Pub Date : 2026-12-01Epub Date: 2026-01-27DOI: 10.1080/21645698.2026.2614130
Ali Raza, Yiran Li, Sidra Charagh, Chunli Guo, Mengkai Zhao, Zhangli Hu
Climate change-driven single and combined abiotic stresses pose escalating threats to sustainable, climate-smart agriculture and global food security. Melatonin (MLT, a powerful plant biostimulant) has established noteworthy potential in improving stress tolerance by regulating diverse physiological, biochemical, and molecular responses. Therefore, this review delivers a comprehensive synopsis of MLT-enabled omics responses across genomics, transcriptomics, proteomics, metabolomics, miRNAomics, epigenomics, phenomics, ionomics, and microbiomics levels that collectively regulate plant adaptation to multiple abiotic stresses. We also highlight the crosstalk between these omics layers and the power of integrated multi-omics (panomics) approaches to harness the complex regulatory networks underlying MLT-enabled stress tolerance. Lastly, we argue for translating these omics insights into actionable strategies through advanced genetic engineering and synthetic biology platforms to develop MLT-enabled, stress-smart crop plants.
{"title":"Melatonin-enabled omics: understanding plant responses to single and combined abiotic stresses for climate-smart agriculture.","authors":"Ali Raza, Yiran Li, Sidra Charagh, Chunli Guo, Mengkai Zhao, Zhangli Hu","doi":"10.1080/21645698.2026.2614130","DOIUrl":"10.1080/21645698.2026.2614130","url":null,"abstract":"<p><p>Climate change-driven single and combined abiotic stresses pose escalating threats to sustainable, climate-smart agriculture and global food security. Melatonin (MLT, a powerful plant biostimulant) has established noteworthy potential in improving stress tolerance by regulating diverse physiological, biochemical, and molecular responses. Therefore, this review delivers a comprehensive synopsis of MLT-enabled omics responses across genomics, transcriptomics, proteomics, metabolomics, miRNAomics, epigenomics, phenomics, ionomics, and microbiomics levels that collectively regulate plant adaptation to multiple abiotic stresses. We also highlight the crosstalk between these omics layers and the power of integrated multi-omics (panomics) approaches to harness the complex regulatory networks underlying MLT-enabled stress tolerance. Lastly, we argue for translating these omics insights into actionable strategies through advanced genetic engineering and synthetic biology platforms to develop MLT-enabled, stress-smart crop plants.</p>","PeriodicalId":54282,"journal":{"name":"Gm Crops & Food-Biotechnology in Agriculture and the Food Chain","volume":"17 1","pages":"2614130"},"PeriodicalIF":4.7,"publicationDate":"2026-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12851399/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146055237","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-12-01Epub Date: 2026-02-03DOI: 10.1007/s11571-026-10411-9
Uma Jaishankar, Jagannath H Nirmal, Girish Gidaye
A crucial method for determining a person's mental health and assessing their degree of depression is depression detection. To identify depression through speech or conversation, a number of sophisticated methods and questionnaires have been created. The constraints of the current system are as follows: reduced effectiveness as a result of poor feature selection and extraction, problems with interpretability, and the difficulty of identifying depression in different languages. As a result, the proposed model is presented to offer improved accuracy and efficient performance. While adaptive threshold-based pre-processing (AdaT) is used to eliminate quiet and unnecessary information, the twinned Savitzky-Golay filter (TSaG) is used to minimize noise in the dataset. To turn the signal into an image, a Synchro-Squeezed Adaptive Wavelet Transform Algorithm (SSawT) is employed. The Singular Empirical Decomposition and Sparse Autoencoder (SiFE) model is used to extract linear and deep features. Input's deep, linear, and statistical properties are combined using the Weighted Soft Attention-based Fusion (WSAttF) model. From the fused features, the Chaotic Mud Ring Optimization algorithm (ChMR) chooses the best features. A Dilated Convolutional Neural Network (CNN) based Bidirectional-Long Short Term Memory-Bi-LSTM (DiCBiL) is used to detect different stages of depression, which lowers error rates and increases detection accuracy. The proposed method achieves 93.22% of F1-score, 93.11% precision, 93.12% recall, and 93.31% accuracy on the DAIC-WOZ original test set. During the testing time, two more datasets, namely AVEC 2019 and MELD, are used to validate the proposed performance, attaining an accuracy of 93.91% and 85.34% respectively.
Supplementary information: The online version contains supplementary material available at 10.1007/s11571-026-10411-9.
