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Emerging trends in plant natural products biosynthesis: a chemical perspective 植物天然产物生物合成的新趋势:化学视角
IF 8.3 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-30 DOI: 10.1016/j.pbi.2024.102649
Sarah Szwarc, Pierre Le Pogam, Mehdi A. Beniddir
Biosynthetic pathways are multistep processes transforming simple substrates into more complex structures. Over the past two decades, our understanding of these pathways, especially for specialized plant metabolites, has significantly increased. This surge is due to numerous scientific advancements such as next-generation sequencing, improved analytical platforms, and metabolite-transcript networks. The uprising of data sharing through public databases has also fostered collaboration and knowledge dissemination. Growing concerns about the supply of therapeutic natural products and their environmental impact have led to exploring sustainable alternatives like heterologous expression, which requires extensive knowledge of these pathways. Herein, we review emerging approaches in biosynthetic pathway elucidations and their prospects for their efficient integration.
生物合成途径是将简单底物转化为更复杂结构的多步骤过程。在过去的二十年里,我们对这些途径的了解,尤其是对特殊植物代谢物的了解有了显著提高。这一突飞猛进得益于众多科学进步,如下一代测序、改进的分析平台和代谢物-转录物网络。通过公共数据库实现数据共享也促进了合作和知识传播。人们日益关注治疗性天然产品的供应及其对环境的影响,因此开始探索可持续的替代方法,如异源表达,这需要对这些途径有广泛的了解。在此,我们回顾了生物合成途径阐释的新兴方法及其有效整合的前景。
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引用次数: 0
Transcriptional junk: Waste or a key regulator in diverse biological processes? 转录垃圾:垃圾还是各种生物过程的关键调节器?
IF 8.3 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-26 DOI: 10.1016/j.pbi.2024.102639
Anwesha Anyatama, Tapasya Datta, Shambhavi Dwivedi, Prabodh Kumar Trivedi
Plant genomes, through their evolutionary journey, have developed a complex composition that includes not only protein-coding sequences but also a significant amount of non-coding DNA, repetitive sequences, and transposable elements, traditionally labeled as “junk DNA”. RNA molecules from these regions, labeled as “transcriptional junk,” include non-coding RNAs, alternatively spliced transcripts, untranslated regions (UTRs), and short open reading frames (sORFs). However, recent research shows that this genetic material plays crucial roles in gene regulation, affecting plant growth, development, hormonal balance, and responses to stresses. Additionally, some of these regulatory regions encode small proteins, such as miRNA-encoded peptides (miPEPs) and microProteins (miPs), which interact with DNA or nuclear proteins, leading to chromatin remodeling and modulation of gene expression. This review aims to consolidate our understanding of the diverse roles that these so-called “transcriptional junk” regions play in regulating various physiological processes in plants.
植物基因组在进化过程中形成了复杂的组成,不仅包括蛋白质编码序列,还包括大量非编码 DNA、重复序列和可转座元件(传统上称为 "垃圾 DNA")。这些区域的 RNA 分子被称为 "转录垃圾",包括非编码 RNA、替代剪接转录本、非翻译区(UTR)和短开放阅读框(sORF)。然而,最近的研究表明,这些遗传物质在基因调控中发挥着至关重要的作用,影响着植物的生长、发育、激素平衡和对胁迫的反应。此外,这些调控区中有一些编码小蛋白,如 miRNA 编码肽(miPEPs)和微蛋白(miPs),它们与 DNA 或核蛋白相互作用,导致染色质重塑和基因表达调控。本综述旨在巩固我们对这些所谓的 "转录垃圾 "区域在调控植物各种生理过程中所起的不同作用的认识。
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引用次数: 0
β-Glucosidases in specialized metabolism: Towards a new understanding of the gatekeepers of plant chemical arsenal 特殊代谢中的β-葡糖苷酶:重新认识植物化学武库的看门人
IF 8.3 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-25 DOI: 10.1016/j.pbi.2024.102638
Angeliki Stathaki , Georgia Pantidi , Margarita Thomopoulou , Konstantinos Koudounas
Plants produce an exceptional multitude of chemicals to compensate with challenging environments. Despite the structural pluralism of specialized metabolism, often defensive compounds are stored in planta as glycosides and reactive aglycones are conditionally activated by specific β-glucosidases—a large family of enzymes with pluripotent contribution in homeostasis and a pivotal role in plant chemical defense. Typically, these detonating enzymes are characterized by exceptional substrate specificity and, in several cases, even isoenzymes exhibit differentiated molecular or biochemical characteristics. This article focuses on important intrinsic characteristics of plant β-glucosidases detonating defensive compounds and highlights recent studies with novel implications in regulatory mechanisms.
植物会产生大量特殊的化学物质,以应对充满挑战的环境。尽管特化代谢的结构多种多样,但防御性化合物通常以苷的形式储存在植物体内,而活性苷凝物则由特定的β-葡萄糖苷酶有条件地激活--β-葡萄糖苷酶是一个庞大的酶家族,在植物体内平衡中具有多能性,在植物化学防御中起着关键作用。通常,这些引爆酶具有特殊的底物特异性,在某些情况下,甚至同工酶也表现出不同的分子或生化特征。本文重点介绍了植物β-葡萄糖苷酶引爆防御性化合物的重要内在特征,并着重介绍了对调控机制有新影响的最新研究。
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引用次数: 0
Plant cell walls: source of carbohydrate-based signals in plant-pathogen interactions 植物细胞壁:植物与病原体相互作用中基于碳水化合物的信号源
IF 8.3 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-21 DOI: 10.1016/j.pbi.2024.102630
Antonio Molina , Andrea Sánchez-Vallet , Lucía Jordá , Cristian Carrasco-López , José Juan Rodríguez-Herva , Emilia López-Solanilla

