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Topological transition in filamentous cyanobacteria: from motion to structure 丝状蓝藻的拓扑转变:从运动到结构
IF 5.4 1区 物理与天体物理 Q1 PHYSICS, MULTIDISCIPLINARY Pub Date : 2024-11-20 DOI: 10.1038/s42005-024-01866-5
Jan Cammann, Mixon K. Faluweki, Nayara Dambacher, Lucas Goehring, Marco G. Mazza
Many active systems are capable of forming intriguing patterns at scales significantly larger than the size of their individual constituents. Cyanobacteria are one of the most ancient and important phyla of organisms that has allowed the evolution of more complex life forms. Despite its importance, the role of motility on the pattern formation of their colonies is not understood. Here, we investigate the large-scale collective effects and rich dynamics of gliding filamentous cyanobacteria colonies, while still retaining information about the individual constituents’ dynamics and their interactions. We investigate both the colony’s transient and steady-state dynamics and find good agreement with experiments. We furthermore show that the Péclet number and aligning interaction strength govern the system’s topological transition from an isotropic distribution to a state of large-scale reticulate patterns. Although the system is topologically non-trivial, the parallel and perpendicular pair correlation functions provide structural information about the colony, and thus can be used to extract information about the early stages of biofilm formation. Finally, we find that the effects of the filaments’ length cannot be reduced to a system of interacting points. Our model proves to reproduce both cyanobacteria colonies and systems of biofilaments where curvature is transported by motility. Active matter systems can spontaneously form structure. Using concepts of nonequilibrium statistical physics and experiments, this work demonstrates the existence of a topological transition in filamentous cyanobacteria colonies from an isotropic distribution to dense bundles organized in a reticulate pattern.
许多活跃的系统能够在远远大于其单个成分大小的尺度上形成奇妙的模式。蓝藻是最古老、最重要的生物门类之一,它使更复杂的生命形式得以进化。尽管其重要性不言而喻,但人们并不了解运动性对其菌落模式形成的作用。在此,我们研究了滑翔丝状蓝藻菌落的大规模集体效应和丰富的动态,同时还保留了单个成分的动态及其相互作用的信息。我们研究了菌落的瞬态和稳态动力学,发现与实验结果非常吻合。我们还进一步证明,贝克莱特数和排列相互作用强度控制着系统从各向同性分布到大尺度网状模式的拓扑转变。虽然该系统在拓扑上是非三维的,但平行和垂直对相关函数提供了菌落的结构信息,因此可用于提取生物膜形成早期阶段的信息。最后,我们发现细丝长度的影响不能简化为一个相互作用的点系统。事实证明,我们的模型既能再现蓝藻菌落,也能再现由运动传递曲率的生物丝系统。活性物质系统可以自发形成结构。利用非平衡态统计物理学的概念和实验,这项工作证明了蓝藻丝状菌落中存在从各向同性分布到以网状模式组织的密集束的拓扑转变。
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引用次数: 0
Benchmarking the optimization of optical machines with the planted solutions 用植入式解决方案优化光学设备的基准
IF 5.4 1区 物理与天体物理 Q1 PHYSICS, MULTIDISCIPLINARY Pub Date : 2024-11-19 DOI: 10.1038/s42005-024-01870-9
Nikita Stroev, Natalia G. Berloff, Nir Davidson
This research focuses on developing effective benchmarks for quadratic unconstrained binary optimization instances, crucial for evaluating the performance of Ising hardware and solvers. Currently, the field lacks accessible and reproducible models for systematically testing such systems, particularly in terms of detailed phase space characterization. Here, we introduce universal generative models based on an extension of Hebb’s rule of associative memory with asymmetric pattern weights. We conduct comprehensive calculations across different scales and dynamical equations, examining outcomes like the probabilities of reaching the ground state, planted state, spurious state, or other energy levels. Additionally, the generated problems reveal properties such as the easy-hard-easy complexity transition and complex solution cluster structures. This method offers a promising platform for analyzing and understanding the behavior of physical hardware and its simulations, contributing to future advancements in optimization technologies. The authors present a method for creating generative models that produce test instances for quadratic unconstrained binary optimization (QUBO) problems, inspired by Hebb’s rule. Their approach identifies key solution patterns and complexity transitions, providing a platform to evaluate the performance of Ising hardware and solvers efficiently.
