Pub Date : 2025-02-13DOI: 10.1021/acs.analchem.4c05841
Qingyu Du, Haoyu Zhang, Yingna Bi, Huijie Wang, Xuemin Zhou, Pengfei Shi, Shuzhen Lv, Sai Bi
Near-infrared light (NIR)-driven photoelectrochemical (PEC) processes are mainly faced with the limitation of weak photocurrents. Here, N-deficient B-doped g-C3N4/CdS (NB-g-C3N4/CdS) is proposed to construct a NIR-driven PEC biosensor assisted by CRISPR-Cas12a system for the determination of microRNA-21 (miRNA-21). To promote the optical absorption as well as the separation of photogenerated electrons and holes of g-C3N4, NB-g-C3N4/CdS is constructed via engineering the electronic and band structure in terms of N defect, B doping, and heterojunction, achieving high PEC performance. To obtain the high luminescence efficiency for exciting NB-g-C3N4/CdS under NIR, the core-shell NaYF4:Yb3+, Tm3+@NaYF4 upconversion nanoparticles (UCNPs) with repaired defects are prepared. Furthermore, the rolling circle amplification (RCA)-assisted CRISPR-Cas12a system is integrated to fragment the DNA on UCNPs, achieving sensitive detection of miRNA-21. On the one hand, the uncleavaged signal probes on UCNPs combined with NB-g-C3N4/CdS through π-π stacking interaction, generating photocurrents under the irradiation of NIR. On the other hand, the cleavaged signal probes which cannot link with NB-g-C3N4/CdS exhibited the fluorescence (FL) signals. The proposed PEC-FL dual-mode biosensor provides a mutual authentication of testing results and demonstrates ultrasensitivity (the detection limit of 1.1 fM for PEC mode and 7.0 fM for FL mode) and excellent specificity, which is promising in the clinical analysis of miRNA.
{"title":"N-Deficient B-Doped <i>g</i>-C<sub>3</sub>N<sub>4</sub>/CdS Heterojunction-Based PEC-FL Biosensor Assisted by CRISPR-Cas12a System for Ultrasensitive Determination of microRNA.","authors":"Qingyu Du, Haoyu Zhang, Yingna Bi, Huijie Wang, Xuemin Zhou, Pengfei Shi, Shuzhen Lv, Sai Bi","doi":"10.1021/acs.analchem.4c05841","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c05841","url":null,"abstract":"<p><p>Near-infrared light (NIR)-driven photoelectrochemical (PEC) processes are mainly faced with the limitation of weak photocurrents. Here, N-deficient B-doped <i>g</i>-C<sub>3</sub>N<sub>4</sub>/CdS (NB-<i>g</i>-C<sub>3</sub>N<sub>4</sub>/CdS) is proposed to construct a NIR-driven PEC biosensor assisted by CRISPR-Cas12a system for the determination of microRNA-21 (miRNA-21). To promote the optical absorption as well as the separation of photogenerated electrons and holes of <i>g</i>-C<sub>3</sub>N<sub>4</sub>, NB-<i>g</i>-C<sub>3</sub>N<sub>4</sub>/CdS is constructed via engineering the electronic and band structure in terms of N defect, B doping, and heterojunction, achieving high PEC performance. To obtain the high luminescence efficiency for exciting NB-<i>g</i>-C<sub>3</sub>N<sub>4</sub>/CdS under NIR, the core-shell NaYF<sub>4</sub>:Yb<sup>3+</sup>, Tm<sup>3+</sup>@NaYF<sub>4</sub> upconversion nanoparticles (UCNPs) with repaired defects are prepared. Furthermore, the rolling circle amplification (RCA)-assisted CRISPR-Cas12a system is integrated to fragment the DNA on UCNPs, achieving sensitive detection of miRNA-21. On the one hand, the uncleavaged signal probes on UCNPs combined with NB-<i>g</i>-C<sub>3</sub>N<sub>4</sub>/CdS through π-π stacking interaction, generating photocurrents under the irradiation of NIR. On the other hand, the cleavaged signal probes which cannot link with NB-<i>g</i>-C<sub>3</sub>N<sub>4</sub>/CdS exhibited the fluorescence (FL) signals. The proposed PEC-FL dual-mode biosensor provides a mutual authentication of testing results and demonstrates ultrasensitivity (the detection limit of 1.1 fM for PEC mode and 7.0 fM for FL mode) and excellent specificity, which is promising in the clinical analysis of miRNA.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2025-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143412342","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