Plant cell walls are essential elements for disease resistance that pathogens need to overcome to colonise the host. Certain pathogens secrete a large battery of enzymes to hydrolyse plant cell wall polysaccharides, which leads to the release of carbohydrate-based molecules (glycans) that are perceived by plant pattern recognition receptors and activate pattern-triggered immunity and disease resistance. These released glycans are used by colonizing microorganisms as carbon source, chemoattractants to locate entry points at plant surface, and as signals triggering gene expression reprogramming. The release of wall glycans and their perception by plants and microorganisms determines plant-microbial interaction outcome. Here, we summarise and discuss the most recent advances in these less explored aspects of plant-microbe interaction.

植物细胞壁是抗病的基本要素,病原体需要克服这些要素才能在宿主体内定居。某些病原体会分泌大量酶来水解植物细胞壁多糖,从而释放出以碳水化合物为基础的分子(聚糖),这些分子会被植物模式识别受体感知,并激活模式触发免疫和抗病能力。定殖微生物利用这些释放的聚糖作为碳源和趋化吸引剂,以确定植物表面的进入点,并作为触发基因表达重编程的信号。植物和微生物对壁糖的释放和感知决定了植物与微生物相互作用的结果。在此,我们总结并讨论了植物与微生物相互作用中这些探索较少的方面的最新进展。
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引用次数: 0
Plant Pattern recognition receptors: Exploring their evolution, diversification, and spatiotemporal regulation 植物模式识别受体:探索它们的进化、多样化和时空调控
IF 8.3 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-19 DOI: 10.1016/j.pbi.2024.102631
Tianrun Li , Alba Moreno-Pérez , Gitta Coaker

Plant genomes possess hundreds of candidate surface localized receptors capable of recognizing microbial components or modified-self molecules. Surface-localized pattern recognition receptors (PRRs) can recognize proteins, peptides, or structural microbial components as nonself, triggering complex signaling pathways leading to defense. PRRs possess diverse extracellular domains capable of recognizing epitopes, lipids, glycans and polysaccharides. Recent work highlights advances in our understanding of the diversity and evolution of PRRs recognizing pathogen components. We also discuss PRR functional diversification, pathogen strategies to evade detection, and the role of tissue and age-related resistance for effective plant defense.

植物基因组拥有数百种候选的表面定位受体,能够识别微生物成分或修饰后的自身分子。表面定位模式识别受体(PRRs)可将蛋白质、肽或微生物结构成分识别为非自我,从而触发复杂的信号通路,导致防御。PRRs 具有多种胞外结构域,能够识别表位、脂质、糖类和多糖。最近的工作重点介绍了我们对识别病原体成分的 PRRs 多样性和进化的理解所取得的进展。我们还讨论了 PRR 的功能多样化、病原体逃避检测的策略以及组织和年龄相关抗性对植物有效防御的作用。
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引用次数: 0
Novel structural insights at the extracellular plant-pathogen interface 细胞外植物-病原体界面的新结构见解
IF 8.3 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-18 DOI: 10.1016/j.pbi.2024.102629
Brian Críostóir Mooney, Renier A.L. van der Hoorn