{"title":"A novel dilated Bi-LSTM framework for depression detection from speech signals through feature fusion.","authors":"Uma Jaishankar, Jagannath H Nirmal, Girish Gidaye","doi":"10.1007/s11571-026-10411-9","DOIUrl":"https://doi.org/10.1007/s11571-026-10411-9","url":null,"abstract":"<p><p>A crucial method for determining a person's mental health and assessing their degree of depression is depression detection. To identify depression through speech or conversation, a number of sophisticated methods and questionnaires have been created. The constraints of the current system are as follows: reduced effectiveness as a result of poor feature selection and extraction, problems with interpretability, and the difficulty of identifying depression in different languages. As a result, the proposed model is presented to offer improved accuracy and efficient performance. While adaptive threshold-based pre-processing (AdaT) is used to eliminate quiet and unnecessary information, the twinned Savitzky-Golay filter (TSaG) is used to minimize noise in the dataset. To turn the signal into an image, a Synchro-Squeezed Adaptive Wavelet Transform Algorithm (SSawT) is employed. The Singular Empirical Decomposition and Sparse Autoencoder (SiFE) model is used to extract linear and deep features. Input's deep, linear, and statistical properties are combined using the Weighted Soft Attention-based Fusion (WSAttF) model. From the fused features, the Chaotic Mud Ring Optimization algorithm (ChMR) chooses the best features. A Dilated Convolutional Neural Network (CNN) based Bidirectional-Long Short Term Memory-Bi-LSTM (DiCBiL) is used to detect different stages of depression, which lowers error rates and increases detection accuracy. The proposed method achieves 93.22% of F1-score, 93.11% precision, 93.12% recall, and 93.31% accuracy on the DAIC-WOZ original test set. During the testing time, two more datasets, namely AVEC 2019 and MELD, are used to validate the proposed performance, attaining an accuracy of 93.91% and 85.34% respectively.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s11571-026-10411-9.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"20 1","pages":"44"},"PeriodicalIF":3.9,"publicationDate":"2026-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12868482/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146123895","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-12-01Epub Date: 2026-01-24DOI: 10.1007/s11571-026-10421-7
Ugur Ince, Omer Faruk Goktas, Ilknur Sercek, Serkan Kirik, Prabal Datta Barua, Mehmet Baygin, Sengul Dogan, Turker Tuncer
To extract information from the brain, the most cost-effective method is electroencephalography (EEG) signal acquisition. Therefore, many researchers have used EEG signals to capture brain activity. EEG signals are complex; hence, computer-aided models-especially machine learning (ML)-are generally employed to interpret them. The primary objective of this research is to demonstrate the feature-extraction capability of a new, novel method. The proposed feature-extraction approach employs a deterministic feature-engineering transformation, designed to restructure multi-strided signal representations through fixed linear operations. The resulting transformation graph exhibits a mountain-like structure; therefore, we term the model MountPat. To evaluate MountPat's performance, we present an explainable feature engineering (XFE) model with four main phases. In the first phase, we extract informative features using MountPat. In the second phase, we select the most informative features using cumulative weighted iterative neighborhood component analysis (CWNCA). In the third phase, we generate classification results by applying t-algorithm-based k-nearest neighbors (tkNN). In the fourth phase, we extract explainable insights from the EEG signals using the Directed Lobish (DLob) explainable artificial intelligence (XAI) method. To demonstrate the general classification ability of the MountPat-based XFE framework, we use six EEG datasets. Under rigorous subject-independent (LOSO) validation, the model achieves 76.36%-98.88% accuracy, demonstrating strong cross-subject generalization. Sample-wise tenfold CV results exceed 89% on all six datasets. Moreover, by deploying the DLob XAI method, we generate interpretable results for each dataset. These results clearly illustrate that the MountPat-based XFE framework is an effective feature-extraction approach for multichannel signal processing.
