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The Role of SUMO1 Modification of SOX9 in Cartilage Development Stimulated by Zinc Ions in Mice. 锌离子刺激小鼠软骨发育过程中 SOX9 的 SUMO1 修饰作用
IF 1.6 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-02-04 DOI: 10.1080/15476278.2025.2460269
Na Xue, Jing Zhao, Jing Yin, Liang Liu, Zhong Yang, Shuchao Zhai, Xiyun Bian, Xiang Gao

Zinc ions play a pivotal role in facilitating the development of cartilage in mice. Nevertheless, the precise underlying mechanism remains elusive. Our investigation was centered on elucidating the impact of zinc deficiency on cartilage maturation by modulating SUMO1 and UBC9 at both the protein and mRNA levels. We administered a regimen inducing zinc deficiency to gravid mice from E0.5 until euthanasia. Subsequently, we subjected the embryos to scrutiny employing HE, Safranin O staining and IHC. Primary chondrocytes were isolated from fetal mouse femoral condyles and utilized for Western blot analysis to discern the expression profiles of SUMO1, SUMO2/3, UBC9, SOX9, MMP13, Collagen II, RUNX2, and aggrecan. Furthermore, ATDC5 murine chondrocytes were subjected to treatment with ZnCl2, followed by RT-PCR assessment to scrutinize the expression levels of MMP13, Collagen II, RUNX2, and aggrecan. Additionally, we conducted Co-IP assays on ZnCl2-treated ATDC5 cells to explore the interaction between SOX9 and SUMO1. Our investigation unveiled that zinc deficiency led to a reduction in cartilage development, as evidenced by the HE results in fetal murine femur. Moreover, diminished expression levels of SUMO1 and UBC9 were observed in the IHC and Western blot results. Furthermore, Western blot and Co-IP assays revealed an augmented interaction between SOX9 and SUMO1, which was potentiated by ZnCl2 treatment. Significantly, mutations at the SUMOylation site of SOX9 resulted in alterations in the expression patterns of crucial chondrogenesis factors. This research underscores how zinc ions promote cartilage development through the modification of SOX9 by SUMO1.

锌离子在促进小鼠软骨发育方面发挥着关键作用。然而,其确切的内在机制仍然难以捉摸。我们的研究重点是通过在蛋白和 mRNA 水平上调节 SUMO1 和 UBC9,来阐明缺锌对软骨成熟的影响。我们从E0.5开始对怀孕小鼠进行缺锌诱导,直至安乐死。随后,我们利用 HE、Safranin O 染色和 IHC 对胚胎进行了仔细检查。我们从胎儿小鼠股骨髁中分离出原代软骨细胞,并利用Western印迹分析鉴定了SUMO1、SUMO2/3、UBC9、SOX9、MMP13、胶原蛋白II、RUNX2和凝集素的表达谱。此外,用 ZnCl2 处理 ATDC5 小鼠软骨细胞,然后进行 RT-PCR 评估,以仔细检查 MMP13、胶原蛋白 II、RUNX2 和 aggrecan 的表达水平。此外,我们还对氯化锌处理过的ATDC5细胞进行了Co-IP检测,以探索SOX9和SUMO1之间的相互作用。我们的研究发现,缺锌会导致软骨发育不良,胎鼠股骨的 HE 结果就是证明。此外,在 IHC 和 Western 印迹结果中还观察到 SUMO1 和 UBC9 的表达水平降低。此外,Western印迹和Co-IP检测显示,SOX9和SUMO1之间的相互作用增强了,而ZnCl2处理又增强了这种作用。值得注意的是,SOX9的SUMO化位点突变会导致关键软骨生成因子表达模式的改变。这项研究强调了锌离子是如何通过SUMO1修饰SOX9来促进软骨发育的。
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引用次数: 0
Maize 4-coumarate coenzyme A ligase Zm4CL-like9 gene positively regulates drought stress response in Arabidopsis thaliana.
IF 4.5 2区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-02-23 DOI: 10.1080/21645698.2025.2469942
Jiayi Fan, Zhipeng Luo, Yuankai Wang, Peng Jiao, Qingxu Wang, Yuntao Dai, Shuyan Guan, Yiyong Ma, Huiwei Yu, Siyan Liu

