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The Munich Procedure – Standardising linear regression documentation in p-XRF research 慕尼黑程序--p-XRF 研究中线性回归文件的标准化
IF 2.1 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-05-14 DOI: 10.1016/j.simpa.2024.100660
Michaela Schauer , Frank Siegmund , Markus Helfert , Brandon Lee Drake

The Munich Procedure, a protocol presented as R code and initially developed on the basis of archaeometric portable X-ray fluorescence (p-XRF) data, offers adaptability and standardisation to evaluate coefficient corrections. These corrections are derived from linear regressions calculated by comparing p-XRF values with laboratory chemical analyses of the same sample set. The versatility of this procedure allows collaboration and ensures consistent data structure. Not tied to specific instrumentation, this approach helps to universally improve the accuracy of p-XRF data, benefiting specialists in a variety of industries. By providing a common baseline for performance evaluation, it enables discussion across different applications.

慕尼黑程序是一个以 R 代码形式呈现的协议,最初是在考古便携式 X 射线荧光(p-XRF)数据的基础上开发的,它为评估系数修正提供了适应性和标准化。这些修正值是通过比较 p-XRF 值和相同样本集的实验室化学分析值计算出的线性回归结果得出的。该程序的多功能性允许进行协作,并确保数据结构的一致性。这种方法与特定仪器无关,有助于普遍提高 p-XRF 数据的准确性,使各行各业的专家受益匪浅。通过为性能评估提供一个共同的基线,可以对不同的应用进行讨论。
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引用次数: 0
HELVES: A Python-based simulator to model circulation of electric vehicles on a highway HELVES:基于 Python 的模拟器,用于模拟电动汽车在高速公路上的通行情况
IF 2.1 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-05-11 DOI: 10.1016/j.simpa.2024.100658
Ekaterina Dudkina, Claudio Scarpelli

Due to the stable increase in electric mobility, it is important to assess the growing burden on the power system in general and on the existing charging stations, to plan future development and extension of the electric infrastructure. The simulator proposed in this paper is based on Python software and allows modeling of the flow of electric vehicles circulating on a highway. It allows to evaluate the impact of electric vehicles for different penetration level, allocation strategies, charging rates and capacities of the charging stations. The simulator is applied to a case study to illustrate the functionalities of the code and a range of Key Performance Indicators is proposed to illustrate charging times. Finally, it is demonstrated that the simulator outcomes can highlight crucial aspects from both the drivers’ and the charging station operators’ perspectives.

随着电动汽车数量的稳定增长,有必要对电力系统和现有充电站日益增加的负担进行评估,以规划未来电力基础设施的发展和扩展。本文提出的模拟器基于 Python 软件,可以对高速公路上的电动汽车流进行建模。它可以评估电动汽车在不同渗透率、分配策略、充电率和充电站容量下的影响。该模拟器应用于一个案例研究,以说明代码的功能,并提出了一系列关键性能指标,以说明充电时间。最后,从驾驶员和充电站运营商的角度证明了模拟器的结果可以突出关键方面。
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引用次数: 0
Multiscale model with relaxed boundary conditions for metamaterial calculations 用于超材料计算的具有宽松边界条件的多尺度模型
IF 2.1 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-05-10 DOI: 10.1016/j.simpa.2024.100659
Antonio Tabanera Manzanares , Luis Saucedo-Mora , Miguel Ángel Sanz Gómez , Francisco Montans Leal

The software presented is designed to perform metamaterial calculations via a multiscale model, where an original problem (a metamaterial structure) with a large number of degrees of freedom is divided into the sum of smaller problems with much less degrees of freedom each, therefore reducing noticeably the computational cost in terms of RAM consumption. RAM usage has been reduced by more than 90% in different probes of metamaterial, and the larger the dimension of the problem, the greater the enhancement. Those results are published as a promising probe of concept of the theory.

所介绍的软件旨在通过多尺度模型执行超材料计算,将具有大量自由度的原始问题(超材料结构)划分为每个自由度小得多的较小问题的总和,从而显著降低 RAM 消耗方面的计算成本。在不同的超材料探测中,RAM 的使用量减少了 90% 以上,而且问题的维度越大,效果越明显。这些结果已作为该理论概念的一个很有前途的探测结果发表。
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引用次数: 0
Potenial_ElectricField_PS-BPLC_Microlens: The calculations of the electric potential and fields in the polymer-stabilized blue-phase liquid crystals between two parallel electrodes Potenial_ElectricField_PS-BPLC_Microlens:两个平行电极之间的聚合物稳定蓝相液晶中的电势和电场计算
IF 2.1 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-05-03 DOI: 10.1016/j.simpa.2024.100647
Ting-Han Pei

We present software for calculating the analytical distributions of potential and field in microlens made of polymer-stabilized blue-phase liquid crystals. The microlens is located between two electrodes with a circular opening on the upper electrode. The program is encoded using the derived analytical solution formulas of the potential and electric field. It is faster, more energy-saving, and has less memory configuration than the finite-difference equation method solving by using the Poisson Equation with boundary conditions. The software outputs relevant Data files and a MATLAB code that can draw the distributions of potential, electric field, and directors, allowing the calculations visualized.

