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A 3-D Anatomy-Guided Self-Training Segmentation Framework for Unpaired Cross-Modality Medical Image Segmentation 用于非配对跨模态医学图像分割的三维解剖学引导自我训练分割框架
IF 4.4 Q1 Physics and Astronomy Pub Date : 2023-11-14 DOI: 10.1109/TRPMS.2023.3332619
Yuzhou Zhuang;Hong Liu;Enmin Song;Xiangyang Xu;Yongde Liao;Guanchao Ye;Chih-Cheng Hung
Unsupervised domain adaptation (UDA) methods have achieved promising performance in alleviating the domain shift between different imaging modalities. In this article, we propose a robust two-stage 3-D anatomy-guided self-training cross-modality segmentation (ASTCMSeg) framework based on UDA for unpaired cross-modality image segmentation, including the anatomy-guided image translation and self-training segmentation stages. In the translation stage, we first leverage the similarity distributions between patches to capture the latent anatomical relationships and propose an anatomical relation consistency (ARC) for preserving the correct anatomical relationships. Then, we design a frequency domain constraint to enforce the consistency of important frequency components during image translation. Finally, we integrate the ARC and frequency domain constraint with contrastive learning for anatomy-guided image translation. In the segmentation stage, we propose a context-aware anisotropic mesh network for segmenting anisotropic volumes in the target domain. Meanwhile, we design a volumetric adaptive self-training method that dynamically selects appropriate pseudo-label thresholds to learn the abundant label information from unlabeled target volumes. Our proposed method is validated on the cross-modality brain structure, cardiac substructure, and abdominal multiorgan segmentation tasks. Experimental results show that our proposed method achieves state-of-the-art performance in all tasks and significantly outperforms other 2-D based or 3-D based UDA methods.
无监督领域适应(UDA)方法在缓解不同成像模式之间的领域偏移方面取得了可喜的成绩。在本文中,我们提出了一种基于 UDA 的鲁棒两阶段三维解剖引导自我训练跨模态分割(ASTCMSeg)框架,用于无配对跨模态图像分割,包括解剖引导图像平移和自我训练分割阶段。在平移阶段,我们首先利用斑块间的相似性分布来捕捉潜在的解剖关系,并提出一种解剖关系一致性(ARC)来保留正确的解剖关系。然后,我们设计了一种频域约束,在图像翻译过程中强制执行重要频率成分的一致性。最后,我们将 ARC 和频域约束与对比学习相结合,实现解剖引导的图像翻译。在分割阶段,我们提出了一种情境感知各向异性网状网络,用于分割目标域中的各向异性体积。同时,我们还设计了一种体积自适应自我训练方法,可动态选择适当的伪标签阈值,从未标明的目标体积中学习丰富的标签信息。我们提出的方法在跨模态大脑结构、心脏亚结构和腹部多器官分割任务中得到了验证。实验结果表明,我们提出的方法在所有任务中都达到了最先进的性能,并明显优于其他基于二维或三维的 UDA 方法。
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引用次数: 0
Effect of Detector Placement on Joint Estimation in X-Ray Fluorescence Emission Tomography 探测器位置对 X 射线荧光发射断层成像中联合估算的影响
IF 4.4 Q1 Physics and Astronomy Pub Date : 2023-11-13 DOI: 10.1109/TRPMS.2023.3332288
Hadley DeBrosse;Ling Jian Meng;Patrick La Rivière
Imaging the spatial distribution of low concentrations of metal is a growing problem of interest with applications in medical and material sciences. X-ray fluorescence emission tomography (XFET) is an emerging metal mapping imaging modality with potential sensitivity improvements and practical advantages over other methods. However, XFET detector placement must first be optimized to ensure accurate metal density quantification and adequate spatial resolution. In this work, we first use singular value decomposition of the imaging model and eigendecomposition of the object-specific Fisher information matrix to study how detector arrangement affects spatial resolution and feature preservation. We then perform joint image reconstructions of a numerical gold phantom. For this phantom, we show that two parallel detectors provide metal quantification with similar accuracy to four detectors, despite the resulting anisotropic spatial resolution in the attenuation map estimate. Two orthogonal detectors provide improved spatial resolution along one axis, but underestimate the metal concentration in distant regions. Therefore, this work demonstrates the minor effect of using fewer, but strategically placed, detectors in the case where detector placement is restricted. This work is a critical investigation into the limitations and capabilities of XFET prior to its translation to preclinical and benchtop uses.
