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Mechanism and application of bacterial exopolysaccharides: An advanced approach for sustainable heavy metal abolition from soil 细菌外多糖的机制和应用:可持续去除土壤中重金属的先进方法
IF 2.4 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-22 DOI: 10.1016/j.carres.2024.109247
Ankita Ghosh, Diksha Sah, Moumita Chakraborty, J.P.N. Rai

The escalation of heavy metal pollutants in soils and effluents, driven by industrialization and human activities, poses significant environmental and health risks. Conventional remediation methods are often costly and ineffective, prompting a shift towards sustainable alternatives such as biological treatments. Natural biosorbents, including microbial cells and their byproducts, have emerged as promising solutions. One such approach involves leveraging exopolysaccharides (EPS), complex high-molecular-weight biopolymers synthesized by microbes under environmental stress conditions. EPS are intricate organic macromolecules comprising proteins, polysaccharides, uronic acids, humic compounds, and lipids, either located within microbial cells or secreted into their surroundings. Their anionic functional groups enable efficient electrostatic binding of cationic heavy metals, making EPS effective biosorbents for soil remediation. This review thoroughly explores the pivotal role of bacterial EPS in the removal of heavy metals, focusing on EPS biosynthesis mechanisms, the dynamics of interaction with heavy metals, and case studies that illustrate their effectiveness in practical remediation strategies. By highlighting these aspects, the review underscores the innovation and practical implications of EPS-based bioremediation technologies, demonstrating their potential to address critical environmental challenges effectively while paving the way for sustainable environmental management practices. Key findings reveal that EPS exhibit robust metal-binding capacities, facilitated by their anionic functional groups, thereby offering a promising solution for mitigating metal pollution in diverse environmental matrices.

在工业化和人类活动的推动下,土壤和废水中的重金属污染物不断增加,对环境和健康构成了重大风险。传统的修复方法往往成本高昂且效果不佳,这促使人们转向生物处理等可持续的替代方法。天然生物吸附剂,包括微生物细胞及其副产品,已成为前景广阔的解决方案。其中一种方法是利用外多糖(EPS),这是微生物在环境压力条件下合成的复杂的高分子量生物聚合物。EPS 是一种复杂的有机大分子,由蛋白质、多糖、尿酸、腐殖化合物和脂质组成,存在于微生物细胞内或分泌到周围环境中。它们的阴离子功能基团能有效地静电结合阳离子重金属,使 EPS 成为土壤修复的有效生物吸附剂。这篇综述深入探讨了细菌 EPS 在清除重金属方面的关键作用,重点关注 EPS 的生物合成机制、与重金属相互作用的动力学,以及说明其在实际修复策略中有效性的案例研究。通过强调这些方面,综述强调了基于 EPS 的生物修复技术的创新性和实际意义,展示了其有效应对重大环境挑战的潜力,同时为可持续环境管理实践铺平了道路。主要研究结果表明,EPS 在其阴离子官能团的促进下表现出强大的金属结合能力,从而为减轻各种环境基质中的金属污染提供了一种前景广阔的解决方案。
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引用次数: 0
“Glycans in Trained Immunity: Educators of innate immune memory in homeostasis and disease” "训练有素的免疫中的糖:稳态和疾病中先天免疫记忆的教育者"
IF 2.4 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-20 DOI: 10.1016/j.carres.2024.109245
Pedro Almeida , Ângela Fernandes , Inês Alves , Salomé S. Pinho

Trained Immunity is defined as a biological process normally induced by exogenous or endogenous insults that triggers epigenetic and metabolic reprogramming events associated with long-term adaptation of innate immune cells. This trained phenotype confers enhanced responsiveness to subsequent triggers, resulting in an innate immune “memory” effect. Trained Immunity, in the past decade, has revealed important benefits for host defense and homeostasis, but can also induce potentially harmful outcomes associated with chronic inflammatory disorders or autoimmune diseases. Interestingly, evidence suggest that the “trainers” prompting trained immunity are frequently glycans structures. In fact, the exposure of different types of glycans at the surface of pathogens is a key driver of the training phenotype, leading to the reprogramming of innate immune cells through the recognition of those glycan-triggers by a variety of glycan-binding proteins (GBPs) expressed by the immune cells. β-glucan or mannose-enriched structures in Candida albicans are some of the examples that highlight the potential of glycans in trained immunity, both in homeostasis and in disease. In this review, we will discuss the relevance of glycans exposed by pathogens in establishing key immunological hubs with glycan-recognizing receptors expressed in immune cells, highlighting how this glycan-GBP network can impact trained immunity. Finally, we discuss the power of glycans and GBPs as potential targets in trained immunity, envisioning potential therapeutic applications.

