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Peptides and peptidomimetics in the development of hydrogels towards the treatment of diabetic wounds 水凝胶在糖尿病伤口治疗中的应用
IF 3.6 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-01 DOI: 10.1016/j.crbiot.2025.100292
Ana Gomes, Paula Gomes
Diabetic foot ulcers are a major complication of diabetes and a particularly complex type of chronic wounds, as most diabetes-related physiological dysregulations impair healing and increase the risk of infection. Despite many health literacy initiatives have been deployed to promote both the prevention and the proper management of diabetic foot ulcers, these remain a serious healthcare problem whose incidence is rising. This demands not only for a continuous updating of guidelines for adequate interventions in healthcare facilities, but also for new topical treatments able to improve the health and well-being of the patients. In this later case, current options include topical oxygen therapy, negative pressure wound therapy, wound dressings of different types, and topical gels. Due to the tremendous potential of hydrogel-based dressings for diabetic wound treatment, several hydrogels from either natural or synthetic origin have been explored. The hydrogel polymeric matrices can be loaded with many diverse molecules (cargoes) eventually combining distinct therapeutic actions. In this context, peptides are gaining relevance, which is not limited to those used as bioactive cargoes, since self-assembling peptides able to form hydrogels are also under the spotlight. This review focuses on the studies reported over the last decade where peptide-loaded or peptide-derived hydrogels have been tested in vivo for topical treatment of diabetic wounds and further explores the potential of peptidomimetics to expand the portfolio of hydrogel-based treatments for diabetic foot ulcers.
糖尿病足溃疡是糖尿病的主要并发症,也是一种特别复杂的慢性伤口,因为大多数糖尿病相关的生理失调会损害愈合并增加感染的风险。尽管为促进糖尿病足溃疡的预防和适当管理采取了许多卫生扫盲举措,但这仍然是一个严重的保健问题,其发病率正在上升。这不仅要求在医疗机构中不断更新适当干预的指导方针,而且要求新的局部治疗能够改善患者的健康和福祉。在后一种情况下,目前的选择包括局部氧疗、负压伤口治疗、不同类型的伤口敷料和局部凝胶。由于水凝胶基敷料在糖尿病伤口治疗中的巨大潜力,人们已经探索了几种天然或合成的水凝胶。水凝胶聚合物基质可以装载许多不同的分子(货物),最终结合不同的治疗作用。在这种情况下,肽正在获得相关性,这不仅限于那些用作生物活性货物的肽,因为能够形成水凝胶的自组装肽也在聚光灯下。这篇综述的重点是在过去的十年中,肽负载或肽衍生的水凝胶已经在体内测试用于局部治疗糖尿病伤口的研究,并进一步探讨了拟肽的潜力,以扩大水凝胶治疗糖尿病足溃疡的组合。
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引用次数: 0
Preliminary evaluation of the anti-acne potential of herbal and fruit extracts and formulated creams 抗痤疮潜力的初步评估草药和水果提取物和配方面霜
IF 4 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-01 DOI: 10.1016/j.crbiot.2025.100339
Benish Gulzar , Muniba Ahmad , Dilara Abbas Bukhari , Zuhra Bibi , Arif Ullah , Abdul Rehman
The objective of the research was to evaluate the antibacterial efficacy of the selected herbal and fruit extracts against acne-causing bacteria and then to prepare effective anti-acne creams. People aged 15 to 19 were selected for taking acne samples, and bacterial isolates were characterized through biochemical methods (Gram staining, catalase, glucose fermentation) initially, and finally through a molecular approach. Six strains were identified through molecular characterisation, which included DNA extraction, polymerase chain reaction, and 16S rRNA gene sequencing: S1 (Staphylococcus sp.), S2 (Cutibacterium acnes), S3 (Staphylococcus aureus), S4 (Staphylococcus epidermis), S5 (Bacillus paramycoides), and S6 (Mammalicoccus lentus). Ethanolic extracts of herbs, i.e., neem, tulsi, liquorice, turmeric, amaltas, and fruits, i.e., sweet lime, banana, pomegranate, and lemon, were made and added to cream formulations. The antibacterial activity of the herbal and fruit extracts was analysed by well and disc diffusion methods, whereas phytochemical components of the extracts were determined throughanalysed by using GC–MS analysis. The extracts of neem and pomegranate are the most effective ones among all the tested strains, which were confirmed by significant inhibition zones and ANOVA analysis. Notably, GC–MS analysis detected the presence of key bioactive compounds such as mahanimbine in neem and hydroxymethylfurfural in pomegranate, which have anti-inflammatory and antibacterial effects relevant to treating acne. On the other hand, liquorice demonstrated the least efficacy. The neem, tulsi, liquorice, and other herbal extracts-based cream (Formulation A) had considerably high zones of inhibition, especially 37.67 mm in the case of Staphylococcus sp., and 37.66 mm in the case of C. acnes. Comparatively, moderate antibacterial activity was displayed by fruit-based cream (Formulation B) with the largest inhibition range of 25 and 22  mm towards C. acnes and B. paramycoides, respectively. The results also confirm the possible use of certain plant-based compositions in acne treatment, and they should be used in future in vivo studies to prove clinical effectiveness.