这项研究的重点是为二次无约束二元优化实例开发有效的基准,这对评估伊辛硬件和求解器的性能至关重要。目前,该领域缺乏可访问、可重现的模型来系统地测试此类系统,特别是在详细的相空间特征方面。在此,我们介绍了基于非对称模式权重的联想记忆希伯规则扩展的通用生成模型。我们对不同尺度和动力学方程进行了全面计算,考察了达到基态、种植态、杂散态或其他能级的概率等结果。此外,生成的问题还揭示了易-难-易复杂性转变和复杂解簇结构等特性。这种方法为分析和理解物理硬件及其模拟的行为提供了一个前景广阔的平台,有助于未来优化技术的进步。作者介绍了一种创建生成模型的方法,该方法受 Hebb 规则的启发,可生成二次无约束二元优化(QUBO)问题的测试实例。他们的方法能识别关键的求解模式和复杂性转换,为有效评估伊辛硬件和求解器的性能提供了一个平台。
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引用次数: 0
Spontaneous flows and quantum analogies in heterogeneous active nematic films 异质活性向列薄膜中的自发流动和量子相似性
IF 5.4 1区 物理与天体物理 Q1 PHYSICS, MULTIDISCIPLINARY Pub Date : 2024-11-19 DOI: 10.1038/s42005-024-01864-7
Alexander J. H. Houston, Nigel J. Mottram
Incorporating the inherent heterogeneity of living systems into models of active nematics is essential to provide a more realistic description of biological processes such as bacterial growth, cell dynamics and tissue development. Spontaneous flow of a confined active nematic is a fundamental feature of these systems, in which the role of heterogeneity has not yet been considered. We therefore determine the form of spontaneous flow transition for an active nematic film with heterogeneous activity, identifying a correspondence between the unstable director modes and solutions to Schrödinger’s equation. We consider both activity gradients and steps between regions of distinct activity, finding that such variations can change the signature properties of the flow. The threshold activity required for the transition can be raised or lowered, the fluid flux can be reduced or reversed and interfaces in activity induce shear flows. In a biological context fluid flux influences the spread of nutrients while shear flows affect the behaviour of rheotactic microswimmers and can cause the deformation of biofilms. All the effects we identify are found to be strongly dependent on not simply the types of activity present in the film but also on how they are distributed. Incorporating the inherent heterogeneity of living systems into models of active nematics is essential to provide a realistic description of important biological processes. The authors determine the form of spontaneous flow transition for a heterogeneous active nematic film, finding a correspondence with Schrodinger’s equation and changes to signature properties of the flow and transition threshold.
要更真实地描述细菌生长、细胞动力学和组织发育等生物过程,就必须将生命系统固有的异质性纳入活动线粒体模型。封闭活性向列的自发流动是这些系统的一个基本特征,而异质性在其中的作用尚未得到考虑。因此,我们确定了具有异质活性的活性向列薄膜的自发流动转变形式,确定了不稳定的导演模式与薛定谔方程解之间的对应关系。我们同时考虑了活动梯度和不同活动区域之间的阶跃,发现这种变化会改变流动的特征特性。过渡所需的阈值活动可以提高或降低,流体通量可以减少或逆转,活动界面会诱发剪切流。在生物方面,流体通量会影响营养物质的传播,而剪切流则会影响流变微游生物的行为,并导致生物膜变形。我们发现,所有这些影响不仅在很大程度上取决于薄膜中存在的活动类型,还取决于它们的分布方式。将生物系统固有的异质性纳入活性线粒体模型对于真实描述重要的生物过程至关重要。作者确定了异质活性向列薄膜的自发流动转变形式,发现了与薛定谔方程的对应关系以及流动和转变阈值的特征特性变化。
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引用次数: 0
Quantum switch instabilities with an open control 具有开放控制的量子开关不稳定性
IF 5.4 1区 物理与天体物理 Q1 PHYSICS, MULTIDISCIPLINARY Pub Date : 2024-11-19 DOI: 10.1038/s42005-024-01843-y
Otavio A. D. Molitor, André H. A. Malavazi, Roberto Dobal Baldijão, Alexandre C. Orthey Jr., Ismael L. Paiva, Pedro R. Dieguez
The superposition of causal orders shows promise in various quantum technologies. However, the fragility of quantum systems arising from environmental interactions, leading to dissipative behavior and irreversibility, demands a deeper understanding of the possible instabilities in the coherent control of causal orders. In this work, we employ a collisional model to investigate the impact of an open control system on the generation of interference between two causal orders. We present the environmental instabilities for the switch of two arbitrary quantum operations and examine the influence of environmental temperature on each potential outcome of control post-selection. Additionally, we explore how environmental instabilities affect protocol performance, including switching between mutually unbiased measurement observables and refrigeration powered by causal order superposition, providing insights into broader implications. Using the quantum switch—a process involving a controlled operation followed by post-selection of the control—a system of interest can evolve under an effective dynamics governed by a superposition of operation orders. This work investigates how environmental influences on the control impact the desired superposition of orders in realistic scenarios.
