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Multi-view domain adaption based multi-scale convolutional conditional invertible discriminator for cross-subject electroencephalogram emotion recognition. 基于多视域自适应的多尺度卷积条件可逆判别器在跨主体脑电图情绪识别中的应用。
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-13 DOI: 10.1007/s11571-024-10193-y
Sivasaravana Babu S, Prabhu Venkatesan, Parthasarathy Velusamy, Saravana Kumar Ganesan

Cross subject Electroencephalogram (EEG) emotion recognition refers to the process of utilizing electroencephalogram signals to recognize and classify emotions across different individuals. It tracks neural electrical patterns, and by analyzing these signals, it's possible to infer a person's emotional state. The objective of cross-subject recognition is to create models or algorithms that can reliably detect emotions in both the same person and several other people. Accurately predicting emotions poses challenges due to dynamic traits. Models struggle with feature extraction, convergence, and negative transfer issues, hindering cross subject emotion recognition. The proposed model employs thorough signal preprocessing, Short-Time Geodesic Flow Kernel Fourier Transform (STGFKFT) for feature extraction, enhancing classifiers' accuracy. Multi-view sheaf attention improves feature discrimination, while the Multi-Scale Convolutional Conditional Invertible Puma Discriminator Neural Network (MSCCIPDNN) framework ensures generalization. Efficient computational techniques and the puma optimization algorithm enhance model robustness and convergence. The suggested framework demonstrates extraordinary success with high accuracy, of 99.5%, 99% and 99.50% for SEED, SEED-IV, and DEAP dataset sequentially. By incorporating these techniques, the proposed method aims to precisely recognition emotions, and accurately captures the features, thereby overcoming the limitations of existing methodologies.

跨主体脑电图情绪识别是指利用脑电图信号对不同个体的情绪进行识别和分类的过程。它可以追踪神经电模式,通过分析这些信号,可以推断出一个人的情绪状态。跨主体识别的目标是创建能够可靠地检测同一个人和其他几个人的情绪的模型或算法。由于动态特征,准确预测情绪带来了挑战。模型与特征提取、收敛和负迁移问题作斗争,阻碍了跨主题情感识别。该模型采用全面的信号预处理,利用短时测地流核傅里叶变换(STGFKFT)进行特征提取,提高了分类器的准确率。多视束关注提高了特征识别能力,而多尺度卷积条件可逆美洲虎鉴别神经网络(MSCCIPDNN)框架保证了泛化能力。高效的计算技术和美洲豹优化算法增强了模型的鲁棒性和收敛性。该框架在SEED、SEED- iv和DEAP数据集上的准确率分别为99.5%、99%和99.50%,取得了非凡的成功。通过整合这些技术,该方法旨在精确识别情绪,并准确捕获特征,从而克服现有方法的局限性。
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引用次数: 0
3T dilated inception network for enhanced autism spectrum disorder diagnosis using resting-state fMRI data. 利用静息状态fMRI数据增强自闭症谱系障碍诊断的3T扩展初始网络。
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-13 DOI: 10.1007/s11571-024-10202-0
V Kavitha, R Siva

Autism spectrum disorder (ASD) is one of the complicated neurodevelopmental disorders that impacts the daily functioning and social interactions of individuals. It includes diverse symptoms and severity levels, making it challenging to diagnose and treat efficiently. Various deep learning (DL) based methods have been developed for diagnosing ASD, which rely heavily on behavioral assessment. However, existing techniques have suffered from poor diagnostic outcomes, higher computational complexity, and overfitting issues. To address these challenges, this research work introduces an innovative framework called 3T Dilated Inception Network (3T-DINet) for effective ASD diagnosis using resting-state functional Magnetic Resonance Imaging (rs-fMRI) images. The proposed 3T-DINet technique designs a 3T dilated inception module that incorporates dilated convolutions along with the inception module, allowing it to extract multi-scale features from brain connectivity patterns. The 3T dilated inception module uses three distinct dilation rates (low, medium, and high) in parallel to determine local, mid-level, and global features from the brain. In addition, the proposed approach implements Residual networks (ResNet) to avoid the vanishing gradient problem and enhance the feature extraction ability. The model is further optimized using a Crossover-based Black Widow Optimization (CBWO) algorithm that fine-tunes the hyperparameters thereby enhancing the overall performance of the model. Further, the performance of the 3T-DINet model is evaluated using the five ASD datasets with distinct evaluation parameters. The proposed 3T-DINet technique achieved superior diagnosis results compared to recent previous works. From this simulation validation, it's clear that the 3T-DINet provides an excellent contribution to early ASD diagnosis and enhances patient treatment outcomes.