本研究的目的是评价所选草药和水果提取物对引起痤疮的细菌的抑菌效果,然后制备有效的抗痤疮霜。选取年龄在15 ~ 19岁的人群采集痤疮样本,通过革兰氏染色、过氧化氢酶、葡萄糖发酵等生化方法对分离的细菌进行初步鉴定,最后通过分子方法对分离的细菌进行鉴定。通过DNA提取、聚合酶链反应、16S rRNA基因测序等方法鉴定出6株菌株:S1(葡萄球菌)、S2(痤疮角质杆菌)、S3(金黄色葡萄球菌)、S4(表皮葡萄球菌)、S5(副芽孢杆菌)、S6(乳球菌)。草药的乙醇提取物,如楝树、土尔西、甘草、姜黄、阿玛尔塔和水果,如甜酸橙、香蕉、石榴和柠檬,被制成并添加到奶油配方中。采用孔扩散法和圆盘扩散法分析了中药和水果提取物的抑菌活性,采用气相色谱-质谱法测定了提取物的植物化学成分。通过显著的抑菌区和方差分析证实,楝树和石榴提取物的抑菌效果最好。值得注意的是,GC-MS分析检测到楝树中的mahanimbine和石榴中的羟甲基糠醛等关键生物活性化合物的存在,这些化合物具有抗炎和抗菌作用,与治疗痤疮有关。另一方面,甘草的效果最差。楝树、杜尔丝、甘草和其他草本提取物为基础的乳膏(配方A)具有相当高的抑制区,特别是对葡萄球菌的抑制区为37.67 mm,对痤疮C.的抑制区为37.66 mm。相比之下,水果乳膏(配方B)的抑菌活性中等,对痤疮芽孢杆菌和副芽孢杆菌的抑菌范围最大,分别为25和22 mm。研究结果还证实了某些植物成分可能用于治疗痤疮,并且应该在未来的体内研究中使用它们来证明临床有效性。
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引用次数: 0
Insights into the world of edible vaccines: From lab to reality 洞察可食用疫苗的世界:从实验室到现实
IF 3.6 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-01 DOI: 10.1016/j.crbiot.2025.100290
Baveesh Pudhuvai , Bhupendra Koul , Awdhesh Kumar Mishra
Edible vaccines have emerged as a groundbreaking advancement in the field of immunization, offering a unique and promising approach to combat infectious diseases. These are subunit vaccines wherein plants are genetically engineered to synthesise specific proteins to induce disease resistance. This idea of plant-based edible vaccines (PBVs) shall prove to be a boon for society, in the health sector as they are affordable, simple to administer and store. The use of edible vaccines has demonstrated a boost in mucosal and systemic immunity. Plants like potato, banana, lettuce, corn, soybean, rice, and legumes have been utilized for this application and have resulted in reduced diseases such as cholera, hepatitis, measles, diarrhoea. This review provides an overview of edible vaccines, exploring their development, advantages, challenges, and future potential. This further explores the processes involved in transforming plants using both direct and indirect gene delivery methods and provides an in-depth analysis of the background and clinical evidence for each plant candidate. Additionally, it also highlights the scientific advancements, ethical considerations, regulatory aspects, and potential impact of edible vaccines on global health and shall benefit researchers globally, in the field of developmental therapeutics, alternative medicine, and green chemistry.