因果顺序的叠加为各种量子技术带来了希望。然而,环境相互作用会导致量子系统的脆弱性,从而导致耗散行为和不可逆性,这就要求我们更深入地了解因果顺序相干控制中可能存在的不稳定性。在这项工作中,我们采用碰撞模型来研究开放式控制系统对两个因果顺序之间产生干扰的影响。我们提出了两种任意量子操作切换时的环境不稳定性,并考察了环境温度对控制后选择的每种潜在结果的影响。此外,我们还探讨了环境不稳定性如何影响协议性能,包括在互不偏倚的测量观测值和因果阶叠加驱动的制冷之间切换,为更广泛的影响提供了见解。利用量子开关--一个涉及受控操作后选择控制的过程--相关系统可以在受操作顺序叠加支配的有效动态下演化。这项工作研究了在现实场景中,环境对控制的影响如何影响所需的阶次叠加。
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引用次数: 0
Time persistence of climate and carbon flux networks 气候和碳通量网络的时间持久性
IF 5.4 1区 物理与天体物理 Q1 PHYSICS, MULTIDISCIPLINARY Pub Date : 2024-11-16 DOI: 10.1038/s42005-024-01862-9
Ting Qing, Fan Wang, Qiuyue Li, Gaogao Dong, Lixin Tian, Shlomo Havlin
The persistence of the global climate system is critical for assuring the sustainability of the natural ecosystem. However, persistence at a network level has been rarely discussed. Here we develop a framework to analyze the time persistence of the yearly networks of climate and carbon flux, based on cross-correlations between sites, using daily data from China, the contiguous United States, and the Europe land region. Our framework for determining the persistence is based on analyzing the similarity between the network structures in different years. Our results reveal that the similarity of climate and carbon flux networks in different years are within the range of 0.57 ± 0.07, implying that the climate and carbon flux in the Earth’s climate system are generally persistent and in a steady state. We find a very small decay in similarity when the gap between years increases. Moreover, we find that the persistence of climate variables and carbon flux in the three regions decreases when considering only long range links. Analyzing the persistence and evolution of the climate and carbon flux networks, enhance our understanding of the spatial and temporal evolution of the global climate system. The persistence of the global climate system is essential for the sustainability of natural ecosystems. This work develops a framework, generate climate and carbon flux networks and finds that the similarity of the networks in different years is 0.57 ± 0.07, implying that the system is generally stable and that the similarity decay is very small when the year gap increases.
