Pub Date : 2025-12-01Epub Date: 2025-01-24DOI: 10.1007/s11571-025-10220-6
Long Chen, Yihao Hu, Zhongpeng Wang, Lei Zhang, Chuxiang Jian, Shengcui Cheng, Dong Ming
Motor planning plays a pivotal role in daily life. Transcutaneous auricular vagus nerve stimulation (taVNS) has been demonstrated to enhance decision-making efficiency, illustrating its potential use in cognitive modulation. However, current research primarily focuses on behavioral and single-modal electrophysiological signal, such as electroencephalography (EEG) and electrocardiography (ECG). To investigate the effect of taVNS on motor planning, a total of 21 subjects were recruited for this study and were divided into two groups: active group (n = 10) and sham group (n = 11). Each subject was required to be involved in a single-blind, sham-controlled, between-subject end-state comfort (ESC) experiment. The study compared behavioral indicators and electrophysiological features before and following taVNS. The results indicated a notable reduction in reaction time and an appreciable increase in the proportion of end-state comfort among the participants following taVNS, accompanied by notable alterations in motor-related cortical potential (MRCP) amplitude, low-frequency power of HRV (LF), and cortico-cardiac coherence, particularly in the parietal and occipital regions. These findings show that taVNS may impact the brain and heart, potentially enhancing their interaction, and improve participants' ability of motor planning.
{"title":"Effects of transcutaneous auricular vagus nerve stimulation (taVNS) on motor planning: a multimodal signal study.","authors":"Long Chen, Yihao Hu, Zhongpeng Wang, Lei Zhang, Chuxiang Jian, Shengcui Cheng, Dong Ming","doi":"10.1007/s11571-025-10220-6","DOIUrl":"10.1007/s11571-025-10220-6","url":null,"abstract":"<p><p>Motor planning plays a pivotal role in daily life. Transcutaneous auricular vagus nerve stimulation (taVNS) has been demonstrated to enhance decision-making efficiency, illustrating its potential use in cognitive modulation. However, current research primarily focuses on behavioral and single-modal electrophysiological signal, such as electroencephalography (EEG) and electrocardiography (ECG). To investigate the effect of taVNS on motor planning, a total of 21 subjects were recruited for this study and were divided into two groups: active group (n = 10) and sham group (n = 11). Each subject was required to be involved in a single-blind, sham-controlled, between-subject end-state comfort (ESC) experiment. The study compared behavioral indicators and electrophysiological features before and following taVNS. The results indicated a notable reduction in reaction time and an appreciable increase in the proportion of end-state comfort among the participants following taVNS, accompanied by notable alterations in motor-related cortical potential (MRCP) amplitude, low-frequency power of HRV (LF), and cortico-cardiac coherence, particularly in the parietal and occipital regions. These findings show that taVNS may impact the brain and heart, potentially enhancing their interaction, and improve participants' ability of motor planning.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"35"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11759740/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143045764","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Identifying the cognitive state can help educators understand the evolving thought processes of learners, and it is important in promoting the development of higher-order thinking skills (HOTS). Cognitive neuroscience research identifies cognitive states by designing experimental tasks and recording electroencephalography (EEG) signals during task performance. However, most of the previous studies primarily concentrated on extracting features from individual channels in single-type tasks, ignoring the interconnection across channels. In this study, three learning activities (i.e., video watching activity, keyword extracting activity, and essay creating activity) were designed based on a revised Bloom's taxonomy and the Interactive-Constructive-Active-Passive framework and used with 31 college students. The EEG signals were recorded when they were engaged in these activities. First, whole-brain network temporal dynamics were characterized by EEG microstate sequence analysis. Such dynamic changes rely on learning activity and corresponding functional brain systems. Subsequently, phase locking value was used to construct synchrony-based functional brain networks. The network characteristics were extracted to be inputted into different machine learning classifiers: Support Vector Machine, K-Nearest Neighbour, Random Forest, and eXtreme Gradient Boosting (XGBoost). XGBoost showed superior performance in the classification of cognitive states, with an accuracy of 88.07%. Furthermore, SHapley Additive exPlanations (SHAP) was adopted to reveal the connections between different brain regions that contributed to the classification of cognitive state. SHAP analysis reveals that the connections in the frontal, temporal, and central regions are most important for the high cognitive state. Collectively, this study may provide further evidence for educators to design cognitive-guided instructional activities to enhance learners' HOTS.