As a highly aggressive malignancy, the issue of curing melanoma at an advanced stage could suffer from severe metastasis and a lower 5-year survival rate. Therefore, the early diagnosis of melanoma with high accuracy is vital and contributes to a significantly improved 5-year survival rate. This work reports a dual-locked receptor, m-BA-Hcy, which releases the near-infrared (NIR) fluorophore Hcy-OH upon the dual activation of reactive oxygen species (ROS) and tyrosinase (TYR). The substitution of boric acid on the phenyl ring was studied, which influences the feasibility of the performance of the envisaged cascade reaction. The sensing behavior was discussed in terms of optical spectroscopy and reaction mechanism, and imaging was fully performed at the cellular and organism levels. Receptor m-BA-Hcy was hence clarified to possess supreme sensitivity and accuracy for melanoma detection.
{"title":"Reactive Oxygen Species (ROS)-Tyrosinase Cascade-Activated Near-Infrared Fluorescent Probe for the Precise Imaging of Melanoma.","authors":"Ruidian Lv, Sitong Hang, Yuran Zhao, Weijie Gao, Peng Zhang, Ke Zheng, Qian Zhang, Caifeng Ding","doi":"10.1021/acs.analchem.5c00018","DOIUrl":"https://doi.org/10.1021/acs.analchem.5c00018","url":null,"abstract":"<p><p>As a highly aggressive malignancy, the issue of curing melanoma at an advanced stage could suffer from severe metastasis and a lower 5-year survival rate. Therefore, the early diagnosis of melanoma with high accuracy is vital and contributes to a significantly improved 5-year survival rate. This work reports a dual-locked receptor, m-BA-Hcy, which releases the near-infrared (NIR) fluorophore Hcy-OH upon the dual activation of reactive oxygen species (ROS) and tyrosinase (TYR). The substitution of boric acid on the phenyl ring was studied, which influences the feasibility of the performance of the envisaged cascade reaction. The sensing behavior was discussed in terms of optical spectroscopy and reaction mechanism, and imaging was fully performed at the cellular and organism levels. Receptor m-BA-Hcy was hence clarified to possess supreme sensitivity and accuracy for melanoma detection.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2025-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143412266","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The pore microstructure of mesoporous materials has a vital influence on molecular movement and assembly as well as crystallization. Nonetheless, previous studies have predominantly concentrated on the impact of pore size and pore shape on molecular assembly and nucleation outcomes; investigations delving into the effects of more complex pore structures on molecular assembly and nucleation behaviors were absent. In this study, evolution of the molecular self-assembly process of flufenamic acid (FFA) confined in mesoporous materials with different microstructures was monitored by in situ 19F solid-state NMR spectroscopy. It was demonstrated that tortuosity, as a microstructural parameter of porous materials, has the ability to determine the molecular assembly process and nucleation behaviors of FFA. The results indicated that molecules in pores with high tortuosity tend to aggregate to an amorphous plug, while those in less tortuous nanopores are inclined to adsorb on the pore surface forming molecular layers. Besides that, this work provides the first direct proof that a mixture of two molecular layer structures exists on the FFA-silica surface through 19F solid-state NMR spectroscopy. This study explores the relationship between the microstructure of porous materials and molecular assembly, which can inform drug delivery, electronic deposition, and biomineralization.