Maize is a major food crop in China, and drought is one of the major abiotic stresses that threaten the growth and development of the crop, seriously affecting the crop yield. 4-coumaric acid coenzyme A ligase (4CL) is a key enzyme in the phenylpropane metabolic pathway, which can regulate the lignin content of the plant and play an important role in the plant's resistance to drought stress, plays an important role in plant resistance to drought stress. In the present study, we screened the differentially expressed up-regulated gene Zm4CL-like9 under drought stress by pre-transcriptome sequencing data (PRJNA793522) in the laboratory, and analyzed the significant up-regulation of Zm4CL-like9 gene in roots under drought stress by qRT-PCR(Real-Time Quantitative Reverse Transcription PCR). The results of prokaryotic expression experiments showed that the protein encoded by the Zm4CL-like9 gene was able to be expressed in prokaryotic cells and could effectively improve the drought tolerance of E. coli. Phenotypic analysis of transgenic Arabidopsis plants under drought stress revealed that seed germination rate, root length, and plant survival after drought rehydration were significantly higher in transgenic Zm4CL-like9 Arabidopsis compared with wild-type Arabidopsis; physiological and biochemical indexes revealed that peroxidase activity, proline (Pro) content, and chlorophyll content were significantly higher in transgenic Arabidopsis compared with wild-type Arabidopsis. Under drought stress, the expression of drought-related genes was significantly up-regulated in transgenic Arabidopsis compared with wild-type Arabidopsis. Taken together, the Zm4CL-like9 gene enhances plant resistance to drought stress by reducing reactive oxygen species accumulation in plants.

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引用次数: 0
Monitoring nap deprivation-induced fatigue using fNIRS and deep learning.
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-23 DOI: 10.1007/s11571-025-10219-z
Pei Ma, Chenyang Pan, Huijuan Shen, Wushuang Shen, Hui Chen, Xuedian Zhang, Shuyu Xu, Jingzhou Xu, Tong Su

Fatigue-induced incidents in transportation, aerospace, military, and other areas have been on the rise, posing a threat to human life and safety. The determination of fatigue states holds significant importance, especially through reliable and conveniently available physiological indicators. Here, a portable custom-built fNIRS system was used to monitor the fatigue state caused by nap deprivation. fNIRS signals in ten channels at the prefrontal cortex were collected, changes in blood oxygen concentration were analyzed, followed by a deep learning model to classify fatigue states. For the high-dimensionality and multi-channel characteristics of the fNIRS signal data, a novel 1D revised CNN-ResNet network was proposed based on the double-layer channel attenuation residual block. The results showed a 97.78% accuracy in fatigue state classification, significantly superior than several conventional methods. Furthermore, a fatigue-arousal experiment was designed to explore the feasibility of forced arousal of fatigued subjects through exercise stimulation. The fNIRS results showed a significant increase in brain activity with the conduction of exercise. The proposed method serves as a reliable tool for the evaluation of fatigue states, potentially reducing fatigue-induced harms and risks.

在交通、航空航天、军事和其他领域,由疲劳引发的事故呈上升趋势,对人类的生命和安全构成威胁。疲劳状态的判定具有重要意义,尤其是通过可靠、便捷的生理指标。本文使用定制的便携式 fNIRS 系统来监测午睡剥夺导致的疲劳状态。该系统收集了前额叶皮层十个通道的 fNIRS 信号,分析了血氧浓度的变化,然后使用深度学习模型对疲劳状态进行分类。针对 fNIRS 信号数据的高维和多通道特点,提出了一种基于双层通道衰减残差块的新型一维修正 CNN-ResNet 网络。结果显示,疲劳状态分类的准确率为 97.78%,明显优于几种传统方法。此外,还设计了疲劳唤醒实验,以探索通过运动刺激强制唤醒疲劳受试者的可行性。fNIRS 结果显示,大脑活动随着运动的传导而显著增加。所提出的方法是评估疲劳状态的可靠工具,有可能减少疲劳引起的危害和风险。
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引用次数: 0
A novel adaptive lightweight multimodal efficient feature inference network ALME-FIN for EEG emotion recognition. 一种新的自适应轻量级多模态高效特征推理网络ALME-FIN。
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-13 DOI: 10.1007/s11571-024-10186-x
Xiaoliang Guo, Shuo Zhai