{"title":"Multi-level cognitive state classification of learners using complex brain networks and interpretable machine learning.","authors":"Xiuling He, Yue Li, Xiong Xiao, Yingting Li, Jing Fang, Ruijie Zhou","doi":"10.1007/s11571-024-10203-z","DOIUrl":"https://doi.org/10.1007/s11571-024-10203-z","url":null,"abstract":"<p><p>Identifying the cognitive state can help educators understand the evolving thought processes of learners, and it is important in promoting the development of higher-order thinking skills (HOTS). Cognitive neuroscience research identifies cognitive states by designing experimental tasks and recording electroencephalography (EEG) signals during task performance. However, most of the previous studies primarily concentrated on extracting features from individual channels in single-type tasks, ignoring the interconnection across channels. In this study, three learning activities (i.e., video watching activity, keyword extracting activity, and essay creating activity) were designed based on a revised Bloom's taxonomy and the Interactive-Constructive-Active-Passive framework and used with 31 college students. The EEG signals were recorded when they were engaged in these activities. First, whole-brain network temporal dynamics were characterized by EEG microstate sequence analysis. Such dynamic changes rely on learning activity and corresponding functional brain systems. Subsequently, phase locking value was used to construct synchrony-based functional brain networks. The network characteristics were extracted to be inputted into different machine learning classifiers: Support Vector Machine, K-Nearest Neighbour, Random Forest, and eXtreme Gradient Boosting (XGBoost). XGBoost showed superior performance in the classification of cognitive states, with an accuracy of 88.07%. Furthermore, SHapley Additive exPlanations (SHAP) was adopted to reveal the connections between different brain regions that contributed to the classification of cognitive state. SHAP analysis reveals that the connections in the frontal, temporal, and central regions are most important for the high cognitive state. Collectively, this study may provide further evidence for educators to design cognitive-guided instructional activities to enhance learners' HOTS.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"5"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11699182/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142930821","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2024-12-24DOI: 10.1080/21645698.2024.2423987
Ufuoma Akpojotor, Olubusayo Oluwole, Olaniyi Oyatomi, Rajneesh Paliwal, Michael Abberton
To feed the world's expanding population, crop breeders need to increase agricultural productivity and expand major crops base. Orphan crops are indigenously important crops with great potential because they are climate resilient, highly nutritious, contain nutraceutical compounds, and can improve the livelihood of smallholder farmers and consumers, but they have received little or no scientific attention. This review article examines several research and developmental strategies for hastening the improvement of these crops so that they can effectively play their role in securing food and nutrition. The integration of both research and developmental approaches will open up modern opportunities for crop improvement. We summarized ways in which advanced tools in phenotyping and genotyping, using high-throughput processes, can be used to accelerate their improvement. Finally, we suggest roles the genebanks can play in improving orphan crops, as the utilization of plant genetic resources is important for the genetic improvement of a crop.