{"title":"Exploring the Effect of Nanopore Microstructures on Crystallization and the Evolution of Molecular Assembly Structure by <sup>19</sup>F Solid-State Nuclear Magnetic Resonance Spectroscopy.","authors":"Keke Zhang, Mengyang Cai, Mengwei Wang, Pengpeng Yang, Kongying Zhu, Zhenfu Wang, Junbo Gong, Hanjie Ying","doi":"10.1021/acs.analchem.4c06353","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c06353","url":null,"abstract":"<p><p>The pore microstructure of mesoporous materials has a vital influence on molecular movement and assembly as well as crystallization. Nonetheless, previous studies have predominantly concentrated on the impact of pore size and pore shape on molecular assembly and nucleation outcomes; investigations delving into the effects of more complex pore structures on molecular assembly and nucleation behaviors were absent. In this study, evolution of the molecular self-assembly process of flufenamic acid (FFA) confined in mesoporous materials with different microstructures was monitored by in situ <sup>19</sup>F solid-state NMR spectroscopy. It was demonstrated that tortuosity, as a microstructural parameter of porous materials, has the ability to determine the molecular assembly process and nucleation behaviors of FFA. The results indicated that molecules in pores with high tortuosity tend to aggregate to an amorphous plug, while those in less tortuous nanopores are inclined to adsorb on the pore surface forming molecular layers. Besides that, this work provides the first direct proof that a mixture of two molecular layer structures exists on the FFA-silica surface through <sup>19</sup>F solid-state NMR spectroscopy. This study explores the relationship between the microstructure of porous materials and molecular assembly, which can inform drug delivery, electronic deposition, and biomineralization.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2025-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143412340","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The body mitigates the toxic effects of metals through diverse detoxification mechanisms that are activated depending on the chemical species and the burden of metals in each tissue. In this regard, analytical methods that can obtain information on the chemical form and the abundance of metals are required to elucidate the full range of detoxification mechanisms. Laser ablation (LA) is used to trim a specific microregion from tissue sections and visualize elements in it. Speciation analysis by liquid chromatography (LC) hyphenated to inductively coupled plasma mass spectrometry (ICP-MS) has been optimized for microvolume samples from small tissue sections. In this study, we developed a combined method of LA and LC-ICP-MS (LA/LC-ICP-MS) and applied it to rat brain and kidney tissues. Differences in copper (Cu) and zinc (Zn) abundance in each brain tissue region are reflected in the peak intensities of metallothioneins (MTs) detected by LC-ICP-MS analysis. In addition to revealing differences in the distribution and the concentration of mercury (Hg) in the kidneys of rats exposed to inorganic mercury (iHg) or methylmercury (MeHg) by LA-ICP-MS, we also revealed differences in the type of proteins that bind these Hg species by LC-ICP-MS. We found that in the iHg-exposed group, MT induction occurred mainly in the renal cortex and the outer medulla with elevated Cu and Zn, whereas in the MeHg-exposed group, Hg was mainly bound to hemoglobin (Hb). LA/LC-ICP-MS can simultaneously provide qualitative and quantitative information on metals in a small tissue region.
