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On Recombination. 关于重组
IF 1.6 4区 计算机科学 Q4 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2024-10-11 DOI: 10.1162/artl_a_00453
Larry Bull

The predominant explanations for including chromosomal recombination during meiosis are that it serves as a mechanism for repair or as a mechanism for increased adaptability. However, neither gives a clear immediate selective advantage to the reproducing organism itself. This letter revisits the idea that sex emerged and is maintained because it enables a simple form of fitness landscape smoothing to explain why recombination evolved. Although recombination was originally included in the idea, as with the other explanations, no immediate benefit was identified. That a benefit exists if the dividing cell(s) form a simple colony of the resulting haploids for some time after reproduction is explored here and shown to further increase the benefits of the landscape smoothing process.

在减数分裂过程中进行染色体重组的主要解释是,这是一种修复机制或一种提高适应性的机制。然而,这两种解释都没有给繁殖生物本身带来明显的直接选择性优势。这封信再次提出了一个观点,即性的出现和维持是因为它能使一种简单的适应性景观平滑化,从而解释了重组进化的原因。虽然重组最初也包含在这一观点中,但与其他解释一样,并没有发现直接的益处。如果分裂的细胞在繁殖后的一段时间内形成一个简单的单倍体群落,那么就会产生益处,本文对此进行了探讨,结果表明这将进一步增加景观平滑过程的益处。
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引用次数: 0
(A)Life as It Could Be. (A)可能的生活。
IF 1.6 4区 计算机科学 Q4 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2024-10-11 DOI: 10.1162/artl_a_00455
Randall D Beer

On this 30th anniversary of the founding of the Artificial Life journal, I share some personal reflections on my own history of engagement with the field, my own particular assessment of its current status, and my vision for its future development. At the very least, I hope to stimulate some necessary critical conversations about the field of Artificial Life and where it is going.

值此《人工生命》杂志创刊 30 周年之际,我将与大家分享一些个人感想,包括我参与该领域的历史、我对该领域现状的具体评估以及我对该领域未来发展的愿景。至少,我希望能激发人们对人工生命领域及其发展方向进行一些必要的批判性对话。
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引用次数: 0
Comment on Randall D. Beer's "A(Life) as It Could Be". 评论 Randall D. Beer 的 "A(Life)as It Could Be"。
IF 1.6 4区 计算机科学 Q4 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2024-10-11 DOI: 10.1162/artl_a_00456
Inman Harvey
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引用次数: 0
How Brains Perceive the World. 大脑如何感知世界
IF 1.6 4区 计算机科学 Q4 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2024-10-11 DOI: 10.1162/artl_a_00454
Christoph Adami

Can machines ever be sentient? Could they perceive and feel things, be conscious of their surroundings? What are the prospects of achieving sentience in a machine? What are the dangers associated with such an endeavor, and is it even ethical to embark on such a path to begin with? In the series of articles of this column, I discuss one possible path toward "general intelligence" in machines: to use the process of Darwinian evolution to produce artificial brains that can be grafted onto mobile robotic platforms, with the goal of achieving fully embodied sentient machines.

机器会有知觉吗?它们能感知和感受事物,能意识到周围的环境吗?机器获得感知能力的前景如何?这种努力会带来哪些危险?在本专栏的系列文章中,我将讨论实现机器 "通用智能 "的一种可能途径:利用达尔文进化过程制造人工大脑,并将其嫁接到移动机器人平台上,从而实现完全具身的智能机器。
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引用次数: 0
Survival and Evolutionary Adaptation of Populations Under Disruptive Habitat Change: A Study With Darwinian Cellular Automata. 破坏性生境变化下种群的生存与进化适应:达尔文细胞自动机研究》。
IF 1.6 4区 计算机科学 Q4 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2024-10-11 DOI: 10.1162/artl_a_00457
Hanna Derets, Chrystopher L Nehaniv