自闭症谱系障碍(ASD)是一种复杂的神经发育障碍,影响个体的日常功能和社会交往。它包括多种症状和严重程度,使其难以有效诊断和治疗。各种基于深度学习(DL)的诊断ASD的方法已经开发出来,这些方法在很大程度上依赖于行为评估。然而,现有技术存在诊断结果差、计算复杂性高和过拟合问题。为了应对这些挑战,本研究工作引入了一种名为3T扩张初始网络(3T- dinet)的创新框架,用于使用静息状态功能磁共振成像(rs-fMRI)图像有效诊断ASD。提出的3T- dinet技术设计了一个3T扩展初始模块,该模块将扩展卷积与初始模块结合在一起,使其能够从大脑连接模式中提取多尺度特征。3T扩张初始模块使用三种不同的扩张速率(低、中、高)来并行确定大脑的局部、中度和全局特征。此外,该方法采用残差网络(ResNet),避免了梯度消失问题,增强了特征提取能力。使用基于交叉的黑寡妇优化(CBWO)算法进一步优化模型,微调超参数,从而提高模型的整体性能。此外,使用具有不同评估参数的五个ASD数据集对3T-DINet模型的性能进行了评估。本文提出的3T-DINet技术与以往的工作相比,取得了更好的诊断结果。从这个模拟验证中,很明显,3T-DINet为早期ASD诊断和提高患者治疗效果提供了出色的贡献。
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引用次数: 0
Implementation of memristive emotion associative learning circuit. 记忆性情感联想学习电路的实现。
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-09 DOI: 10.1007/s11571-024-10211-z
Zhangzhi Zhou, Mi Lin, Xuanxuan Zhou, Chong Zhang

Psychological studies have demonstrated that the music can affect memory by triggering different emotions. Building on the relationships among music, emotion, and memory, a memristor-based emotion associative learning circuit is designed by utilizing the nonlinear and non-volatile characteristics of memristors, which includes a music judgment module, three emotion generation modules, three emotional homeostasis modules, and a memory module to implement functions such as learning, second learning, forgetting, emotion generation, and emotional homeostasis. The experimental results indicate that the proposed circuit can simulate the learning and forgetting processes of human under different music circumstances, demonstrate the feasibility of memristors in biomimetic circuits, verify the impact of music on memory, and provide a foundation for in-depth research and application development of the interaction mechanism between emotion and memory.

心理学研究表明,音乐可以通过引发不同的情绪来影响记忆。基于音乐、情感和记忆之间的关系,利用记忆电阻器的非线性和非易失性,设计了基于记忆电阻器的情感联想学习电路,该电路包括一个音乐判断模块、三个情感产生模块、三个情感稳态模块和一个记忆模块,实现了学习、二次学习、遗忘、情感产生和情感稳态等功能。实验结果表明,所设计的电路能够模拟人类在不同音乐环境下的学习和遗忘过程,验证了记忆电阻器在仿生电路中的可行性,验证了音乐对记忆的影响,为情感与记忆相互作用机制的深入研究和应用开发提供了基础。
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引用次数: 0
Optimal time-frequency localized wavelet filters for identification of Alzheimer's disease from EEG signals. 基于时频局部化小波滤波的脑电信号阿尔茨海默病识别。
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-09 DOI: 10.1007/s11571-024-10198-7
Digambar V Puri, Jayanand P Gawande, Pramod H Kachare, Ibrahim Al-Shourbaji

Alzheimer's disease (AD) is a chronic disability that occurs due to the loss of neurons. The traditional methods to detect AD involve questionnaires and expensive neuro-imaging tests, which are time-consuming, subjective, and inconvenient to the target population. To overcome these limitations, Electroencephalogram (EEG) based methods have been developed to classify AD patients from normal controlled (NC) and mild cognitive impairment (MCI) subjects. Most of the EEG-based methods involved entropy-based feature extraction and discrete wavelet transform. However, the existing AD classification methods failed to provide promising classification accuracy. Here, we proposed a wavelet-machine learning (ML) framework to detect AD using a newly designed biorthogonal filter bank by optimization of frequency and time localization of triplet halfband filter banks (OTFL-THFB). The OTFL-THFB decomposes EEG signals into various EEG sub- bands. Hjorth Parameters (HP) and Higuchi's Fractal Dimension (HFD) have been investigated to extract features from each EEG subband. Subsequently, ML models are trained and tested using different features such as OTFL-THFB with HFD, OTFL-THFB with HP, and OTFL-THFB with HFD and HP used for detecting AD with 10-fold cross-validation. This method was applied to two publicly available datasets. Our model achieved an accuracy of 98.91 % for AD versus NC and 98.65 % for AD versus MCI versus NC using the least square support vector machine. Results indicate that this framework surpassed existing state-of-the-art techniques for classifying AD from NC.