{"title":"Research and developmental strategies to hasten the improvement of orphan crops.","authors":"Ufuoma Akpojotor, Olubusayo Oluwole, Olaniyi Oyatomi, Rajneesh Paliwal, Michael Abberton","doi":"10.1080/21645698.2024.2423987","DOIUrl":"https://doi.org/10.1080/21645698.2024.2423987","url":null,"abstract":"<p><p>To feed the world's expanding population, crop breeders need to increase agricultural productivity and expand major crops base. Orphan crops are indigenously important crops with great potential because they are climate resilient, highly nutritious, contain nutraceutical compounds, and can improve the livelihood of smallholder farmers and consumers, but they have received little or no scientific attention. This review article examines several research and developmental strategies for hastening the improvement of these crops so that they can effectively play their role in securing food and nutrition. The integration of both research and developmental approaches will open up modern opportunities for crop improvement. We summarized ways in which advanced tools in phenotyping and genotyping, using high-throughput processes, can be used to accelerate their improvement. Finally, we suggest roles the genebanks can play in improving orphan crops, as the utilization of plant genetic resources is important for the genetic improvement of a crop.</p>","PeriodicalId":54282,"journal":{"name":"Gm Crops & Food-Biotechnology in Agriculture and the Food Chain","volume":"16 1","pages":"46-71"},"PeriodicalIF":4.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142883650","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-01-09DOI: 10.1007/s11571-024-10190-1
K G Shanthi, A Mary Joy Kinol, S Rukmani Devi, K Kannan
In recent years, Wireless Sensor Networks (WSN) have become vital because of their versatility in numerous applications. Nevertheless, the attain problems like inherent noise, and limited node computation capabilities, result in reduced sensor node lifespan as well as enhanced power consumption. To tackle such problems, this study develops a Modified-Distributed Arithmetic-Offset Binary Coding-based Adaptive Finite Impulse Response (MDA-OBC based AFIR) framework. By leveraging Modified Distributed Arithmetic (MDA) which optimizes arithmetic operations by replacing the multipliers with lookup tables (LUT) hence minimizing energy consumption as well as computational complexity. Offset Binary Coding (OBC) enhanced the efficiency of data transmission by minimizing the data representation overhead. In addition to this, the adaptive strategy is incorporated with the Adaptive Finite Impulse Response (AFIR) framework permitting the filters to dynamically adjust to varying signal characteristics, thus offering high noise suppression and low distortion rates. Comprehensive simulations and comparative analysis validate the effectiveness of the proposed MDA-OBC-based AFIR method. The proposed method attained a lower energy consumption of 1.5 J and 130 W power consumption than the traditional implementations, resulting in significant energy efficiency and data transmission in signal preprocessing and noise suppression in WSNs.
{"title":"Cognitive neurodynamic approaches to adaptive signal processing in wireless sensor networks.","authors":"K G Shanthi, A Mary Joy Kinol, S Rukmani Devi, K Kannan","doi":"10.1007/s11571-024-10190-1","DOIUrl":"10.1007/s11571-024-10190-1","url":null,"abstract":"<p><p>In recent years, Wireless Sensor Networks (WSN) have become vital because of their versatility in numerous applications. Nevertheless, the attain problems like inherent noise, and limited node computation capabilities, result in reduced sensor node lifespan as well as enhanced power consumption. To tackle such problems, this study develops a Modified-Distributed Arithmetic-Offset Binary Coding-based Adaptive Finite Impulse Response (MDA-OBC based AFIR) framework. By leveraging Modified Distributed Arithmetic (MDA) which optimizes arithmetic operations by replacing the multipliers with lookup tables (LUT) hence minimizing energy consumption as well as computational complexity. Offset Binary Coding (OBC) enhanced the efficiency of data transmission by minimizing the data representation overhead. In addition to this, the adaptive strategy is incorporated with the Adaptive Finite Impulse Response (AFIR) framework permitting the filters to dynamically adjust to varying signal characteristics, thus offering high noise suppression and low distortion rates. Comprehensive simulations and comparative analysis validate the effectiveness of the proposed MDA-OBC-based AFIR method. The proposed method attained a lower energy consumption of 1.5 J and 130 W power consumption than the traditional implementations, resulting in significant energy efficiency and data transmission in signal preprocessing and noise suppression in WSNs.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"11"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11717781/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142969905","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Triple-negative breast cancer (TNBC) is a significant global health issue, with high mortality rates. The chemotherapeutic drugs currently used for TNBC have significant side effects, impacting both normal and cancer cells. In this study, we investigated a potential use of fruit peel extract of Psidium guajava (PGP) encapsulated with chitosan nanoparticles (CSNPs) to combat TNBC. The synthesized PGP-CSNPs were characterized using UV-vis spectroscopy, Fourier transform infra-red (FTIR) spectroscopy, TEM and GC-MS. The maximum loading capacity and encapsulation efficacy of PGP-CSNPs were found to be 72.5 ± 0.49% and 92.9 ± 0.10%, respectively. Furthermore, in vitro cytotoxicity was assessed, and the IC50 value for PGP-CSNPs was 50.13 µg/mL. It was observed that PGP-CSNPs could induce apoptosis in MDA-MB-231 cells in dose-dependent manner. Furthermore, molecular docking was performed for bioactive compounds retrieved from PGP-CSNPs against human tumour suppressor proteins Bcl2, and results showed that the PGP-CSNPs had lower binding energy than cisplatin. This suggests that, the synthesized PGP-CSNPs have the potential to serve as a therapeutic agent for tackling TNBC. However, to validate its efficacy in human therapy, furthermore pre-clinical and clinical procedures should be examined, as this is an ongoing and significant step towards developing an effective and safe anticancer drug.
