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The Emerging Phylogenetic Perspective on the Evolution of Actinopterygian Fishes 放光鳍类鱼类进化的系统发育新观点
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-09-03 DOI: 10.1146/annurev-ecolsys-122120-122554
A. Dornburg, T. Near
The emergence of a new phylogeny of ray-finned fishes at the turn of the twenty-first century marked a paradigm shift in understanding the evolutionary history of half of living vertebrates. We review how the new ray-finned fish phylogeny radically departs from classical expectations based on morphology. We focus on evolutionary relationships that span the backbone of ray-finned fish phylogeny, from the earliest divergences among teleosts and nonteleosts to the resolution of major lineages of Percomorpha. Throughout, we feature advances gained by the new phylogeny toward a broader understanding of ray-finned fish evolutionary history and the implications for topics that span from the genetics of human health to reconsidering the concept of living fossils. Additionally, we discuss conceptual challenges that involve reconciling taxonomic classification with phylogenetic relationships and propose an alternate higher-level classification for Percomorpha. Our review highlights remaining areas of phylogenetic uncertainty and opportunities for comparative investigations empowered by this new phylogenetic perspective on ray-finned fishes. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
在21世纪之交,鳍状鱼类新系统发育的出现标志着对一半现存脊椎动物进化史的理解范式的转变。我们回顾了新的鳍鱼系统发育如何从根本上背离基于形态学的经典期望。我们专注于跨越鳍鱼系统发育主干的进化关系,从最早的硬骨鱼和非硬骨鱼之间的分歧到硬骨鱼主要谱系的解决。在整个过程中,我们将介绍新的系统发育所取得的进展,以更广泛地了解鳍鱼的进化史,并对从人类健康遗传学到重新考虑活化石概念的主题产生影响。此外,我们讨论了涉及调和分类学分类与系统发育关系的概念性挑战,并提出了Percomorpha的另一种更高层次的分类。我们的综述突出了系统发育不确定性的剩余领域,并通过这种新的系统发育视角对鳍鱼进行了比较调查。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 36
Sensory and Cognitive Ecology of Bats 蝙蝠的感觉和认知生态学
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-09-03 DOI: 10.1146/annurev-ecolsys-012921-052635
R. Page, Hannah M. ter Hofstede
We see stunning morphological diversity across the animal world. Less conspicuous but equally fascinating are the sensory and cognitive adaptations that determine animals’ interactions with their environments and each other. We discuss the development of the fields of sensory and cognitive ecology and the importance of integrating these fields to understand the evolution of adaptive behaviors. Bats, with their extraordinarily high ecological diversity, are ideal animals for this purpose. An explosion in recent research allows for better understanding of the molecular, genetic, neural, and behavioral bases for sensory ecology and cognition in bats. We give examples of studies that illuminate connections between sensory and cognitive features of information filtering, evolutionary trade-offs in sensory and cognitive processing, and multimodal sensing and integration. By investigating the selective pressures underlying information acquisition, processing, and use in bats, we aim to illuminate patterns and processes driving sensory and cognitive evolution. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
我们在动物世界看到了惊人的形态多样性。不那么引人注目但同样引人入胜的是决定动物与环境以及彼此之间相互作用的感官和认知适应。我们讨论了感觉和认知生态学领域的发展,以及整合这些领域对理解适应行为进化的重要性。具有高度生态多样性的蝙蝠是实现这一目标的理想动物。最近研究的爆炸式增长使我们能够更好地了解蝙蝠感觉生态学和认知的分子、遗传、神经和行为基础。我们举例说明了信息过滤的感觉和认知特征之间的联系,感觉和认知处理的进化权衡,以及多模态感知和整合。通过研究蝙蝠信息获取、处理和使用背后的选择压力,我们旨在阐明驱动感觉和认知进化的模式和过程。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 7
Evolution of Mimicry Rings as a Window into Community Dynamics 拟态环的进化是群落动态的一个窗口
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-09-03 DOI: 10.1146/annurev-ecolsys-012021-024616
Krushnamegh Kunte, A. G. Kizhakke, Viraj Nawge
Mimicry rings are communities of mimetic organisms that are excellent models for ecological and evolutionary studies because the community composition, the nature of the species interactions, the phenotypes under selection, and the selective agents are well characterized. Here, we review how regional and ecological filtering, density- and frequency-dependent selection, toxicity of prey, and age of mimicry rings shape their assembly. We synthesize findings from theoretical and empirical studies to generate the following hypotheses: ( a) the degree of unpalatability and age of mimicry rings increase mimicry ring size and ( b) the degree of unpalatability, generalization of the aposematic signal, and availability of alternative prey are positively related to the breadth of the protection umbrella for an aposematic signal and negatively related to the degree of mimetic resemblance. We also provide a phylogenetic framework in which key aspects of mimicry ring diversification may be studied. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