Enhancing the accuracy of emotion recognition models through multimodal learning is a common approach. However, challenges such as insufficient modal feature learning in multimodal inference and scarcity of sample data continue to pose obstacles that need to be overcome. Therefore, we propose a novel adaptive lightweight multimodal efficient feature inference network (ALME-FIN). We introduce a time-domain lightweight adaptive network (TDLAN) and a two-dimensional dynamic focusing network (TDDFN) for multimodal feature learning. The TDLAN incorporates the denoising process as an integral part of network training, achieving adaptive denoising for each sample through the continuous optimization of the trainable filtering threshold. Simultaneously, it incorporates an interactive convolutional sampling module, enabling lightweight multi-scale feature extraction in the time domain. TDDFN effectively extracts core image features while filtering out redundancies. During the training process, the Multi-network dynamic gradient adjustment framework (MDGAF) dynamically monitors the feature learning efficacy across different modalities. It timely adjusts the training gradients of networks to allocate additional optimization time for under-optimized modalities, thereby maximizing the utilization of multimodal feature information. Moreover, the introduction of a Multi-class relationship interaction module prior to the classifier aids the model in clearly understanding the relationships among different category samples. This approach enables the model to achieve relatively accurate emotion recognition even in scenarios of limited sample availability. Compared to existing multimodal learning techniques, ALME-FIN exhibits a more efficient multimodal feature inference method that can achieve satisfactory emotional recognition performance even with a limited number of samples.

通过多模态学习来提高情绪识别模型的准确性是一种常用的方法。然而,诸如多模态推理中模态特征学习不足和样本数据稀缺等挑战仍然是需要克服的障碍。因此,我们提出了一种新的自适应轻量级多模态高效特征推理网络(ALME-FIN)。我们引入了时域轻量级自适应网络(TDLAN)和二维动态聚焦网络(TDDFN)用于多模态特征学习。TDLAN将去噪过程作为网络训练的一个组成部分,通过对可训练滤波阈值的不断优化,实现对每个样本的自适应去噪。同时,它结合了一个交互式卷积采样模块,在时域上实现了轻量级的多尺度特征提取。TDDFN有效地提取核心图像特征,同时滤除冗余。在训练过程中,多网络动态梯度调整框架(MDGAF)动态监测不同模式下的特征学习效果。及时调整网络的训练梯度,为未优化的模态分配额外的优化时间,从而最大限度地利用多模态特征信息。此外,在分类器之前引入多类关系交互模块,有助于模型清晰地理解不同类别样本之间的关系。这种方法使模型即使在样本有限的情况下也能实现相对准确的情绪识别。与现有的多模态学习技术相比,ALME-FIN展示了一种更高效的多模态特征推理方法,即使在有限的样本数量下也能获得令人满意的情绪识别性能。
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引用次数: 0
Cross-subject mental workload recognition using bi-classifier domain adversarial learning. 基于双分类器领域对抗学习的跨学科心理工作量识别。
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-09 DOI: 10.1007/s11571-024-10215-9
Yueying Zhou, Pengpai Wang, Peiliang Gong, Peng Wan, Xuyun Wen, Daoqiang Zhang

To deploy Electroencephalogram (EEG) based Mental Workload Recognition (MWR) systems in the real world, it is crucial to develop general models that can be applied across subjects. Previous studies have utilized domain adaptation to mitigate inter-subject discrepancies in EEG data distributions. However, they have focused on reducing global domain discrepancy, while neglecting local workload-categorical domain divergence. This degrades the workload-discriminating ability of subject-invariant features. To deal with this problem, we propose a novel joint category-wise and domain-wise alignment Domain Adaptation (cdaDA) algorithm, using bi-classifier learning and domain discriminative adversarial learning. The bi-classifier learning approach is adopted to address the similarities and differences between categories, helping to align EEG data within the same mental workload categories. Additionally, the domain discriminative adversarial learning technique is adopted to consider global domain information by minimizing global domain discrepancy. By integrating both local category information and global domain information, the cdaDA model performs a coarse-to-fine alignment and achieves promising cross-subject MWR results.

