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Diversity, composition, and structure of a 1-hectare tree plot in the cloud forest of the Sierra Nevada de Santa Marta, Colombia 哥伦比亚圣玛尔塔内华达山脉云雾林中一块 1 公顷林地的多样性、组成和结构
IF 3 3区 农林科学 Q1 FORESTRY Pub Date : 2024-06-26 DOI: 10.1186/s13595-024-01239-6
Riley P. Fortier, Manuel Bernal-Escobar, Alyssa T. Kullberg, Juan Camilo Osorio Ospina, Yeison Herrera Medina, Lina Aragón, Camilo Palacios Hurtado, Maria Paula Contreras

Key Message

We present data from a new delimited 1-ha forest plot on the Sierra Nevada de Santa Marta in Colombia and describe its tree diversity, composition, and structure. This data can be used in regional analyses and help to refine remote sensing models. Future censuses will provide data on the demographics of rare, endangered, and endemic trees that can be used for their conservation. Dataset access is at https://doi.org/10.15472/ftwol2. Associated metadata are available at https://metadata-afs.nancy.inra.fr/geonetwork/srv/fre/catalog.search#/metadata/a4a7855f-4cb2-459b-a1a2-287bd1e6d587.

关键信息我们展示了哥伦比亚圣玛尔塔内华达山脉新划定的1公顷森林地块的数据,并描述了其树木多样性、组成和结构。这些数据可用于区域分析,并有助于完善遥感模型。未来的普查将提供稀有、濒危和特有树木的人口统计数据,可用于保护这些树木。数据集访问网址:https://doi.org/10.15472/ftwol2。相关元数据请访问 https://metadata-afs.nancy.inra.fr/geonetwork/srv/fre/catalog.search#/metadata/a4a7855f-4cb2-459b-a1a2-287bd1e6d587。
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引用次数: 0
Interannual radial growth response of Douglas-fir (Pseudotsuga menziesii (Mirb.) Franco) to severe droughts: an analysis along a gradient of soil properties and rooting characteristics 花旗松(Pseudotsuga menziesii (Mirb.) Franco)年际径向生长对严重干旱的响应:沿土壤特性和根系特征梯度的分析
IF 3 3区 农林科学 Q1 FORESTRY Pub Date : 2024-06-11 DOI: 10.1186/s13595-024-01240-z
Göran Spangenberg, Reiner Zimmermann, Manfred Küppers, Jürgen Schäffer, Sebastian Hein
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引用次数: 0
There is a need to better take into account forest soils in the planned soil monitoring law of the European Union 有必要在计划制定的欧盟土壤监测法中更好地考虑森林土壤问题
IF 3 3区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-06-04 DOI: 10.1186/s13595-024-01238-7
Nicole Wellbrock, Nathalie Cools, Bruno de Vos, Robert Jandl, Aleksi Lehtonen, Ernst Leitgeb, Raisa Mäkipää, Pavel Pavlenda, Kai Schwärtzel, Vít Šrámek

Key message

A Soil Monitoring Law to improve soil health across all land uses has been proposed by the European Commission. As forests soils have different chemical and physical properties as well as biogeochemical dynamics compared to agricultural land, they also face different challenges in maintaining and restoring soil health. Examples are soil acidification, eutrophication by atmospheric deposition, responses to climate change, and loss of biodiversity. Therefore, we propose forest soil specific health descriptors and thresholds based on experience and knowledge from existing long-term monitoring programs.

