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DG-DiT: Dual-Branch Gating Diffusion Transformer for Multi-Tracer and Multi-Scanner Brain PET Image Denoising. DG-DiT:用于多示踪和多扫描仪脑PET图像去噪的双支路门控扩散变压器。
IF 3.5 Q1 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-11-07 DOI: 10.1109/trpms.2025.3630161
Ziyuan Zhou, Fan Yang, Tzu-An Song, Bowen Lei, Yubo Zhang, Joyita Dutta

Diffusion probabilistic models (DPMs) have been demonstrated to be effective for denoising positron emission tomography (PET) images due to their ability to model complex data distributions. However, limitations in efficiency, accuracy, and generalizability remain open challenges in this area. In PET denoising, where high fidelity to the ground truth is critical, DPMs often require a large number of iterations and tend to offer limited quantitative accuracy. Moreover, traditional DPMs struggle to model variabilities in the data distribution arising from the use of multiple scanners and tracers. To address these issues, we propose a dual-branch gating diffusion transformer (DG-DiT) network for multi-tracer and multi-scanner PET denoising. The proposed DG-DiT exploits the strong distribution modeling capabilities of a diffusion transformer (DiT) to learn prior knowledge from a compact and regularized latent space. The design of the latent space enables efficient few-step diffusion. In addition, an image restoration transformer (IRT) model is employed for generating the final denoised image. The DiT backbone and the IRT both utilize a dual-branch gating mechanism to efficiently fuse information from multiple inputs. We conducted extensive experiments on multi-tracer and multi-scanner datasets. The results demonstrate that the proposed DG-DiT model achieves the highest quantitative accuracy across every scanner and tracer, with a PSNR improvement of up to 0.2 dB compared to several state-of-the-art deep learning models. Contrast-to-noise ratio evaluation shows that the proposed model is able to recover contrast in small and critical brain regions while effectively reducing noise. This suggests that the proposed DG-DiT model can consistently deliver superior denoising performance.

扩散概率模型(dpm)已经被证明是有效的去噪正电子发射断层扫描(PET)图像,因为它们能够模拟复杂的数据分布。然而,在效率、准确性和通用性方面的限制仍然是该领域的开放挑战。在PET去噪中,对真实地面的高保真度是至关重要的,dpm通常需要大量的迭代,并且往往提供有限的定量精度。此外,传统的dpm难以对由于使用多个扫描仪和跟踪器而产生的数据分布中的可变性进行建模。为了解决这些问题,我们提出了一种用于多示踪剂和多扫描仪PET去噪的双支路门控扩散变压器(DG-DiT)网络。该方法利用扩散变压器(diffusion transformer, DiT)强大的分布建模能力,从紧致、正则化的潜在空间中学习先验知识。潜伏空间的设计使有效的几步扩散成为可能。此外,采用图像恢复变换(IRT)模型生成去噪后的图像。DiT主干和IRT都利用双分支门控机制来有效地融合来自多个输入的信息。我们在多示踪剂和多扫描仪数据集上进行了广泛的实验。结果表明,与几种最先进的深度学习模型相比,所提出的DG-DiT模型在每种扫描仪和示踪剂中实现了最高的定量精度,PSNR提高了0.2 dB。对比噪声比评估表明,该模型能够在有效降低噪声的同时恢复大脑小区域和关键区域的对比度。这表明所提出的DG-DiT模型可以始终提供优越的去噪性能。
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IEEE Transactions on Radiation and Plasma Medical Sciences Publication Information IEEE辐射与等离子体医学科学汇刊信息
IF 3.5 Q1 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-11-04 DOI: 10.1109/TRPMS.2025.3623747
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IF 3.5 Q1 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-11-04 DOI: 10.1109/TRPMS.2025.3624770
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IF 3.5 Q1 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-11-04 DOI: 10.1109/TRPMS.2025.3624772
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IF 3.5 Q1 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-11-04 DOI: 10.1109/TRPMS.2025.3623749
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YRT-PET: An Open-Source GPU-accelerated Image Reconstruction Engine for Positron Emission Tomography. 一个开源的gpu加速图像重建引擎,用于正电子发射断层扫描。
IF 3.5 Q1 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-10-13 DOI: 10.1109/TRPMS.2025.3619872
Yassir Najmaoui, Yanis Chemli, Maxime Toussaint, Yoann Petibon, Baptiste Marty, Kathryn Fontaine, Jean-Dominique Gallezot, Gašper Razdevšek, Matic Orehar, Maeva Dhaynaut, Nicolas Guehl, Rok Dolenec, Rok Pestotnik, Keith Johnson, Jinsong Ouyang, Marc Normandin, Marc-André Tétrault, Roger Lecomte, Georges El Fakhri, Thibault Marin