训练免疫被定义为一种生物过程,通常由外源性或内源性损伤诱发,引发与先天性免疫细胞长期适应相关的表观遗传和代谢重编程事件。这种训练有素的表型可增强对后续诱因的反应能力,从而产生先天性免疫 "记忆 "效应。在过去十年中,训练免疫揭示了对宿主防御和平衡的重要益处,但也可能诱发与慢性炎症性疾病或自身免疫性疾病相关的潜在有害结果。有趣的是,有证据表明,促使训练免疫的 "教练 "往往是糖类结构。事实上,病原体表面不同类型聚糖的暴露是训练表型的关键驱动因素,通过免疫细胞表达的各种聚糖结合蛋白(GBPs)对这些聚糖触发器的识别,导致先天性免疫细胞的重编程。白念珠菌中富含β-葡聚糖或甘露糖的结构就是其中的一些例子,它们突出了聚糖在平衡状态和疾病中训练免疫的潜力。在这篇综述中,我们将讨论病原体暴露的聚糖与免疫细胞中表达的聚糖识别受体建立关键免疫中枢的相关性,强调这种聚糖-GBP 网络如何影响训练有素的免疫。最后,我们将讨论聚糖和 GBP 作为训练有素的免疫力潜在靶点的威力,并展望潜在的治疗应用。
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引用次数: 0
Punica granatum L. polysaccharides: A review on extraction, structural characteristics and bioactivities 石榴多糖:提取、结构特征和生物活性综述
IF 2.4 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-20 DOI: 10.1016/j.carres.2024.109246
Bin Zhao , Chunying Zhang , Tianshi Guo , Yan Wei

Punica granatum L., commonly known as pomegranate, is native to Afghanistan and Iran, and today widely cultivated all over the world. Pomegranate polysaccharides are one of the most important bioactive components of P. granatum, which have a wide range of beneficial biological activities, such as anticancer, immunostimulatory, hepatoprotection, anti-psoriasis and antioxidation. Hot water extraction is currently the most commonly used method to isolate pomegranate polysaccharides. The structural characteristics of pomegranate polysaccharides have been extensively investigated through various advanced modern analytical techniques. This review focuses on the extraction, purification, structural characteristics, biological activities and structure-activity relationships of polysaccharides from Punica granatum. The aim of this article is to comprehensively and systematically summarize recent information of polysaccharides from Punica granatum and to serve as a basis for further research and development as therapeutic agents and functional foods.

石榴(Punica granatum L.),俗称石榴,原产于阿富汗和伊朗,如今在世界各地广泛种植。石榴多糖是石榴中最重要的生物活性成分之一,具有抗癌、免疫刺激、保肝、抗牛皮癣和抗氧化等多种有益的生物活性。热水提取是目前分离石榴多糖最常用的方法。通过各种先进的现代分析技术,人们对石榴多糖的结构特征进行了广泛的研究。本综述主要介绍了石榴多糖的提取、纯化、结构特征、生物活性和结构-活性关系。本文旨在全面、系统地总结从石榴中提取多糖的最新信息,为进一步研究和开发石榴多糖作为治疗剂和功能食品奠定基础。
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引用次数: 0
Sugar functionalized coumarin motifs: Synthesis and applications 糖功能化香豆素基团:合成与应用
IF 2.4 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-18 DOI: 10.1016/j.carres.2024.109244
Shubhi Dwivedi, Soumyadip Dey, Abhijit Sau