为了在现实世界中部署基于脑电图(EEG)的精神负荷识别(MWR)系统,开发可跨学科应用的通用模型至关重要。以往的研究利用领域自适应来缓解脑电数据分布的主体间差异。然而,它们关注的是减少全局域差异,而忽略了局部工作负载-分类域差异。这降低了主题不变特征的工作负载区分能力。为了解决这一问题,我们提出了一种新的联合类别智能和领域智能对齐领域自适应(cdaDA)算法,该算法使用双分类器学习和领域判别对抗学习。采用双分类器学习方法来解决类别之间的相似性和差异性,有助于在相同的脑力工作类别中对齐脑电图数据。此外,采用域判别对抗学习技术,考虑全局域信息,使全局域差异最小化。通过整合局部类别信息和全局领域信息,cdaDA模型进行了从粗到精的对齐,并获得了令人满意的跨学科MWR结果。
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引用次数: 0
Regulatory mechanism of inhibitory interneurons with time-delay on epileptic seizures under sinusoidal sensory stimulation.
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-02-05 DOI: 10.1007/s11571-025-10227-z
Zhihui Wang, Xindan Wei, Lixia Duan

Epilepsy is a neurological disorder in which complex electrophysiological processes are closely linked to inherent nonlinear kinetic properties. This study investigates the effects of sinusoidal sensory stimulation bias and time-delay on the dynamics of epileptic seizures within a corticothalamic neural network model. The results indicate that an increase in sensory stimulation bias can prematurely terminate seizures, and high-frequency stimulation can induce a phenomenon of frequency resonance. Meanwhile, discharge states transitions are associated with the emergence of bifurcation points. Time-delay exerts a significant regulatory influence on pathways with delay embedding (I2-PY), whereas its impact on pathways without delay embedding (I1-I1 and thalamic relay nucleus (TC)-I2) is negligible. Under sinusoidal sensory stimulation, the responses of three pathways (I1-I1, I1-PY, and I2-PY) associated with inhibitory interneurons reveal that the inhibitory properties of interneurons can suppress seizures; however, an excessively strong inhibitory effect may also precipitate seizures and facilitate state transitions. These findings contribute to a deeper understanding of seizure dynamics and may guide future research in the transmission and evolution of seizures.

癫痫是一种神经系统疾病,其中复杂的电生理过程与固有的非线性动力学特性密切相关。本研究探讨了正弦感觉刺激偏差和时间延迟对皮质-丘脑神经网络模型中癫痫发作动态的影响。结果表明,感觉刺激偏差的增加会提前终止癫痫发作,高频刺激会诱发频率共振现象。同时,放电状态的转换与分叉点的出现有关。时间延迟对有延迟嵌入的通路(I2-PY)有显著的调节作用,而对无延迟嵌入的通路(I1-I1 和丘脑中继核(TC)-I2)的影响则微乎其微。在正弦波感觉刺激下,与抑制性中间神经元相关的三条通路(I1-I1、I1-PY 和 I2-PY)的反应显示,中间神经元的抑制特性可以抑制癫痫发作;然而,过强的抑制作用也可能促使癫痫发作并促进状态转换。这些发现有助于加深对癫痫发作动态的理解,并可指导今后对癫痫发作的传播和演变的研究。
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引用次数: 0
In vivo toxicity of chitosan-based nanoparticles: a systematic review.
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-02-09 DOI: 10.1080/21691401.2025.2462328
Shela Salsabila, Miski Aghnia Khairinisa, Nasrul Wathoni, Irna Sufiawati, Wan Ezumi Mohd Fuad, Nur Kusaira Khairul Ikram, Muchtaridi Muchtaridi

Chitosan nanoparticles have been extensively utilised as polymeric drug carriers in nanoparticles formulations due to their potential to enhance drug delivery, efficacy, and safety. Numerous toxicity studies have been previously conducted to assess the safety profile of chitosan-based nanoparticles. These toxicity studies employed various methodologies, including test animals, interventions, and different routes of administration. This review aims to summarise research on the safety profile of chitosan-based nanoparticles in drug delivery, with a focus on general toxicity tests to determine LD50 and NOAEL values. It can serve as a repository and reference for chitosan-based nanoparticles, facilitating future research and further development of drugs delivery system using chitosan nanoparticles. Publications from 2014 to 2024 were obtained from PubMed, Scopus, Google Scholar, and ScienceDirect, in accordance with the inclusion and exclusion criteria.The ARRIVE 2.0 guidelines were employed to evaluate the quality and risk-of-bias in the in vivo toxicity studies. The results demonstrated favourable toxicity profiles, often exhibiting reduced toxicity compared to free drugs or substances. Acute toxicity studies consistently reported high LD50 values, frequently exceeding 5000 mg/kg body weight, while subacute studies typically revealed no significant adverse effects. Various routes of administration varied, including oral, intravenous, intraperitoneal, inhalation, and topical, each demonstrating promising safety profiles.