阿尔茨海默病(AD)是一种由于神经元丧失而发生的慢性残疾。传统的阿尔茨海默病检测方法包括问卷调查和昂贵的神经影像学检查,费时、主观,而且对目标人群不方便。为了克服这些局限性,基于脑电图(EEG)的方法已经被开发出来,将AD患者从正常控制(NC)和轻度认知障碍(MCI)受试者中进行分类。大多数基于脑电图的方法涉及基于熵的特征提取和离散小波变换。然而,现有的AD分类方法并不能提供很好的分类精度。在这里,我们提出了一个小波-机器学习(ML)框架,通过优化三重半带滤波器组(OTFL-THFB)的频率和时间定位,使用新设计的双正交滤波器组来检测AD。OTFL-THFB将脑电信号分解成不同的脑电信号子带。利用Hjorth参数(Hjorth Parameters, HP)和Higuchi分形维数(Higuchi’s Fractal Dimension, HFD)提取脑电信号各子带的特征。随后,使用不同的特征对ML模型进行训练和测试,例如OTFL-THFB与HFD, OTFL-THFB与HP,以及OTFL-THFB与HFD和HP用于检测AD,并进行10倍交叉验证。该方法应用于两个公开可用的数据集。使用最小二乘支持向量机,我们的模型对AD与NC的准确率为98.91%,对AD与MCI与NC的准确率为98.65%。结果表明,该框架超越了现有的最先进的AD和NC分类技术。
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引用次数: 0
The phonation test can distinguish the patient with Parkinson's disease via Bayes inference. 语音测试可以通过贝叶斯推理来区分帕金森病患者。
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-09 DOI: 10.1007/s11571-024-10194-x
Yifeng Liu, Hongjie Gong, Meimei Mouse, Fan Xu, Xianwei Zou, Jingsheng Yang, Qingping Xue, Min Huang

Parkinson's disease (PD) is a neurodegenerative disease with various clinical manifestations caused by multiple risk factors. However, the effect of different factors and relationships between different features related to PD and the extent of those factors leading to the incidence of PD remains unclear. we employed Bayesian network to construct a prediction model. The prediction system was trained on the data of 35 patients and 26 controls. The structure learning and parameter learning of Bayesian Network was completed through the tree-augmented network (TAN) and Netica software, respectively. We employed four Bayesian Networks in terms of the syllable, including monosyllables, disyllables, multisyllables and unsegmented syllables. The area under the curve (AUC) of monosyllabic, disyllabic, multisyllabic, and unsegmented-syllable models were 0.95, 0.83, 0.80 and 0.84, respectively. In the monosyllabic tests, the best predictor of PD was duration, the posterior probability of which was 92.70%. Meanwhile, minimum f0 (61.60%) predicted best in the disyllabic tests and the variables that predicted best in multisyllables and unsegmented syllables were end f0 (59.40%) and maximum f0 (58.40%). In the cross-sectional comparison, the prediction effect of each variable in the monosyllabic tests was generally higher than that of other test groups. The monosyllabic models had the highest predicted performance of PD. Among acoustic parameters, duration was the strongest feature in predicting the prevalence of PD in monosyllabic tests. We believe that this network methodology will be a useful tool for the clinical prediction of Parkinson's disease.

Supplementary information: The online version contains supplementary material available at 10.1007/s11571-024-10194-x.

