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A Genetic Perspective on Cetacean Evolution 鲸类动物进化的遗传学观点
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-20 DOI: 10.1146/annurev-ecolsys-012021-105003
A. Cabrera, M. Bérubé, Xênia M Lopes, M. Louis, T. Oosting, A. Rey-Iglesia, Vania E. Rivera-León, D. Székely, E. Lorenzen, P. Palsbøll
Studies of cetacean evolution using genetics and other biomolecules have come a long way—from the use of allozymes and short sequences of mitochondrial or nuclear DNA to the assembly of full nuclear genomes and characterization of proteins and lipids. Cetacean research has also advanced from using only contemporary samples to analyzing samples dating back thousands of years, and to retrieving data from indirect environmental sources, including water or sediments. Combined, these studies have profoundly deepened our understanding of the origin of cetaceans; their adaptation and speciation processes; and of the past population change, migration, and admixture events that gave rise to the diversity of cetaceans found today. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
利用遗传学和其他生物分子研究鲸类动物的进化已经走过了漫长的道路——从使用同酶和线粒体或核DNA的短序列到组装完整的核基因组和表征蛋白质和脂质。鲸类动物的研究也从只使用当代样本发展到分析几千年前的样本,并从间接的环境来源(包括水或沉积物)中检索数据。综合起来,这些研究深刻地加深了我们对鲸类动物起源的理解;它们的适应和物种形成过程;以及过去的种群变化、迁徙和混合事件,这些事件产生了今天发现的鲸类动物的多样性。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 8
The Invisible Hand of the Periodic Table: How Micronutrients Shape Ecology 元素周期表的无形之手:微量元素如何塑造生态
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-20 DOI: 10.1146/annurev-ecolsys-012021-090118
M. Kaspari
Beyond the better-studied carbohydrates and the macronutrients nitrogen and phosphorus, a remaining 20 or so elements are essential for life and have distinct geographical distributions, making them of keen interest to ecologists. Here, I provide a framework for understanding how shortfalls in micronutrients like iodine, copper, and zinc can regulate individual fitness, abundance, and ecosystem function. With a special focus on sodium, I show how simple experiments manipulating biogeochemistry can reveal why many of the variables that ecologists study vary so dramatically from place to place. I conclude with a discussion of how the Anthropocene's changing temperature, precipitation, and atmospheric CO2 levels are contributing to nutrient dilution (decreases in the nutrient quality at the base of food webs). Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
除了研究得比较透彻的碳水化合物和大量营养元素氮和磷之外,还有大约20种元素是生命所必需的,它们具有不同的地理分布,使它们成为生态学家的浓厚兴趣。在这里,我提供了一个框架来理解像碘、铜和锌这样的微量营养素的缺乏是如何调节个体健康、丰度和生态系统功能的。通过对钠的特别关注,我展示了操纵生物地球化学的简单实验如何揭示了生态学家研究的许多变量在不同地方差异如此之大的原因。最后,我讨论了人类世不断变化的温度、降水和大气二氧化碳水平是如何导致营养物质稀释的(食物网底部营养物质质量的降低)。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 34
Demographic Consequences of Phenological Shifts in Response to Climate Change 气候变化对物候变化的人口影响
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-20 DOI: 10.1146/annurev-ecolsys-011921-032939
A. Iler, Paul J. CaraDonna, J. Forrest, E. Post
When a phenological shift affects a demographic vital rate such as survival or reproduction, the altered vital rate may or may not have population-level consequences. We review the evidence that climate change affects populations by shifting species’ phenologies, emphasizing the importance of demographic life-history theory. We find many examples of phenological shifts having both positive and negative consequences for vital rates. Yet, few studies link phenological shifts to changes in vital rates known to drive population dynamics, especially in plants. When this link is made, results are largely consistent with life-history theory: Phenological shifts have population-level consequences when they affect survival in longer-lived organisms and reproduction in shorter-lived organisms. However, there are just as many cases in which demographic mechanisms buffer population growth from phenologically induced changes in vital rates. We provide recommendations for future research aiming to understand the complex relationships among climate, phenology, and demography, which will help to elucidate the extent to which phenological shifts actually alter population persistence. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