拟态环是拟态生物的群落,是生态学和进化研究的优秀模型,因为群落组成、物种相互作用的性质、选择下的表型和选择因子都得到了很好的表征。在这里,我们回顾了区域和生态过滤、密度和频率依赖的选择、猎物的毒性和模仿环的年龄如何塑造它们的组合。我们综合了理论和实证研究的结果,得出以下假设:(a)模仿环的不适口程度和年龄增加了模仿环的大小;(b)不适口程度、警告信号的泛化程度和替代猎物的可用性与警告信号的保护伞宽度呈正相关,与模仿相似程度负相关。我们还提供了一个系统发育框架,其中模仿环多样化的关键方面可以研究。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 8
The Alignment of Natural and Sexual Selection 自然选择和性选择的一致性
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-31 DOI: 10.1146/annurev-ecolsys-012021-033324
L. Rowe, H. Rundle
Sexual selection has the potential to decrease mean fitness in a population through an array of costs to nonsexual fitness. These costs may be offset when sexual selection favors individuals with high nonsexual fitness, causing the alignment of sexual and natural selection. We review the many laboratory experiments that have manipulated mating systems aimed at quantifying the net effects of sexual selection on mean fitness. These must be interpreted in light of population history and the diversity of ways manipulations have altered sexual interactions, sexual conflict, and sexual and natural selection. Theory and data suggest a net benefit is more likely when sexually concordant genetic variation is enhanced and that ecological context can mediate the relative importance of these different effects. Comparative studies have independently examined the consequences of sexual selection for population/species persistence. These provide little indication of a benefit, and interpreting these higher-level responses is challenging. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
通过一系列非性适应的代价,性选择有可能降低种群的平均适应度。当性选择倾向于具有高非性适应性的个体时,这些成本可能会被抵消,从而导致性选择和自然选择的一致。我们回顾了许多操纵交配系统的实验室实验,这些实验旨在量化性选择对平均适合度的净影响。这些必须根据人口历史和操纵方式的多样性来解释,这些方式改变了性互动、性冲突、性选择和自然选择。理论和数据表明,当两性和谐的遗传变异得到增强,生态环境可以调节这些不同影响的相对重要性时,净收益更有可能出现。比较研究独立地考察了性选择对种群/物种持久性的影响。这些几乎没有提供益处的迹象,并且解释这些更高层次的反应是具有挑战性的。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 14
Evolution in Cities 城市的进化
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-31 DOI: 10.1146/annurev-ecolsys-012021-021402
S. Diamond, Ryan Andrew Martin
Although research performed in cities will not uncover new evolutionary mechanisms, it could provide unprecedented opportunities to examine the interplay of evolutionary forces in new ways and new avenues to address classic questions. However, while the variation within and among cities affords many opportunities to advance evolutionary biology research, careful alignment between how cities are used and the research questions being asked is necessary to maximize the insights that can be gained. In this review, we develop a framework to help guide alignment between urban evolution research approaches and questions. Using this framework, we highlight what has been accomplished to date in the field of urban evolution and identify several up-and-coming research directions for further expansion. We conclude that urban environments can be used as evolutionary test beds to tackle both new and long-standing questions in evolutionary biology. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
虽然在城市中进行的研究不会揭示新的进化机制,但它可以提供前所未有的机会,以新的方式和新的途径来研究进化力量的相互作用,以解决经典问题。然而,尽管城市内部和城市之间的差异为推进进化生物学研究提供了许多机会,但城市的使用方式和研究问题之间的仔细协调对于最大限度地获得可以获得的见解是必要的。在这篇综述中,我们开发了一个框架来帮助指导城市演变研究方法和问题之间的一致性。利用这一框架,我们强调了迄今为止在城市演变领域所取得的成就,并确定了几个未来的研究方向,以进一步扩展。我们的结论是,城市环境可以作为进化的试验台来解决进化生物学中新的和长期存在的问题。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 22
The Ecology and Evolution of Model Microbial Mutualisms 模式微生物共生的生态学和进化
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-31 DOI: 10.1146/annurev-ecolsys-012121-091753
Jeremy M. Chacón, Sarah P. Hammarlund, Jonathan N. V. Martinson, Leno B. Smith, William R. Harcombe