Plant pathogens represent a critical threat to global agriculture and food security, particularly under the pressures of climate change and reduced agrochemical use. Most plant pathogens initially colonize the extracellular space or apoplast and understanding the host–pathogen interactions that occur here is vital for engineering sustainable disease resistance in crops. Structural biology has played important roles in elucidating molecular mechanisms underpinning plant-pathogen interactions but only few studies have reported structures of extracellular complexes. This article highlights these resolved extracellular complexes by describing the insights gained from the solved structures of complexes consisting of CERK1-chitin, FLS2-flg22-BAK1, RXEG1-XEG1-BAK1 and PGIP2-FpPG. Finally, we discuss the potential of AI-based structure prediction platforms like AlphaFold as an alternative hypothesis generator to rapidly advance our molecular understanding of plant pathology and develop novel strategies to increase crop resilience against disease.

植物病原体对全球农业和粮食安全构成严重威胁,尤其是在气候变化和农用化学品使用减少的压力下。大多数植物病原体最初定殖于细胞外空间或细胞凋亡体,了解在此发生的宿主与病原体之间的相互作用对于在作物中设计可持续的抗病性至关重要。结构生物学在阐明植物与病原体相互作用的分子机制方面发挥了重要作用,但只有少数研究报告了细胞外复合物的结构。本文通过描述从已解决的 CERK1-几丁质、FLS2-flg22-BAK1、RXEG1-XEG1-BAK1 和 PGIP2-FpPG 复合物结构中获得的启示,重点介绍了这些已解决的胞外复合物。最后,我们讨论了基于人工智能的结构预测平台(如 AlphaFold)作为另一种假设生成器的潜力,以快速推进我们对植物病理学的分子认识,并开发新的战略来提高作物的抗病能力。
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引用次数: 0
New frontiers in the biosynthesis of psychoactive specialized metabolites 精神活性特殊代谢物生物合成的新领域
IF 8.3 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-16 DOI: 10.1016/j.pbi.2024.102626
Ginny Li, Peter J. Facchini

The recent relaxation of psychedelic drug regulations has prompted extensive clinical investigation into their potential use to treat diverse mental health conditions including anxiety, depression, post-traumatic stress, and substance-abuse disorders. Most clinical trials have relied on a small number of known molecules found in nature, such as psilocybin, or long-known synthetic analogs of natural metabolites, including lysergic acid diethylamide (LSD). Elucidation of biosynthetic pathways leading to several psychedelic compounds has established an opportunity to use synthetic biology as a complement to synthetic chemistry for the preparation of novel derivatives with potentially superior pharmacological properties compared with known drugs. Herein we review the metabolic biochemistry of pathways from plants, fungi and animals that yield the medicinally important hallucinogenic specialized metabolites ibogaine, mescaline, psilocybin, lysergic acid, and N,N-dimethyltryptamine (DMT). We also summarize the reconstitution of these pathways in microorganisms and comment on the integration of native and non-native enzymes to prepare novel derivatives.

最近,迷幻药法规的放宽促使人们对迷幻药治疗焦虑、抑郁、创伤后应激和药物滥用等各种精神疾病的潜力进行了广泛的临床研究。大多数临床试验都依赖于在自然界中发现的少量已知分子,如迷幻药,或早已为人所知的天然代谢物的合成类似物,包括麦角酰二乙胺(LSD)。阐明了几种迷幻化合物的生物合成途径,为利用合成生物学作为合成化学的补充,制备新型衍生物提供了机会,这些衍生物的药理特性可能优于已知药物。在此,我们回顾了植物、真菌和动物产生具有重要药用价值的致幻专一代谢物伊博格碱、麦司卡林、迷幻药、麦角酸和 N,N-二甲基色胺(DMT)的途径的代谢生物化学。我们还总结了在微生物中重组这些途径的情况,并对整合本地和非本地酶来制备新型衍生物发表了评论。
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引用次数: 0
At knifepoint: Appressoria-dependent turgor pressure of filamentous plant pathogens 在刀尖上丝状植物病原体依赖外植体的张力压力
IF 8.3 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-11 DOI: 10.1016/j.pbi.2024.102628
Tobias Müller, David Scheuring

Filamentous pathogens need to overcome plant barriers for successful infection. To this end, special structures, most commonly appressoria, are used for penetration. In differentiated appressoria, the generation of high turgor pressure is mandatory to breach plant cell wall and cuticle. However, quantitative description of turgor pressure and resulting invasive forces are only described for a handful of plant pathogens. Recent advances in methodology allowed determination of surprisingly high pressures and corresponding forces in oomycetes and a necrotrophic fungus. Here, we describe turgor generation in appressoria as essential function for host penetration. We summarize the known experimentally determined turgor pressure as well as invasive forces and discuss their universal role in plant pathogen infection.