当物候变化影响人口的生命率,如生存或繁殖时,生命率的改变可能会也可能不会产生人口水平的后果。我们回顾了气候变化通过改变物种物候来影响种群的证据,强调了人口生活史理论的重要性。我们发现物候变化的许多例子对生命率有积极和消极的影响。然而,很少有研究将物候变化与已知的驱动种群动态的生命速率变化联系起来,特别是在植物中。当这种联系被建立时,结果在很大程度上与生活史理论一致:物候变化在影响寿命较长的生物体的生存和寿命较短的生物体的繁殖时,具有种群水平的后果。然而,在同样多的情况下,人口机制使人口增长不受物候引起的生命率变化的影响。我们为未来的研究提供了建议,旨在了解气候、物候和人口统计学之间的复杂关系,这将有助于阐明物候变化在多大程度上改变种群持久性。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 51
Plant Communication 工厂沟通
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-10 DOI: 10.1146/annurev-ecolsys-010421-020045
R. Karban
Communication occurs when a sender emits a cue perceived by a receiver that changes the receiver's behavior. Plants perceive information regarding light, water, other nutrients, touch, herbivores, pathogens, mycorrhizae, and nitrogen-fixing bacteria. Plants also emit cues perceived by other plants, beneficial microbes, herbivores, enemies of herbivores, pollinators, and seed dispersers. Individuals responding to light cues experienced increased fitness. Evidence for benefits of responding to cues involving herbivores and pathogens is more limited. The benefits of emitting cues are also less clear, particularly for plant–plant communication. Reliance on multiple or dosage-dependent cues can reduce inappropriate responses, and plants often remember past cues. Plants have multiple needs and prioritize conflicting cues such that the risk of abiotic stress is treated as greater than that of shading, which is in turn treated as greater than that of consumption. Plants can distinguish self from nonself and kin from strangers. They can identify the species of competitor or consumer and respond appropriately. Cues involving mutualists often contain highly specific information. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
当发送者发出被接收者感知到的改变接收者行为的提示时,通信就发生了。植物感知光、水、其他营养物质、触摸、食草动物、病原体、菌根和固氮细菌等信息。植物也会发出被其他植物、有益微生物、食草动物、食草动物的敌人、传粉者和种子传播者感知的信号。对光线有反应的个体的适应性增强了。对涉及食草动物和病原体的线索作出反应的益处的证据更为有限。发出信号的好处也不太清楚,特别是对于植物间的交流。依赖于多种或剂量依赖的线索可以减少不适当的反应,植物通常会记住过去的线索。植物有多种需求,并优先考虑相互冲突的线索,因此非生物胁迫的风险被视为大于遮阳的风险,而遮阳的风险又被视为大于消耗的风险。植物可以区分自我与非我,亲属与陌生人。他们可以识别竞争对手或消费者的种类,并作出适当的反应。涉及互惠者的线索通常包含高度具体的信息。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 19
The Ecological Importance of Allelopathy 化感作用的生态学意义
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-10 DOI: 10.1146/annurev-ecolsys-051120-030619
J. Hierro, R. Callaway
Allelopathy (i.e., chemical interaction among species) was originally conceived as inclusive of positive and negative effects of plants on other plants, and we adopt this view. Most studies of allelopathy have been phenomenological, but we focus on studies that have explored the ecological significance of this interaction. The literature suggests that studies of allelopathy have been particularly important for three foci in ecology: species distribution, conditionality of interactions, and maintenance of species diversity. There is evidence that allelopathy influences local distributions of plant species around the world. Allelopathic conditionality appears to arise through coevolution, and this is a mechanism for plant invasions. Finally, allelopathy promotes species coexistence via intransitive competition, modifications of direct interactions, and (co)evolution. Recent advances additionally suggest that coexistence might be favored through biochemical recognition. The preponderance of phenomenological studies notwithstanding, allelopathy has broad ecological consequences. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