可食用疫苗是免疫领域的一项突破性进展,为抗击传染病提供了一种独特而有前景的方法。这些亚单位疫苗通过基因工程改造植物,使其合成特定蛋白质,从而诱导疾病抵抗力。这种基于植物的可食用疫苗(PBVs)理念将被证明是社会和卫生部门的福音,因为它们价格低廉,易于管理和储存。可食用疫苗的使用已证明可增强粘膜和全身免疫力。马铃薯、香蕉、莴苣、玉米、大豆、水稻和豆类等植物已被用于这一用途,从而减少了霍乱、肝炎、麻疹和腹泻等疾病。本综述概述了可食用疫苗,探讨了其发展、优势、挑战和未来潜力。它进一步探讨了利用直接和间接基因传递方法转化植物的过程,并深入分析了每种候选植物的背景和临床证据。此外,该书还重点介绍了可食用疫苗的科学进步、伦理考虑、监管方面以及对全球健康的潜在影响,并将惠及全球开发疗法、替代医学和绿色化学领域的研究人员。
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引用次数: 0
Sustainable remediation of persistent organic Pollutants: A review on Recent innovative technologies 持久性有机污染物的可持续修复:最新创新技术综述
IF 3.6 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-01 DOI: 10.1016/j.crbiot.2025.100293
Fatihu Kabir Sadiq , Abdulalim Ahovi Sadiq , Tiroyaone Albertinah Matsika , Barikisu Ahuoyiza Momoh
Persistent organic pollutants (POPs) are harmful chemicals that remain in the environment for a long time due to their resistance to degradation. They represent a significant challenge to sustainable development due to their enduring presence and potential for bioaccumulation in the environment. This review examines emerging technologies for POP remediation, assessing conventional methods while emphasizing the potential of innovative approaches. Advanced technologies, including nanotechnology and advanced oxidation processes (AOPs), show potential for effective, cost-efficient and environmentally friendly POP degradation. Among AOPs, methods such as UV/H2O2, Fenton’s reaction, photo-Fenton, UV/Ozone, and photocatalysis with semiconductors like TiO2 are particularly effective in breaking down POPs into less harmful substances. Nanotechnology-based methods provide high efficiency, selectivity, and reduced environmental impact, while photocatalysis offers a sustainable and eco-friendly approach to POP degradation. To enhance remediation effectiveness, integrating innovative materials, optimized processes, and artificial intelligence (AI) is crucial. Advancements in eco-friendly nanomaterials, hybrid AOPs, and AI-driven process optimization can significantly improve degradation efficiency, selectivity, and sustainability. Future research should focus on scaling up these technologies, improving cost-effectiveness, and incorporating AI-powered smart monitoring systems for long-term environmental management. A holistic and sustainable remediation strategy must also align with circular economy principles, promote eco-friendly innovations, and address the influence of climate change on POP behavior. By fostering interdisciplinary research, policy support, and international collaboration, the development of accessible and sustainable remediation solutions can be accelerated, contributing to a cleaner environment and a healthier future for all.