{"title":"An integrated <i>in vitro</i> and <i>in silico</i> approach to assess targeted cytotoxicity against MDA-MB-231 triple-negative breast cancer cells with <i>Psidium guajava</i> peel-derived chitosan nanoparticles.","authors":"Vino Udappusamy, Rajan Thinagaran, Vijayakumar Mayakrishnan, Janani Balakarthikeyan, Priya Kannappan, Sameer Al-Ghamdi, Naif Abdurhman Alrudian, Mohammed Saad Alqahtani, Khalid Albasheer, Chandrabose Sureka, Mahmoud H El-Bidawy, Nesreen Alsanousi, Sahar Gamil, Thiyagarajan Ramesh","doi":"10.1080/21691401.2025.2462333","DOIUrl":"https://doi.org/10.1080/21691401.2025.2462333","url":null,"abstract":"<p><p>Triple-negative breast cancer (TNBC) is a significant global health issue, with high mortality rates. The chemotherapeutic drugs currently used for TNBC have significant side effects, impacting both normal and cancer cells. In this study, we investigated a potential use of fruit peel extract of <i>Psidium guajava</i> (PGP) encapsulated with chitosan nanoparticles (CSNPs) to combat TNBC. The synthesized PGP-CSNPs were characterized using UV-vis spectroscopy, Fourier transform infra-red (FTIR) spectroscopy, TEM and GC-MS. The maximum loading capacity and encapsulation efficacy of PGP-CSNPs were found to be 72.5 ± 0.49% and 92.9 ± 0.10%, respectively. Furthermore, <i>in vitro</i> cytotoxicity was assessed, and the IC<sub>50</sub> value for PGP-CSNPs was 50.13 µg/mL. It was observed that PGP-CSNPs could induce apoptosis in MDA-MB-231 cells in dose-dependent manner. Furthermore, molecular docking was performed for bioactive compounds retrieved from PGP-CSNPs against human tumour suppressor proteins Bcl2, and results showed that the PGP-CSNPs had lower binding energy than cisplatin. This suggests that, the synthesized PGP-CSNPs have the potential to serve as a therapeutic agent for tackling TNBC. However, to validate its efficacy in human therapy, furthermore pre-clinical and clinical procedures should be examined, as this is an ongoing and significant step towards developing an effective and safe anticancer drug.</p>","PeriodicalId":8736,"journal":{"name":"Artificial Cells, Nanomedicine, and Biotechnology","volume":"53 1","pages":"43-55"},"PeriodicalIF":4.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143381561","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-01-09DOI: 10.1007/s11571-024-10204-y
Haibin Yin, Xiaojuan Sun, Kai Yang, Yueheng Lan, Zeying Lu
The dentate gyrus (DG) in hippocampus is reported to perform pattern separation, converting similar inputs into different outputs and thus avoiding memory interference. Previous studies have found that human and mice with epilepsy have significant pattern separation defects and a portion of adult-born granule cells (abGCs) migrate abnormally into the hilus, forming hilus ectopic granule cells (HEGCs). For the lack of relevant pathophysiological experiments, how HEGCs affect pattern separation remains unclear. Therefore, in this paper, we will construct the DG neuronal circuit and focus on discussing effects of HEGCs on pattern separation numerically. The obtained results showed that HEGCs impaired pattern separation efficiency since the sparse firing of granule cells (GCs) was destroyed. We provided new insights into the underlining mechanisms of HEGCs impairing pattern separation through analyzing two excitatory circuits: GC-HEGC-GC and GC-Mossy cell (MC)-GC, both of which involve the participation of HEGCs within the DG. It is revealed that the recurrent excitatory circuit GC-HEGC-GC formed by HEGCs mossy fiber sprouting significantly enhanced GCs activity, consequently disrupted pattern separation. However, another excitatory circuit had negligible effects on pattern separation due to the direct and indirect influences of MCs on GCs, which in turn led to the GCs sparse firing. Thus, HEGCs impair DG pattern separation mainly through the GC-HEGC-GC circuit and therefore ablating HEGCs may be one of the effective ways to improve pattern separation in patients with epilepsy.