帕金森病(Parkinson's disease,PD)是一种神经退行性疾病,其临床表现多种多样,由多种危险因素引起。然而,不同因素的影响以及与帕金森病相关的不同特征之间的关系以及这些因素导致帕金森病发病率的程度仍不清楚。预测系统在35名患者和26名对照组的数据上进行了训练。贝叶斯网络的结构学习和参数学习分别通过树增强网络(TAN)和Netica软件完成。在音节方面,我们采用了四种贝叶斯网络,包括单音节、双音节、多音节和未分段音节。单音节、双音节、多音节和未分节音节模型的曲线下面积(AUC)分别为 0.95、0.83、0.80 和 0.84。在单音节测试中,预测 PD 的最佳指标是持续时间,其后验概率为 92.70%。同时,在双音节测试中,最小 f0(61.60%)的预测效果最好,而在多音节和未分节音节中,预测效果最好的变量是尾音 f0(59.40%)和最大 f0(58.40%)。在横向比较中,各变量在单音节测试中的预测效果普遍高于其他测试组。单音节模型对 PD 的预测效果最高。在声学参数中,持续时间是预测单音节测试中咽喉病患病率的最强特征。我们相信,这种网络方法将成为帕金森病临床预测的有用工具:在线版本包含补充材料,可在 10.1007/s11571-024-10194-x 上获取。
{"title":"The phonation test can distinguish the patient with Parkinson's disease via Bayes inference.","authors":"Yifeng Liu, Hongjie Gong, Meimei Mouse, Fan Xu, Xianwei Zou, Jingsheng Yang, Qingping Xue, Min Huang","doi":"10.1007/s11571-024-10194-x","DOIUrl":"10.1007/s11571-024-10194-x","url":null,"abstract":"<p><p>Parkinson's disease (PD) is a neurodegenerative disease with various clinical manifestations caused by multiple risk factors. However, the effect of different factors and relationships between different features related to PD and the extent of those factors leading to the incidence of PD remains unclear. we employed Bayesian network to construct a prediction model. The prediction system was trained on the data of 35 patients and 26 controls. The structure learning and parameter learning of Bayesian Network was completed through the tree-augmented network (TAN) and Netica software, respectively. We employed four Bayesian Networks in terms of the syllable, including monosyllables, disyllables, multisyllables and unsegmented syllables. The area under the curve (AUC) of monosyllabic, disyllabic, multisyllabic, and unsegmented-syllable models were 0.95, 0.83, 0.80 and 0.84, respectively. In the monosyllabic tests, the best predictor of PD was duration, the posterior probability of which was 92.70%. Meanwhile, minimum f0 (61.60%) predicted best in the disyllabic tests and the variables that predicted best in multisyllables and unsegmented syllables were end f0 (59.40%) and maximum f0 (58.40%). In the cross-sectional comparison, the prediction effect of each variable in the monosyllabic tests was generally higher than that of other test groups. The monosyllabic models had the highest predicted performance of PD. Among acoustic parameters, duration was the strongest feature in predicting the prevalence of PD in monosyllabic tests. We believe that this network methodology will be a useful tool for the clinical prediction of Parkinson's disease.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s11571-024-10194-x.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"18"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11717751/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142969961","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Neuroenhancement by repetitive transcranial magnetic stimulation (rTMS) on DLPFC in healthy adults.
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-24 DOI: 10.1007/s11571-024-10195-w
Elias Ebrahimzadeh, Seyyed Mostafa Sadjadi, Mostafa Asgarinejad, Amin Dehghani, Lila Rajabion, Hamid Soltanian-Zadeh

The term "neuroenhancement" describes the enhancement of cognitive function associated with deficiencies resulting from a specific condition. Nevertheless, there is currently no agreed-upon definition for the term "neuroenhancement", and its meaning can change based on the specific research being discussed. As humans, our continual pursuit of expanding our capabilities, encompassing both cognitive and motor skills, has led us to explore various tools. Among these, repetitive Transcranial Magnetic Stimulation (rTMS) stands out, yet its potential remains underestimated. Historically, rTMS was predominantly employed in studies focused on rehabilitation objectives. A small amount of research has examined its use on healthy subjects with the goal of improving cognitive abilities like risk-seeking, working memory, attention, cognitive control, learning, computing speed, and decision-making. It appears that the insights gained in this domain largely stem from indirect outcomes of rehabilitation research. This review aims to scrutinize these studies, assessing the effectiveness of rTMS in enhancing cognitive skills in healthy subjects. Given that the dorsolateral prefrontal cortex (DLPFC) has become a popular focus for rTMS in treating psychiatric disorders, corresponding anatomically to Brodmann areas 9 and 46, and considering the documented success of rTMS stimulation on the DLPFC for cognitive improvement, our focus in this review article centers on the DLPFC as the focal point and region of interest. Additionally, recognizing the significance of theta burst magnetic stimulation protocols (TBS) in mimicking the natural firing patterns of the brain to modulate excitability in specific cortical areas with precision, we have incorporated Theta Burst Stimulation (TBS) wave patterns. This inclusion, mirroring brain patterns, is intended to enhance the efficacy of the rTMS method. To ascertain if brain magnetic stimulation consistently improves cognition, a thorough meta-analysis of the existing literature has been conducted. The findings indicate that, after excluding outlier studies, rTMS may improve cognition when compared to appropriate control circumstances. However, there is also a considerable degree of variation among the researches. The navigation strategy used to reach the stimulation site and the stimulation location are important factors that contribute to the variation between studies. The results of this study can provide professional athletes, firefighters, bodyguards, and therapists-among others in high-risk professions-with insightful information that can help them perform better on the job.