Sugars are vital biomolecules widely found in nature, playing an indispensable role in a plethora of biological processes. Similarly, coumarins are heterocycles with an effective pharmacophore skeleton, making them crucial in drug design and development. Coupling carbohydrate moieties to the small biologically active molecules creates a vast library of glycoconjugates with impressive structural diversity. The potential of coumarin glycosides is being extensively explored due to their broad spectrum of applications, including antibacterial, anticancer, and anticoagulant properties, etc. This review highlights various chemical methodologies for synthesizing diverse coumarin glycohybrids with distinct linkages and explores their immense biological potential, making a significant contribution to the field of organic synthesis.

糖类是自然界中广泛存在的重要生物大分子,在大量生物过程中发挥着不可或缺的作用。同样,香豆素是具有有效药理骨架的杂环化合物,因此在药物设计和开发中至关重要。将碳水化合物分子与具有生物活性的小分子耦合在一起,可以形成一个庞大的糖共轭物库,其结构多样性令人印象深刻。由于香豆素苷具有广泛的应用前景,包括抗菌、抗癌和抗凝血等特性,其潜力正在被广泛发掘。这篇综述重点介绍了合成具有独特连接的各种香豆素糖杂环的各种化学方法,并探讨了它们巨大的生物潜力,为有机合成领域做出了重要贡献。
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引用次数: 0
Synthesis, characterization and antifungal activity of imidazole chitosan derivatives 咪唑壳聚糖衍生物的合成、表征和抗真菌活性
IF 2.4 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-15 DOI: 10.1016/j.carres.2024.109238
Lulu Wu, Liangxin Fan, Lijun Shi, Caixia Wang, Zhenliang Pan, Cuilian Xu, Guoyu Yang

Five novel imidazole-functionalized chitosan derivatives 3a-3e were synthesized via addition reactions of chitosan with imidazole derivatives. The partial incorporation of imidazole moiety in chitosan were confirmed by FTIR, UV, 1H NMR, XRD, SEM and GPC. Meanwhile, the antifungal activity against three common plant pathogenic fungi: Phytophthora nicotianae (P. nicotianae), Fusarium graminearum (F. graminearum) and Rhizoctonia solani (R. solani), was assayed in vitro at 0.5 and 1.0 mg/mL by hyphal measurement, and the introduction of imidazole group can influence the antifungal activity. At 0.5 mg/mL, 3e inhibited P. nicotianae growth by 42 % and had an inhibitory index against R. solani of 50 %. Derivative 3e was more effective than unmodified chitosan whose antifungal index was 17 % against P. nicotianae and 22 % against R. solani. To our surprise, at 1.0 mg/mL, the inhibition rate of 3e against R. solani can reach 99 %, while the inhibition rate of chitosan is only 38 %. These results indicated that some imidazole chitosan derivatives with enhanced antifungal activities could serve as potential biomaterial for antifungal application.

通过壳聚糖与咪唑衍生物的加成反应,合成了五种新型咪唑官能化壳聚糖衍生物 3a-3e。傅立叶变换红外光谱(FTIR)、紫外光谱(UV)、1H NMR、XRD、扫描电镜(SEM)和气相色谱(GPC)证实了壳聚糖中部分咪唑分子的结合。同时,该化合物对三种常见植物病原真菌具有抗真菌活性:在 0.5 和 1.0 mg/mL 的浓度下,通过菌丝测定法对三种常见植物病原真菌:烟曲霉(Phytophthora nicotianae)、禾谷镰刀菌(Fusarium graminearum)和茄根霉(Rhizoctonia solani)进行了体外试验,结果表明咪唑基团的引入会影响抗真菌活性。在 0.5 毫克/毫升的浓度下,3e 可抑制 42% 的尼古丁虫生长,对索拉尼菌的抑制指数为 50%。衍生物 3e 比未经改性的壳聚糖更有效,后者对烟碱蚁的抗真菌指数为 17%,对索拉尼菌的抗真菌指数为 22%。令我们惊讶的是,在 1.0 毫克/毫升的浓度下,3e 对 R. solani 的抑制率可达 99%,而壳聚糖的抑制率仅为 38%。这些结果表明,一些具有增强抗真菌活性的咪唑壳聚糖衍生物可作为潜在的生物材料用于抗真菌应用。
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引用次数: 0
Production of unsulfated chondroitin and associated chondro-oligosaccharides in recombinant Escherichia coli 在重组大肠杆菌中生产未硫酸化的软骨素和相关软骨寡糖
IF 2.4 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-14 DOI: 10.1016/j.carres.2024.109243
Yanna André , Emeline Richard , Mélanie Leroux , Isabelle Jeacomine , Eric Bayma , Sylvie Armand , Bernard Priem