{"title":"MountPat: investigations on the EEG signals.","authors":"Ugur Ince, Omer Faruk Goktas, Ilknur Sercek, Serkan Kirik, Prabal Datta Barua, Mehmet Baygin, Sengul Dogan, Turker Tuncer","doi":"10.1007/s11571-026-10421-7","DOIUrl":"https://doi.org/10.1007/s11571-026-10421-7","url":null,"abstract":"<p><p>To extract information from the brain, the most cost-effective method is electroencephalography (EEG) signal acquisition. Therefore, many researchers have used EEG signals to capture brain activity. EEG signals are complex; hence, computer-aided models-especially machine learning (ML)-are generally employed to interpret them. The primary objective of this research is to demonstrate the feature-extraction capability of a new, novel method. The proposed feature-extraction approach employs a deterministic feature-engineering transformation, designed to restructure multi-strided signal representations through fixed linear operations. The resulting transformation graph exhibits a mountain-like structure; therefore, we term the model MountPat. To evaluate MountPat's performance, we present an explainable feature engineering (XFE) model with four main phases. In the first phase, we extract informative features using MountPat. In the second phase, we select the most informative features using cumulative weighted iterative neighborhood component analysis (CWNCA). In the third phase, we generate classification results by applying t-algorithm-based k-nearest neighbors (tkNN). In the fourth phase, we extract explainable insights from the EEG signals using the Directed Lobish (DLob) explainable artificial intelligence (XAI) method. To demonstrate the general classification ability of the MountPat-based XFE framework, we use six EEG datasets. Under rigorous subject-independent (LOSO) validation, the model achieves 76.36%-98.88% accuracy, demonstrating strong cross-subject generalization. Sample-wise tenfold CV results exceed 89% on all six datasets. Moreover, by deploying the DLob XAI method, we generate interpretable results for each dataset. These results clearly illustrate that the MountPat-based XFE framework is an effective feature-extraction approach for multichannel signal processing.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"20 1","pages":"53"},"PeriodicalIF":3.9,"publicationDate":"2026-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12921105/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147270022","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Electroencephalography (EEG) can objectively reflect an individual's emotional state. However, due to significant inter-subject differences, existing methods exhibit low generalization performance in emotion recognition across different individuals. Therefore, an EEG emotion classification framework based on deep feature aggregation and multi-source domain adaptation is proposed by us. First, we design a deep feature aggregation module that introduces a novel approach for extracting EEG hemisphere asymmetry features and integrates these features with the frequency and spatiotemporal characteristics of the EEG signals. Additionally, a multi-source domain adaptation strategy is proposed, where multiple independent feature extraction sub-networks are employed to process each domain separately, extracting discriminative features and thereby alleviating the feature shift problem between domains. Then, a domain adaptation strategy is employed to align multiple source domains with the target domain, thereby reducing inter-domain distribution discrepancies and facilitating effective cross-domain knowledge transfer. Simultaneously, to enhance the learning ability of target samples near the decision boundary, pseudo-labels are dynamically generated for the unlabeled samples in the target domain. By leveraging predictions from multiple classifiers, we calculate the average confidence of each pseudo-label group and select the pseudo-label set with the highest confidence as the final label for the target sample. Finally, the mean of the outputs from multiple classifiers is used as the model's final prediction. A comprehensive set of experiments was performed using the publicly available SEED and SEED-IV datasets. The findings indicate that the method we proposed outperforms alternative methods.
{"title":"EEG emotion recognition across subjects based on deep feature aggregation and multi-source domain adaptation.","authors":"Kunqiang Lin, Ying Li, Yiren He, Zihan Jiang, Renjie He, Xianzhe Wang, Hongxu Guo, Lei Guo","doi":"10.1007/s11571-025-10379-y","DOIUrl":"https://doi.org/10.1007/s11571-025-10379-y","url":null,"abstract":"<p><p>Electroencephalography (EEG) can objectively reflect an individual's emotional state. However, due to significant inter-subject differences, existing methods exhibit low generalization performance in emotion recognition across different individuals. Therefore, an EEG emotion classification framework based on deep feature aggregation and multi-source domain adaptation is proposed by us. First, we design a deep feature aggregation module that introduces a novel approach for extracting EEG hemisphere asymmetry features and integrates these features with the frequency and spatiotemporal characteristics of the EEG signals. Additionally, a multi-source