Data on vegetation carbon storage and soil greenhouse gas (GHG) dynamics in degraded undrained peatlands, and their recovery timeframes, are limited. Additionally, despite their important extent across the tropics, these systems remain unconsidered by the Intergovernmental Panel on Climate Change guidelines for GHG inventories. We modified the existing DeNitrification DeComposition model to simulate undegraded and degraded undrained peat swamp forests in Indonesia and Peru. We simulated partial clearing for agroforestry and burning in Indonesia, and in Peru selective timber harvesting and Mauritia flexuosa palm cutting for fruit harvest. Based on model results, we derived peat onsite CO2, N2O, and CH4 emission factors (EF), assessed timeframes for recovery of vegetation C stocks and peat GHG emissions, and investigated relationships among peat GHG fluxes and biophysical controls. Vegetation carbon stocks recovered 40 years after modeled disturbance in Indonesia, and 80 years post-disturbance in Peru. Simulated degradation increased the peat onsite CO2 EF during the first decade post-disturbance by 557% and 121% in Indonesia and Peru, respectively, with recovery by the second decade post-disturbance at both locations. Degradation also induced an increase in soil N2O emissions in Indonesia (344%) and Peru (323%), with elevations persisting for four decades. As in field observations, simulated disturbances tended to raise CH4 emissions in Indonesia and lower them in Peru, but not substantially. Temporal variations in modeled peat onsite CO2 and N2O EF were linked to degradation-driven changes in soil C:N ratio, and for peat CH4 fluxes to water table and soil moisture dynamics unrelated to disturbance. Our results suggest elevation of peat GHG emissions in these forests up to four decades after anthropogenic disturbances that need accounting in national GHG inventories.
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