我们介绍了计算聚合物稳定蓝相液晶微透镜中电势和电场分析分布的软件。微透镜位于两个电极之间,上部电极有一个圆形开口。该程序使用推导出的电势和电场分析求解公式进行编码。与使用带边界条件的泊松方程求解的有限差分方程法相比,它更快、更省电、内存配置更少。该软件输出相关数据文件和 MATLAB 代码,可绘制电势、电场和导演的分布图,使计算结果可视化。
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引用次数: 0
Rice-ResNet: Rice classification and quality detection by transferred ResNet deep model Rice-ResNet:通过转移 ResNet 深度模型进行水稻分类和质量检测
IF 2.1 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-05-01 DOI: 10.1016/j.simpa.2024.100654
Mohammadreza Razavi , Samira Mavaddati , Ziad Kobti , Hamidreza Koohi

Efficient classification and quality assessment of rice varieties are essential for market pricing, food safety, and consumer satisfaction in the global rice sector. Leveraging pre-trained ResNet architectures, Rice-ResNet significantly enhances feature extraction, ensuring accurate classification and quality detection of rice cultivars. This system, accessible in Python repositories, promises improved crop management and yield. Despite requiring real-world implementation, Rice-ResNet marks a significant advancement in rice classification, fostering enriched digital experiences.

高效的水稻品种分类和质量评估对于全球水稻行业的市场定价、食品安全和消费者满意度至关重要。利用预先训练的 ResNet 架构,Rice-ResNet 可显著增强特征提取,确保对水稻品种进行准确分类和质量检测。该系统可在 Python 存储库中访问,有望改善作物管理并提高产量。尽管需要在现实世界中实施,但 Rice-ResNet 标志着水稻分类领域的重大进步,促进了丰富的数字体验。
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引用次数: 0
SMI2PDB: A self-contained Python tool to generate atomistic systems of organic molecules using their SMILES notations SMI2PDB:使用 SMILES 符号生成有机分子原子系统的独立 Python 工具
IF 2.1 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-05-01 DOI: 10.1016/j.simpa.2024.100655
Eli I. Assaf , Xueyan Liu , Peng Lin , Sandra Erkens

The advent of computational techniques, particularly atomistic simulations, has lessened the dependency on physical experiments in various scientific fields. Yet, the preparation complexity for simulations using platforms like LAMMPS and GROMACS persists. We introduce SMI2PDB, a Python tool that automates molecular systems assembly from SMILES to PDB format, easing molecular dynamics simulation setups. SMI2PDB manages molecule configuration and quantification effortlessly, establishes stable conformers, applies random rotations, and positions them in a simulation box with a Sobol sequence to reduce overlaps. This script facilitates the rapid preparation of complex organic mixtures for use in simulations, enhancing the exploration of novel materials.

计算技术,尤其是原子模拟技术的出现,减轻了各科学领域对物理实验的依赖。然而,使用 LAMMPS 和 GROMACS 等平台进行模拟的准备工作仍然十分复杂。我们介绍的 SMI2PDB 是一款 Python 工具,可自动将分子系统从 SMILES 组装成 PDB 格式,从而简化分子动力学模拟设置。SMI2PDB 可以毫不费力地管理分子构型和定量,建立稳定的构象,应用随机旋转,并用 Sobol 序列将它们定位在模拟框中,以减少重叠。该脚本有助于在模拟中快速制备复杂的有机混合物,从而加强对新型材料的探索。
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引用次数: 0
PDB2DAT: Automating LAMMPS data file generation from PDB molecular systems using Python, Rdkit, and Pysimm PDB2DAT:使用 Python、Rdkit 和 Pysimm 从 PDB 分子系统自动生成 LAMMPS 数据文件
IF 2.1 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-05-01 DOI: 10.1016/j.simpa.2024.100656
Eli I. Assaf , Xueyan Liu , Peng Lin , Sandra Erkens

Pdb2dat, developed in Python, is an open-source, self-contained utility that facilitates the conversion of PDB files into LAMMPS data files, catering to the need of initializing atomistic simulation from initial atomic configurations. It extracts molecular details from PDB files, uses Rdkit and Xyz2mol for bonding analysis and 3D conformer generation, and uses Pysimm for assigning force field types and charges. Designed to be lightweight and fully Pythonic, pdb2dat is suitable for use in privilege-limited high-throughput environments. The output details system topologies for use in MD simulations, significantly simplifying the preparatory steps needed by researchers to explore materials phenomena through LAMMPS.