domain adaptation strategy is proposed, where multiple independent feature extraction sub-networks are employed to process each domain separately, extracting discriminative features and thereby alleviating the feature shift problem between domains. Then, a domain adaptation strategy is employed to align multiple source domains with the target domain, thereby reducing inter-domain distribution discrepancies and facilitating effective cross-domain knowledge transfer. Simultaneously, to enhance the learning ability of target samples near the decision boundary, pseudo-labels are dynamically generated for the unlabeled samples in the target domain. By leveraging predictions from multiple classifiers, we calculate the average confidence of each pseudo-label group and select the pseudo-label set with the highest confidence as the final label for the target sample. Finally, the mean of the outputs from multiple classifiers is used as the model's final prediction. A comprehensive set of experiments was performed using the publicly available SEED and SEED-IV datasets. The findings indicate that the method we proposed outperforms alternative methods.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"20 1","pages":"8"},"PeriodicalIF":3.9,"publicationDate":"2026-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12644276/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145630828","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Rheumatoid arthritis (RA) is a chronic autoimmune disorder characterized by synovial hyperplasia, inflammatory cell infiltration, and joint destruction. This study investigates the inhibitory effects and metabolic mechanisms of Eucalrobusone C (EC), a novel formyl-phloroglucinol meroterpenoid derivative isolated from Eucalyptus robusta, on Tumour Necrosis Factor-α (TNF-α)-induced rheumatoid arthritis fibroblast-like synoviocytes (RA-FLSs). EC was extracted and purified, with purity confirmed using 1H Nuclear Magnetic Resonance Spectrum (NMR) at 400 MHz. RA-FLSs were exposed to varying concentrations of EC, followed by comprehensive assessment including CCK8 assay for cell proliferation, flow cytometry for cell death, and Transwell assay for migration and invasion capacity. Metabolomic profiling employed Ultra-High Performance Liquid Chromatography-Quadrupole Time-of-Flight Mass Spectrometry (UHPLC-Q-TOF MS), integrated with multivariate statistical analysis and bioinformatics tools to identify metabolic alterations. Results indicated that EC suppressed RA-FLS proliferation in a time- and concentration-dependent manner, significantly enhanced apoptosis, and inhibited cell migration and invasion. Metabolomics analysis detected 898 metabolites, with 112 upregulated and 67 downregulated in EC-treated groups compared to TNF-α-induced controls. Key differentially expressed metabolites were enriched in pathways including ABC transporters, neuroactive ligand-receptor interactions, protein digestion and absorption, and cAMP signalling. These findings suggest that EC exerts anti-rheumatic effects by modulating these metabolic pathways, offering potential as a therapeutic agent for RA management.
类风湿性关节炎(RA)是一种以滑膜增生、炎症细胞浸润和关节破坏为特征的慢性自身免疫性疾病。本研究研究了桉树中分离的新型甲酰基间苯三酚类梅萜类衍生物Eucalrobusone C (EC)对肿瘤坏死因子-α (TNF-α)诱导的类风湿关节炎成纤维细胞样滑膜细胞(RA-FLSs)的抑制作用和代谢机制。提取并纯化EC,使用400 MHz 1H核磁共振谱(NMR)确认纯度。将RA-FLSs暴露于不同浓度的EC中,然后进行综合评估,包括CCK8测定细胞增殖,流式细胞术测定细胞死亡,Transwell测定迁移和侵袭能力。代谢组学分析采用超高效液相色谱-四极杆飞行时间质谱(UHPLC-Q-TOF MS),结合多元统计分析和生物信息学工具来识别代谢变化。结果表明,EC对RA-FLS的增殖呈时间和浓度依赖性,显著增强细胞凋亡,抑制细胞迁移和侵袭。代谢组学分析检测到898种代谢物,与TNF-α-诱导的对照组相比,ec处理组有112种代谢物上调,67种代谢物下调。关键差异表达代谢物在ABC转运蛋白、神经活性配体-受体相互作用、蛋白质消化和吸收以及cAMP信号通路中富集。这些发现表明,EC通过调节这些代谢途径发挥抗风湿作用,具有作为类风湿性关节炎治疗药物的潜力。
{"title":"Novel anti-rheumatic potential of Eucalrobusone C: inhibition of rheumatoid arthritis fibroblast-like synoviocytes and metabolic reprogramming.","authors":"Yaobin Zhu, Ting Chen, Xuebing Feng, Jiewei Luo, Jinshui Chen, Tianmin Wu","doi":"10.1080/21691401.2026.2625669","DOIUrl":"https://doi.org/10.1080/21691401.2026.2625669","url":null,"abstract":"<p><p>Rheumatoid arthritis (RA) is a chronic autoimmune disorder characterized by synovial hyperplasia, inflammatory cell infiltration, and joint destruction. This study investigates the inhibitory effects and metabolic mechanisms of Eucalrobusone C (EC), a novel formyl-phloroglucinol meroterpenoid derivative isolated from <i>Eucalyptus robusta</i>, on Tumour Necrosis Factor-α (TNF-α)-induced rheumatoid arthritis fibroblast-like synoviocytes (RA-FLSs). EC was extracted and purified, with purity confirmed using <sup>1</sup>H Nuclear Magnetic Resonance Spectrum (NMR) at 400 MHz. RA-FLSs were exposed to varying concentrations of EC, followed by comprehensive assessment including CCK8 assay for cell proliferation, flow cytometry for cell death, and Transwell assay for migration and invasion capacity. Metabolomic profiling employed Ultra-High Performance Liquid Chromatography-Quadrupole Time-of-Flight Mass Spectrometry (UHPLC-Q-TOF MS), integrated with multivariate statistical analysis and bioinformatics tools to identify metabolic alterations. Results indicated that EC suppressed RA-FLS proliferation in a time- and concentration-dependent manner, significantly enhanced apoptosis, and inhibited cell migration and invasion. Metabolomics analysis detected 898 metabolites, with 112 upregulated and 67 downregulated in EC-treated groups compared to TNF-α-induced controls. Key differentially expressed metabolites were enriched in pathways including ABC transporters, neuroactive ligand-receptor interactions, protein digestion and absorption, and cAMP signalling. These findings suggest that EC exerts anti-rheumatic effects by modulating these metabolic pathways, offering potential as a therapeutic agent for RA management.