全球气候系统的持久性对于确保自然生态系统的可持续性至关重要。然而,在网络层面上的持续性却很少被讨论。在此,我们利用中国、美国毗连地区和欧洲陆地地区的每日数据,基于站点之间的交叉相关性,建立了一个分析气候和碳通量年度网络时间持续性的框架。我们确定持续性的框架是基于对不同年份网络结构相似性的分析。我们的结果表明,不同年份的气候和碳通量网络相似度在 0.57 ± 0.07 的范围内,这意味着地球气候系统中的气候和碳通量总体上是持久的,处于稳定状态。我们发现,当年份之间的差距增大时,相似性的衰减非常小。此外,我们还发现,如果只考虑长程联系,三个地区气候变量和碳通量的持续性会降低。分析气候和碳通量网络的持续性和演化,有助于加深我们对全球气候系统时空演化的理解。全球气候系统的持久性对自然生态系统的可持续性至关重要。本研究建立了一个框架,生成了气候和碳通量网络,并发现不同年份网络的相似度为 0.57 ± 0.07,这意味着系统总体上是稳定的,而且当年份差距增大时,相似度衰减非常小。
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引用次数: 0
Anderson transition and mobility edges on hyperbolic lattices with randomly connected boundaries 具有随机连接边界的双曲晶格上的安德森转换和流动边缘
IF 5.4 1区 物理与天体物理 Q1 PHYSICS, MULTIDISCIPLINARY Pub Date : 2024-11-15 DOI: 10.1038/s42005-024-01848-7
Tianyu Li, Yi Peng, Yucheng Wang, Haiping Hu
Hyperbolic lattices, formed by tessellating the hyperbolic plane with regular polygons, exhibit a diverse range of exotic physical phenomena beyond conventional Euclidean lattices. Here, we investigate the impact of disorder on hyperbolic lattices and reveal that the Anderson localization occurs at strong disorder strength, accompanied by the presence of mobility edges. Taking the hyperbolic {p, q} = {3, 8} and {p, q} = {4, 8} lattices as examples, we employ finite-size scaling of both spectral statistics and the inverse participation ratio to pinpoint the transition point and critical exponents. Our findings indicate that the transition points tend to increase with larger values of {p, q} or curvature. In the limiting case of {∞, q}, we further determine its Anderson transition using the cavity method, drawing parallels with the random regular graph. Our work lays the cornerstone for a comprehensive understanding of Anderson transition and mobility edges on hyperbolic lattices. Anderson localization is a paradigmatic topic of condensed matter physics used to explain the insulating behavior of materials. This paper investigates the effect of disorder in hyperbolic lattices and finds that Anderson localization occurs at strong disorder strength, accompanied by the presence of mobility edges.
双曲晶格是用规则多边形拼成双曲面而形成的,它展现了超越传统欧几里得晶格的各种奇异物理现象。在这里,我们研究了无序对双曲晶格的影响,并揭示了安德森局域化发生在强无序强度下,并伴随着流动边缘的存在。以双曲{p, q} = {3, 8}和{p, q} = {4, 8}晶格为例,我们利用谱统计和反参与比的有限大小缩放来精确定位过渡点和临界指数。我们的研究结果表明,过渡点往往随着{p, q}或曲率值的增大而增大。在{∞, q}的极限情况下,我们使用空穴法进一步确定了安德森过渡,并将其与随机正则图进行了比较。我们的工作为全面理解双曲晶格上的安德森转换和流动边缘奠定了基石。安德森局域化是凝聚态物理学的一个典型课题,用于解释材料的绝缘行为。本文研究了双曲晶格中无序的影响,发现安德森局域化发生在强无序强度下,并伴随着迁移率边缘的存在。
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引用次数: 0
Multiplexed quantum repeaters based on single-photon interference with mild stabilization 基于温和稳定的单光子干涉的复用量子中继器
IF 5.4 1区 物理与天体物理 Q1 PHYSICS, MULTIDISCIPLINARY Pub Date : 2024-11-15 DOI: 10.1038/s42005-024-01849-6
Daisuke Yoshida, Tomoyuki Horikiri
Quantum repeaters are pivotal in the physical layer of the quantum internet, and quantum repeaters capable of efficient entanglement distribution are necessary for its development. Quantum repeater schemes based on single-photon interference are promising because of their potential efficiency. However, schemes involving first-order interference with photon sources at distant nodes require stringent phase stability of the components, which pose challenges for long-distance implementation. In this paper, we present a quantum repeater scheme that leverages single-photon interference and reduces the difficulty of achieving phase stabilization. Additionally, under specific conditions, our scheme achieves a higher entanglement distribution rate between end nodes compared with the existing schemes. Thus, the proposed approach could lead to improved rates with technologies that are currently unavailable but possible in the future and will ultimately facilitate the development of multimode quantum repeaters. Single-photon interference based quantum repeater schemes are promising due to their potential efficiency. Here, the authors offer a theoretical quantum repeater scheme with reduced complexity of phase stabilization and scope for higher entanglement rates between the end nodes.