{"title":"Regulation of dentate gyrus pattern separation by hilus ectopic granule cells.","authors":"Haibin Yin, Xiaojuan Sun, Kai Yang, Yueheng Lan, Zeying Lu","doi":"10.1007/s11571-024-10204-y","DOIUrl":"10.1007/s11571-024-10204-y","url":null,"abstract":"<p><p>The dentate gyrus (DG) in hippocampus is reported to perform pattern separation, converting similar inputs into different outputs and thus avoiding memory interference. Previous studies have found that human and mice with epilepsy have significant pattern separation defects and a portion of adult-born granule cells (abGCs) migrate abnormally into the hilus, forming hilus ectopic granule cells (HEGCs). For the lack of relevant pathophysiological experiments, how HEGCs affect pattern separation remains unclear. Therefore, in this paper, we will construct the DG neuronal circuit and focus on discussing effects of HEGCs on pattern separation numerically. The obtained results showed that HEGCs impaired pattern separation efficiency since the sparse firing of granule cells (GCs) was destroyed. We provided new insights into the underlining mechanisms of HEGCs impairing pattern separation through analyzing two excitatory circuits: GC-HEGC-GC and GC-Mossy cell (MC)-GC, both of which involve the participation of HEGCs within the DG. It is revealed that the recurrent excitatory circuit GC-HEGC-GC formed by HEGCs mossy fiber sprouting significantly enhanced GCs activity, consequently disrupted pattern separation. However, another excitatory circuit had negligible effects on pattern separation due to the direct and indirect influences of MCs on GCs, which in turn led to the GCs sparse firing. Thus, HEGCs impair DG pattern separation mainly through the GC-HEGC-GC circuit and therefore ablating HEGCs may be one of the effective ways to improve pattern separation in patients with epilepsy.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"10"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11718051/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142969958","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The increasing adoption of wearable technologies highlights the potential of electroencephalogram (EEG) signals for biometric recognition. However, the intrinsic variability in cross-session EEG data presents substantial challenges in maintaining model stability and reliability. Moreover, the diversity within single-task protocols complicates achieving consistent and generalized model performance. To address these issues, we propose the Joint Disentangled Representation with Domain Adversarial Training (JDR-DAT) framework for EEG-based cross-session biometric recognition within single-task protocols. The JDR-DAT framework disentangles identity-specific features through mutual information estimation and incorporates domain adversarial training to enhance longitudinal robustness. Extensive experiments on longitudinal EEG data from two publicly available single-task protocol datasets-RSVP-based (Rapid Serial Visual Presentation) and MI-based (Motor Imagery)-demonstrate the efficacy of the JDR-DAT framework, with the proposed method achieving average accuracies of 85.83% and 96.72%, respectively.
{"title":"Joint disentangled representation and domain adversarial training for EEG-based cross-session biometric recognition in single-task protocols.","authors":"Honggang Liu, Xuanyu Jin, Dongjun Liu, Wanzeng Kong, Jiajia Tang, Yong Peng","doi":"10.1007/s11571-024-10214-w","DOIUrl":"10.1007/s11571-024-10214-w","url":null,"abstract":"<p><p>The increasing adoption of wearable technologies highlights the potential of electroencephalogram (EEG) signals for biometric recognition. However, the intrinsic variability in cross-session EEG data presents substantial challenges in maintaining model stability and reliability. Moreover, the diversity within single-task protocols complicates achieving consistent and generalized model performance. To address these issues, we propose the Joint Disentangled Representation with Domain Adversarial Training (JDR-DAT) framework for EEG-based cross-session biometric recognition within single-task protocols. The JDR-DAT framework disentangles identity-specific features through mutual information estimation and incorporates domain adversarial training to enhance longitudinal robustness. Extensive experiments on longitudinal EEG data from two publicly available single-task protocol datasets-RSVP-based (Rapid Serial Visual Presentation) and MI-based (Motor Imagery)-demonstrate the efficacy of the JDR-DAT framework, with the proposed method achieving average accuracies of 85.83% and 96.72%, respectively.