</p>","PeriodicalId":8736,"journal":{"name":"Artificial Cells, Nanomedicine, and Biotechnology","volume":"54 1","pages":"232-244"},"PeriodicalIF":4.5,"publicationDate":"2026-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147472447","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-12-01Epub Date: 2026-03-13DOI: 10.1007/s11571-026-10430-6
Yichen Bi, Shuhan Yang, Xianying Xu, Santo Banerjee, Jun Mou
A five-dimensional multi-scroll chaotic system is presented by introducing two memristive elements into a three-dimensional chaotic system. The resulting model generates multi-scroll attractors whose scroll count can be regulated by tuning the memristors' internal parameters. We analyze the equilibria and then quantify the dynamic behaviors using phase portraits, Poincaré sections, bifurcation diagrams, and Lyapunov exponents. Coexisting multi-scroll attractors are observed, and their attraction basins are mapped to visualize the corresponding spatial domains. Parameter-driven adjustment of local amplitude is also demonstrated, enabling flexible modulation of the system output. A DSP-based implementation is further provided to validate the realizability of the proposed design. The study advances memristor-assisted multi-scroll construction and supports engineering-oriented hardware realization of high-dimensional chaotic systems.
{"title":"Multi-scroll generation mechanism, dynamic analysis, and DSP implementation of a dual-memristor-coupled Sprott-C system.","authors":"Yichen Bi, Shuhan Yang, Xianying Xu, Santo Banerjee, Jun Mou","doi":"10.1007/s11571-026-10430-6","DOIUrl":"https://doi.org/10.1007/s11571-026-10430-6","url":null,"abstract":"<p><p>A five-dimensional multi-scroll chaotic system is presented by introducing two memristive elements into a three-dimensional chaotic system. The resulting model generates multi-scroll attractors whose scroll count can be regulated by tuning the memristors' internal parameters. We analyze the equilibria and then quantify the dynamic behaviors using phase portraits, Poincaré sections, bifurcation diagrams, and Lyapunov exponents. Coexisting multi-scroll attractors are observed, and their attraction basins are mapped to visualize the corresponding spatial domains. Parameter-driven adjustment of local amplitude is also demonstrated, enabling flexible modulation of the system output. A DSP-based implementation is further provided to validate the realizability of the proposed design. The study advances memristor-assisted multi-scroll construction and supports engineering-oriented hardware realization of high-dimensional chaotic systems.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"20 1","pages":"63"},"PeriodicalIF":3.9,"publicationDate":"2026-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12988073/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147466737","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-12-01Epub Date: 2026-02-10DOI: 10.1007/s11571-026-10422-6
Soodeh Moallemian, Abolfazl Saghafi, Rutvik Deshpande, Jose M Perez, Miray Budak, Bernadette A Fausto, Fanny M Elahi, Mark A Gluck
Alzheimer's disease (AD) pathology begins years before symptoms appear, and dynamic flexibility of the medial temporal lobe (MTL) may serve as an early functional biomarker. Using data from 656 older adults in the Rutgers Aging and Brain Health Alliance study, we evaluated whether cognitive, genetic, biochemical, and demographic predictors could estimate MTL dynamic flexibility, despite substantial missingness (1,866 missing values; 25.86%). Only 42 participants (6.40%) had complete data; therefore, we compared case deletion with five imputation strategies (MICE, GAIN, MissForest, MIWAE, ReMasker) and eight regression models, assessing prediction accuracy using repeated 5-fold cross-validation. Complete-case analysis yielded limited performance (average [Formula: see text], [Formula: see text]). After imputation, all methods improved accuracy, with MissForest paired with Bagging Trees or Random Forest achieving the lowest prediction error ([Formula: see text]). The greatest improvement in concordance occurred when GAIN was combined with Bagging Trees/Random Forest ([Formula: see text]), representing a 57% gain over the best complete-case model. A Scheirer-Ray-Hare ANOVA confirmed significant differences across imputation strategies ([Formula: see text]). Runtime analyses showed GAIN and MissForest to be both accurate and computationally efficient, while deep generative imputers were slower. These findings demonstrate that robust imputation is essential for maximizing data utility and predictive reliability in high-missingness neuroimaging studies and highlight the potential of ensemble tree models combined with advanced imputation techniques for estimating MTL dynamic flexibility in aging populations.