We designed metabolically engineered non-pathogenic strains of Escherichia coli to produce unsulfated chondroitin with and without chondroitin lyase to produce the chondroitin polymer or its related oligosaccharides. Chondroitin was synthesized using chondroitin synthase KfoC and chondroitin was degraded using Pl35, a chondroitin lyase from Pedobacter heparinus. Pl35 behaved as a true endo-enzyme generating a large panel of oligosaccharides ranging from trimers to 18-mers instead of the di- and tetramers obtained with most chondroitin lyases. Two series of oligosaccharides were characterized, sharing an unsaturated uronic acid (4-deoxy-α-L-threo-hex-4-enepyranosyluronic acid, △UA) residue at their non-reducing end. The major “even-numbered” series was characterized by a terminal reducing N-acetylgalactosaminyl residue. The minor “odd-numbered” series oligosaccharides carried a terminal reducing glucuronic acid residue instead.

Cultures were conducted in fed-batch conditions, and led to the production of up to 10 g L−1 chondroitin or chondroitin oligosaccharides.

All products were purified and fully characterized using NMR and mass spectrometry analyses.

This is the first report of the microbial production of large chondro-oligosaccharides.

我们设计了经过代谢工程改造的非致病性大肠杆菌菌株,可在有软骨素裂解酶和无软骨素裂解酶的情况下产生未硫酸化的软骨素,从而产生软骨素聚合物或其相关的低聚糖。软骨素是用软骨素合成酶 KfoC 合成的,而软骨素是用来自肝磷脂小杆菌的软骨素裂解酶 Pl35 降解的。Pl35 是一种真正的内切酶,能产生大量从三聚体到 18 聚体的寡糖,而不是大多数软骨素裂解酶产生的二聚体和四聚体。有两个系列的寡糖具有相同的特征,它们的非还原末端都有一个不饱和尿酸(4-脱氧-α-L-苏-己-4-烯吡喃糖基尿酸,△UA)残基。主要的 "偶数 "系列以末端的还原性 N-乙酰半乳糖胺残基为特征。所有产品均已纯化,并通过核磁共振和质谱分析进行了全面鉴定。这是微生物生产大型软骨寡糖的首次报道。
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引用次数: 0
Revisiting legume lectins: Structural organization and carbohydrate-binding properties 重新审视豆科凝集素:结构组织和碳水化合物结合特性
IF 2.4 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-13 DOI: 10.1016/j.carres.2024.109241
Vinicius J.S. Osterne, Gilles De Sloover, Els J.M. Van Damme

Legume lectins are a diverse family of carbohydrate-binding proteins that share significant similarities in their primary, secondary, and tertiary structures, yet exhibit remarkable variability in their quaternary structures and carbohydrate-binding specificities. The tertiary structure of legume lectins, characterized by a conserved β-sandwich fold, provides the scaffold for the formation of a carbohydrate-recognition domain (CRD) responsible for ligand binding. The structural basis for the binding is similar between members of the family, with key residues interacting with the sugar through hydrogen bonds, hydrophobic interactions, and van der Waals forces. Variability in substructures and residues within the CRD are responsible for the large array of specificities and enable legume lectins to recognize diverse sugar structures, while maintaining a consistent structural fold. Therefore, legume lectins can be classified into several specificity groups based on their preferred ligands, including mannose/glucose-specific, N-acetyl-d-galactosamine/galactose-specific, N-acetyl-d-glucosamine-specific, l-fucose-specific, and α-2,3 sialic acid-specific lectins. In this context, this review examined the structural aspects and carbohydrate-binding properties of representative legume lectins and their specific ligands in detail. Understanding the structure/binding relationships of lectins continues to provide valuable insights into their biological roles, while also assisting in the potential applications of these proteins in glycobiology, diagnostics, and therapeutics.