{"title":"Laser Ablation Coupled with LC-ICP-MS for Local Speciation of Trace Elements in Tissues","authors":"Makiko Iwase, Yu-Ki Tanaka, Yasunori Fukumoto, Noriyuki Suzuki, Yasumitsu Ogra","doi":"10.1021/acs.analchem.5c00153","DOIUrl":"https://doi.org/10.1021/acs.analchem.5c00153","url":null,"abstract":"The body mitigates the toxic effects of metals through diverse detoxification mechanisms that are activated depending on the chemical species and the burden of metals in each tissue. In this regard, analytical methods that can obtain information on the chemical form and the abundance of metals are required to elucidate the full range of detoxification mechanisms. Laser ablation (LA) is used to trim a specific microregion from tissue sections and visualize elements in it. Speciation analysis by liquid chromatography (LC) hyphenated to inductively coupled plasma mass spectrometry (ICP-MS) has been optimized for microvolume samples from small tissue sections. In this study, we developed a combined method of LA and LC-ICP-MS (LA/LC-ICP-MS) and applied it to rat brain and kidney tissues. Differences in copper (Cu) and zinc (Zn) abundance in each brain tissue region are reflected in the peak intensities of metallothioneins (MTs) detected by LC-ICP-MS analysis. In addition to revealing differences in the distribution and the concentration of mercury (Hg) in the kidneys of rats exposed to inorganic mercury (iHg) or methylmercury (MeHg) by LA-ICP-MS, we also revealed differences in the type of proteins that bind these Hg species by LC-ICP-MS. We found that in the iHg-exposed group, MT induction occurred mainly in the renal cortex and the outer medulla with elevated Cu and Zn, whereas in the MeHg-exposed group, Hg was mainly bound to hemoglobin (Hb). LA/LC-ICP-MS can simultaneously provide qualitative and quantitative information on metals in a small tissue region.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"6 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2025-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143401954","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-13DOI: 10.1021/acs.analchem.4c06501
Liang-Che Kung, Li-Kang Chu
A fluorescence-based temperature jump (T-jump) module was constructed to illustrate the large-domain motion of a given protein upon thermal stimulus on the millisecond time scale. The aqueous sample was readily heated by 5.0 °C in ca. 2 ms with a lasting high temperature plateau (>1 s) upon irradiation with the “optical Riemann sum” of the discrete infrared pulses of different energy sequences from a 1467 nm diode laser operated at 1k Hz. The temperature evolution was revealed by the time-evolved fluorescence intensity change of the dissolved tryptophan. Bovine serum albumin (BSA) and human serum albumin (HSA) were chosen as model proteins, and their fluorescence intensity evolutions were recorded at 36.6–39.9 °C upon T-jump from 35.0 °C, within the range of physiological temperatures. The observed protein dynamics of BSA was characterized with an apparent activation energy of 276 ± 23 kJ mol–1, whereas HSA did not manifest the dynamic component. In this measurement, only a tiny amount of sample, ca. 1 μL, was required due to the conjugation of the microspot objective, and the initial temperature was readily controlled by a homemade thermostatic pad. This millisecond-resolution technique is advantageous for illustrating the large-domain dynamics of the targeted protein, bridging the characterizations of the localized protein dynamics on nanosecond to microsecond time scales using the fast techniques and the steady-state protein conformational features by conventional methods, such as Fourier-transform infrared and circular dichroism spectroscopies.
{"title":"A Fluorescence-Based Temperature-Jump Apparatus for Illustrating Protein Dynamics on the Millisecond Time Scale","authors":"Liang-Che Kung, Li-Kang Chu","doi":"10.1021/acs.analchem.4c06501","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c06501","url":null,"abstract":"A fluorescence-based temperature jump (T-jump) module was constructed to illustrate the large-domain motion of a given protein upon thermal stimulus on the millisecond time scale. The aqueous sample was readily heated by 5.0 °C in ca. 2 ms with a lasting high temperature plateau (>1 s) upon irradiation with the “optical Riemann sum” of the discrete infrared pulses of different energy sequences from a 1467 nm diode laser operated at 1k Hz. The temperature evolution was revealed by the time-evolved fluorescence intensity change of the dissolved tryptophan. Bovine serum albumin (BSA) and human serum albumin (HSA) were chosen as model proteins, and their fluorescence intensity evolutions were recorded at 36.6–39.9 °C upon T-jump from 35.0 °C, within the range of physiological temperatures. The observed protein dynamics of BSA was characterized with an apparent activation energy of 276 ± 23 kJ mol<sup>–1</sup>, whereas HSA did not manifest the dynamic component. In this measurement, only a tiny amount of sample, ca. 1 μL, was required due to the conjugation of the microspot objective, and the initial temperature was readily controlled by a homemade thermostatic pad. This millisecond-resolution technique is advantageous for illustrating the large-domain dynamics of the targeted protein, bridging the characterizations of the localized protein dynamics on nanosecond to microsecond time scales using the fast techniques and the steady-state protein conformational features by conventional methods, such as Fourier-transform infrared and circular dichroism spectroscopies.