阿尔茨海默病(AD)的病理在症状出现前几年就开始了,内侧颞叶(MTL)的动态灵活性可能是一种早期功能生物标志物。利用罗格斯大学衰老与脑健康联盟研究中656名老年人的数据,我们评估了认知、遗传、生化和人口统计学预测指标是否可以估计MTL动态灵活性,尽管存在大量缺失(1866个缺失值,25.86%)。只有42名参与者(6.40%)有完整的数据;因此,我们将病例删除与五种imputation策略(MICE, GAIN, MissForest, MIWAE, ReMasker)和八种回归模型进行比较,使用重复的5倍交叉验证来评估预测准确性。完整案例分析产生有限的性能(平均[公式:见文本],[公式:见文本])。估算后,所有方法的准确率都有所提高,其中misforest与Bagging Trees或Random Forest配对的预测误差最低(公式见原文)。当GAIN与Bagging Trees/Random Forest(公式:见文本)结合使用时,一致性得到了最大的改善,比最佳的全案例模型增加了57%。Scheirer-Ray-Hare方差分析证实了不同归因策略之间的显著差异(公式:见原文)。运行时分析表明,GAIN和MissForest既准确又计算效率高,而深度生成输入器则较慢。这些研究结果表明,在高缺失神经影像学研究中,稳健的输入对于最大限度地提高数据效用和预测可靠性至关重要,并突出了集成树模型与先进的输入技术相结合的潜力,以估计老年人群的MTL动态灵活性。
{"title":"Machine learning for missing data imputation in Alzheimer's research: predicting medial temporal lobe dynamic flexibility.","authors":"Soodeh Moallemian, Abolfazl Saghafi, Rutvik Deshpande, Jose M Perez, Miray Budak, Bernadette A Fausto, Fanny M Elahi, Mark A Gluck","doi":"10.1007/s11571-026-10422-6","DOIUrl":"10.1007/s11571-026-10422-6","url":null,"abstract":"<p><p>Alzheimer's disease (AD) pathology begins years before symptoms appear, and dynamic flexibility of the medial temporal lobe (MTL) may serve as an early functional biomarker. Using data from 656 older adults in the Rutgers Aging and Brain Health Alliance study, we evaluated whether cognitive, genetic, biochemical, and demographic predictors could estimate MTL dynamic flexibility, despite substantial missingness (1,866 missing values; 25.86%). Only 42 participants (6.40%) had complete data; therefore, we compared case deletion with five imputation strategies (MICE, GAIN, MissForest, MIWAE, ReMasker) and eight regression models, assessing prediction accuracy using repeated 5-fold cross-validation. Complete-case analysis yielded limited performance (average [Formula: see text], [Formula: see text]). After imputation, all methods improved accuracy, with MissForest paired with Bagging Trees or Random Forest achieving the lowest prediction error ([Formula: see text]). The greatest improvement in concordance occurred when GAIN was combined with Bagging Trees/Random Forest ([Formula: see text]), representing a 57% gain over the best complete-case model. A Scheirer-Ray-Hare ANOVA confirmed significant differences across imputation strategies ([Formula: see text]). Runtime analyses showed GAIN and MissForest to be both accurate and computationally efficient, while deep generative imputers were slower. These findings demonstrate that robust imputation is essential for maximizing data utility and predictive reliability in high-missingness neuroimaging studies and highlight the potential of ensemble tree models combined with advanced imputation techniques for estimating MTL dynamic flexibility in aging populations.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"20 1","pages":"51"},"PeriodicalIF":3.9,"publicationDate":"2026-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12891276/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146178219","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-12-01Epub Date: 2025-11-14DOI: 10.1007/s11571-025-10383-2
Belle Krubitski, Cesar Ceballos, Ty Roachford, Rodrigo F O Pena
Co-transmission, the release of multiple neurotransmitters from a single neuron, is an increasingly recognized phenomenon in the nervous system. A particularly interesting combination of neurotransmitters exhibiting co-transmission is glutamate and GABA, which, when co-released from neurons, demonstrate complex biphasic activity patterns that vary depending on the time or amplitude differences from the excitatory (AMPA) or inhibitory (GABAA) signals. Naively, the outcome signal produced by these differences can be functionally interpreted as simple mechanisms that only add or remove spikes by excitation or inhibition. However, the complex interaction of multiple time-scales and amplitudes may deliver a more complex temporal coding, which is experimentally difficult to access and interpret. In this work, we employ an extensive computational approach to distinguish these postsynaptic co-transmission patterns and how they interact with dendritic filtering and ionic currents. We specifically focus on modeling the summation patterns and their flexible dynamics that arise from the many combinations of temporal and amplitude co-transmission differences. Our results indicate a number of summation patterns that excite, inhibit, and act transiently, which have been previously attributed to the interplay between the intrinsic active and passive electrical properties of the postsynaptic dendritic membrane. Our computational framework provides an insight into the complex interplay that arises between co-transmission and dendritic filtering, allowing for a mechanistic understanding underlying the integration and processing of co-transmitted signals in neural circuits.