豆科凝集素是一个多样化的碳水化合物结合蛋白家族,它们在一级、二级和三级结构上具有显著的相似性,但在四级结构和碳水化合物结合特异性上却表现出显著的差异性。豆科凝集素的三级结构以保守的 β-三明治折叠为特征,为负责配体结合的碳水化合物识别域(CRD)的形成提供了支架。该家族成员之间的结合结构基础相似,关键残基通过氢键、疏水相互作用和范德华力与糖相互作用。CRD内部的亚结构和残基的变异是造成大量特异性的原因,并使豆科凝集素能够识别不同的糖结构,同时保持结构折叠的一致性。因此,豆科凝集素可根据其首选配体分为几类特异性凝集素,包括甘露糖/葡萄糖特异性凝集素、N-乙酰基-半乳糖胺/半乳糖特异性凝集素、N-乙酰基-半乳糖胺特异性凝集素、l-岩藻糖特异性凝集素和α-2,3 水杨酸特异性凝集素。在此背景下,本综述详细研究了代表性豆科凝集素及其特异配体的结构和碳水化合物结合特性。了解凝集素的结构/结合关系将继续为了解它们的生物学作用提供宝贵的见解,同时也有助于这些蛋白质在糖生物学、诊断学和治疗学中的潜在应用。
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引用次数: 0
Putting a cap on the glycome: Dissecting human sialyltransferase functions 为糖分子结构戴上帽子剖析人类糖基转移酶的功能
IF 2.4 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-13 DOI: 10.1016/j.carres.2024.109242
Khadra A. Mohamed, Stijn Kruf, Christian Büll

Human glycans are capped with sialic acids and these nine-carbon sugars mediate many of the biological functions and interactions of glycans. Structurally diverse sialic acid caps mark human cells as self and they form the ligands for the Siglec immune receptors and other glycan-binding proteins. Sialic acids enable host interactions with the human microbiome and many human pathogens utilize sialic acids to infect host cells. Alterations in sialic acid-carrying glycans, sialoglycans, can be found in every major human disease including inflammatory conditions and cancer. Twenty sialyltransferase family members in the Golgi apparatus of human cells transfer sialic acids to distinct glycans and glycoconjugates. Sialyltransferases catalyze specific reactions to form unique sialoglycans or they have shared functions where multiple family members generate the same sialoglycan product. Moreover, some sialyltransferases compete for the same glycan substrate, but create different sialic acid caps. The redundant and competing functions make it difficult to understand the individual roles of the human sialyltransferases in biology and to reveal the specific contributions to pathobiological processes. Recent insights hint towards the existence of biosynthetic rules formed by the individual functions of sialyltransferases, their interactions, and cues from the local Golgi environment that coordinate sialoglycan biosynthesis. In this review, we discuss the current structural and functional understanding of the human sialyltransferase family and we review recent technological advances that enable the dissection of individual sialyltransferase activities.