持久性有机污染物(POPs)是一种有害化学品,因其难降解而长期存在于环境中。由于它们在环境中的持久存在和生物累积潜力,它们对可持续发展构成了重大挑战。本综述探讨了持久性有机污染物修复方面的新兴技术,在评估传统方法的同时强调了创新方法的潜力。包括纳米技术和高级氧化工艺 (AOP) 在内的先进技术显示出了有效、经济、环保地降解持久性有机污染物的潜力。在 AOPs 中,紫外线/H2O2、芬顿反应、光-芬顿、紫外线/臭氧以及使用 TiO2 等半导体的光催化等方法在将持久性有机污染物分解为危害较小的物质方面尤为有效。基于纳米技术的方法具有效率高、选择性强和对环境影响小的特点,而光催化则为持久性有机污染物的降解提供了一种可持续的生态友好型方法。要提高修复效果,整合创新材料、优化工艺和人工智能(AI)至关重要。生态友好型纳米材料、混合 AOP 和人工智能驱动的工艺优化等方面的进步可以显著提高降解效率、选择性和可持续性。未来研究的重点应是扩大这些技术的规模,提高成本效益,并将人工智能驱动的智能监测系统纳入长期环境管理。全面、可持续的修复战略还必须符合循环经济原则,促进生态友好型创新,并应对气候变化对持久性有机污染物行为的影响。通过促进跨学科研究、政策支持和国际合作,可以加快开发可获得和可持续的修复解决方案,为更清洁的环境和更健康的未来做出贡献。
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引用次数: 0
Genetic diversity and population structure of Cnaphalocrocis medinalis across India and South Asia: Insights from COI and ITS2 gene analyses 印度和南亚稻纵卷叶蝉的遗传多样性和种群结构:来自COI和ITS2基因分析的见解
IF 3.6 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-01 DOI: 10.1016/j.crbiot.2025.100281
Soumya Shephalika Dash , Prasanthi Golive , C. Parameswaran , Prakash Chandra Rath , Hirak Chatterjee , Arup Kumar Mukherjee , Partha Sarathi Tripathy , Anjan Kumar Nayak , Sucharita Mohapatra , Bijay Kumar Behera , Shyamaranjan Das Mohapatra
Rice leaffolder, Cnaphalocrocis medinalis, a major pest of rice, poses a significant threat to crop yield across Asia. This is why the spread of this pest across Southeast Asia needs to be studied to understand its population dynamics, genetic diversity, and potential impact on regional rice cultivation. In this study, the genetic diversity and population structure of C. medinalis were examined using mitochondrial COI and nuclear ITS2 gene sequences collected from 15 Indian states and several South Asian countries. A total of 100 COI and 63 ITS2 sequences were analyzed, including new and publicly available data on NCBI, to assess nucleotide diversity, haplotype variation, and phylogenetic relationships. The DNA extraction, PCR amplification, sequencing, and bioinformatics analyses were done. Results revealed higher haplotype and nucleotide diversity in Indian populations compared to other Asian regions, indicating genetic variations and potential historical bottlenecks followed by population expansions. Median-joining haplotype networks showed widespread haplotypes, suggesting gene flow, while region-specific haplotypes indicated localized adaptation. AMOVA highlighted substantial genetic differentiation among populations for COI (62.51% variation), whereas ITS2 showed moderate differentiation (43.86%). Phylogenetic analyses identified polyphyletic and monophyletic clades, emphasizing complex population dynamics. Neutrality tests and mismatch distributions suggested demographic expansions in Indian populations. These findings underscore the evolutionary history, possible migration pattern and genetic structure of C. medinalis, providing insights into pest management strategies. Future research should explore environmental and anthropogenic factors driving genetic differentiation to enhance integrated pest management practices, ensuring sustainable rice production across diverse agro-climatic regions.