对低浓度金属的空间分布进行成像是医学和材料科学领域日益关注的问题。X 射线荧光发射断层扫描(XFET)是一种新兴的金属绘图成像方式,与其他方法相比,它具有潜在的灵敏度改进和实用优势。然而,XFET 探测器的放置必须首先进行优化,以确保准确的金属密度量化和足够的空间分辨率。在这项工作中,我们首先使用成像模型的奇异值分解和特定对象费舍尔信息矩阵的高分解来研究探测器的布置如何影响空间分辨率和特征保存。然后,我们对一个数值黄金模型进行了联合图像重建。在该模型中,我们发现尽管衰减图估算的空间分辨率各向异性,但两个平行探测器提供的金属量化精度与四个探测器相似。两个正交探测器沿一条轴线提高了空间分辨率,但低估了远处区域的金属浓度。因此,这项工作展示了在探测器位置受限的情况下,使用较少但有策略地放置探测器的微小效果。在将 XFET 应用于临床前和台式设备之前,这项工作是对其局限性和能力的重要研究。
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引用次数: 0
2023 Index IEEE Transactions on Radiation and Plasma Medical Sciences Vol. 7 2023 IEEE辐射与等离子体医学科学汇刊第7卷
IF 4.4 Q1 Physics and Astronomy Pub Date : 2023-11-08 DOI: 10.1109/TRPMS.2023.3330365
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引用次数: 0
DoseTransfer: A Transformer Embedded Model With Transfer Learning for Radiotherapy Dose Prediction of Cervical Cancer 剂量转移:用于宫颈癌放疗剂量预测的具有迁移学习功能的变压器嵌入式模型
IF 4.4 Q1 Physics and Astronomy Pub Date : 2023-11-07 DOI: 10.1109/TRPMS.2023.3330772
Lu Wen;Jianghong Xiao;Chen Zu;Xi Wu;Jiliu Zhou;Xingchen Peng;Yan Wang
Cervical cancer stands as a prominent female malignancy, posing a serious threat to women’s health. The clinical solution typically involves time-consuming and laborious radiotherapy planning. Although convolutional neural network (CNN)-based models have been investigated to automate the radiotherapy planning by predicting its outcomes, i.e., dose distribution maps, the insufficiency of data in the cervical cancer dataset limits the prediction performance and generalization of models. Additionally, the intrinsic locality of convolution operations also hinders models from capturing dose information at a global range, limiting the prediction accuracy. In this article, we propose a transfer learning framework embedded with transformer, namely, DoseTransfer, to automatically predict the dose distribution for cervical cancer. To address the limited data in the cervical cancer dataset, we leverage highly correlated clinical information from rectum cancer and transfer this knowledge in a two-phase framework. Specifically, the first phase is the pretraining phase which aims to pretrain the model with the rectum cancer dataset and extract prior knowledge from rectum cancer, while the second phase is the transferring phase where the priorly learned knowledge is effectively transferred to cervical cancer and guides the model to achieve better accuracy. Moreover, both phases are embedded with transformers to capture the global dependencies ignored by CNN, learning wider feature representations. Experimental results on the in-house datasets (i.e., rectum cancer dataset and cervical cancer dataset) have demonstrated the effectiveness of the proposed method.