化感作用(即物种之间的化学相互作用)最初被认为包括植物对其他植物的积极和消极影响,我们采用了这一观点。大多数化感作用的研究都是现象学的,但我们关注的是探索这种相互作用的生态意义的研究。文献表明,化感作用的研究在生态学的三个领域尤为重要:物种分布、相互作用的条件性和物种多样性的维持。有证据表明化感作用影响着世界各地植物物种的局部分布。化感条件似乎是通过共同进化产生的,这是植物入侵的一种机制。最后,化感作用通过非传递竞争、直接相互作用的修改和(共同)进化促进物种共存。最近的进展还表明,共存可能通过生物化学识别。尽管现象学研究占据优势,化感作用具有广泛的生态影响。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 36
Ancient Invaders: How Paleogenetic Tools Help to Identify and Understand Biological Invasions of the Past 古代入侵者:古遗传学工具如何帮助识别和理解过去的生物入侵
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-10 DOI: 10.1146/annurev-ecolsys-012021-100938
M. Knapp, Catherine J. Collins, E. Matisoo-Smith
Past biological invasions have contributed to shaping our present day biodiversity. For many island ecosystems, they are the only source of terrestrial life. At the same time, biological invasions, in particular when caused by human activity, are a major concern for the conservation of native species. It is therefore essential to understand the drivers of biological invasions as well as the role invasions have played in different ecosystems. Molecular tools have provided valuable data to reconstruct biological invasions, their drivers, and their impacts. Recent technological developments have further increased the potential of molecular tools to track past shifts in biodiversity. Here, we provide a perspective on how such molecular tools have influenced our understanding of past biological invasions and discuss how they may further help to shape our understanding and management of biological invasions. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
过去的生物入侵有助于塑造我们今天的生物多样性。对于许多岛屿生态系统来说,它们是陆地生命的唯一来源。与此同时,生物入侵,特别是由人类活动引起的入侵,是保护本地物种的一个主要问题。因此,了解生物入侵的驱动因素以及入侵在不同生态系统中所扮演的角色至关重要。分子工具为重建生物入侵、其驱动因素及其影响提供了有价值的数据。最近的技术发展进一步增加了分子工具追踪生物多样性过去变化的潜力。在这里,我们提供了一个关于这些分子工具如何影响我们对过去生物入侵的理解的观点,并讨论了它们如何进一步帮助塑造我们对生物入侵的理解和管理。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 2
The Biology of Chernobyl 切尔诺贝利的生物学
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-10 DOI: 10.1146/annurev-ecolsys-110218-024827
Timothy A Mousseau
Environmental disasters offer the unique opportunity for landscape-scale ecological and evolutionary studies that are not possible in the laboratory or small experimental plots. The nuclear accident at Chernobyl (1986) allows for rigorous analyses of radiation effects on individuals and populations at an ecosystem scale. Here, the current state of knowledge related to populations within the Chernobyl region of Ukraine and Belarus following the largest civil nuclear accident in history is reviewed. There is now a significant literature that provides contrasting and occasionally conflicting views of the state of animals and how they are affected by this mutagenic stressor. Studies of genetic and physiological effects have largely suggested significant injuries to individuals inhabiting the more radioactive areas of the Chernobyl region. Most population censuses for most species suggest that abundances are reduced in the more radioactive areas. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
环境灾害为景观尺度的生态和进化研究提供了独特的机会,而这在实验室或小的实验地块上是不可能的。切尔诺贝利核事故(1986年)允许在生态系统尺度上对辐射对个人和种群的影响进行严格的分析。本文回顾了历史上最大的民用核事故发生后,乌克兰和白俄罗斯切尔诺贝利地区人口的现状。现在有一个重要的文献提供了动物状态的对比和偶尔相互矛盾的观点,以及它们是如何受到这种诱变压力源的影响的。对遗传和生理影响的研究在很大程度上表明,居住在切尔诺贝利地区放射性较强地区的个人受到了重大伤害。大多数物种的人口普查表明,在放射性更强的地区,丰度会减少。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 12
Why Are Species’ Traits Weak Predictors of Range Shifts? 为什么物种特征是范围变化的弱预测因子?