关键信息 欧洲委员会提出了一项旨在改善所有土地用途的土壤健康的《土壤监测法》。与农业用地相比,森林土壤具有不同的化学和物理特性以及生物地球化学动态,因此在保持和恢复土壤健康方面也面临着不同的挑战。例如,土壤酸化、大气沉降造成的富营养化、对气候变化的反应以及生物多样性的丧失。因此,我们根据现有长期监测项目的经验和知识,提出了森林土壤特定健康描述指标和阈值。
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引用次数: 0
Nested plot designs used in forest inventory do not accurately capture tree species richness in Southwestern European forests 森林资源清查中使用的嵌套小区设计无法准确捕捉西南欧森林中的树种丰富度
IF 3 3区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-21 DOI: 10.1186/s13595-024-01237-8
Daniel Moreno-Fernández, Isabel Cañellas, Laura Hernández, P. Adame, I. Alberdi
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引用次数: 0
Whole-genome screening for near-diagnostic genetic markers for four western European white oak species identification 为西欧四种白栎鉴定近诊断遗传标记的全基因组筛选
IF 3 3区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-21 DOI: 10.1186/s13595-024-01236-9
Antoine Kremer, A. Delcamp, I. Lesur, S. Wagner, C. Rellstab, E. Guichoux, Thibault Leroy
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引用次数: 0
The role of validation in optimization models for forest management 验证在森林管理优化模型中的作用
IF 3 3区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-08 DOI: 10.1186/s13595-024-01235-w
Jitka Janová, Kai Bödeker, Logan Bingham, Mengistie Kindu, Thomas Knoke

Key message

A validation convention can be established for forest management optimization models. It consists of (1) the delivery of face validation, (2) performing at least one other validation technique, and (3) an explicit discussion of how the optimization model fulfills the stated purpose. Validation by potential users or external experts is of high importance.

Context

Optimization modeling has long assisted the management of forest ecosystems, but the credibility of these models has always been debated with criticisms concerning data quality, failures to include relevant processes in the scope of models, and the inclusion of unrealistic assumptions. Validation is widely considered to be crucial to establishing the credibility of models in general, but how to validate optimization models in particular represents a permanent question generally in operations research.

Aims

We aim to synthesize practical recommendations for the development of validation frameworks in the optimization modeling for forest management.

Methods

We selected a sample of 46 studies devoted to optimization models to be applied in practice, analysed the contents with respect to validation, and provided a critical review.

Results

We (1) clarified the meaning and usage of different validation-related terms that are commonly encountered in the literature, (2) identified and categorised the various methods and frameworks that are used to demonstrate model credibility, and (3) derived organizing principles that helped to suggest improvements in validation frameworks.

Conclusions

A practical validation convention can be established and we suggest the convention to consist of three stages. By providing structured and consistent information about validation processes, researchers in forest management optimization can better demonstrate the credibility of their work to readers and potential users.

关键信息 可以为森林管理优化模型制定一个验证惯例。它包括:(1) 提供表面验证;(2) 至少采用一种其他验证技术;(3) 明确讨论优化模型如何实现既定目的。由潜在用户或外部专家进行验证非常重要。背景优化建模长期以来一直有助于森林生态系统的管理,但这些模型的可信度一直备受争议,有人批评其数据质量不高,没有将相关过程纳入模型范围,以及包含不切实际的假设。验证被广泛认为是建立模型可信度的关键,但如何验证优化模型尤其是运筹学研究中的一个长期问题。方法我们选取了 46 项有关优化模型的研究样本,分析了其中有关验证的内容,并进行了批判性评论。结果我们(1)澄清了文献中常见的不同验证相关术语的含义和用法,(2)确定了用于证明模型可信度的各种方法和框架,并对其进行了分类,(3)得出了有助于建议改进验证框架的组织原则。通过提供有关验证过程的结构化和一致的信息,森林管理优化研究人员可以更好地向读者和潜在用户展示其工作的可信度。
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引用次数: 0
MYB4 is the best candidate transcription factor involved in pinosylvin stilbene biosynthesis in Pinus strobus L. cells by fungal elicitor treatment MYB4 是真菌诱导剂处理松柏细胞时参与松脂松素二苯乙烯生物合成的最佳候选转录因子
IF 3 3区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-05-07 DOI: 10.1186/s13595-024-01234-x
Yi Rae Kim, Young Bum Moon, Han Bin Choi, Jung Yeon Han, Han Suk Choi, Sangrea Shim, Yong Eui Choi

Key message

Dihydropinosylvin monomethyl ether (DPME) and pinosylvin monomethyl ether (PME) are pinosylvin derivatives that show high nematicidal activity against pine wood nematodes (PWNs). Here, we found that fungal elicitor treatment boosted the production of DPME and PME in cultured Pinus strobus L. cells and investigated the transcription factors (TFs) regulating the genes in the pinosylvin stilbenoid biosynthesis pathway.