量子中继器是量子互联网物理层的关键,而能够高效分配纠缠的量子中继器是量子互联网发展的必要条件。基于单光子干涉的量子中继器方案因其潜在的效率而大有可为。然而,涉及与遥远节点光子源的一阶干涉的方案要求组件具有严格的相位稳定性,这给远距离实施带来了挑战。在本文中,我们提出了一种量子中继器方案,它利用单光子干涉,降低了实现相位稳定的难度。此外,在特定条件下,与现有方案相比,我们的方案在终端节点之间实现了更高的纠缠分配率。因此,所提出的方法可以利用目前尚不存在但未来有可能实现的技术提高速率,并最终促进多模量子中继器的发展。基于单光子干涉的量子中继器方案因其潜在的效率而大有可为。在此,作者提出了一种理论上的量子中继器方案,该方案降低了相位稳定的复杂性,并可提高终端节点之间的纠缠率。
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引用次数: 0
Role of coherence in many-body Quantum Reservoir Computing 相干性在多体量子存储计算中的作用
IF 5.4 1区 物理与天体物理 Q1 PHYSICS, MULTIDISCIPLINARY Pub Date : 2024-11-14 DOI: 10.1038/s42005-024-01859-4
Ana Palacios, Rodrigo Martínez-Peña, Miguel C. Soriano, Gian Luca Giorgi, Roberta Zambrini
Quantum Reservoir Computing (QRC) offers potential advantages over classical reservoir computing, including inherent processing of quantum inputs and a vast Hilbert space for state exploration. Yet, the relation between the performance of reservoirs based on complex and many-body quantum systems and non-classical state features is not established. Through an extensive analysis of QRC based on a transverse-field Ising model we show how different quantum effects, such as quantum coherence and correlations, contribute to improving the performance in temporal tasks, as measured by the Information Processing Capacity. Additionally, we critically assess the impact of finite measurement resources and noise on the reservoir’s dynamics in different regimes, quantifying the limited ability to exploit quantum effects for increasing damping and noise strengths. Our results reveal a monotonic relationship between reservoir performance and coherence, along with the importance of quantum effects in the ergodic regime. Quantum Reservoir Computing leverages the quantum properties of physical systems for solving temporal tasks. This study shows the importance of quantum effects, such as coherence and superposition, in the reservoir’s performance for different dynamical regimes, while considering the impact of finite measurements and noisy environments.
与经典储层计算相比,量子储层计算(QRC)具有潜在的优势,包括量子输入的固有处理和用于状态探索的巨大希尔伯特空间。然而,基于复杂多体量子系统的储层性能与非经典状态特征之间的关系尚未确立。通过对基于横向场伊辛模型的 QRC 进行广泛分析,我们展示了不同的量子效应(如量子相干性和相关性)如何有助于提高时间任务的性能(以信息处理能力衡量)。此外,我们还批判性地评估了有限测量资源和噪声对不同状态下水库动态的影响,量化了利用量子效应提高阻尼和噪声强度的有限能力。我们的研究结果揭示了水库性能与相干性之间的单调关系,以及量子效应在遍历机制中的重要性。量子水库计算利用物理系统的量子特性来解决时间任务。这项研究显示了量子效应(如相干性和叠加性)在不同动力学状态下水库性能中的重要性,同时考虑了有限测量和噪声环境的影响。
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引用次数: 0
The influence of timescales and data injection schemes for reservoir computing using spin-VCSELs 利用自旋-VCSEL 进行储层计算时标和数据注入方案的影响
IF 5.4 1区 物理与天体物理 Q1 PHYSICS, MULTIDISCIPLINARY Pub Date : 2024-11-14 DOI: 10.1038/s42005-024-01858-5
Lukas Mühlnickel, Jonnel A. Jaurigue, Lina C. Jaurigue, Kathy Lüdge
Reservoir computing with photonic systems promises fast and energy efficient computations. Vertical emitting semiconductor lasers with two spin-polarized charge-carrier populations (spin-VCSEL), are good candidates for high-speed reservoir computing. With our work, we highlight the role of the internal dynamic coupling on the prediction performance. We present numerical evidence for the critical impact of different data injection schemes and internal timescales. A central finding is that the internal dynamics of all dynamical degrees of freedom can only be utilized if an appropriate perturbation via the input is chosen as data injection scheme. If the data is encoded via an optical phase difference, the internal spin-polarized carrier dynamics is not addressed but instead a faster data injection rate is possible. We find strong correlations of the prediction performance with the system response time and the underlying delay-induced bifurcation structure, which allows to transfer the results to other physical reservoir computing systems. The authors numerically investigate the reservoir computing performance of vertical emitting two-mode semiconductor lasers and show the crucial impact of dynamic coupling, injection schemes and system timescales. A central finding is that high dimensional internal dynamics can only be utilized if an appropriate perturbation via the input is chosen.