{"title":"Neuroenhancement by repetitive transcranial magnetic stimulation (rTMS) on DLPFC in healthy adults.","authors":"Elias Ebrahimzadeh, Seyyed Mostafa Sadjadi, Mostafa Asgarinejad, Amin Dehghani, Lila Rajabion, Hamid Soltanian-Zadeh","doi":"10.1007/s11571-024-10195-w","DOIUrl":"10.1007/s11571-024-10195-w","url":null,"abstract":"<p><p>The term \"neuroenhancement\" describes the enhancement of cognitive function associated with deficiencies resulting from a specific condition. Nevertheless, there is currently no agreed-upon definition for the term \"neuroenhancement\", and its meaning can change based on the specific research being discussed. As humans, our continual pursuit of expanding our capabilities, encompassing both cognitive and motor skills, has led us to explore various tools. Among these, repetitive Transcranial Magnetic Stimulation (rTMS) stands out, yet its potential remains underestimated. Historically, rTMS was predominantly employed in studies focused on rehabilitation objectives. A small amount of research has examined its use on healthy subjects with the goal of improving cognitive abilities like risk-seeking, working memory, attention, cognitive control, learning, computing speed, and decision-making. It appears that the insights gained in this domain largely stem from indirect outcomes of rehabilitation research. This review aims to scrutinize these studies, assessing the effectiveness of rTMS in enhancing cognitive skills in healthy subjects. Given that the dorsolateral prefrontal cortex (DLPFC) has become a popular focus for rTMS in treating psychiatric disorders, corresponding anatomically to Brodmann areas 9 and 46, and considering the documented success of rTMS stimulation on the DLPFC for cognitive improvement, our focus in this review article centers on the DLPFC as the focal point and region of interest. Additionally, recognizing the significance of theta burst magnetic stimulation protocols (TBS) in mimicking the natural firing patterns of the brain to modulate excitability in specific cortical areas with precision, we have incorporated Theta Burst Stimulation (TBS) wave patterns. This inclusion, mirroring brain patterns, is intended to enhance the efficacy of the rTMS method. To ascertain if brain magnetic stimulation consistently improves cognition, a thorough meta-analysis of the existing literature has been conducted. The findings indicate that, after excluding outlier studies, rTMS may improve cognition when compared to appropriate control circumstances. However, there is also a considerable degree of variation among the researches. The navigation strategy used to reach the stimulation site and the stimulation location are important factors that contribute to the variation between studies. The results of this study can provide professional athletes, firefighters, bodyguards, and therapists-among others in high-risk professions-with insightful information that can help them perform better on the job.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"34"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11759757/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143045801","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multiplex CRISPR/Cas9-mediated genome editing to address drought tolerance in wheat. 多重 CRISPR/Cas9 介导的基因组编辑,解决小麦的耐旱性问题。
IF 4.5 2区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2022-10-06 DOI: 10.1080/21645698.2022.2120313
Naglaa A Abdallah, Hany Elsharawy, Hamiss A Abulela, Roger Thilmony, Abdelhadi A Abdelhadi, Nagwa I Elarabi

Genome editing tools have rapidly been adopted by plant scientists for crop improvement. Genome editing using a multiplex sgRNA-CRISPR/Cas9 genome editing system is a useful technique for crop improvement in monocot species. In this study, we utilized precise gene editing techniques to generate wheat 3'(2'), 5'-bisphosphate nucleotidase (TaSal1) mutants using a multiplex sgRNA-CRISPR/Cas9 genome editing system. Five active TaSal1 homologous genes were found in the genome of Giza168 in addition to another apparently inactive gene on chromosome 4A. Three gRNAs were designed and used to target exons 4, 5 and 7 of the five wheat TaSal1 genes. Among the 120 Giza168 transgenic plants, 41 lines exhibited mutations and produced heritable TaSal1 mutations in the M1 progeny and 5 lines were full 5 gene knock-outs. These mutant plants exhibit a rolled-leaf phenotype in young leaves and bended stems, but there were no significant changes in the internode length and width, leaf morphology, and stem shape. Anatomical and scanning electron microscope studies of the young leaves of mutated TaSal1 lines showed closed stomata, increased stomata width and increase in the size of the bulliform cells. Sal1 mutant seedlings germinated and grew better on media containing polyethylene glycol than wildtype seedlings. Our results indicate that the application of the multiplex sgRNA-CRISPR/Cas9 genome editing is efficient tool for mutating more multiple TaSal1 loci in hexaploid wheat.