宫颈癌是突出的女性恶性肿瘤,严重威胁着妇女的健康。临床解决方案通常包括费时费力的放疗计划。虽然已经研究了基于卷积神经网络(CNN)的模型,通过预测放疗结果(即剂量分布图)来实现放疗计划的自动化,但宫颈癌数据集的数据不足限制了模型的预测性能和泛化。此外,卷积操作的固有局部性也阻碍了模型捕捉全局范围内的剂量信息,从而限制了预测的准确性。在这篇文章中,我们提出了一种嵌入了转换器的迁移学习框架,即 DoseTransfer,用于自动预测宫颈癌的剂量分布。针对宫颈癌数据集数据有限的问题,我们利用了直肠癌中高度相关的临床信息,并在一个两阶段框架中转移了这些知识。具体来说,第一阶段是预训练阶段,旨在利用直肠癌数据集对模型进行预训练,并从直肠癌中提取先验知识;第二阶段是转移阶段,将先验知识有效地转移到宫颈癌中,并指导模型达到更高的准确度。此外,这两个阶段都嵌入了转换器,以捕捉 CNN 忽略的全局依赖关系,学习更广泛的特征表征。在内部数据集(即直肠癌数据集和宫颈癌数据集)上的实验结果证明了所提方法的有效性。
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引用次数: 0
Uconnect: Synergistic Spectral CT Reconstruction With U-Nets Connecting the Energy Bins Uconnect:利用 U 型网络连接能量盒进行协同频谱 CT 重构
IF 4.4 Q1 Physics and Astronomy Pub Date : 2023-11-03 DOI: 10.1109/TRPMS.2023.3330045
Zhihan Wang;Alexandre Bousse;Franck Vermet;Jacques Froment;Béatrice Vedel;Alessandro Perelli;Jean-Pierre Tasu;Dimitris Visvikis
Spectral computed tomography (CT) offers the possibility to reconstruct attenuation images at different energy levels, which can be then used for material decomposition. However, traditional methods reconstruct each energy bin individually and are vulnerable to noise. In this article, we propose a novel synergistic method for spectral CT reconstruction, namely, Uconnect. It utilizes trained convolutional neural networks (CNNs) to connect the energy bins to a latent image so that the full binned data is used synergistically. We experiment on two types of low-dose data: 1) simulated and 2) real patient data. Qualitative and quantitative analysis show that our proposed Uconnect outperforms state-of-the-art model-based iterative reconstruction (MBIR) techniques as well as CNN-based denoising.
光谱计算机断层扫描(CT)可以重建不同能量级别的衰减图像,然后用于材料分解。然而,传统的方法是单独重建每个能级,容易受到噪声的影响。在本文中,我们提出了一种用于光谱 CT 重建的新型协同方法,即 Uconnect。它利用训练有素的卷积神经网络(CNN)将能量分区与潜在图像连接起来,从而协同使用完整的分区数据。我们对两种低剂量数据进行了实验:1)模拟数据;2)真实患者数据。定性和定量分析表明,我们提出的 Uconnect 优于最先进的基于模型的迭代重建(MBIR)技术和基于 CNN 的去噪技术。
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引用次数: 0
Member Get-A-Member (MGM) Program 会员获得会员资格(MGM)计划
IF 4.4 Q1 Physics and Astronomy Pub Date : 2023-11-02 DOI: 10.1109/TRPMS.2023.3325699
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引用次数: 0
IEEE Transactions on Radiation and Plasma Medical Sciences Information for Authors IEEE辐射和等离子体医学科学汇刊作者信息
IF 4.4 Q1 Physics and Astronomy Pub Date : 2023-11-02 DOI: 10.1109/TRPMS.2023.3325693
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引用次数: 0
IEEE Transactions on Radiation and Plasma Medical Sciences Publication Information IEEE辐射与等离子体医学科学汇刊信息
IF 4.4 Q1 Physics and Astronomy Pub Date : 2023-11-02 DOI: 10.1109/TRPMS.2023.3325695
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引用次数: 0
Development and Evaluation of 0.35-mm-Pitch PET Detectors With Different Reflector Arrangements 不同反射面配置的0.35 mm- pitch PET探测器的研制与评价
IF 4.4 Q1 Physics and Astronomy Pub Date : 2023-11-01 DOI: 10.1109/TRPMS.2023.3307128
Xi Zhang, Xin Yu, Heng Zhang, Changlin Liu, H. Sabet, S. Xie, Jianfeng Xu, Q. Peng