The evolution of living beings with continuous and consistent progress toward adaptation and ways to model evolution along principles as close as possible to Darwin's are important areas of focus in Artificial Life. Though genetic algorithms and evolutionary strategies are good methods for modeling selection, crossover, and mutation, biological systems are undeniably spatially distributed processes in which living organisms interact with locally available individuals rather than with the entire population at once. This work presents a model for the survival of organisms during a change in the environment to a less favorable one, putting them at risk of extinction, such as many organisms experience today under climate change or local habitat loss or fragmentation. Local spatial structure of resources and environmental quality also impacts the capacity of an evolving population to adapt. The problem is considered on a probabilistic cellular automaton with update rules based on the principles of genetic algorithms. To carry out simulations according to the described model, the Darwinian cellular automata are introduced, and the software has been designed with the code available open source. An experimental evaluation of the behavioral characteristics of the model was carried out, completed by a critical evaluation of the results obtained, parametrically describing conditions and thresholds under which extinction or survival of the population may occur.

生物在进化过程中不断地、持续地适应环境,以及如何按照尽可能接近达尔文的原则建立进化模型,是人工生命的重要关注领域。虽然遗传算法和进化策略是模拟选择、交叉和变异的好方法,但不可否认的是,生物系统是一个空间分布的过程,在这个过程中,生物体与局部可用的个体相互作用,而不是同时与整个种群相互作用。这项研究提出了一个生物生存模型,用于描述当环境发生变化,变得不利于生物生存,使生物面临灭绝风险时,生物的生存状况,例如当今许多生物在气候变化或局部栖息地丧失或破碎的情况下的生存状况。当地资源和环境质量的空间结构也会影响不断进化的种群的适应能力。该问题是在概率蜂窝自动机上考虑的,其更新规则基于遗传算法原理。为了根据所描述的模型进行模拟,引入了达尔文细胞自动机,并设计了开源代码软件。对模型的行为特征进行了实验评估,并对所获得的结果进行了批判性评估,从参数上描述了种群灭绝或生存可能发生的条件和阈值。
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引用次数: 0
Self-Reproduction and Evolution in Cellular Automata: 25 Years After Evoloops 细胞自动机的自我繁殖与进化:Evoloops 25 年之后
IF 2.6 4区 计算机科学 Q4 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2024-09-13 DOI: 10.1162/artl_a_00451
Hiroki Sayama, Chrystopher L. Nehaniv
The year 2024 marks the 25th anniversary of the publication of evoloops, an evolutionary variant of Chris Langton’s self-reproducing loops, which proved constructively that Darwinian evolution of self-reproducing organisms by variation and natural selection is possible within deterministic cellular automata. Over the last few decades, this line of Artificial Life research has since undergone several important developments. Although it experienced a relative dormancy of activity for a while, the recent rise of interest in open-ended evolution and the success of continuous cellular automata models have brought researchers’ attention back to how to make spatiotemporal patterns self-reproduce and evolve within spatially distributed computational media. This article provides a review of the relevant literature on this topic over the past 25 years and highlights the major accomplishments made so far, the challenges being faced, and promising future research directions.
2024 年是克里斯-兰顿(Chris Langton)的自繁殖循环(self-reproducing loops)的进化变体 evoloops 发表 25 周年,它建设性地证明了在确定性细胞自动机中通过变异和自然选择实现自繁殖生物的达尔文进化是可能的。在过去的几十年里,人工生命研究经历了几个重要的发展阶段。虽然这一领域的研究活动曾一度相对沉寂,但最近人们对开放式进化的兴趣日渐浓厚,连续细胞自动机模型也取得了巨大成功,这些都让研究人员重新关注如何在空间分布式计算介质中实现时空模式的自我复制和进化。本文回顾了过去 25 年来有关这一主题的相关文献,重点介绍了迄今为止取得的主要成就、面临的挑战以及未来有希望的研究方向。
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引用次数: 0
Emergence of Self-Replicating Hierarchical Structures in a Binary Cellular Automaton. 二元细胞自动机中自复制分层结构的出现
IF 1.6 4区 计算机科学 Q4 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2024-08-16 DOI: 10.1162/artl_a_00449
Bo Yang