基因组编辑工具已被植物科学家迅速用于作物改良。使用多重 sgRNA-CRISPR/Cas9 基因组编辑系统进行基因组编辑是改良单子叶植物作物的一项有用技术。在本研究中,我们利用精确的基因编辑技术,使用多重 sgRNA-CRISPR/Cas9 基因组编辑系统生成了小麦 3'(2')、5'-双磷酸核苷酸酶(TaSal1)突变体。在 Giza168 的基因组中发现了五个活跃的 TaSal1 同源基因,此外在 4A 染色体上还发现了另一个明显不活跃的基因。设计并使用了三个 gRNA,分别靶向五个小麦 TaSal1 基因的第 4、5 和 7 号外显子。在 120 株 Giza168 转基因植株中,41 个品系出现突变,并在 M1 后代中产生可遗传的 TaSal1 突变,5 个品系为 5 个基因全基因敲除。这些突变植株表现出幼叶卷叶和茎弯曲的表型,但节间长度和宽度、叶片形态和茎的形状没有显著变化。对突变 TaSal1 株系幼叶的解剖学和扫描电子显微镜研究表明,突变株系的气孔闭合,气孔宽度增加,鼓状细胞体积增大。与野生型幼苗相比,Sal1 突变体幼苗在含有聚乙二醇的培养基上发芽和生长得更好。我们的研究结果表明,应用多重 sgRNA-CRISPR/Cas9 基因组编辑技术是在六倍体小麦中突变更多 TaSal1 基因位点的有效工具。
{"title":"Multiplex CRISPR/Cas9-mediated genome editing to address drought tolerance in wheat.","authors":"Naglaa A Abdallah, Hany Elsharawy, Hamiss A Abulela, Roger Thilmony, Abdelhadi A Abdelhadi, Nagwa I Elarabi","doi":"10.1080/21645698.2022.2120313","DOIUrl":"10.1080/21645698.2022.2120313","url":null,"abstract":"<p><p>Genome editing tools have rapidly been adopted by plant scientists for crop improvement. Genome editing using a multiplex sgRNA-CRISPR/Cas9 genome editing system is a useful technique for crop improvement in monocot species. In this study, we utilized precise gene editing techniques to generate wheat 3'(2'), 5'-bisphosphate nucleotidase (<i>TaSal1</i>) mutants using a multiplex sgRNA-CRISPR/Cas9 genome editing system. Five active <i>TaSal1</i> homologous genes were found in the genome of Giza168 in addition to another apparently inactive gene on chromosome 4A. Three gRNAs were designed and used to target exons 4, 5 and 7 of the five wheat <i>TaSal1</i> genes. Among the 120 Giza168 transgenic plants, 41 lines exhibited mutations and produced heritable <i>TaSal1</i> mutations in the M<sub>1</sub> progeny and 5 lines were full 5 gene knock-outs. These mutant plants exhibit a rolled-leaf phenotype in young leaves and bended stems, but there were no significant changes in the internode length and width, leaf morphology, and stem shape. Anatomical and scanning electron microscope studies of the young leaves of mutated <i>TaSal1</i> lines showed closed stomata, increased stomata width and increase in the size of the bulliform cells. <i>Sal1</i> mutant seedlings germinated and grew better on media containing polyethylene glycol than wildtype seedlings. Our results indicate that the application of the multiplex sgRNA-CRISPR/Cas9 genome editing is efficient tool for mutating more multiple TaSal1 loci in hexaploid wheat.</p>","PeriodicalId":54282,"journal":{"name":"Gm Crops & Food-Biotechnology in Agriculture and the Food Chain","volume":" ","pages":"1-17"},"PeriodicalIF":4.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"33490173","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antimicrobial capping agents on silver nanoparticles made via green method using natural products from banana plant waste.
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-02-07 DOI: 10.1080/21691401.2025.2462335
Jimmy K Kabeya, Nadège K Ngombe, Paulin K Mutwale, Justin B Safari, Gauta Gold Matlou, Rui W M Krause, Christian I Nkanga

Herein, we investigated the phytochemical composition and antibacterial activities of the organic layers from biosynthesized silver nanoparticles (AgNPs). AgNPs were synthesized using Musa paradisiaca and Musa sapientum extracts. UV-vis absorption in the 400-450 nm range indicated surface plasmonic resonance peak of AgNPs. Samples analyses using dynamic light scattering and transmission electron microscopy revealed the presence of particles within nanometric ranges, with sizes of 30-140 nm and 8-40 nm, respectively. Fourier transform infrared (FTIR) unveiled the presence of several organic functional groups on the surface of AgNPs, indicating the presence of phytochemicals from plant extracts. Thin layer chromatography (TLC) of the phytochemicals (capping agents) from AgNPs identified multiple groups of secondary metabolites. These phytochemical capping agents exhibited antibacterial activities against Staphylococcus aureus, Escherichia coli, and Pseudomonas aeruginosa, with minimum inhibitory concentrations ranging from 62.5 to 1000 µg/mL. Regardless of the bacterial species or plant parts (leaves or pseudo-stems), capping agents from M. sapientum nanoparticles displayed significantly enhanced antibacterial effectiveness compared to all other samples, including the raw plant extracts and biosynthesized capped and uncapped AgNPs. These results suggest the presence of antimicrobial phytochemicals on biosynthesized AgNPs, highlighting the promise of green nanoparticle synthesis as a valuable approach in bioprospecting antimicrobial agents.