稻纵卷叶螟(cnaphalocrois medinalis)是水稻的主要害虫,对亚洲各地的作物产量构成重大威胁。这就是为什么需要研究这种害虫在东南亚的传播,以了解其种群动态、遗传多样性以及对区域水稻种植的潜在影响。本研究利用从印度15个邦和南亚几个国家收集的稻卷草线粒体COI和核ITS2基因序列,对稻卷草的遗传多样性和种群结构进行了研究。共分析了100个COI和63个ITS2序列,包括新的和公开的NCBI数据,以评估核苷酸多样性、单倍型变异和系统发育关系。进行DNA提取、PCR扩增、测序和生物信息学分析。结果显示,与亚洲其他地区相比,印度人群的单倍型和核苷酸多样性更高,这表明了遗传变异和潜在的历史瓶颈,随后是人口扩张。中位连接的单倍型网络显示出广泛的单倍型,表明基因流动,而区域特异性单倍型表明局部适应。AMOVA结果显示COI群体间存在较大的遗传分化(变异率为62.51%),而ITS2群体间存在中等分化(变异率为43.86%)。系统发育分析确定了多系和单系进化枝,强调了复杂的种群动态。中性测试和不匹配分布表明印度人口在扩大。这些发现强调了稻纵卷叶螟的进化历史、可能的迁移模式和遗传结构,为害虫防治策略提供了新的思路。未来的研究应探索驱动遗传分化的环境和人为因素,以加强病虫害综合治理措施,确保不同农业气候区域的可持续水稻生产。
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引用次数: 0
A systematic review on Indian Acacia species 文章题目印度金合欢种的系统综述
IF 3.6 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-01 DOI: 10.1016/j.crbiot.2025.100274
Bharat Singh , Jagdish Prasad , Ram Avtar Sharma
Acacia plants are evergreen, perennial, short, flat-crowned to long and straight-bole trees. A total of 34 species of Acacia genus are distributed in different states of India. Acacia plants are used in the treatment of chronic dysentery, diarrhoea, throat troubles, conjunctivitis and stomatitis. The critical data of ethnopharmacological properties, phytochemical and pharmacological attributes of 27 species were obtained through extensive review of relevant reference books, M. Sc./M. Tech dissertations, PhD theses, Web of Science, PubMed, Google Scholar, ScienceDirect, Wiley, Taylors & Francis, Bentham, Thieme, Springer, and eFloras. The flavone glycosides, flavonoids, lignans, anthraquinones, monoterpenes, and alkaloids have been identified from 20 species of Indian Acacia species. Indian Acacia species possess antimicrobial, antidiabetic, antiarthritic, antistress, anti-inflammatory, antioxidant, anticancer, and wound healing properties. However, various reports are available in literature on phytochemistry and biological properties of 27 Indian Acacia species but, still 7 species have not been evaluated for their pharmacological studies. The review discusses updated knowledge of ethnopharmacological applications, phytochemical and pharmacological attributes, and pharmacokinetic profiles of Indian Acacia species.
金合欢植物是常绿,多年生,短,平冠到长和直孔树。共有34种金合欢属分布在印度的不同邦。金合欢植物被用于治疗慢性痢疾、腹泻、咽喉疾患、结膜炎和口炎。通过查阅相关文献,获得了27种植物的民族药理学、植物化学和药理特性的关键数据。科技论文、博士论文、Web of Science、PubMed、b谷歌Scholar、ScienceDirect、Wiley、Taylors &;Francis, Bentham, Thieme, b施普林格和eFloras。从20种印度金合欢中鉴定出黄酮类苷、类黄酮、木脂素、蒽醌类、单萜和生物碱。印度金合欢具有抗菌、抗糖尿病、抗关节炎、抗应激、抗炎、抗氧化、抗癌和伤口愈合的特性。然而,文献对27种印度金合欢的植物化学和生物学特性有各种报道,但仍有7种尚未进行药理研究。综述了印度金合欢的民族药理学应用、植物化学和药理学特性以及药代动力学特征等方面的最新知识。
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引用次数: 0
Curcumin dietary supplementation enhances serum carbohydrate-degrading enzyme activities in buffaloes 饲粮中添加姜黄素可提高水牛血清碳水化合物降解酶的活性
IF 3.6 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-01 DOI: 10.1016/j.crbiot.2025.100276
Maima Matin , Natalia Ksepka , Kamil Wysocki , Michel-Edwar Mickael , Alpana Pande , Jarosław Olav Horbańczuk , Artur Jóźwik , Olga Adamska , Artur Stolarczyk , Laszlo Barna Iantovics , Yordanka Ilieva , Pencho Penchev , Atanas G. Atanasov
Curcumin, the major bioactive compound found in turmeric (Curcuma longa) is a subject of intensive research, due to its multiple bioactivities. Previous studies have investigated metabolic effects of curcumin in humans or established animal research models such as mice, but studies with farm animals have been scarce. In this work, we aimed to study the effects of curcumin supplementation in Bulgarian Murrah buffaloes (Bubalus bubalis), on the serum activities of seven important carbohydrate-metabolizing enzymes, β-glucuronidase, α-galactosidase, α-glucosidase, β-glucosidase, β-galactosidase, N-acetyl-hexosaminidase, and mannosidase. Curcumin was supplemented at a dose of 50 g per animal, per day, and serum activities of the studied enzymes were determined at the start (day 0), middle (day 14), and end (day 28) of the supplementation period. A tendency for increased activity of all studied enzymes was observed upon supplementation with curcumin, with the activity levels of five of the enzymes displaying statistically significant upregulation at day 28 (β-glucuronidase, α-galactosidase, β-galactosidase, N-acetyl-hexosaminidase, and mannosidase). These upregulated activities are in general indicative of increased carbohydrates turnover and detoxification processes, and might provide clues for a better understanding of the mechanisms of action of curcumin in vivo, as well as for novel approaches to rationally impact animal or human health and wellbeing through targeted supplementation.