Image reconstruction for positron emission tomography (PET) requires an accurate model of the PET scanner geometry and degrading factors to produce high-quality and clinically meaningful images. It is typically implemented by scanner manufacturers, with proprietary software designed specifically for each scanner. This limits the ability to perform direct comparisons between scanners or to develop advanced image reconstruction algorithms. Open-source image reconstruction software can offer an alternative to manufacturer implementations, allowing more control and portability. Several existing software packages offer a wide range of features and interfaces, but there is still a need for an engine that simultaneously offers reusable code, fast implementation and convenient interfaces for interoperability and extensibility. In this work, we introduce YRT-PET (Yale Reconstruction Toolkit for Positron Emission Tomography), an open-source toolkit for PET image reconstruction that aims for flexibility, reproducibility, speed, and interoperability with existing research software. The toolkit is implemented in C++ with CUDA-enabled GPU acceleration, relies on a plugin system to facilitate the use with multiple scanners, and offers Python bindings to enable the development of advanced algorithms. It includes support for list-mode/histogram data formats, multiple PET projectors, incorporation of time-of-flight information, event-by-event rigid motion correction, point-spread function modeling. It can incorporate correction factors such as normalization, randoms and scatter, obtained from scanner-specific plugins or provided by the user. The toolkit also includes an experimental module for scatter estimation without time-of-flight. To evaluate the capabilities of the software, two different scanners in four different contexts were tested: dynamic imaging, motion correction, deep image prior, and reconstruction for a limited-angle scanner geometry with time-of-flight. Comparisons with existing tools demonstrated good agreement in image quality and the effectiveness of the correction methods. The proposed software toolkit offers high versatility and potential for research, including the development of novel reconstruction algorithms and new PET scanner systems.

正电子发射断层扫描(PET)的图像重建需要一个准确的PET扫描仪几何模型和降解因素,以产生高质量和有临床意义的图像。它通常由扫描仪制造商实现,具有专门为每个扫描仪设计的专有软件。这限制了在扫描仪之间进行直接比较或开发高级图像重建算法的能力。开源图像重建软件可以提供制造商实现的替代方案,允许更多的控制和可移植性。一些现有的软件包提供了广泛的特性和接口,但是仍然需要一个引擎,同时提供可重用代码、快速实现和方便的互操作性和可扩展性接口。在这项工作中,我们介绍了YRT-PET(耶鲁正电子发射断层扫描重建工具包),这是一个用于PET图像重建的开源工具包,旨在实现灵活性,可重复性,速度和与现有研究软件的互操作性。该工具包使用支持cuda的GPU加速的c++实现,依赖于一个插件系统来促进多个扫描仪的使用,并提供Python绑定来支持高级算法的开发。它包括对列表模式/直方图数据格式的支持,多个PET投影仪,结合飞行时间信息,逐事件刚性运动校正,点传播函数建模。它可以纳入校正因子,如归一化,随机和分散,从扫描仪特定的插件获得或由用户提供。该工具包还包括一个实验模块,用于无飞行时间的散射估计。为了评估软件的能力,在四种不同的环境下测试了两种不同的扫描仪:动态成像,运动校正,深度图像先验,以及具有飞行时间的有限角度扫描仪几何形状的重建。与现有工具的比较表明,在图像质量和校正方法的有效性方面有很好的一致性。所提出的软件工具包具有很高的通用性和研究潜力,包括开发新的重建算法和新的PET扫描仪系统。
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Simulating Sinogram-Domain Motion and Correcting Image-Domain Artifacts Using Deep Learning in HR-pQCT Bone Imaging. 基于深度学习的HR-pQCT骨成像图像域运动模拟与伪影校正。
IF 3.5 Q1 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-10-03 DOI: 10.1109/trpms.2025.3617225
Farhan Sadik, Christopher L Newman, Stuart J Warden, Rachel K Surowiec