Mutually beneficial interspecific interactions are abundant throughout the natural world, including between microbes. Mutualisms between microbes are critical for everything from human health to global nutrient cycling. Studying model microbial mutualisms in the laboratory enables highly controlled experiments for developing and testing evolutionary and ecological hypotheses. In this review, we begin by describing the tools available for studying model microbial mutualisms. We then outline recent insights that laboratory systems have shed on the evolutionary origins, evolutionary dynamics, and ecological features of microbial mutualism. We touch on gaps in our current understanding of microbial mutualisms, note connections to mutualism in nonmicrobial systems, and call attention to open questions ripe for future study. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
在整个自然界中,包括微生物之间,存在着大量互利的种间相互作用。微生物之间的相互作用对从人类健康到全球营养循环的一切都至关重要。在实验室中研究模型微生物相互作用,可以为发展和测试进化和生态假设提供高度控制的实验。在这篇综述中,我们首先描述了可用于研究模式微生物相互作用的工具。然后,我们概述了实验室系统在微生物共生的进化起源、进化动力学和生态特征方面的最新见解。我们触及了我们目前对微生物相互作用的理解的空白,注意到非微生物系统中相互作用的联系,并呼吁关注未来研究中成熟的开放性问题。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 2
Evolution of the Mode of Nutrition in Symbiotic and Saprotrophic Fungi in Forest Ecosystems 森林生态系统共生与腐养真菌营养模式的演化
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-31 DOI: 10.1146/annurev-ecolsys-012021-114902
Annie Lebreton, Qingchao Zeng, Shingo Miyauchi, A. Kohler, Yu-Cheng Dai, Francis M. Martin
In this review, we highlight the main insights that have been gathered from recent developments using large-scale genomics of fungal saprotrophs and symbiotrophs (including ectomycorrhizal and orchid and ericoid mycorrhizal fungi) inhabiting forest ecosystems. After assessing the goals and motivations underlying our approach, we explore our current understanding of the limits and future potential of using genomics to understand the ecological roles of these forest fungi. Comparative genomics unraveled the molecular machineries involved in lignocellulose decomposition in wood decayers, soil and litter saprotrophs, and mycorrhizal symbionts. They also showed that transitions from saprotrophy to mutualism entailed widespread losses of lignocellulose-degrading enzymes; diversification of novel, lineage-specific symbiosis-induced genes; and convergent evolution of genetic innovations that facilitate the accommodation of mutualistic symbionts within their plant hosts. We also identify the major questions that remain unanswered and propose new avenues of genome-based research to understand the role of soil fungi in sustainable forest ecosystems. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
在这篇综述中,我们重点介绍了近年来利用森林生态系统中真菌腐生菌和共生菌(包括外生菌根真菌、兰花菌根真菌和ericoid菌根真菌)的大规模基因组学研究进展所收集到的主要见解。在评估了我们方法的目标和动机之后,我们探索了我们目前对使用基因组学来理解这些森林真菌的生态作用的限制和未来潜力的理解。比较基因组学揭示了在木材腐尸、土壤和凋落物腐殖质以及菌根共生体中涉及木质纤维素分解的分子机制。他们还表明,从腐殖到共生的转变导致木质纤维素降解酶的广泛损失;新型、谱系特异性共生诱导基因的多样化;基因创新的趋同进化促进了共生共生体在其植物宿主内的适应。我们还确定了尚未解决的主要问题,并提出了基于基因组的研究的新途径,以了解土壤真菌在可持续森林生态系统中的作用。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 15
Animal Migration: An Overview of One of Nature's Great Spectacles 《动物迁徙:大自然奇观之一概览》
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-31 DOI: 10.1146/annurev-ecolsys-012021-031035
Adam M. Fudickar, A. Jahn, E. Ketterson
The twenty-first century has witnessed an explosion in research on animal migration, in large part due to a technological revolution in tracking and remote-sensing technologies, along with advances in genomics and integrative biology. We now have access to unprecedented amounts of data on when, where, and how animals migrate across various continents and oceans. Among the important advancements, recent studies have uncovered a surprising level of variation in migratory trajectories at the species and population levels with implications for both speciation and the conservation of migratory populations. At the organismal level, studies linking molecular and physiological mechanisms to traits that support migration have revealed a remarkable amount of seasonal flexibility in many migratory animals. Advancements in the theory for why animals migrate have resulted in promising new directions for empirical studies. We provide an overview of the current state of knowledge and promising future avenues of study. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
21世纪见证了动物迁徙研究的爆炸式增长,这在很大程度上是由于跟踪和遥感技术的技术革命,以及基因组学和综合生物学的进步。我们现在可以获得前所未有的大量数据,了解动物在何时、何地以及如何跨越各大洲和海洋迁徙。在重要的进展中,最近的研究揭示了物种和种群水平上迁徙轨迹的惊人变化,这对物种形成和迁徙种群的保护都具有重要意义。在有机体水平上,将分子和生理机制与支持迁徙的特征联系起来的研究揭示了许多迁徙动物具有显著的季节性灵活性。动物迁移理论的进步为实证研究带来了有希望的新方向。我们概述了目前的知识状况和有希望的未来研究途径。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 16