{"title":"Antimicrobial capping agents on silver nanoparticles made via green method using natural products from banana plant waste.","authors":"Jimmy K Kabeya, Nadège K Ngombe, Paulin K Mutwale, Justin B Safari, Gauta Gold Matlou, Rui W M Krause, Christian I Nkanga","doi":"10.1080/21691401.2025.2462335","DOIUrl":"10.1080/21691401.2025.2462335","url":null,"abstract":"<p><p>Herein, we investigated the phytochemical composition and antibacterial activities of the organic layers from biosynthesized silver nanoparticles (AgNPs). AgNPs were synthesized using <i>Musa paradisiaca</i> and <i>Musa sapientum</i> extracts. UV-vis absorption in the 400-450 nm range indicated surface plasmonic resonance peak of AgNPs. Samples analyses using dynamic light scattering and transmission electron microscopy revealed the presence of particles within nanometric ranges, with sizes of 30-140 nm and 8-40 nm, respectively. Fourier transform infrared (FTIR) unveiled the presence of several organic functional groups on the surface of AgNPs, indicating the presence of phytochemicals from plant extracts. Thin layer chromatography (TLC) of the phytochemicals (capping agents) from AgNPs identified multiple groups of secondary metabolites. These phytochemical capping agents exhibited antibacterial activities against <i>Staphylococcus aureus</i>, <i>Escherichia coli</i>, and <i>Pseudomonas aeruginosa</i>, with minimum inhibitory concentrations ranging from 62.5 to 1000 µg/mL. Regardless of the bacterial species or plant parts (leaves or pseudo-stems), capping agents from <i>M. sapientum</i> nanoparticles displayed significantly enhanced antibacterial effectiveness compared to all other samples, including the raw plant extracts and biosynthesized capped and uncapped AgNPs. These results suggest the presence of antimicrobial phytochemicals on biosynthesized AgNPs, highlighting the promise of green nanoparticle synthesis as a valuable approach in bioprospecting antimicrobial agents.</p>","PeriodicalId":8736,"journal":{"name":"Artificial Cells, Nanomedicine, and Biotechnology","volume":"53 1","pages":"29-42"},"PeriodicalIF":4.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143370356","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correlation of MicroRNA-31 with Endometrial Receptivity in Patients with Repeated Implantation Failure of In Vitro Fertilization and Embryo Transfer.
IF 1.6 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-02-23 DOI: 10.1080/15476278.2025.2460263
Yan Tan, Bijun Du, Xixi Chen, Minhong Chen

Objective: This trial probed the correlation between miR-31 expression and endometrial receptivity (ER) in patients with repeated implantation failure (RIF) of in vitro fertilization and embryo transfer (IVF-ET).

Methods: A retrospective study of 80 infertility patients who underwent IVF-ET assisted conception treatment were divided into RIF group and normal pregnancy group (control group) according to the pregnancy outcome after embryo transfer. General information of both groups was collected. Endometrial tissues were collected in the middle luteal phase of the menstrual cycle before IVF-ET. miR-31 levels in endometrial tissues were measured, and endometrial tolerance indicator pulsatility index (PI), resistance index (RI), and endometrial thickness (Em) were detected. The correlation between endometrial miR-31 levels and ER indices was evaluated by Pearson method. ROC curves were utilized to analyze the efficacy of miR-31 in predicting RIF occurrence. The influencing factors of RIF were analyzed by binary Logistic regression.

Results: RIF patients had increased miR-31 expression level and endometrial tolerance indicator PI, and RI while decreased Em (p < 0.05). miR-31 in RIF patients was positively correlated with PI and RI, and negatively correlated with Em (p < 0.05). The area under the curve for miR-31 to predict the occurrence of RIF was 0.899, with a sensitivity of 0.750 and a specificity of 0.950. PI, RI, and miR-31 were risk factors for developing RIF in IVF-ET women, and Em was a protective factor (p < 0.05).

Conclusion: miR-31 in RIF patients is positively correlated with PI and RI, and negatively correlated with Em.