The spatial resolutions of preclinical positron emission tomography (PET) imagers are largely determined by the size of the crystals. This study explores methods to construct PET detectors using crystals with ultrasmall cross Section for preclinical PET imagers with ultrahigh resolution. Three $16times 16$ segmented LYSO: Ce crystal arrays were built with different reflectors and assembling techniques using $0.25times 0.25times 6.25,,{mathrm{ mm}}^{3}$ pixels. The crystal arrays were readout by 3-mm SiPMs with a crystal-to-SiPM pixel area ratio of approximately 1:94, and the signals were recorded with custom-designed read-out electronics. Two coupling configurations were conducted. The arrays were evaluated in terms of flood histogram, energy resolution, and timing resolution. The first array, constructed with discrete LYSO crystals filled with BaSO4 reflectors, had nonuniformly distributed decoding spots in the flood histogram. The second array, constructed with enhanced specular reflector (ESR) reflectors using the slab-sandwich-slice (SSS) production method, had a distorted flood histogram. The third array, constructed with the combination of ESR and BaSO4 using the SSS production method, achieved the best flood histogram in terms of crystal spot uniformity and peak-to-valley ratio (2.80±0.53). The third array also demonstrated good energy resolution (14.89%±2.30%) and timing resolution (926.5 ps). These findings suggest that the SSS production method using the combined reflectors of ESR and BaSO4 is a potential method to construct detectors for ultrahigh-resolution PET imagers.
临床前正电子发射断层成像(PET)成像仪的空间分辨率很大程度上取决于晶体的大小。本研究探索了利用超小截面晶体构建PET探测器的方法,用于超高分辨率的临床前PET成像仪。采用$0.25times 0.25times 6.25,,{ mathm {mm}}^{3}$像素,构建了3个$16times 16$分段LYSO: Ce晶体阵列。晶体阵列通过3毫米sipm读出,晶体与sipm像素面积比约为1:94,信号通过定制设计的读出电子设备记录。进行了两种耦合配置。根据洪水直方图、能量分辨率和时间分辨率对阵列进行评估。第一个阵列是用离散的LYSO晶体填充BaSO4反射器构建的,在洪水直方图中具有不均匀分布的解码点。第二个阵列采用增强镜面反射器(ESR)反射器,采用板-三明治-切片(SSS)生产方法,具有扭曲的洪水直方图。第三个阵列采用SSS生成法将ESR和BaSO4组合构建,在晶体斑点均匀性和峰谷比(2.80±0.53)方面获得了最佳的洪水直方图。该阵列具有良好的能量分辨率(14.89%±2.30%)和时序分辨率(926.5 ps)。这些发现表明,利用ESR和BaSO4的组合反射器生产SSS的方法是一种构建超高分辨率PET成像仪探测器的潜在方法。
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引用次数: 0
Exploiting Cherenkov Radiation With BGO-Based Metascintillators 利用基于bgo的超振荡子开发切伦科夫辐射
IF 4.4 Q1 Physics and Astronomy Pub Date : 2023-11-01 DOI: 10.1109/TRPMS.2023.3310581
R. Latella, Antonio J. Gonzalez, D. Bonifacio, M. Kovylina, A. Griol, J. Benlloch, P. Lecoq, G. Konstantinou
In time-of-flight positron emission tomography (TOF-PET), the timing capabilities of the scintillation-based detector play an important role. An approach for fast timing is using the so-called metascintillators, which combine two materials leading to the synergistic blending of their favorable characteristics. An added effect for BGO-based metascintillators is taking advantage of better transportation of Cherenkov photons through UV-transparent materials such as plastic (type EJ232). To prove this, we use an optimized Coincidence Time Resolution (CTR) setup based on electronic boards with two output signals (timing and energy) and near-ultraviolet (NUV) and vacuum-ultraviolet (VUV) silicon photomultipliers (SiPMs) from Fondazione Bruno Kessler (FBK), along with different coupling materials. As a reference detector, we employed a $3times 3times 5$ -mm3 LYSO:Ce,Ca crystal pixel coupled with optical grease to an NUV-HD SiPM. The evaluation is based on low-threshold rise time, energy and time of arrival of event datasets. Timing results of a BGO/EJ $232,,3times 3times 15$ -mm3 metapixel show detector time resolutions (DTRs) of 159 ps for the full photopeak. We demonstrate the possibility of event discrimination using subsets with different DTR from the rise time distributions (RTDs). Finally, we present the synergistic capability of metascintillators to enhance Cherenkov photons detection when used along with VUV-sensitive SiPMs.
