mang Shi, David M Stone, Robert B Tesh, Noël Tordo, Nikos Vasilakis, Anna E Whitfield, Ictv Report Consortium

The family Rhabdoviridae comprises viruses with negative-sense (-) RNA genomes of 10-16 kb. Virions are typically enveloped with bullet-shaped or bacilliform morphology but can also be non-enveloped filaments. Rhabdoviruses infect plants or animals, including mammals, birds, reptiles, amphibians or fish, as well as arthropods, which serve as single hosts or act as biological vectors for transmission to animals or plants. Rhabdoviruses include important pathogens of humans, livestock, fish or agricultural crops. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the family Rhabdoviridae, which is available at ictv.global/report/rhabdoviridae.

横纹肌病毒科包括负义(-)RNA基因组10- 16kb的病毒。病毒粒子通常呈子弹状或杆菌状包膜,但也可以是非包膜的细丝。横纹肌病毒感染植物或动物,包括哺乳动物、鸟类、爬行动物、两栖动物或鱼类,以及节肢动物,它们作为单一宿主或作为传播给动物或植物的生物媒介。横纹肌病毒包括人类、牲畜、鱼类或农作物的重要病原体。这是国际病毒分类委员会(ICTV)关于Rhabdoviridae科报告的摘要,该报告可在ICTV .global/ Report / Rhabdoviridae获得。
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引用次数: 0
The RNA virome of echinoderms. 棘皮动物的RNA病毒。
IF 3.8 Pub Date : 2022-06-01 DOI: 10.1099/jgv.0.001772
Elliot W Jackson, Roland C Wilhelm, Daniel H Buckley, Ian Hewson

Echinoderms are a phylum of marine invertebrates that include model organisms, keystone species, and animals commercially harvested for seafood. Despite their scientific, ecological, and economic importance, there is little known about the diversity of RNA viruses that infect echinoderms compared to other invertebrates. We screened over 900 transcriptomes and viral metagenomes to characterize the RNA virome of 38 echinoderm species from all five classes (Crinoidea, Holothuroidea, Asteroidea, Ophiuroidea and Echinoidea). We identified 347 viral genome fragments that were classified to genera and families within nine viral orders - Picornavirales, Durnavirales, Martellivirales, Nodamuvirales, Reovirales, Amarillovirales, Ghabrivirales, Mononegavirales, and Hepelivirales. We compared the relative viral representation across three life stages (embryo, larvae, adult) and characterized the gene content of contigs which encoded complete or near-complete genomes. The proportion of viral reads in a given transcriptome was not found to significantly differ between life stages though the majority of viral contigs were discovered from transcriptomes of adult tissue. This study illuminates the biodiversity of RNA viruses from echinoderms, revealing the occurrence of viral groups in natural populations.

棘皮动物是海洋无脊椎动物的一门,包括模式生物、关键物种和商业收获的海产品动物。尽管棘皮动物具有重要的科学、生态和经济意义,但与其他无脊椎动物相比,人们对感染棘皮动物的RNA病毒的多样性知之甚少。我们筛选了来自5个纲(criino总纲、holothuro总纲、astero总纲、ophiuro总纲和echino总纲)的38种棘皮动物的900多个转录组和病毒宏基因组来表征RNA病毒。我们鉴定了347个病毒基因组片段,这些片段被划分为9个病毒目的属和科:Picornavirales、Durnavirales、Martellivirales、Nodamuvirales、Reovirales、Amarillovirales、Ghabrivirales、Mononegavirales和Hepelivirales。我们比较了三个生命阶段(胚胎、幼虫、成虫)的相对病毒代表,并表征了编码完整或接近完整基因组的contigs的基因含量。尽管大多数病毒序列是从成体组织的转录组中发现的,但在给定转录组中的病毒读取比例在生命阶段之间没有显着差异。本研究阐明了棘皮动物RNA病毒的生物多样性,揭示了自然种群中病毒群的存在。
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引用次数: 0
Systematic HIV-1 promoter targeting with CRISPR/dCas9-VPR reveals optimal region for activation of the latent provirus. CRISPR/dCas9-VPR系统靶向HIV-1启动子揭示了潜伏前病毒激活的最佳区域。
Pub Date : 2022-06-01 DOI: 10.1099/jgv.0.001754
Sarah Klinnert, Alex Chemnitzer, P. Rusert, K. Metzner
CRISPR/dCas9-based activation systems (CRISPRa) enable sequence-specific gene activation and are therefore of particular interest for the 'shock and kill' cure approach against HIV-1 infections. This approach aims to activate the latent HIV-1 proviruses in infected cells and subsequently kill these cells. Several CRISPRa systems have been shown to specifically and effectively activate latent HIV-1 when targeted to the HIV-1 5'LTR promoter, making them a promising 'shock' strategy. Here, we aimed to evaluate the dCas9-VPR system for its applicability in reversing HIV-1 latency and identify the optimal gRNA target site in the HIV-1 5'LTR promoter leading to the strongest activation of the provirus with this system. We systematically screened the HIV-1 promoter by selecting 14 specific gRNAs that cover almost half of the HIV-1 promoter from the 3' half of the U3 until the beginning of the R region. Screening in several latently HIV-1 infected cell lines showed that dCas9-VPR leads to a high activation of HIV-1 and that gRNA-V and -VII induce the strongest activation of replication competent latent provirus. This data indicates that the optimal activation region in the HIV-1 promoter for the dCas9-VPR system is located -165 to -106 bp from the transcription start site and that it is consistent with the optimal activation region reported for other CRISPRa systems. Our data demonstrates that the dCas9-VPR system is a powerful tool for HIV-1 activation and could be harnessed for the 'shock and kill' cure approach.
基于CRISPR/ dcas9的激活系统(CRISPRa)能够激活序列特异性基因,因此对针对HIV-1感染的“休克和杀死”治疗方法特别感兴趣。这种方法旨在激活感染细胞中潜伏的HIV-1前病毒,随后杀死这些细胞。当靶向hiv - 15 ' ltr启动子时,一些CRISPRa系统已被证明能够特异性和有效地激活潜伏的HIV-1,使它们成为一种有希望的“冲击”策略。在这里,我们旨在评估dCas9-VPR系统在逆转HIV-1潜伏期方面的适用性,并确定hiv - 15 ' ltr启动子中的最佳gRNA靶点,从而使该系统能够最强地激活原病毒。我们通过选择14个特异性grna系统地筛选了HIV-1启动子,这些grna覆盖了几乎一半的HIV-1启动子,从U3的3'半部到R区域的开始。在几种潜伏性HIV-1感染细胞系中筛选表明,dCas9-VPR可导致HIV-1的高激活,而gRNA-V和-VII可诱导复制活性潜伏性原病毒的最强激活。这些数据表明,dCas9-VPR系统的HIV-1启动子的最佳激活区域位于转录起始位点-165至-106 bp处,这与其他CRISPRa系统报道的最佳激活区域一致。我们的数据表明,dCas9-VPR系统是HIV-1激活的强大工具,可以用于“休克和杀死”治疗方法。
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引用次数: 2
期刊
The Journal of general virology
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