Supplementary information: The online version contains supplementary material available at 10.1007/s11571-025-10383-2.
{"title":"Synaptic summation shapes information transfer in GABA-glutamate co-transmission.","authors":"Belle Krubitski, Cesar Ceballos, Ty Roachford, Rodrigo F O Pena","doi":"10.1007/s11571-025-10383-2","DOIUrl":"https://doi.org/10.1007/s11571-025-10383-2","url":null,"abstract":"<p><p>Co-transmission, the release of multiple neurotransmitters from a single neuron, is an increasingly recognized phenomenon in the nervous system. A particularly interesting combination of neurotransmitters exhibiting co-transmission is glutamate and GABA, which, when co-released from neurons, demonstrate complex biphasic activity patterns that vary depending on the time or amplitude differences from the excitatory (AMPA) or inhibitory (GABA<sub>A</sub>) signals. Naively, the outcome signal produced by these differences can be functionally interpreted as simple mechanisms that only add or remove spikes by excitation or inhibition. However, the complex interaction of multiple time-scales and amplitudes may deliver a more complex temporal coding, which is experimentally difficult to access and interpret. In this work, we employ an extensive computational approach to distinguish these postsynaptic co-transmission patterns and how they interact with dendritic filtering and ionic currents. We specifically focus on modeling the summation patterns and their flexible dynamics that arise from the many combinations of temporal and amplitude co-transmission differences. Our results indicate a number of summation patterns that excite, inhibit, and act transiently, which have been previously attributed to the interplay between the intrinsic active and passive electrical properties of the postsynaptic dendritic membrane. Our computational framework provides an insight into the complex interplay that arises between co-transmission and dendritic filtering, allowing for a mechanistic understanding underlying the integration and processing of co-transmitted signals in neural circuits.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s11571-025-10383-2.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"20 1","pages":"6"},"PeriodicalIF":3.9,"publicationDate":"2026-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12618799/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145539075","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
As healthcare text data becomes increasingly complex, it is vital for sentiment analysis to capture local patterns and global contextual dependencies. In this paper, we propose a hybrid Swin Transformer-BiLSTM-Spatial MLP (Swin-MLP) model that leverages hierarchical attention, shifted-window mechanisms, and spatial MLP layers to extract features from domain-specific healthcare text better. The framework is tested on domain-specific datasets for Drug Review and Medical Text, and performance is assessed against baseline models (BERT, LSTM, and GRU). Our findings show that the Swin-MLP model performs significantly better overall, achieving superior metrics (accuracy, precision, recall, F1-score, and AUC) and improving mean accuracy by 1-2% over BERT. Statistical tests to assess significance (McNemar's test and paired t-test) indicate that improvements are statistically significant (p < 0.05), suggesting the efficacy of the architectural innovations. The results' implications indicate that the model is robust, efficiently converges to classification, and is potentially helpful for a wide range of domain-specific sentiment analyses in healthcare. We will examine future research directions into exploring lightweight attention mechanisms, cross-domain multimodal sentiment analysis, federated learning to protect privacy, and hardware implications for rapid training and inference.