人类聚糖以硅铝酸为帽盖,这些九碳糖介导了聚糖的许多生物功能和相互作用。结构多样的硫辛酸帽将人类细胞标记为自身细胞,并形成 Siglec 免疫受体和其他聚糖结合蛋白的配体。硅唾液酸能使宿主与人类微生物群相互作用,许多人类病原体利用硅唾液酸感染宿主细胞。在包括炎症和癌症在内的各种重大人类疾病中,都能发现携带硅唾液酸的聚糖(硅聚糖)发生了变化。人体细胞高尔基体中的 20 个硅氨酰转移酶家族成员将硅氨酰转移到不同的聚糖和聚糖共轭物上。硅氨酰转移酶催化特定的反应,形成独特的硅聚糖,或者它们具有共享功能,即多个家族成员生成相同的硅聚糖产物。此外,有些硅氨酰基转移酶会竞争相同的聚糖底物,但生成的硅氨酰基酸帽却不同。冗余和相互竞争的功能使得人们很难理解人类硅氨酰基转移酶在生物学中的作用,也很难揭示它们对病理生物学过程的具体贡献。最近的研究表明,由硅氨酰转移酶的个体功能、它们之间的相互作用以及来自高尔基体局部环境的线索所形成的生物合成规则能够协调硅氨聚糖的生物合成。在这篇综述中,我们讨论了目前对人类硅氨基转移酶家族的结构和功能的理解,并回顾了能够剖析单个硅氨基转移酶活性的最新技术进展。
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引用次数: 0
A concise synthetic approach for isoiminosugars 异亚氨基糖的简明合成方法
IF 2.4 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-10 DOI: 10.1016/j.carres.2024.109239
Martin Thonhofer , André Culum , Tobias Dorn , Roland Fischer , Herwig Prasch , Arnold E. Stütz , Patrick Weber , Tanja M. Wrodnigg

Isoiminosugars are highly biological active substances. Herein, we report a concise synthetic approach for this class of compounds. The key step relies on a stereospecific 1,2-hydride shift in O-2 tosylated glycopyranosides leading to C-2 branched glycofuranosides. This approach enables a 4-step synthesis of powerful β-galactosidase inhibitor 4-epi-isofagomine starting from a simple d-glucopyranoside.

异亚氨基糖是具有高度生物活性的物质。在此,我们报告了这一类化合物的简明合成方法。关键步骤依赖于 O-2 对甲苯磺酰化吡喃糖苷中的 1,2-酸酐的立体特异性转变,从而生成 C-2 支链的糖呋喃糖苷。这种方法可以从简单的 d-吡喃葡萄糖苷开始,通过 4 个步骤合成强效 β-半乳糖苷酶抑制剂 4-表异法哥明。
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引用次数: 0
A review of Lycium barbarum polysaccharides: Extraction, purification, structural-property relationships, and bioactive molecular mechanisms 枸杞多糖综述:枸杞多糖的提取、纯化、结构-性质关系和生物活性分子机制。
IF 2.4 3区 化学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-08-09 DOI: 10.1016/j.carres.2024.109230
Jiao Wang , Shifeng Li , Hua Zhang , Xin Zhang

Lycium barbarum L. is of great significance medicinal and edible plant, which is native to N. & Central China. The extensive health benefits of L. barbarum have earned it great respect in traditional medicine for centuries. Lycium barbarum polysaccharides (LBPs) being recognized as one of the most crucial bioactive compounds found within this plant, with it exhibit a diverse range of pharmacological activities and nutritional functions, thereby generating substantial market demand and broad application prospects. To gain a more comprehensive understanding of LBPs, the review discussed the extraction, purification and structural-property relationships of these compounds. In addition, this review provides a comprehensive summary of the potential mechanisms underlying various biological activities attributed to LBPs, including immune modulation, antioxidant effects, neuroprotection, hepatoprotection, and antitumor properties. The application status and the future research directions of LBPs were subsequently presented. This review will establish a robust foundation and serve as an invaluable resource for future research and advancements in the field of LBPs.

枸杞原产于中国华北和华中地区,是一种重要的药用和食用植物。几个世纪以来,枸杞的广泛保健功效为其赢得了传统医学的极大尊重。枸杞多糖(LBPs)被认为是该植物中最重要的生物活性化合物之一,具有多种药理活性和营养功能,因此市场需求巨大,应用前景广阔。为了更全面地了解枸杞多糖,本综述讨论了这些化合物的提取、纯化和结构-性质关系。此外,本综述还全面总结了枸杞多糖各种生物活性的潜在机制,包括免疫调节、抗氧化作用、神经保护、肝脏保护和抗肿瘤特性。随后介绍了枸杞多糖的应用现状和未来研究方向。这篇综述将为枸杞多糖领域未来的研究和进步奠定坚实的基础,并成为宝贵的资源。
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引用次数: 0
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Carbohydrate Research
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