Dynamics of Ecological Communities Following Current Retreat of Glaciers 冰川退缩后生态群落的动态变化
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-31 DOI: 10.1146/annurev-ecolsys-010521-040017
G. Ficetola, S. Marta, Alessia Guerrieri, M. Gobbi, R. Ambrosini, D. Fontaneto, A. Zerboni, J. Poulenard, M. Caccianiga, W. Thuiller
Glaciers are retreating globally, and the resulting ice-free areas provide an experimental system for understanding species colonization patterns, community formation, and dynamics. The last several years have seen crucial advances in our understanding of biotic colonization after glacier retreats, resulting from the integration of methodological innovations and ecological theories. Recent empirical studies have demonstrated how multiple factors can speed up or slow down the velocity of colonization and have helped scientists develop theoretical models that describe spatiotemporal changes in community structure. There is a growing awareness of how different processes (e.g., time since glacier retreat, onset or interruption of surface processes, abiotic factors, dispersal, biotic interactions) interact to shape community formation and, ultimately, their functional structure through succession. Here, we examine how these studies address key theoretical questions about community dynamics and show how classical approaches are increasingly being combined with environmental DNA metabarcoding and functional trait analysis to document the formation of multitrophic communities, revolutionizing our understanding of the biotic processes that occur following glacier retreat. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
冰川正在全球范围内退缩,由此产生的无冰区为了解物种殖民模式、群落形成和动态提供了一个实验系统。在过去的几年里,由于方法创新和生态学理论的整合,我们对冰川退缩后生物殖民的理解取得了重大进展。最近的实证研究已经证明了多种因素如何加速或减缓殖民化的速度,并帮助科学家建立了描述群落结构时空变化的理论模型。人们越来越认识到,不同的过程(如冰川退缩以来的时间、地表过程的开始或中断、非生物因素、扩散、生物相互作用)如何相互作用,从而形成群落,并最终通过演代形成其功能结构。在这里,我们研究了这些研究如何解决关于群落动态的关键理论问题,并展示了经典方法如何越来越多地与环境DNA元条形码和功能特征分析相结合,以记录多营养群落的形成,彻底改变了我们对冰川退缩后发生的生物过程的理解。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 31
Causes, Consequences, and Conservation of Ungulate Migration 有蹄类动物迁徙的原因、后果和保护
IF 11.8 1区 生物学 Q1 ECOLOGY Pub Date : 2021-08-31 DOI: 10.1146/annurev-ecolsys-012021-011516
M. Kauffman, Ellen O. Aikens, S. Esmaeili, P. Kaczensky, A. Middleton, K. Monteith, T. Morrison, T. Mueller, H. Sawyer, J. Goheen
Our understanding of ungulate migration is advancing rapidly due to innovations in modern animal tracking. Herein, we review and synthesize nearly seven decades of work on migration and other long-distance movements of wild ungulates. Although it has long been appreciated that ungulates migrate to enhance access to forage, recent contributions demonstrate that their movements are fine tuned to dynamic landscapes where forage, snow, and drought change seasonally. Researchers are beginning to understand how ungulates navigate migrations, with the emerging view that animals blend gradient tracking with spatial memory, some of which is socially learned. Although migration often promotes abundant populations—with broad effects on ecosystems—many migrations around the world have been lost or are currently threatened by habitat fragmentation, climate change, and barriers to movement. Fortunately, new efforts that use empirical tracking data to map migrations in detail are facilitating effective conservation measures to maintain ungulate migration. Expected final online publication date for the Annual Review of Ecology, Evolution, and Systematics, Volume 52 is November 2021. Please see http://www.annualreviews.org/page/journal/pubdates for revised estimates.
由于现代动物追踪技术的创新,我们对有蹄类动物迁徙的理解正在迅速发展。在此,我们回顾和综合了近70年来关于野生有蹄类动物迁徙和其他长距离运动的研究。尽管长期以来人们一直认为有蹄类动物的迁徙是为了增加对饲料的获取,但最近的研究表明,它们的迁徙是根据饲料、雪和干旱季节性变化的动态景观进行微调的。研究人员开始了解有蹄类动物是如何进行迁徙的,有一种新兴的观点认为,动物将梯度跟踪与空间记忆结合在一起,其中一些是社会习得的。尽管迁徙通常会促进种群数量的增加,并对生态系统产生广泛的影响,但世界各地的许多迁徙已经消失,或者目前正受到栖息地破碎化、气候变化和迁徙障碍的威胁。幸运的是,利用经验跟踪数据详细绘制迁徙地图的新努力正在促进有效的保护措施,以维持有蹄类迁徙。预计《生态、进化和分类学年度评论》第52卷的最终在线出版日期为2021年11月。修订后的估计数请参阅http://www.annualreviews.org/page/journal/pubdates。
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引用次数: 27
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