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"31"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11757832/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143045783","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Zinc ions play a pivotal role in facilitating the development of cartilage in mice. Nevertheless, the precise underlying mechanism remains elusive. Our investigation was centered on elucidating the impact of zinc deficiency on cartilage maturation by modulating SUMO1 and UBC9 at both the protein and mRNA levels. We administered a regimen inducing zinc deficiency to gravid mice from E0.5 until euthanasia. Subsequently, we subjected the embryos to scrutiny employing HE, Safranin O staining and IHC. Primary chondrocytes were isolated from fetal mouse femoral condyles and utilized for Western blot analysis to discern the expression profiles of SUMO1, SUMO2/3, UBC9, SOX9, MMP13, Collagen II, RUNX2, and aggrecan. Furthermore, ATDC5 murine chondrocytes were subjected to treatment with ZnCl2, followed by RT-PCR assessment to scrutinize the expression levels of MMP13, Collagen II, RUNX2, and aggrecan. Additionally, we conducted Co-IP assays on ZnCl2-treated ATDC5 cells to explore the interaction between SOX9 and SUMO1. Our investigation unveiled that zinc deficiency led to a reduction in cartilage development, as evidenced by the HE results in fetal murine femur. Moreover, diminished expression levels of SUMO1 and UBC9 were observed in the IHC and Western blot results. Furthermore, Western blot and Co-IP assays revealed an augmented interaction between SOX9 and SUMO1, which was potentiated by ZnCl2 treatment. Significantly, mutations at the SUMOylation site of SOX9 resulted in alterations in the expression patterns of crucial chondrogenesis factors. This research underscores how zinc ions promote cartilage development through the modification of SOX9 by SUMO1.
{"title":"The Role of SUMO1 Modification of SOX9 in Cartilage Development Stimulated by Zinc Ions in Mice.","authors":"Na Xue, Jing Zhao, Jing Yin, Liang Liu, Zhong Yang, Shuchao Zhai, Xiyun Bian, Xiang Gao","doi":"10.1080/15476278.2025.2460269","DOIUrl":"10.1080/15476278.2025.2460269","url":null,"abstract":"<p><p>Zinc ions play a pivotal role in facilitating the development of cartilage in mice. Nevertheless, the precise underlying mechanism remains elusive. Our investigation was centered on elucidating the impact of zinc deficiency on cartilage maturation by modulating SUMO1 and UBC9 at both the protein and mRNA levels. We administered a regimen inducing zinc deficiency to gravid mice from E0.5 until euthanasia. Subsequently, we subjected the embryos to scrutiny employing HE, Safranin O staining and IHC. Primary chondrocytes were isolated from fetal mouse femoral condyles and utilized for Western blot analysis to discern the expression profiles of SUMO1, SUMO2/3, UBC9, SOX9, MMP13, Collagen II, RUNX2, and aggrecan. Furthermore, ATDC5 murine chondrocytes were subjected to treatment with ZnCl<sub>2</sub>, followed by RT-PCR assessment to scrutinize the expression levels of MMP13, Collagen II, RUNX2, and aggrecan. Additionally, we conducted Co-IP assays on ZnCl<sub>2</sub>-treated ATDC5 cells to explore the interaction between SOX9 and SUMO1. Our investigation unveiled that zinc deficiency led to a reduction in cartilage development, as evidenced by the HE results in fetal murine femur. Moreover, diminished expression levels of SUMO1 and UBC9 were observed in the IHC and Western blot results. Furthermore, Western blot and Co-IP assays revealed an augmented interaction between SOX9 and SUMO1, which was potentiated by ZnCl<sub>2</sub> treatment. Significantly, mutations at the SUMOylation site of SOX9 resulted in alterations in the expression patterns of crucial chondrogenesis factors. This research underscores how zinc ions promote cartilage development through the modification of SOX9 by SUMO1.</p>","PeriodicalId":19596,"journal":{"name":"Organogenesis","volume":"21 1","pages":"2460269"},"PeriodicalIF":1.6,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11801356/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143190193","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Maize is a major food crop in China, and drought is one of the major abiotic stresses that threaten the growth and development of the crop, seriously affecting the crop yield. 