姜黄素是姜黄(Curcuma longa)中发现的主要生物活性化合物,因其具有多种生物活性而受到广泛研究。以前的研究已经调查了姜黄素在人类或建立动物研究模型(如小鼠)中的代谢作用,但对农场动物的研究很少。本研究旨在研究在保加利亚穆拉水牛(Bubalus bubalis)中添加姜黄素对7种重要糖代谢酶(β-葡萄糖苷酶、α-半乳糖苷酶、α-葡萄糖苷酶、β-葡萄糖苷酶、β-半乳糖苷酶、n -乙酰己糖苷酶和甘露糖苷酶)血清活性的影响。以每只动物每天50 g的剂量添加姜黄素,并在添加期开始(第0天)、中期(第14天)和结束(第28天)测定所研究酶的血清活性。在补充姜黄素后,观察到所有研究酶的活性都有增加的趋势,其中5种酶的活性水平在第28天显示出统计学上显著的上调(β-葡萄糖醛酸酶、α-半乳糖苷酶、β-半乳糖苷酶、n -乙酰己糖苷酶和甘露糖苷酶)。这些上调的活性通常表明碳水化合物转换和解毒过程增加,并可能为更好地了解姜黄素在体内的作用机制提供线索,以及通过有针对性的补充合理影响动物或人类健康和福祉的新方法。
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引用次数: 0
Implementation of Dunaliella tertiolecta and Desmodesmus communis in a photobioreactor prototype for treatment of wastewater in a recirculating aquaculture system 在光生物反应器原型中处理循循环水产养殖系统中的废水
IF 3.6 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-01 DOI: 10.1016/j.crbiot.2025.100314
Kathleen P. Nolan, Jordan Roszell, Robert H. Hanner, Andreas Heyland
Inline photobioreactors (PBRs) are a promising tool for nutrient removal from aquacultural wastewater and production of valuable algal biomass, yet few PBR systems have been rigorously tested. Optimization of algal growth screening across species and strains of interest under specific water conditions is crucial but time-consuming, limiting PBR implementation. Here, we developed a high-throughput screening system to efficiently test algal growth under various nutrient treatments, with the goal of informing implementation in a PBR designed for wastewater treatment in recirculating aquaculture systems (RAS). We assessed growth of the marine alga Dunaliella tertiolecta and the freshwater alga Desmodesmus communis under a matrix of inorganic nitrogen (N) treatments in 96-well plates. We then tested ammonium transfer within a prototype PBR for RAS wastewater treatment and evaluated the batch growth response of D. tertiolecta to ammonium treatments in the PBR. Both species grew on the provided inorganic N sources, showing significant differences in response to N treatments due to species-driven variations in nitrogen uptake and storage mechanisms. D. tertiolecta thrived when grown individually on either nitrate or ammonium, while D. communis favored a combination of N sources. D. tertiolecta showed a 5.4% higher growth rate in nitrate than ammonium. Both species grew in nutrient-free controls, suggesting potential use of internal nutrient reserves. D. tertiolecta grew within the PBR, serving as proof-of-concept for algal cultivation in the prototype. This study supports PBR technology for enhancing food production systems and protecting food security through RAS wastewater treatment.