在飞行时间正电子发射断层成像(TOF-PET)中,基于闪烁的探测器的定时能力起着重要的作用。一种快速计时的方法是使用所谓的超振荡子,它将两种材料结合在一起,从而使它们的有利特性协同混合。基于bgo的超谐振子的一个附加效应是利用切伦科夫光子通过紫外线透明材料(如塑料(EJ232型))的更好传输。为了证明这一点,我们使用了一个优化的符合时间分辨率(CTR)设置,该设置基于具有两个输出信号(时序和能量)的电子板和来自布鲁诺凯斯勒基金会(FBK)的近紫外(NUV)和真空紫外(VUV)硅光电倍增管(SiPMs),以及不同的耦合材料。作为参考探测器,我们将$3 × 3 × 5$ -mm3 LYSO:Ce,Ca晶体像素与光学润滑脂耦合到NUV-HD SiPM。基于事件数据集的低阈值上升时间、能量和到达时间进行评价。BGO/EJ $232,,3乘以3乘以15$ -mm3元像素的时序结果显示,探测器在全光峰时的时间分辨率(DTRs)为159 ps。我们使用与上升时间分布(rtd)具有不同DTR的子集来证明事件区分的可能性。最后,我们提出了超振荡子的协同能力,以增强切伦科夫光子检测,当与vv敏感SiPMs一起使用时。
{"title":"Exploiting Cherenkov Radiation With BGO-Based Metascintillators","authors":"R. Latella, Antonio J. Gonzalez, D. Bonifacio, M. Kovylina, A. Griol, J. Benlloch, P. Lecoq, G. Konstantinou","doi":"10.1109/TRPMS.2023.3310581","DOIUrl":"https://doi.org/10.1109/TRPMS.2023.3310581","url":null,"abstract":"In time-of-flight positron emission tomography (TOF-PET), the timing capabilities of the scintillation-based detector play an important role. An approach for fast timing is using the so-called metascintillators, which combine two materials leading to the synergistic blending of their favorable characteristics. An added effect for BGO-based metascintillators is taking advantage of better transportation of Cherenkov photons through UV-transparent materials such as plastic (type EJ232). To prove this, we use an optimized Coincidence Time Resolution (CTR) setup based on electronic boards with two output signals (timing and energy) and near-ultraviolet (NUV) and vacuum-ultraviolet (VUV) silicon photomultipliers (SiPMs) from Fondazione Bruno Kessler (FBK), along with different coupling materials. As a reference detector, we employed a $3times 3times 5$ -mm3 LYSO:Ce,Ca crystal pixel coupled with optical grease to an NUV-HD SiPM. The evaluation is based on low-threshold rise time, energy and time of arrival of event datasets. Timing results of a BGO/EJ $232,,3times 3times 15$ -mm3 metapixel show detector time resolutions (DTRs) of 159 ps for the full photopeak. We demonstrate the possibility of event discrimination using subsets with different DTR from the rise time distributions (RTDs). Finally, we present the synergistic capability of metascintillators to enhance Cherenkov photons detection when used along with VUV-sensitive SiPMs.","PeriodicalId":46807,"journal":{"name":"IEEE Transactions on Radiation and Plasma Medical Sciences","volume":null,"pages":null},"PeriodicalIF":4.4,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91017878","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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IEEE Transactions on Radiation and Plasma Medical Sciences
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