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"50 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2025-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143401952","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The acetone present in exhaled breath is a promising indicator for diagnosing human health. The fluorescent hydrogel sensor-based portable sensing platform is a highly effective tool for the on-site detection of acetone. However, existing hydrogel sensors are often limited by their irreversibility and autofluorescence. This study constructed an upconversion nanoprobe with reversibility for dual-mode detection of acetone by simply combining upconversion nanoparticles (UCNPs), hydroxylamine sulfate, and thymol blue (TB). The nanoprobe was further embedded into a hydrogel network to construct the background-free hydrogel nanosensor for the portable detection of acetone. The hydrogel nanosensor utilized long-wavelength-excited UCNPs to avoid self-luminescence interference. Hydroxylamine sulfate, as a specific recognition unit, reacted with acetone to induce the protonation of TB, resulting in an increase in absorbance at 548 nm and a decrease in luminescence at 540 nm, enabling visual colorimetric and precise luminescent detection of acetone. Moreover, the hydrogel nanosensor could be restored to its initial state through the deprotonation of TB, thereby achieving reversible detection. Additionally, 3D printing technology was utilized to construct a portable sensing platform for real-time acetone monitoring. The proposed upconversion hydrogel nanosensor in this study paves a new way for developing hydrogel sensors with high sensitivity and reversibility.
{"title":"The Reversible and Background-Free Hydrogel-Sensing Platform for Dual-Mode Detection of Acetone in Exhaled Breath.","authors":"Wenshuai Guo, Kangran Li, Hao Yu, Caidie Chang, Jiawei Zhu, Kai Dai, Changlong Jiang","doi":"10.1021/acs.analchem.4c06189","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c06189","url":null,"abstract":"<p><p>The acetone present in exhaled breath is a promising indicator for diagnosing human health. The fluorescent hydrogel sensor-based portable sensing platform is a highly effective tool for the on-site detection of acetone. However, existing hydrogel sensors are often limited by their irreversibility and autofluorescence. This study constructed an upconversion nanoprobe with reversibility for dual-mode detection of acetone by simply combining upconversion nanoparticles (UCNPs), hydroxylamine sulfate, and thymol blue (TB). The nanoprobe was further embedded into a hydrogel network to construct the background-free hydrogel nanosensor for the portable detection of acetone. The hydrogel nanosensor utilized long-wavelength-excited UCNPs to avoid self-luminescence interference. Hydroxylamine sulfate, as a specific recognition unit, reacted with acetone to induce the protonation of TB, resulting in an increase in absorbance at 548 nm and a decrease in luminescence at 540 nm, enabling visual colorimetric and precise luminescent detection of acetone. Moreover, the hydrogel nanosensor could be restored to its initial state through the deprotonation of TB, thereby achieving reversible detection. Additionally, 3D printing technology was utilized to construct a portable sensing platform for real-time acetone monitoring. The proposed upconversion hydrogel nanosensor in this study paves a new way for developing hydrogel sensors with high sensitivity and reversibility.</p>","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":" ","pages":""},"PeriodicalIF":6.7,"publicationDate":"2025-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143412267","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-13DOI: 10.1021/acs.analchem.4c05583
Shane D. Gilligan-Steinberg, Enos C. Kline, Qin Wang, Rhett J. Britton, Wookyeom Kim, Jason W. Rupp, Hanwen Gu, Ingrid A. Beck, Ian T. Hull, Nuttada Panpradist, Joanne D. Stekler, Lisa M. Frenkel, Paul K. Drain, James J. Lai, Barry R. Lutz