Rigid-motion artifacts, such as cortical bone streaking and trabecular smearing, hinder in vivo assessment of bone microstructures in high-resolution peripheral quantitative computed tomography (HR-pQCT). Despite various motion grading techniques, no motion correction methods exist due to the lack of standardized degradation models. We optimize a conventional sinogram-based method to simulate motion artifacts in HR-pQCT images, creating paired datasets of motion-corrupted images and their corresponding ground truth, which enables seamless integration into supervised learning frameworks for motion correction. As such, we propose an Edge-enhanced Self-attention Wasserstein Generative Adversarial Network with Gradient Penalty (ESWGAN-GP) to address motion artifacts in both simulated (source) and real-world (target) datasets. The model incorporates edge-enhancing skip connections to preserve trabecular edges and self-attention mechanisms to capture long-range dependencies, facilitating motion correction. A visual geometry group (VGG)-based perceptual loss is used to reconstruct fine micro-structural features. The ESWGAN-GP achieves a mean signal-to-noise ratio (SNR) of 26.78, structural similarity index measure (SSIM) of 0.81, and visual information fidelity (VIF) of 0.76 for the source dataset, while showing improved performance on the target dataset with an SNR of 29.31, SSIM of 0.87, and VIF of 0.81. The proposed methods address a simplified representation of real-world motion that may not fully capture the complexity of in vivo motion artifacts. Nevertheless, because motion artifacts present one of the foremost challenges to more widespread adoption of this modality, these methods represent an important initial step toward implementing deep learning-based motion correction in HR-pQCT.

刚性运动伪影,如皮质骨条纹和小梁涂片,阻碍了高分辨率外周定量计算机断层扫描(HR-pQCT)对骨微结构的体内评估。尽管有各种各样的运动分级技术,但由于缺乏标准化的退化模型,没有运动校正方法。我们优化了传统的基于图的方法来模拟HR-pQCT图像中的运动伪影,创建了运动损坏图像的配对数据集及其相应的基础真值,从而能够无缝集成到监督学习框架中进行运动校正。因此,我们提出了一种边缘增强的带有梯度惩罚的自关注Wasserstein生成对抗网络(ESWGAN-GP)来解决模拟(源)和现实世界(目标)数据集中的运动伪像。该模型结合了边缘增强跳跃连接,以保持小梁边缘和自注意机制,以捕获远程依赖关系,促进运动校正。利用基于视觉几何群(VGG)的感知损失来重建精细的微观结构特征。ESWGAN-GP在源数据集上的平均信噪比(SNR)为26.78,结构相似指数(SSIM)为0.81,视觉信息保真度(VIF)为0.76,在目标数据集上的信噪比(SNR)为29.31,SSIM为0.87,VIF为0.81。提出的方法解决了现实世界运动的简化表示,可能无法完全捕获体内运动伪影的复杂性。然而,由于运动伪影是更广泛采用这种模式的主要挑战之一,这些方法代表了在HR-pQCT中实现基于深度学习的运动校正的重要的第一步。
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IEEE Transactions on Radiation and Plasma Medical Sciences Publication Information IEEE辐射与等离子体医学科学汇刊信息
IF 3.5 Q1 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-09-05 DOI: 10.1109/TRPMS.2025.3599622
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IF 3.5 Q1 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-09-05 DOI: 10.1109/TRPMS.2025.3600231
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IEEE DataPort IEEE DataPort
IF 3.5 Q1 RADIOLOGY, NUCLEAR MEDICINE & MEDICAL IMAGING Pub Date : 2025-09-05 DOI: 10.1109/TRPMS.2025.3600229
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引用次数: 0
期刊
IEEE Transactions on Radiation and Plasma Medical Sciences
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