嵌入式光生物反应器(PBR)是一种很有前途的从水产养殖废水中去除营养物质和生产有价值的藻类生物质的工具,但很少有PBR系统经过严格的测试。在特定的水条件下,跨物种和菌株的藻类生长筛选优化是至关重要的,但耗时,限制了PBR的实施。在这里,我们开发了一个高通量筛选系统,以有效地测试各种营养处理下的藻类生长,目的是为循环水养殖系统(RAS)废水处理设计的PBR的实施提供信息。研究了96孔板中无机氮(N)基质下海洋藻类Dunaliella terolecta和淡水藻类Desmodesmus communis的生长情况。然后,我们在一个原型PBR中测试了氨转移,用于RAS废水处理,并评估了PBR中氨处理对D. tertiolecta的批量生长响应。两个物种在提供的无机氮源上生长,由于物种驱动的氮素吸收和储存机制的差异,对氮素处理的响应存在显著差异。在硝酸盐或铵源上单独生长时,三叶蓟马都能茁壮成长,而群落蓟马则更倾向于组合氮源。在硝态氮中的生长速率比铵态氮的生长速率高5.4%。这两个物种都生长在无营养的环境中,这表明它们可能利用体内的营养储备。D. tertiolecta在PBR内生长,作为原型中藻类培养的概念证明。本研究支持PBR技术通过RAS废水处理加强粮食生产系统和保护粮食安全。
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引用次数: 0
Innovative chemical biology tools for monitoring activity in complex microbiomes 用于监测复杂微生物组活性的创新化学生物学工具
IF 4 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-01 DOI: 10.1016/j.crbiot.2025.100334
Yumechris Amekan , Kelly R. Redeker , James P.J. Chong
The functional analysis of complex microbiomes is hindered by their cellular heterogeneity and dynamic interactions. Conventional approaches often lack the resolution to resolve the metabolic activity of individual cells in situ. Recent advances in chemical biology have introduced powerful tools—such as bioorthogonal chemistry, stable isotope probing (SIP), and single-cell phenotyping—that enable non-destructive, high-resolution profiling of microbial activity across diverse ecosystems. These techniques bridge the gap between genotype and phenotype by targeting translational and metabolic functions in live cells, including uncultured or low-abundance taxa. This review outlines the principles, applications, and current limitations of these tools, including challenges in probe biocompatibility, throughput, and spectral or isotopic data analysis. We highlight recent innovations, including BONCAT-FACS integration, automated SIP platforms, and microfluidic Raman-activated cell sorting (RACS), which enhance analytical scalability. Emphasis is placed on the integration of chemical biology tools with multi-omics workflows to generate causal insights into microbial function. By addressing key technical and analytical barriers, these tools promise to expand our capacity to monitor and manipulate microbiomes for applications in ecology, biotechnology, and health. Their continued development will be critical for unlocking the functional potential of microbial communities across environmental and engineered systems.
复杂微生物组的功能分析受到其细胞异质性和动态相互作用的阻碍。传统的方法往往缺乏解决单个细胞的代谢活动原位。化学生物学的最新进展引入了强大的工具,如生物正交化学、稳定同位素探测(SIP)和单细胞表型,这些工具可以对不同生态系统中的微生物活动进行非破坏性的高分辨率分析。这些技术通过靶向活细胞(包括未培养或低丰度的分类群)的翻译和代谢功能,弥合了基因型和表型之间的差距。本文概述了这些工具的原理、应用和当前的局限性,包括探针生物相容性、通量和光谱或同位素数据分析方面的挑战。我们重点介绍了最近的创新,包括boncats - facs集成、自动化SIP平台和微流控拉曼激活细胞分选(RACS),这些都提高了分析的可扩展性。重点放在化学生物学工具与多组学工作流程的整合上,以产生对微生物功能的因果见解。通过解决关键的技术和分析障碍,这些工具有望扩大我们监测和操纵微生物组的能力,以应用于生态学、生物技术和健康。它们的持续发展对于释放环境和工程系统中微生物群落的功能潜力至关重要。
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引用次数: 0
Neurotensin(8-13) analogs targeting NTS1 and NTS2 receptors: A comparative in vitro and molecular modeling study 靶向NTS1和NTS2受体的神经紧张素(8-13)类似物:体外和分子模型的比较研究