Nucleic acid amplification tests (NAATs) can achieve high accuracy for diagnosing infectious diseases by targeting conserved genetic sequences specific to the target organism. Isothermal NAATs, such as reverse-transcription loop mediated isothermal amplification (RT-LAMP), simplify instrumentation requirements, facilitating point-of-care testing. However, sequence variation due to genetic variability can cause false negative results. Single-pot multiplex testing can improve sequence coverage, but RT-LAMP is complicated by requiring many primers for even a single assay, which can lead to nonspecific amplification. We implemented a process that leveraged manual primer design to develop a highly multiplexed RT-LAMP assay (Chain LAMP) targeting 7 adjacent genomic target regions of HIV, one of the most diverse clinically relevant pathogens. This process departed from standards for RT-LAMP design, including the omission of bumper primers whose activity was replaced by cooperative neighboring assays. The Chain LAMP is, to our knowledge, the highest order single-pot multiplexed RT-LAMP assay published. The assay has an analytical limit of detection of 25 copies of RNA/reaction without detectable nonspecific amplification, translating to 1000 copies of HIV/mL of plasma from a fingerstick sample, aligning with WHO standards for HIV viral load monitoring. When evaluated using 24 clinical RNA samples representative of global HIV diversity, Chain LAMP demonstrated robust coverage of sequence diversity, amplifying all samples with minimal sensitivity variation. We performed mechanistic analysis with Nanopore sequencing, identifying liftoff of multiple assay regions for each sample, indicating many initiation loci. The high level of multiplexing in the Chain LAMP effectively increases the coverage of HIV sequence diversity.
{"title":"Development of a Highly Multiplexed RT-LAMP Assay for Coverage of Genetic Sequence Diversity","authors":"Shane D. Gilligan-Steinberg, Enos C. Kline, Qin Wang, Rhett J. Britton, Wookyeom Kim, Jason W. Rupp, Hanwen Gu, Ingrid A. Beck, Ian T. Hull, Nuttada Panpradist, Joanne D. Stekler, Lisa M. Frenkel, Paul K. Drain, James J. Lai, Barry R. Lutz","doi":"10.1021/acs.analchem.4c05583","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c05583","url":null,"abstract":"Nucleic acid amplification tests (NAATs) can achieve high accuracy for diagnosing infectious diseases by targeting conserved genetic sequences specific to the target organism. Isothermal NAATs, such as reverse-transcription loop mediated isothermal amplification (RT-LAMP), simplify instrumentation requirements, facilitating point-of-care testing. However, sequence variation due to genetic variability can cause false negative results. Single-pot multiplex testing can improve sequence coverage, but RT-LAMP is complicated by requiring many primers for even a single assay, which can lead to nonspecific amplification. We implemented a process that leveraged manual primer design to develop a highly multiplexed RT-LAMP assay (Chain LAMP) targeting 7 adjacent genomic target regions of HIV, one of the most diverse clinically relevant pathogens. This process departed from standards for RT-LAMP design, including the omission of bumper primers whose activity was replaced by cooperative neighboring assays. The Chain LAMP is, to our knowledge, the highest order single-pot multiplexed RT-LAMP assay published. The assay has an analytical limit of detection of 25 copies of RNA/reaction without detectable nonspecific amplification, translating to 1000 copies of HIV/mL of plasma from a fingerstick sample, aligning with WHO standards for HIV viral load monitoring. When evaluated using 24 clinical RNA samples representative of global HIV diversity, Chain LAMP demonstrated robust coverage of sequence diversity, amplifying all samples with minimal sensitivity variation. We performed mechanistic analysis with Nanopore sequencing, identifying liftoff of multiple assay regions for each sample, indicating many initiation loci. The high level of multiplexing in the Chain LAMP effectively increases the coverage of HIV sequence diversity.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"16 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2025-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143401951","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-02-12DOI: 10.1021/acs.analchem.4c05082
Xingzhi Che, Nikita Ivanov, Svetlana M. Krylova, Sergey N. Krylov
Electrophoretically facilitated layer-by-layer assembly of gold nanoparticles (GNPs) in lateral flow immunoassays (LFIAs) significantly enhances the signal-to-background ratio and, consequently, the diagnostic sensitivity of these tests. However, conventional two-reservoir electrophoresis on paper is limited by counterflow induced by capillary action, which disrupts the electrophoretic migration of GNPs toward the anode. This counterflow necessitates manual intervention to facilitate the movement of GNP-labeled immunocomplexes from the membrane to the absorption pad, complicating the assay workflow. To address this challenge, we propose a nonconventional single-reservoir electrophoresis system on paper, which inherently eliminates counterflow. In this configuration, the loading side of the paper strip and the cathode reside within the buffer reservoir, while the anode is directly affixed to the opposite end of the paper strip. We demonstrate the efficacy of this single-reservoir system in driving layer-by-layer assembly, while presenting favorable spatial temperature profiles as a side benefit. By eliminating the need for manual steps, this design streamlines the electrophoresis process and enhances the usability of electrophoretically facilitated LFIA assays.