Context

The discovery of TFs involved in the synthesis of DPME and PME provides an important clue to understanding the pinosylvin stilbenoid synthesis in pine plants.

Aims

We investigated the best fungal elicitor for the production of DPME and PME and the transcriptional activities of genes involved in PME and DPME biosynthesis in P. strobus L. cells after fungal elicitor treatment.

Methods

The content of DPME and PME in P. strobus cells was examined after treatment with fungal elicitors prepared from seven different species of fungi. Moreover, the role of fungal elicitors in the transcriptional activity of genes involved in DPME and PME biosynthesis was investigated by transcriptome analysis using RNA sequencing.

Results

Penicillium chrysogenum Thorn was the most efficient fungal elicitor for the production of DPME and PME in P. strobus cells among the other fungal species. The accumulation of DPME and PME in P. strobus cells after P. chrysogenum elicitor treatment increased 12.7-fold and 23.7-fold, respectively, compared to the control. Transcriptome analysis revealed that fungal elicitor treatment resulted in enhanced transcription of the PAL, 4CL, STS, PMT, and ACC genes, which are involved in PME and DPME biosynthesis. Some transcription factors belonging to the bHLH, MYB, WRKY, and ERF families showed a high transcription rate after fungal elicitor treatment.

Conclusions

We found that the fungal elicitor is a strong inducer of the accumulation of pinosylvin derivatives in the cells of P. strobus. We selected one unigene (c133966_g3_i1 in the MYB family) as the best candidate TF that regulates the DPME and PME biosynthesis in P. strobus by transcriptome analysis.

关键信息二氢丙基松香素单甲醚(DPME)和松香素单甲醚(PME)是松香素衍生物,对松材线虫(PWNs)具有很高的杀线虫活性。背景发现参与 DPME 和 PME 合成的 TFs 为了解松科植物松脂松素类化合物的合成提供了重要线索。目的我们研究了产生 DPME 和 PME 的最佳真菌诱导剂,以及真菌诱导剂处理后松树细胞中参与 PME 和 DPME 生物合成的基因的转录活动。方法用 7 种不同真菌制备的真菌诱导剂处理松树细胞后,检测了细胞中 DPME 和 PME 的含量。此外,通过使用 RNA 测序进行转录组分析,研究了真菌激发剂在参与 DPME 和 PME 生物合成的基因转录活性中的作用。与对照组相比,蛹虫草真菌诱导剂处理后石蒜细胞中 DPME 和 PME 的积累量分别增加了 12.7 倍和 23.7 倍。转录组分析表明,真菌诱导剂处理导致参与 PME 和 DPME 生物合成的 PAL、4CL、STS、PMT 和 ACC 基因转录增强。一些属于 bHLH、MYB、WRKY 和 ERF 家族的转录因子在真菌诱导剂处理后显示出较高的转录率。通过转录组分析,我们选择了一个单基因(MYB 家族中的 c133966_g3_i1)作为调控石蒜 DPME 和 PME 生物合成的最佳候选 TF。
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引用次数: 0
Aggregated database of forest soil chemical properties in the Czech Republic based on surveys from 2000 to 2020 基于 2000 年至 2020 年调查的捷克共和国森林土壤化学特性汇总数据库
IF 3 3区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-17 DOI: 10.1186/s13595-024-01225-y
Kateřina Neudertová Hellebrandová, Věra Fadrhonsová, Vít Šrámek

Key message

The dataset includes data from forest soil surveys conducted in the period 2000–2020. It provides soil and site variables from 8269 locations. Data are aggregated in three basic soil layers: upper organic soil horizon (FH, 6875 locations), upper mineral layer 0–30 cm (M03, 8051 locations) and deeper mineral soil layer 30–80 cm (M38, 2260 locations).