We have discovered a novel transition rule for binary cellular automata (CAs) that yields self-replicating structures across two spatial and temporal scales from sparse random initial conditions. Lower-level, shape-shifting clusters frequently follow a transient attractor trajectory, generating new clusters, some of which periodically self-duplicate. When the initial distribution of live cells is sufficiently sparse, these clusters coalesce into larger formations that also self-replicate. These formations may further form the boundaries of an expanding complex on an even larger scale. This rule, dubbed "Outlier," is rotationally symmetric and applies to 2-D Moore neighborhoods. It was evolved through genetic programming during an extensive search for rules that foster open-ended evolution in CAs. While self-replicating structures, both crafted and emergent, have been created in CAs with state sets intentionally designed for this purpose, the Outlier may be the first known rule to facilitate nontrivial emergent self-replication across two spatial scales in binary CAs.

我们发现了一种新颖的二元细胞自动机(CA)过渡规则,它能从稀疏的随机初始条件中产生跨越两个空间和时间尺度的自我复制结构。低级的、形状可变的细胞簇经常遵循瞬态吸引子轨迹,产生新的细胞簇,其中一些细胞簇会周期性地自我复制。当活细胞的初始分布足够稀疏时,这些细胞簇会凝聚成更大的形态,这些形态也会自我复制。这些形态可能会进一步形成规模更大的扩展复合体的边界。这种被称为 "离群者 "的规则是旋转对称的,适用于二维摩尔邻域。它是在广泛寻找促进 CA 开放式进化的规则的过程中,通过遗传编程进化而来的。在二元CA中,人们已经通过有意设计的状态集创建了自我复制结构,包括精心制作的和突发的结构,而 "离群者 "可能是第一个在二元CA中促进跨越两个空间尺度的非难突发自我复制的已知规则。
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引用次数: 0
Editorial: Special Issue "The Distributed Ghost"-Cellular Automata, Distributed Dynamical Systems, and Their Applications to Intelligence. 编辑:特刊 "分布式幽灵"--细胞自动机、分布式动力系统及其在智能领域的应用。
IF 1.6 4区 计算机科学 Q4 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2024-08-16 DOI: 10.1162/artl_e_00450
Stefano Nichele, Hiroki Sayama, Eric Medvet, Chrystopher Nehaniv, Mario Pavone
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引用次数: 0
How Perception, Actuation, and Communication Impact the Emergence of Collective Intelligence in Simulated Modular Robots. 感知、执行和交流如何影响仿真模块化机器人集体智慧的形成。
IF 1.6 4区 计算机科学 Q4 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2024-08-15 DOI: 10.1162/artl_a_00447
Francesco Rusin, Eric Medvet

Modular robots are collections of simple embodied agents, the modules, that interact with each other to achieve complex behaviors. Each module may have a limited capability of perceiving the environment and performing actions; nevertheless, by behaving coordinately, and possibly by sharing information, modules can collectively perform complex actions. In principle, the greater the actuation, perception, and communication abilities of the single module are the more effective is the collection of modules. However, improved abilities also correspond to more complex controllers and, hence, larger search spaces when designing them by means of optimization. In this article, we analyze the impact of perception, actuation, and communication abilities on the possibility of obtaining good controllers for simulated modular robots, that is, controllers that allow the robots to exhibit collective intelligence. We consider the case of modular soft robots, where modules can contract, expand, attach, and detach from each other, and make them face two tasks (locomotion and piling), optimizing their controllers with evolutionary computation. We observe that limited abilities often do not prevent the robots from succeeding in the task, a finding that we explain with (a) the smaller search space corresponding to limited actuation, perception, and communication abilities, which makes the optimization easier, and (b) the fact that, for this kind of robot, morphological computation plays a significant role. Moreover, we discover that what matters more is the degree of collectivity the robots are required to exhibit when facing the task.