Pdb2dat 是用 Python 开发的一款开源、独立的实用程序,可帮助将 PDB 文件转换为 LAMMPS 数据文件,满足从初始原子构型初始化原子模拟的需要。它能从 PDB 文件中提取分子细节,使用 Rdkit 和 Xyz2mol 进行成键分析和三维构象生成,并使用 Pysimm 分配力场类型和电荷。pdb2dat 设计轻巧,完全采用 Pythonic 语言,适合在有权限限制的高通量环境中使用。输出结果详细说明了用于 MD 模拟的系统拓扑结构,大大简化了研究人员通过 LAMMPS 探索材料现象所需的准备步骤。
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引用次数: 0
Particle-Droplet-PBS: Population balance software for simulation of particle-induced droplet breakup in spray flame synthesis and suspension spray combustion 粒子-液滴-PBS:用于模拟喷雾火焰合成和悬浮喷雾燃烧中颗粒诱发的液滴破裂的种群平衡软件
IF 2.1 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-05-01 DOI: 10.1016/j.simpa.2024.100642
Ivan Skenderović, Frank Einar Kruis

The software ‘Particle Droplet Population Balance Simulation’ (Particle-Droplet-PBS) simulates the time of particle-shell formation and particle growth in burning spray droplets. Application examples are provided to demonstrate how the code can be used to incorporate a variety of particles, precursor chemicals and solvents. The software solves the population balance equations for particle coagulation and nucleation, while applying an adaptive grid method requiring only two cells per droplet. Thus, the computation time is drastically reduced. This enables users without access to high-performance work stations to run droplet simulations in a timely manner, making it a valuable tool for research and process engineering.

颗粒液滴种群平衡模拟"(Particle-Droplet-PBS)软件模拟燃烧喷雾液滴中颗粒壳形成和颗粒生长的时间。软件提供了应用示例,演示如何使用该代码将各种颗粒、前体化学品和溶剂结合在一起。该软件可求解颗粒凝结和成核的种群平衡方程,同时采用自适应网格方法,每个液滴只需两个单元格。因此,计算时间大大缩短。这样,没有高性能工作站的用户也能及时运行液滴模拟,使其成为研究和工艺工程的重要工具。
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引用次数: 0
Mathematica code for the topological analysis of Thom’s Catastrophes in 2 × 2 economic games 2 × 2 经济博弈中托马斯灾难拓扑分析的数学代码
IF 2.1 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-05-01 DOI: 10.1016/j.simpa.2024.100652
Michael S. Harré , Adam Harris , Scott McCallum

René Thom’s work on topological instabilities applied new methods to questions of dynamical stability that traditionally belonged to the domain of dynamical systems theorists. Topological instability focuses on universal properties of bifurcations in systems where multiple equilibria form and disappear as a function of system parameters. However, the complete mathematical description is quite abstract and the analysis benefits from graphical intuitions. Here we provide the code, in the form of a Mathematica notebook, used in our recent Games and Economic Behaviour paper (Harriset al., 2023). It illustrates our main results providing the intuition necessary to explore the bifurcations in the formal proofs.

勒内-托姆(René Thom)的拓扑不稳定性研究将新方法应用于传统上属于动力系统理论家领域的动力稳定性问题。拓扑不稳定性侧重于系统中分岔的普遍特性,即多个平衡点随着系统参数的变化而形成和消失。然而,完整的数学描述是相当抽象的,而分析则得益于图形直观。在此,我们以 Mathematica 笔记本的形式提供我们最近的论文《游戏与经济行为》(Harriset al.)它说明了我们的主要结果,为探索正式证明中的分岔提供了必要的直观性。
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引用次数: 0
A prototype for sentence classification using statistical methods 使用统计方法进行句子分类的原型
IF 2.1 Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Pub Date : 2024-05-01 DOI: 10.1016/j.simpa.2024.100651
Nishy Reshmi S. , Shreelekshmi R.

Classification of sentences is a challenging problem in the field of natural language processing. We present a prototype for classifying the pairs of sentences using their syntactic and semantic relations. The sentences are classified into three classes — entailment, contradiction and neutral. The grammatical relations of the sentences are extracted and these relations are represented as word embeddings using global vector, Glove. The word to word semantics is found using Wordnet semantic relations. The prototype is based on statistical measures which was implemented using Python 3.6.9 version.

句子分类是自然语言处理领域的一个难题。我们提出了一种利用句法和语义关系对句子进行分类的原型。句子被分为三类--蕴涵句、矛盾句和中性句。我们提取了句子的语法关系,并使用全局向量 Glove 将这些关系表示为词嵌入。单词与单词之间的语义则是通过 Wordnet 语义关系发现的。原型基于统计量,使用 Python 3.6.9 版本实现。
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引用次数: 0
期刊
Software Impacts
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