丝状病原体需要克服植物障碍才能成功感染。为此,病原体需要利用特殊结构(最常见的是附着体)进行穿透。在分化的附着体中,必须产生较高的抗压强度才能突破植物细胞壁和角质层。然而,只有少数几种植物病原体对睾酮压力和由此产生的侵袭力进行了定量描述。最近方法学的进步使得我们能够测定卵菌和一种坏死性真菌令人惊讶的高压力和相应的侵袭力。在这里,我们描述了作为宿主穿透的基本功能,在附着体中产生的张力。我们总结了已知的实验测定的变压和侵染力,并讨论了它们在植物病原体感染中的普遍作用。
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引用次数: 0
Different roles of the phytohormone gibberellin in the wide-spread arbuscular mycorrhiza and in orchid mycorrhiza 植物激素赤霉素在广布的树胶菌根和兰花菌根中的不同作用
IF 8.3 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-08 DOI: 10.1016/j.pbi.2024.102627
Chihiro Miura , Takaya Tominaga , Hironori Kaminaka

Gibberellin (GA) is a classical plant hormone that regulates many physiological processes, such as plant growth, development, and environmental responses. GA inhibits arbuscular mycorrhizal (AM) symbiosis, the most ancient and widespread type of mycorrhizal symbiosis. Knowledge about mycorrhizal symbioses at the molecular level has been obtained mainly in model plants such as legumes and rice. In contrast, molecular mechanisms in non-model plants are still unclear. Recent studies have revealed the novel roles of GA in mycorrhizal symbioses: its positive effect in Paris-type AM symbiosis in Eustoma grandiflorum and its negative effect on both seed germination and mycorrhizal symbiosis in orchids. This review focuses on the recent data on GA function in AM and orchid mycorrhizal symbioses.

赤霉素(GA)是一种经典的植物激素,可调节植物生长、发育和环境反应等许多生理过程。GA 可抑制丛枝菌根(AM)共生,这是菌根共生中最古老、最普遍的一种类型。有关菌根共生的分子水平知识主要是从豆科植物和水稻等模式植物中获得的。相比之下,非模式植物的分子机制尚不清楚。最近的研究揭示了 GA 在菌根共生中的新作用:它对桔梗的巴黎型 AM 共生有积极作用,对兰花的种子萌发和菌根共生有消极作用。本综述将重点介绍有关 GA 在 AM 和兰花菌根共生中功能的最新数据。
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引用次数: 0
Meddling with the microbiota: Fungal tricks to infect plant hosts 干预微生物群:真菌感染植物宿主的伎俩
IF 8.3 2区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-09-05 DOI: 10.1016/j.pbi.2024.102622
Fantin Mesny, Martha Bauer , Jinyi Zhu , Bart P.H.J. Thomma

Plants associate with a wealth of microbes, collectively referred to as the plant microbiota, whose composition is determined by host plant genetics, immune responses, environmental factors and intermicrobial relations. Unsurprisingly, microbiota compositions change during disease development. Recent evidence revealed that some of these changes can be attributed to effector proteins with antimicrobial activities that are secreted by plant pathogens to manipulate host microbiota to their advantage. Intriguingly, many of these effectors have ancient origins, predating land plant emergence, and evolved over long evolutionary trajectories to acquire selective antimicrobial activities to target microbial antagonists in host plant microbiota. Thus, we argue that host-pathogen co-evolution likely involved arms races within the host-associated microbiota.

植物与大量微生物(统称为植物微生物群)有联系,其组成由寄主植物遗传、免疫反应、环境因素和微生物间关系决定。毫不奇怪,微生物群的组成在疾病发展过程中会发生变化。最近的证据表明,其中一些变化可归因于植物病原体分泌的具有抗菌活性的效应蛋白,这些蛋白能操纵宿主微生物群,使其对自己有利。耐人寻味的是,这些效应蛋白中有许多起源古老,早于陆生植物的出现,并经过漫长的进化过程,获得了选择性抗菌活性,以宿主植物微生物群中的微生物拮抗剂为目标。因此,我们认为宿主与病原体的共同进化可能涉及宿主相关微生物群内部的军备竞赛。
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引用次数: 0
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Current opinion in plant biology
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