{"title":"Correlation of MicroRNA-31 with Endometrial Receptivity in Patients with Repeated Implantation Failure of <i>In Vitro</i> Fertilization and Embryo Transfer.","authors":"Yan Tan, Bijun Du, Xixi Chen, Minhong Chen","doi":"10.1080/15476278.2025.2460263","DOIUrl":"https://doi.org/10.1080/15476278.2025.2460263","url":null,"abstract":"<p><strong>Objective: </strong>This trial probed the correlation between miR-31 expression and endometrial receptivity (ER) in patients with repeated implantation failure (RIF) of in vitro fertilization and embryo transfer (IVF-ET).</p><p><strong>Methods: </strong>A retrospective study of 80 infertility patients who underwent IVF-ET assisted conception treatment were divided into RIF group and normal pregnancy group (control group) according to the pregnancy outcome after embryo transfer. General information of both groups was collected. Endometrial tissues were collected in the middle luteal phase of the menstrual cycle before IVF-ET. miR-31 levels in endometrial tissues were measured, and endometrial tolerance indicator pulsatility index (PI), resistance index (RI), and endometrial thickness (Em) were detected. The correlation between endometrial miR-31 levels and ER indices was evaluated by Pearson method. ROC curves were utilized to analyze the efficacy of miR-31 in predicting RIF occurrence. The influencing factors of RIF were analyzed by binary Logistic regression.</p><p><strong>Results: </strong>RIF patients had increased miR-31 expression level and endometrial tolerance indicator PI, and RI while decreased Em (<i>p</i> < 0.05). miR-31 in RIF patients was positively correlated with PI and RI, and negatively correlated with Em (<i>p</i> < 0.05). The area under the curve for miR-31 to predict the occurrence of RIF was 0.899, with a sensitivity of 0.750 and a specificity of 0.950. PI, RI, and miR-31 were risk factors for developing RIF in IVF-ET women, and Em was a protective factor (<i>p</i> < 0.05).</p><p><strong>Conclusion: </strong>miR-31 in RIF patients is positively correlated with PI and RI, and negatively correlated with Em.</p>","PeriodicalId":19596,"journal":{"name":"Organogenesis","volume":"21 1","pages":"2460263"},"PeriodicalIF":1.6,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143483502","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
ClaPEPCK4: target gene for breeding innovative watermelon germplasm with low malic acid and high sweetness. ClaPEPCK4:低苹果酸高甜度西瓜创新种质的靶基因。
IF 4.5 2区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-01-14 DOI: 10.1080/21645698.2025.2452702
Congji Yang, Jiale Shi, Yuanyuan Qin, ShengQi Hua, Jiancheng Bao, Xueyan Liu, Yuqi Peng, Yige Gu, Wei Dong

Malic acid markedly affects watermelon flavor. Reducing the malic acid content can significantly increase the sweetness of watermelon. An effective solution strategy is to reduce watermelon malic acid content through molecular breeding technology. In this study, we measured the TSS and pH of six watermelon varieties at four growth nodes. The TSS content was very low at 10 DAP and accumulated rapidly at 18, 26, and 34 DAP. Three phosphoenolpyruvate carboxykinase (PEPCK) genes of watermelon were identified and analyzed. The ClaPEPCK4 expression was inversely proportional to malate content variations in fruits. In transgenic watermelon plants, overexpressing the ClaPEPCK4 gene, malic acid content markedly decreased. In the knockout transgenic watermelon plants, two SNP mutations and one base deletion occurred in the ClaPEPCK4 gene, with the malic acid content in the leaves increasing considerably and the PEPCK enzyme activity reduced to half of the wild-type. It is interesting that the ClaPEPCK4 gene triggered the closure of leaf stomata under dark conditions in the knockout transgenic plants, which indicated its involvement in stomatal movement. In conclusion, this study provides a gene target ClaPEPCK4 for creating innovative new high-sweetness watermelon varieties.

苹果酸对西瓜风味有显著影响。降低苹果酸含量可以显著提高西瓜的甜度。通过分子育种技术降低西瓜苹果酸含量是有效的解决策略。本研究测定了6个西瓜品种在4个生育期的TSS和pH值。TSS含量在10 DAP时很低,在18、26和34 DAP时迅速积累。对西瓜磷酸烯醇丙酮酸羧激酶(PEPCK) 3个基因进行了鉴定和分析。ClaPEPCK4的表达量与果实中苹果酸含量的变化成反比。在转基因西瓜植株中,过表达ClaPEPCK4基因,苹果酸含量显著降低。在敲除转基因西瓜植株中,ClaPEPCK4基因发生了2个SNP突变和1个碱基缺失,叶片中苹果酸含量显著增加,PEPCK酶活性降至野生型的一半。有趣的是,ClaPEPCK4基因在敲除转基因植株中触发了黑暗条件下叶片气孔的关闭,表明其参与了气孔运动。综上所述,本研究为高甜度西瓜品种创新提供了ClaPEPCK4基因靶点。
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