The dataset is available at https://doi.org/10.5281/zenodo.10608814, and access to the metadata is at https://metadata-afs.nancy.inra.fr/geonetwork/srv/fre/catalog.search#/metadata/38f24573-3c0d-469a-a66a-7060ce082155.

关键信息该数据集包括 2000-2020 年期间开展的森林土壤调查数据。它提供了 8269 个地点的土壤和地点变量。数据按三个基本土壤层汇总:上层有机土壤层(FH,6875 个地点)、0-30 厘米上层矿质土壤层(M03,8051 个地点)和 30-80 厘米深层矿质土壤层(M38,2260 个地点)。数据集可在 https://doi.org/10.5281/zenodo.10608814 上获取,元数据可在 https://metadata-afs.nancy.inra.fr/geonetwork/srv/fre/catalog.search#/metadata/38f24573-3c0d-469a-a66a-7060ce082155 上获取。
{"title":"Aggregated database of forest soil chemical properties in the Czech Republic based on surveys from 2000 to 2020","authors":"Kateřina Neudertová Hellebrandová, Věra Fadrhonsová, Vít Šrámek","doi":"10.1186/s13595-024-01225-y","DOIUrl":"https://doi.org/10.1186/s13595-024-01225-y","url":null,"abstract":"<h3 data-test=\"abstract-sub-heading\">Key message</h3><p>The dataset includes data from forest soil surveys conducted in the period 2000–2020. It provides soil and site variables from 8269 locations. Data are aggregated in three basic soil layers: upper organic soil horizon (FH, 6875 locations), upper mineral layer 0–30 cm (M03, 8051 locations) and deeper mineral soil layer 30–80 cm (M38, 2260 locations).</p><p>The dataset is available at https://doi.org/10.5281/zenodo.10608814, and access to the metadata is at https://metadata-afs.nancy.inra.fr/geonetwork/srv/fre/catalog.search#/metadata/38f24573-3c0d-469a-a66a-7060ce082155.</p>","PeriodicalId":7994,"journal":{"name":"Annals of Forest Science","volume":null,"pages":null},"PeriodicalIF":3.0,"publicationDate":"2024-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140614554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Improving monitoring and management methods is of the utmost importance in countries at risk of invasion by the pinewood nematode 在面临松材线虫入侵风险的国家,改进监测和管理方法至关重要
IF 3 3区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-03-27 DOI: 10.1186/s13595-024-01233-y
Christelle Robinet, Annie Raffin, Hervé Jactel, Emmanuel Kersaudy, Philippe Deuffic, Armand Clopeau, Hoël Hotte, Marc Kleinhentz, Cécile Robin, Géraldine Roux, Laure Villate, Philippe Castagnone-Sereno

Key message

The invasive pine wood nematode is a major threat to pine forests worldwide, causing extensive tree mortality. Although scientific knowledge and control measures are continuously improving, important gaps remain. We argue that some key questions, notably related to early detection and pest management, need to be urgently tackled in countries at risk of invasion such as France.

关键信息外来入侵的松材线虫是全球松林的主要威胁,会造成树木大面积死亡。尽管科学知识和控制措施在不断改进,但仍然存在重大差距。我们认为,一些关键问题,特别是与早期检测和害虫管理有关的问题,需要在法国等面临入侵风险的国家紧急解决。
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引用次数: 0
Dynamic height growth models for highly productive pedunculate oak (Quercus robur L.) stands: explicit mapping of site index classification in Serbia 高产截干栎(Quercus robur L.)林分的动态高度增长模型:塞尔维亚场地指数分类的明确制图
IF 3 3区 农林科学 Q1 Agricultural and Biological Sciences Pub Date : 2024-03-26 DOI: 10.1186/s13595-024-01231-0
Marko Kazimirović, Branko Stajić, Nenad Petrović, Janko Ljubičić, Olivera Košanin, Marc Hanewinkel, Dominik Sperlich