{"title":"Single-Reservoir Electrophoresis to Facilitate Layer-by-Layer Assembly of Gold Nanoparticles in Lateral Flow Immunoassay","authors":"Xingzhi Che, Nikita Ivanov, Svetlana M. Krylova, Sergey N. Krylov","doi":"10.1021/acs.analchem.4c05082","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c05082","url":null,"abstract":"Electrophoretically facilitated layer-by-layer assembly of gold nanoparticles (GNPs) in lateral flow immunoassays (LFIAs) significantly enhances the signal-to-background ratio and, consequently, the diagnostic sensitivity of these tests. However, conventional two-reservoir electrophoresis on paper is limited by counterflow induced by capillary action, which disrupts the electrophoretic migration of GNPs toward the anode. This counterflow necessitates manual intervention to facilitate the movement of GNP-labeled immunocomplexes from the membrane to the absorption pad, complicating the assay workflow. To address this challenge, we propose a nonconventional single-reservoir electrophoresis system on paper, which inherently eliminates counterflow. In this configuration, the loading side of the paper strip and the cathode reside within the buffer reservoir, while the anode is directly affixed to the opposite end of the paper strip. We demonstrate the efficacy of this single-reservoir system in driving layer-by-layer assembly, while presenting favorable spatial temperature profiles as a side benefit. By eliminating the need for manual steps, this design streamlines the electrophoresis process and enhances the usability of electrophoretically facilitated LFIA assays.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"1 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143393670","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Based on near-infrared off-axis integrated cavity output spectroscopy (OA-ICOS), a portable carbon dioxide (CO2) sensor system capable of atmosphere monitoring is proposed by targeting the CO2 absorption lines at 2.004 μm. To address the comprehensive issues of complex light-adjustment structures, poor sealing, and slow gas replacement, an effective optimization scheme is introduced, combining fluid dynamics to produce a stable optical resonant cavity with an optical path length of 891 m and a physical length of 30 cm. The sensor system boasts a wide dynamic range of 0.011–800 parts per million (ppm), with a limit of detection (LoD) of 11 parts per billion (ppb) at an averaging time of 0.5 s. To address the issues of long monitoring time and cumbersome data supervision, a cloud monitoring system was developed based on a master control module, a cloud server, and a portable monitoring terminal. Field mobile monitoring of urban CO2 was conducted over a large area in Changchun city, along with a 7-day fixed-point detection on the campus of Jilin University, verifying the reliability and application potential of the mobile CO2 monitoring system in field applications.