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-10 DOI: 10.1146/annurev-ecolsys-012021-092849
S. Beissinger, E. Riddell
We examine the evidence linking species’ traits to contemporary range shifts and find they are poor predictors of range shifts that have occurred over decades to a century. We then discuss reasons for the poor performance of traits for describing interspecific variation in range shifts from two perspectives: ( a) factors associated with species’ traits that degrade range-shift signals stemming from the measures used for species’ traits, traits that are typically not analyzed, and the influence of phylogeny on range-shift potential and ( b) issues in quantifying range shifts and relating them to species’ traits due to imperfect detection of species, differences in the responses of altitudinal and latitudinal ranges, and emphasis on testing linear relationships between traits and range shifts instead of nonlinear responses. Improving trait-based approaches requires a recognition that traits within individuals interact in unexpected ways and that different combinations of traits may be functionally equivalent. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
我们研究了将物种特征与当代范围转移联系起来的证据,发现它们不能很好地预测几十年到一个世纪以来发生的范围转移。然后,我们从两个角度讨论了描述范围变化中种间变异的性状表现不佳的原因:(a)与物种特征相关的因素,这些因素会降低范围转移信号,这些信号源于对物种特征的测量,通常未被分析的特征,以及系统发育对范围转移潜力的影响;(b)由于物种检测不完善,在量化范围转移并将其与物种特征联系起来方面存在问题,以及海拔和纬度范围的响应差异;并且强调测试性状与距离位移之间的线性关系,而不是非线性响应。改进基于特征的方法需要认识到个体内部的特征以意想不到的方式相互作用,并且特征的不同组合可能在功能上是相同的。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 29
From Insects to Frogs, Egg–Juvenile Recruitment Can have Persistent Effects on Population Sizes 从昆虫到青蛙,卵苗的繁殖对种群规模有持久的影响
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-01-01 DOI: 10.1146/ANNUREV-ECOLSYS-122420-102909
B. Downes, B. Peckarsky, J. Lancaster, W. Bovill, M. Alp
Understanding what regulates population sizes of organisms with complex life cycles is challenging because limits on population sizes can occur at any stage or transition. We extend a conceptual framework to explore whether numbers of successfully laid eggs determine densities of later stages in insects, fish, amphibians, and snails inhabiting marine, freshwater, or terrestrial habitats. Our review suggests novel hypotheses, which propose characteristics of species or environments that create spatial variation in egg densities and predict when such patterns are maintained throughout subsequent life-cycle stages. Existing data, although limited, suggest that persistent, strong associations between egg and subsequent juvenile densities are likely for species where suitable egg-laying habitat is in short supply. Those associations are weakened in some environments and for some species by density-dependent losses of eggs or hatchlings. Such cross-ecosystem comparisons are fundamental to generality in ecology but demand place-based understandings of species’ biology and natural history. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
了解具有复杂生命周期的生物体的种群规模是具有挑战性的,因为种群规模的限制可能发生在任何阶段或过渡时期。我们扩展了一个概念框架,以探索成功产卵的数量是否决定了居住在海洋、淡水或陆地栖息地的昆虫、鱼类、两栖动物和蜗牛的后期密度。我们的综述提出了一些新的假设,这些假设提出了物种或环境的特征,这些特征造成了卵密度的空间变化,并预测了这种模式在随后的生命周期阶段何时保持。现有的数据虽然有限,但表明在适合产卵的栖息地缺乏的物种中,卵和随后的幼鱼密度之间可能存在持久的、强烈的联系。在某些环境中,对于某些物种来说,由于卵或幼崽的密度依赖损失,这些联系被削弱了。这种跨生态系统的比较对生态学的普遍性至关重要,但需要对物种生物学和自然历史有基于地点的理解。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 5
The Rules of Attraction: The Necessary Role of Animal Cognition in Explaining Conservation Failures and Successes 吸引力的规则:动物认知在解释保护失败和成功中的必要作用
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2020-11-02 DOI: 10.1146/annurev-ecolsys-011720-103212
Alison L. Greggor, O. Berger‐Tal, D. Blumstein
Integrating knowledge and principles of animal behavior into wildlife conservation and management has led to some concrete successes but has failed to improve conservation outcomes in other cases. ...
将动物行为的知识和原则整合到野生动物保护和管理中已经取得了一些具体的成功,但在其他情况下未能改善保护结果. ...
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引用次数: 21
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Annual Review of Ecology, Evolution, and Systematics
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