IF 3.6 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-01-01 DOI: 10.1016/j.crbiot.2025.100298
Kiril Kirilov , Maria Ponticelli , Toni Kühl , Harald Hübner , Maya G. Georgieva , Matthias Vogel , Aneliya A. Balacheva , Bodo Haas , Tamara I. Pajpanova , Maima Matin , Luigi Milella , Peter Gmeiner , Diana Imhof , Nikolay T. Tzvetkov
The simultaneous activation of both neurotensin type 1 and 2 receptors (NTS1R and NTS2R) through the neuronal peptide neurotensin (NT), activating the dopamine (DA) release and DA signaling within the dopaminergic system in the brain, suggest that NTS1R/NTS2R dual-specific NT analogs may represent an attractive tool in the treatment of Parkinson’s disease (PD) and/or other related conditions. Herein, we report in silico exploration of NTS1R and NTS2R driven by in vitro pharmacological evaluation of the linear hexapeptide NT analogs 3 (sequence Lys8-Cav9-Pro10-Tyr11-Ile12-Leu13) and 6 (Arg8-Cav9-Pro10-Tyr11-Ile12-Leu13), both active towards the human NTS1R and NTS2R. Compared to the parent peptide NT(8–13) (2), compounds 3 and 6 showed improved in vitro human plasma stability and BBB permeability. Moreover, in silico ADMET evaluation indicated that both NT-analogs have strong pharmacological properties combined with good safety profiles, highlighting their potential for further structural improvements. Furthermore, we applied an AI-based approach to generate the homology models of hNTS1R and hNTS2R, followed by MD simulations of their ligand-free state and molecular docking in order to estimate the most probable protein–ligand complexes of peptides 3 and 6. Binding interaction/affinity analysis of the best-ranked docking modes, obtained with selected time-frames from the respective MD trajectories, suggest that the receptor activation occurs via a ligand-receptor binding into the initial “entry” conformation of hNTS1R and hNTS2R. This assumption is supported by additional HYDE analysis confirming the binding affinities of peptides 3 and 6 towards hNTS1R and hNTS2R obtained by radioligand binding experiments. The reported study may serve as a ready-to-use in silico approach for further development of therapeutic options against PD and potentially other neurological disorders.
通过神经元肽神经紧张素(NT)同时激活神经紧张素1型和2型受体(NTS1R和NTS2R),激活多巴胺(DA)释放和大脑多巴胺能系统内的DA信号,表明NTS1R/NTS2R双特异性NT类似物可能是治疗帕金森病(PD)和/或其他相关疾病的有吸引力的工具。本文通过对线状六肽NT类似物3(序列Lys8-Cav9-Pro10-Tyr11-Ile12-Leu13)和6(序列Arg8-Cav9-Pro10-Tyr11-Ile12-Leu13)的体外药理学评价,对NTS1R和NTS2R进行了芯片探索,这两个类似物都对人类NTS1R和NTS2R有活性。与母体肽NT(8-13)(2)相比,化合物3和6显示出体外人血浆稳定性和血脑屏障通透性的改善。此外,计算机ADMET评估表明,这两种nt -类似物具有强大的药理特性和良好的安全性,突出了它们进一步结构改进的潜力。此外,我们应用基于人工智能的方法生成hNTS1R和hNTS2R的同源性模型,然后对它们的无配体状态和分子对接进行MD模拟,以估计肽3和肽6最可能的蛋白质-配体复合物。结合相互作用/亲和分析的最佳对接模式,从各自的MD轨迹中选择的时间框架中获得,表明受体激活是通过配体-受体结合到hNTS1R和hNTS2R的初始“进入”构象中发生的。另外的HYDE分析证实了肽3和6对hNTS1R和hNTS2R的结合亲和力,这一假设得到了支持。该报告的研究可以作为一种现成的计算机方法,用于进一步开发针对PD和潜在的其他神经系统疾病的治疗选择。
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Current Research in Biotechnology
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