{"title":"Near-Infrared Mobile Cloud OA-ICOS Sensor System for Atmospheric Carbon Dioxide Monitoring","authors":"Lei Zhang, Ying Hua, Yishen Zhou, Kaiyuan Zheng, Fang Song, Zhiyong Chang, Chuantao Zheng","doi":"10.1021/acs.analchem.4c05644","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c05644","url":null,"abstract":"Based on near-infrared off-axis integrated cavity output spectroscopy (OA-ICOS), a portable carbon dioxide (CO<sub>2</sub>) sensor system capable of atmosphere monitoring is proposed by targeting the CO<sub>2</sub> absorption lines at 2.004 μm. To address the comprehensive issues of complex light-adjustment structures, poor sealing, and slow gas replacement, an effective optimization scheme is introduced, combining fluid dynamics to produce a stable optical resonant cavity with an optical path length of 891 m and a physical length of 30 cm. The sensor system boasts a wide dynamic range of 0.011–800 parts per million (ppm), with a limit of detection (LoD) of 11 parts per billion (ppb) at an averaging time of 0.5 s. To address the issues of long monitoring time and cumbersome data supervision, a cloud monitoring system was developed based on a master control module, a cloud server, and a portable monitoring terminal. Field mobile monitoring of urban CO<sub>2</sub> was conducted over a large area in Changchun city, along with a 7-day fixed-point detection on the campus of Jilin University, verifying the reliability and application potential of the mobile CO<sub>2</sub> monitoring system in field applications.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"19 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143401970","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Detecting complete viral particles in vaccines is essential for both monitoring vaccine production and ensuring vaccine quality. Currently, sucrose density gradient centrifugation is the standard method for measuring the antigen content in conventional inactivated vaccines, but it requires specialized equipment and skilled personnel. Recently, BODIPY (BDP) dyes have gained attention in biomolecular studies due to their modifiable parent structure, although their use in macromolecular proteins remains limited. This study successfully synthesized a fluorescent antibody, BDP-VHH (variable domain of a heavy chain of a heavy chain-only antibody), through the nucleophilic substitution of BDP-2Cl with VHH, which recognizes the 146S antigen of the foot-and-mouth disease virus (FMDV). We investigated its use in quantifying FMDV serotype O antigen and cell imaging. The results showed that the BDP-VHH-based method can quantify the antigen within 1 h with good repeatability and sensitivity. Compared with FITC-conjugated antibodies, BDP-VHH demonstrated improved light stability. This study provides a foundation for the use of BDP fluorescent dyes in the macromolecular biological research.
{"title":"New BODIPY-Labeled Antibody for Detection of Foot-and-Mouth Disease Virus","authors":"Tian Wei, Yun Zhang, Cong Liu, Yipei Wang, Suyu Mu, Manyuan Bai, Jinen Wu, Hu Dong, Jingjing Zhou, Shiqi Sun, Wenwu Qin, Huichen Guo","doi":"10.1021/acs.analchem.4c05954","DOIUrl":"https://doi.org/10.1021/acs.analchem.4c05954","url":null,"abstract":"Detecting complete viral particles in vaccines is essential for both monitoring vaccine production and ensuring vaccine quality. Currently, sucrose density gradient centrifugation is the standard method for measuring the antigen content in conventional inactivated vaccines, but it requires specialized equipment and skilled personnel. Recently, BODIPY (BDP) dyes have gained attention in biomolecular studies due to their modifiable parent structure, although their use in macromolecular proteins remains limited. This study successfully synthesized a fluorescent antibody, BDP-VHH (variable domain of a heavy chain of a heavy chain-only antibody), through the nucleophilic substitution of BDP-2Cl with VHH, which recognizes the 146S antigen of the foot-and-mouth disease virus (FMDV). We investigated its use in quantifying FMDV serotype O antigen and cell imaging. The results showed that the BDP-VHH-based method can quantify the antigen within 1 h with good repeatability and sensitivity. Compared with FITC-conjugated antibodies, BDP-VHH demonstrated improved light stability. This study provides a foundation for the use of BDP fluorescent dyes in the macromolecular biological research.","PeriodicalId":27,"journal":{"name":"Analytical Chemistry","volume":"29 1","pages":""},"PeriodicalIF":7.4,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143393672","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}