{"title":"Leveraging Swin Transformer for advanced sentiment analysis: a new paradigm.","authors":"Gaurav Kumar Rajput, Saurabh Kumar Srivastava, Namit Gupta","doi":"10.1007/s11571-025-10378-z","DOIUrl":"https://doi.org/10.1007/s11571-025-10378-z","url":null,"abstract":"<p><p>As healthcare text data becomes increasingly complex, it is vital for sentiment analysis to capture local patterns and global contextual dependencies. In this paper, we propose a hybrid Swin Transformer-BiLSTM-Spatial MLP (Swin-MLP) model that leverages hierarchical attention, shifted-window mechanisms, and spatial MLP layers to extract features from domain-specific healthcare text better. The framework is tested on domain-specific datasets for Drug Review and Medical Text, and performance is assessed against baseline models (BERT, LSTM, and GRU). Our findings show that the Swin-MLP model performs significantly better overall, achieving superior metrics (accuracy, precision, recall, F1-score, and AUC) and improving mean accuracy by 1-2% over BERT. Statistical tests to assess significance (McNemar's test and paired t-test) indicate that improvements are statistically significant (p < 0.05), suggesting the efficacy of the architectural innovations. The results' implications indicate that the model is robust, efficiently converges to classification, and is potentially helpful for a wide range of domain-specific sentiment analyses in healthcare. We will examine future research directions into exploring lightweight attention mechanisms, cross-domain multimodal sentiment analysis, federated learning to protect privacy, and hardware implications for rapid training and inference.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"20 1","pages":"13"},"PeriodicalIF":3.9,"publicationDate":"2026-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12660549/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145647175","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-12-01Epub Date: 2026-01-28DOI: 10.1080/21691401.2026.2618967
Belal Almajali, Giriraja Kv, Gowthamarajan Kuppusamy, Md Zeyaullah, Nayudu Teja, Veera Venkata Satyanarana Reddy Karri, Mohamed Rahamathulla, Muhammad Ali Abdullah Almoyad, Khursheed Muzammil, Mohammed Muqtader Ahmed, Ismail Pasha
An open-level, single-arm, phase-4 clinical trial was carried out to assess the safety and potential benefits of micronized coated ferric pyrophosphate (MEFP) in patients with iron deficiency anaemia (IDA). For 12 weeks, 60 patients between the ages of 18 and 60 with moderate IDA were randomly received MEFP by PO daily. The efficacy endpoints as haemoglobin levels, mean corpuscular haemoglobin (MCH), mean cell haemoglobin concentration (MCHC), packed cell volume (PCV), red blood cell count (RBC), serum ferritin and transferrin saturation (%) were measured. Adverse event reports and physical examinations were performed as a measure of safety assessment. The results revealed that haemoglobin, MCV, MCHC, serum ferritin, transferrin saturation (%), PCV and RBC increased significantly from baseline. Fewer occurrences were observed in a few patients, and their adverse events were minimal. There was no adverse effect on liver or renal functions. Few minor improvements were noticed at the completion of the study. In conclusion, MEFP appears to be effective in IDA and well tolerated, with a favourable safety profile. MEFP is an effective, safe therapeutic alternative in IDA subjects for increasing haemoglobin concentration and iron stores along with improvement of symptoms related to anaemia.
{"title":"Assessment of the safety and efficacy of micronized encapsulated ferric pyrophosphate in patients with iron deficiency anaemia: a phase-IV open-label clinical study.","authors":"Belal Almajali, Giriraja Kv, Gowthamarajan Kuppusamy, Md Zeyaullah, Nayudu Teja, Veera Venkata Satyanarana Reddy Karri, Mohamed Rahamathulla, Muhammad Ali Abdullah Almoyad, Khursheed Muzammil, Mohammed Muqtader Ahmed, Ismail Pasha","doi":"10.1080/21691401.2026.2618967","DOIUrl":"https://doi.org/10.1080/21691401.2026.2618967","url":null,"abstract":"<p><p>An open-level, single-arm, phase-4 clinical trial was carried out to assess the safety and potential benefits of micronized coated ferric pyrophosphate (MEFP) in patients with iron deficiency anaemia (IDA). For 12 weeks, 60 patients between the ages of 18 and 60 with moderate IDA were randomly received MEFP by PO daily. The efficacy endpoints as haemoglobin levels, mean corpuscular haemoglobin (MCH), mean cell haemoglobin concentration (MCHC), packed cell volume (PCV), red blood cell count (RBC), serum ferritin and transferrin saturation (%) were measured. Adverse event reports and physical examinations were performed as a measure of safety assessment. The results revealed that haemoglobin, MCV, MCHC, serum ferritin, transferrin saturation (%), PCV and RBC increased significantly from baseline. Fewer occurrences were observed in a few patients, and their adverse events were minimal. There was no adverse effect on liver or renal functions. Few minor improvements were noticed at the completion of the study. In conclusion, MEFP appears to be effective in IDA and well tolerated, with a favourable safety profile. MEFP is an effective, safe therapeutic alternative in IDA subjects for increasing haemoglobin concentration and iron stores along with improvement of symptoms related to anaemia.</p>","PeriodicalId":8736,"journal":{"name":"Artificial Cells, Nanomedicine, and Biotechnology","volume":"54 1","pages":"150-158"},"PeriodicalIF":4.5,"publicationDate":"2026-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146096805","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}