模块机器人是由简单的实体代理(即模块)组成的集合体,模块之间相互影响,从而实现复杂的行为。每个模块感知环境和执行动作的能力可能有限;然而,通过协调行为和可能的信息共享,模块可以集体执行复杂的动作。原则上讲,单个模块的执行、感知和通信能力越强,模块集合就越有效。然而,能力越强,控制器也就越复杂,因此在通过优化手段设计控制器时,搜索空间也就越大。在本文中,我们分析了感知、执行和通信能力对模拟模块化机器人获得良好控制器的可能性的影响,也就是能让机器人表现出集体智能的控制器。我们考虑了模块化软体机器人的情况,模块之间可以收缩、扩张、连接和分离,并让它们面对两项任务(运动和打桩),用进化计算优化它们的控制器。我们发现,有限的能力往往并不妨碍机器人成功完成任务,我们对这一发现的解释是:(a)有限的执行、感知和通信能力对应较小的搜索空间,这使得优化更容易;(b)对于这种机器人,形态计算发挥了重要作用。此外,我们还发现,更重要的是机器人在面对任务时需要表现出的集体主义精神。
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引用次数: 0
Evolving Novel Gene Regulatory Networks for Structural Engineering Designs. 为结构工程设计开发新的基因调控网络
IF 1.6 4区 计算机科学 Q4 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2024-08-15 DOI: 10.1162/artl_a_00448
Rahul Dubey, Simon Hickinbotham, Andrew Colligan, Imelda Friel, Edgar Buchanan, Mark Price, Andy M Tyrrell

Engineering design optimization poses a significant challenge, usually requiring human expertise to discover superior solutions. Although various search techniques have been employed to generate diverse designs, their effectiveness is often limited by problem-specific parameter tuning, making them less generalizable and scalable. This article introduces a framework inspired by evolutionary and developmental (evo-devo) concepts, aiming to automate the evolution of structural engineering designs. In biological systems, evo-devo governs the growth of single-cell organisms into multicellular organisms through the use of gene regulatory networks (GRNs). GRNs are inherently complex and highly nonlinear, and this article explores the use of neural networks and genetic programming as artificial representations of GRNs to emulate such behaviors. To evolve a wide range of Pareto fronts for artificial GRNs, this article introduces a new technique, a real value-encoded neuroevolutionary method termed real-encoded NEAT (RNEAT). The performance of RNEAT is compared with that of two well-known evolutionary search techniques across different 2-D and 3-D problems. The experimental results demonstrate two key findings. First, the proposed framework effectively generates a population of GRNs that can produce diverse structures for both 2-D and 3-D problems. Second, the proposed RNEAT algorithm outperforms its competitors on more than 50% of the problems examined. These results validate the proof of concept underlying the proposed evo-devo-based engineering design evolution.

工程设计优化是一项巨大的挑战,通常需要人类的专业知识来发现优秀的解决方案。虽然人们已经采用了各种搜索技术来生成多样化的设计,但它们的有效性往往受到特定问题参数调整的限制,因此通用性和可扩展性较差。本文介绍了一个受进化和发展(evo-devo)概念启发的框架,旨在实现结构工程设计的自动进化。在生物系统中,进化-退化通过使用基因调控网络(GRN)来控制单细胞生物向多细胞生物的生长。基因调控网络本质上是复杂和高度非线性的,本文探讨了如何利用神经网络和遗传编程作为基因调控网络的人工代表来模拟这种行为。为了为人工 GRN 演化出各种帕累托前沿,本文介绍了一种新技术,即实值编码神经进化法,称为实值编码神经进化法(RNEAT)。在不同的二维和三维问题上,RNEAT 的性能与两种著名的进化搜索技术进行了比较。实验结果证明了两个重要发现。首先,所提出的框架能有效生成 GRNs 群体,从而为二维和三维问题生成多样化的结构。其次,所提出的 RNEAT 算法在超过 50% 的问题上优于其竞争对手。这些结果验证了所提出的基于进化发展的工程设计进化概念。
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Artificial Life
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