{"title":"<i>In vivo</i> toxicity of chitosan-based nanoparticles: a systematic review.","authors":"Shela Salsabila, Miski Aghnia Khairinisa, Nasrul Wathoni, Irna Sufiawati, Wan Ezumi Mohd Fuad, Nur Kusaira Khairul Ikram, Muchtaridi Muchtaridi","doi":"10.1080/21691401.2025.2462328","DOIUrl":"https://doi.org/10.1080/21691401.2025.2462328","url":null,"abstract":"<p><p>Chitosan nanoparticles have been extensively utilised as polymeric drug carriers in nanoparticles formulations due to their potential to enhance drug delivery, efficacy, and safety. Numerous toxicity studies have been previously conducted to assess the safety profile of chitosan-based nanoparticles. These toxicity studies employed various methodologies, including test animals, interventions, and different routes of administration. This review aims to summarise research on the safety profile of chitosan-based nanoparticles in drug delivery, with a focus on general toxicity tests to determine LD50 and NOAEL values. It can serve as a repository and reference for chitosan-based nanoparticles, facilitating future research and further development of drugs delivery system using chitosan nanoparticles. Publications from 2014 to 2024 were obtained from PubMed, Scopus, Google Scholar, and ScienceDirect, in accordance with the inclusion and exclusion criteria.The ARRIVE 2.0 guidelines were employed to evaluate the quality and risk-of-bias in the <i>in vivo</i> toxicity studies. The results demonstrated favourable toxicity profiles, often exhibiting reduced toxicity compared to free drugs or substances. Acute toxicity studies consistently reported high LD50 values, frequently exceeding 5000 mg/kg body weight, while subacute studies typically revealed no significant adverse effects. Various routes of administration varied, including oral, intravenous, intraperitoneal, inhalation, and topical, each demonstrating promising safety profiles.</p>","PeriodicalId":8736,"journal":{"name":"Artificial Cells, Nanomedicine, and Biotechnology","volume":"53 1","pages":"1-15"},"PeriodicalIF":4.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143381557","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Reciprocal causation relationship between rumination thinking and sleep quality: a resting-state fMRI study.
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-02-20 DOI: 10.1007/s11571-025-10223-3
Shiyan Yang, Xu Lei

Rumination thinking is a type of negative repetitive thinking, a tendency to constantly focus on the causes, consequences and other aspects of negative events, which has implications for a variety of psychiatric disorders. Previous studies have confirmed a strong association between rumination thinking and poor sleep or insomnia, but the direction of causality between the two is not entirely clear. This study examined the relationship between rumination thinking and sleep quality using a longitudinal approach and resting-state functional MRI data. Participants were 373 university students (males: n = 84, 18.67 ± 0.76 years old) who completed questionnaires at two time points (T1 and T2) and had resting-state MRI data collected. The results of the cross-lagged model analysis revealed a bidirectional causal relationship between rumination thinking and sleep quality. Additionally, the functional connectivity (FC) of the precuneus and lingual gyrus was found to be negatively correlated with rumination thinking and sleep quality. Furthermore, mediation analysis showed that rumination thinking at T1 fully mediated the relationship between FC of the precuneus-lingual and sleep quality at T2. These findings suggest that rumination thinking and sleep quality are causally related in a bidirectional manner and that the FC of the precuneus and lingual gyrus may serve as the neural basis for rumination thinking to predict sleep quality. Overall, this study provides new insights for enhancing sleep quality and promoting overall health.

Supplementary information: The online version contains supplementary material available at 10.1007/s11571-025-10223-3.

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引用次数: 0
Machine learning-based integration develops a disulfidptosis-related lncRNA signature for improving outcomes in gastric cancer. 基于机器学习的整合开发了一个与二硫中毒相关的lncRNA信号,以改善胃癌的预后。
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2024-12-19 DOI: 10.1080/21691401.2024.2440415
Tianze Zhang, Yuqing Chen, Zhiping Xiang