利用光子系统进行存储计算可实现快速、节能的计算。具有两个自旋偏振电荷载流子群的垂直发射半导体激光器(spin-VCSEL)是高速存储计算的理想候选者。通过我们的工作,我们强调了内部动态耦合对预测性能的作用。我们提出了不同数据注入方案和内部时间尺度的关键影响的数值证据。一个核心发现是,只有选择适当的输入扰动作为数据注入方案,才能利用所有动态自由度的内部动态。如果通过光学相位差对数据进行编码,则无法解决内部自旋极化载流子动力学问题,反而有可能实现更快的数据注入速率。我们发现预测性能与系统响应时间和底层延迟诱导分岔结构有很强的相关性,因此可以将结果应用于其他物理水库计算系统。作者对垂直发射双模半导体激光器的储层计算性能进行了数值研究,并展示了动态耦合、注入方案和系统时间尺度的重要影响。一个核心发现是,只有通过输入选择适当的扰动,才能利用高维内部动力学。
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引用次数: 0
Light-enhanced nonlinear Hall effect 光增强非线性霍尔效应
IF 5.4 1区 物理与天体物理 Q1 PHYSICS, MULTIDISCIPLINARY Pub Date : 2024-11-13 DOI: 10.1038/s42005-024-01820-5
Fang Qin, Rui Chen, Ching Hua Lee
The Hall response can be dramatically different from its quantized value in materials with broken inversion symmetry. This stems from the leading Hall contribution beyond the linear order, known as the Berry curvature dipole (BCD). While the BCD is in principle always present, it is typically very small outside of a narrow window close to a topological transition and is thus experimentally elusive without careful tuning of external fields, temperature, or impurities. We transcend this challenge by devising optical driving and quench protocols that enable practical and direct access to large BCD. Varying the amplitude of an incident circularly polarized laser drives a topological transition between normal and Chern insulator phases, and importantly allows the precise unlocking of nonlinear Hall currents comparable to or larger than the linear Hall contributions. This strong BCD engineering is even more versatile with our two-parameter quench protocol, as demonstrated in our experimental proposal. In this work, the authors investigate nonlinear Hall materials under optical driving. They find that nonlinear Hall materials can exhibit a strong light-enhanced nonlinear Hall response when excited by circularly polarized lasers.
在具有破碎反转对称性的材料中,霍尔响应可能与其量化值大相径庭。这源于超出线性阶的霍尔前导贡献,即贝里曲率偶极子(BCD)。虽然 BCD 原则上始终存在,但在拓扑转变附近的狭窄窗口外,它通常非常小,因此,如果不对外部场、温度或杂质进行仔细调整,在实验中是难以捉摸的。我们通过设计光学驱动和淬火协议超越了这一挑战,实现了对大 BCD 的实际和直接访问。改变入射圆偏振激光的振幅可以驱动正常绝缘体相与切尔绝缘体相之间的拓扑转变,更重要的是可以精确地解锁与线性霍尔贡献相当或更大的非线性霍尔电流。这种强大的 BCD 工程在我们的双参数淬火协议下用途更加广泛,这一点已在我们的实验提案中得到证明。在这项工作中,作者研究了光驱动下的非线性霍尔材料。他们发现,非线性霍尔材料在圆偏振激光的激励下,可以表现出强烈的光增强非线性霍尔响应。
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引用次数: 0
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Communications Physics
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