Key message

We applied the generalized algebraic difference approach (GADA) to develop dynamic models of height growth for pedunculate oak (Quercus robur L.) in Serbia. According to the dominant heights, the studied region comprises some of Europe’s most productive sites for pedunculate oak. Therein, we have generated a map showing the current site index class of stands. Such a map could be used to enhance forest management and evaluate climate change impacts.

Context

Although sustainable forest management requires reliable prediction of forest site productivity, such indicators are currently unavailable for pedunculate oak sites in Serbia. The site index (SI) curves represent the most commonly used indirect scale for site productivity classification. The dynamic equations derived by the Generalized Algebraic Difference Approach (GADA) are the state-of-the-art approach in growth modeling, but they have not been widely applied for studying the height dynamics of pedunculate oak.

Aims

The main objectives of this study were to develop the first dynamic site index curves for pedunculate oak in Serbia and subsequently to provide stand-level maps with predicted site indices.

Methods

We have tested five flexible polymorphic equations with variable asymptotes derived by the GADA approach. Models were calibrated using artificially established growth trajectories obtained from 3636 detailed temporary sample plots. The selection of the most suitable model was accomplished according to (1) quantitative measures of goodness of fit, (2) the analysis of residual scattering, and (3) the biological plausibility of obtained height growth curves.

Results

After correcting the error terms with a continuous first-order autoregressive structure and conducting a three-stage performance analysis, the GADA dynamic site index model derived from the Hossfeld base equation shows the best overall properties. Insight into the oscillations of relative error suggested that 100 years is the most suitable age for site index referencing. Comparison with existing height growth models revealed greater flexibility and a considerably better representation of the height growth dynamic of pedunculate oak in the studied region. Additionally, we have produced a spatially explicit map showing the expected SI100 for 1907 stands with pedunculate oak within 22 management units.

Conclusion

Dynamic SI-curves based on GADA will serve forest practitioners to update management plans and serve as a reference point for benchmarking the impact of climate change and for developing adaptation strategies. The utilized approach allowed unbiased estimation of SI100 across all age classes so that the resu

关键信息我们应用广义代数差分法(GADA)建立了塞尔维亚截干栎(Quercus robur L.)高度增长的动态模型。根据主要高度,所研究的地区是欧洲栎树产量最高的地区之一。在此基础上,我们绘制了一张地图,显示了当前林分的地点指数等级。虽然可持续森林管理需要可靠的林地生产力预测,但塞尔维亚的截干栎林地目前还没有此类指标。林地指数(SI)曲线是林地生产力分类中最常用的间接尺度。由广义代数差分法(GADA)推导出的动态方程是最先进的生长建模方法,但尚未被广泛应用于研究截干栎的高度动态。利用从 3636 块详细的临时样地中获得的人工建立的生长轨迹对模型进行了校准。结果用连续的一阶自回归结构校正误差项并进行三阶段性能分析后,由霍斯菲尔德基本方程推导出的 GADA 动态场地指数模型显示出最佳的整体特性。对相对误差振荡的洞察表明,100 年是最合适的场地指数参考年限。与现有的高度增长模型进行比较后发现,该模型具有更大的灵活性,能更好地反映研究区域内有梗橡树的高度增长动态。此外,我们还绘制了一张明确的空间地图,显示了 22 个管理单元内 1907 个有梗栎林分的预期 SI100。采用这种方法可以对所有龄级的 SI100 进行无偏估计,从而可以在更大范围内对结果进行映射。这项研究是欧洲对有梗橡树动态模型的第二次应用,也是首次在该物种分布范围内一些最富饶的地点进行应用。
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引用次数: 0
期刊
Annals of Forest Science
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