Gastric cancer remains one of the deadliest cancers globally due to delayed detection and limited treatment options, underscoring the critical need for innovative prognostic methods. Disulfidptosis, a recently discovered programmed cell death triggered by disulphide stress, presents a fresh avenue for therapeutic exploration. This research examines disulfidptosis-related long noncoding RNAs (DRLs) in gastric cancer, with the goal of leveraging these lncRNAs as potential markers to enhance patient outcomes and treatment approaches. Comprehensive genomic and clinical data from stomach adenocarcinoma (STAD) were obtained from The Cancer Genome Atlas (TCGA). Employing least absolute shrinkage and selection operator (LASSO) regression analysis, a prognostic model was devised incorporating five key DRLs to forecast survival rates. The effectiveness of this model was validated using Kaplan-Meier survival plots, receiver operating characteristic (ROC) curves, and extensive functional enrichment studies. The importance of select lncRNAs and the expression variability of genes tied to disulfidptosis were validated via quantitative real-time PCR (qRT-PCR) and Western blot tests, establishing a solid foundation for their prognostic utility. Analyses of functional enrichment and tumour mutation burden highlighted the biological importance of these DRLs, connecting them to critical cancer pathways and immune responses. These discoveries broaden our comprehension of the molecular framework of gastric cancer and bolster the development of tailored treatment plans, highlighting the substantial role of DRLs in clinical prognosis and therapeutic intervention.

由于检测延迟和治疗选择有限,胃癌仍然是全球最致命的癌症之一,强调了对创新预后方法的迫切需要。二硫细胞凋亡是最近发现的一种由二硫应激引发的程序性细胞死亡,为治疗探索提供了新的途径。本研究探讨了胃癌中与二硫分解相关的长链非编码rna (drl),目的是利用这些lncrna作为潜在的标记物来改善患者的预后和治疗方法。从癌症基因组图谱(TCGA)中获得了胃腺癌(STAD)的全面基因组和临床数据。采用最小绝对收缩和选择算子(LASSO)回归分析,设计了一个包含五个关键drl的预后模型来预测生存率。通过Kaplan-Meier生存图、受试者工作特征(ROC)曲线和广泛的功能富集研究验证了该模型的有效性。通过定量实时PCR (qRT-PCR)和Western blot测试验证了选择的lncrna的重要性和与双曲下垂相关基因的表达变异性,为其预后应用奠定了坚实的基础。功能富集和肿瘤突变负担的分析强调了这些drl的生物学重要性,将它们与关键的癌症途径和免疫反应联系起来。这些发现拓宽了我们对胃癌分子框架的理解,促进了量身定制治疗方案的发展,突出了drl在临床预后和治疗干预中的重要作用。
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引用次数: 0
The length and the width of the human brain circuit connections are strongly correlated. 人类大脑回路连接的长度和宽度是紧密相关的。
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-09 DOI: 10.1007/s11571-024-10201-1
Dániel Hegedűs, Vince Grolmusz

The correlations of several fundamental properties of human brain connections are investigated in a consensus connectome, constructed from 1064 braingraphs, each on 1015 vertices, corresponding to 1015 anatomical brain areas. The properties examined include the edge length, the fiber count, or edge width, meaning the number of discovered axon bundles forming the edge and the occurrence number of the edge, meaning the number of individual braingraphs where the edge exists. By using our previously published robust braingraphs at https://braingraph.org, we have prepared a single consensus graph from the data and compared the statistical similarity of the edge occurrence numbers, edge lengths, and fiber counts of the edges. We have found a strong positive Spearman correlation between the edge occurrence numbers and the fiber count numbers, showing that statistically, the most frequent cerebral connections have the largest widths, i.e., the fiber count. We have found a negative Spearman correlation between the fiber lengths and fiber counts, showing that, typically, the shortest edges are the widest or strongest by their fiber counts. We have also found a negative Spearman correlation between the occurrence numbers and the edge lengths: it shows that typically, the long edges are infrequent, and the frequent edges are short.

共识连接组由 1064 个 braingraphs 构建而成,每个 braingraphs 有 1015 个顶点,对应 1015 个大脑解剖区域。所研究的属性包括边缘长度、纤维数或边缘宽度(即形成边缘的轴突束的发现数量)以及边缘的出现次数(即存在边缘的单个布拉因图的数量)。通过使用我们之前在 https://braingraph.org 上发布的稳健 braingraphs,我们从数据中准备了一个单一的共识图,并比较了边缘出现数、边缘长度和边缘纤维数的统计相似性。我们发现边缘出现数和纤维数之间存在很强的 Spearman 正相关性,这表明从统计学角度看,最频繁的大脑连接具有最大的宽度,即纤维数。我们发现,纤维长度与纤维数之间存在负的斯皮尔曼相关性,这表明,通常情况下,最短的边缘在纤维数上是最宽或最强的。我们还发现,出现次数与边缘长度之间存在负的斯皮尔曼相关性:这表明,通常情况下,长边缘不常见,而常见的边缘较短。
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引用次数: 0
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