4-coumaric acid coenzyme A ligase (4CL) is a key enzyme in the phenylpropane metabolic pathway, which can regulate the lignin content of the plant and play an important role in the plant's resistance to drought stress, plays an important role in plant resistance to drought stress. In the present study, we screened the differentially expressed up-regulated gene Zm4CL-like9 under drought stress by pre-transcriptome sequencing data (PRJNA793522) in the laboratory, and analyzed the significant up-regulation of Zm4CL-like9 gene in roots under drought stress by qRT-PCR(Real-Time Quantitative Reverse Transcription PCR). The results of prokaryotic expression experiments showed that the protein encoded by the Zm4CL-like9 gene was able to be expressed in prokaryotic cells and could effectively improve the drought tolerance of E. coli. Phenotypic analysis of transgenic Arabidopsis plants under drought stress revealed that seed germination rate, root length, and plant survival after drought rehydration were significantly higher in transgenic Zm4CL-like9 Arabidopsis compared with wild-type Arabidopsis; physiological and biochemical indexes revealed that peroxidase activity, proline (Pro) content, and chlorophyll content were significantly higher in transgenic Arabidopsis compared with wild-type Arabidopsis. Under drought stress, the expression of drought-related genes was significantly up-regulated in transgenic Arabidopsis compared with wild-type Arabidopsis. Taken together, the Zm4CL-like9 gene enhances plant resistance to drought stress by reducing reactive oxygen species accumulation in plants.
{"title":"Maize 4-coumarate coenzyme A ligase <i>Zm4CL-like9</i> gene positively regulates drought stress response in <i>Arabidopsis thaliana</i>.","authors":"Jiayi Fan, Zhipeng Luo, Yuankai Wang, Peng Jiao, Qingxu Wang, Yuntao Dai, Shuyan Guan, Yiyong Ma, Huiwei Yu, Siyan Liu","doi":"10.1080/21645698.2025.2469942","DOIUrl":"https://doi.org/10.1080/21645698.2025.2469942","url":null,"abstract":"<p><p>Maize is a major food crop in China, and drought is one of the major abiotic stresses that threaten the growth and development of the crop, seriously affecting the crop yield. 4-coumaric acid coenzyme A ligase (<i>4CL</i>) is a key enzyme in the phenylpropane metabolic pathway, which can regulate the lignin content of the plant and play an important role in the plant's resistance to drought stress, plays an important role in plant resistance to drought stress. In the present study, we screened the differentially expressed up-regulated gene <i>Zm4CL-like9</i> under drought stress by pre-transcriptome sequencing data (PRJNA793522) in the laboratory, and analyzed the significant up-regulation of <i>Zm4CL-like9</i> gene in roots under drought stress by qRT-PCR(Real-Time Quantitative Reverse Transcription PCR). The results of prokaryotic expression experiments showed that the protein encoded by the <i>Zm4CL-like9</i> gene was able to be expressed in prokaryotic cells and could effectively improve the drought tolerance of E. coli. Phenotypic analysis of transgenic <i>Arabidopsis</i> plants under drought stress revealed that seed germination rate, root length, and plant survival after drought rehydration were significantly higher in transgenic <i>Zm4CL-like9 Arabidopsis</i> compared with wild-type <i>Arabidopsis</i>; physiological and biochemical indexes revealed that peroxidase activity, proline (Pro) content, and chlorophyll content were significantly higher in transgenic <i>Arabidopsis</i> compared with wild-type <i>Arabidopsis</i>. Under drought stress, the expression of drought-related genes was significantly up-regulated in transgenic <i>Arabidopsis</i> compared with wild-type <i>Arabidopsis</i>. Taken together, the <i>Zm4CL-like9</i> gene enhances plant resistance to drought stress by reducing reactive oxygen species accumulation in plants.</p>","PeriodicalId":54282,"journal":{"name":"Gm Crops & Food-Biotechnology in Agriculture and the Food Chain","volume":"16 1","pages":"199-215"},"PeriodicalIF":4.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143484741","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brain signals and muscle movements have been analyzed using electroencephalogram (EEG) data in several studies. EEG signals contain a lot of noise, such as electromyographic (EMG) waves. Further studies have been done to improve the quality of the results, though it is thought that the combination of these two signals can lead to a significant improvement in the synergistic analysis of muscle movements and muscle connections. Using graph theory, this study examined the interaction of EMG and EEG signals during hand movement and estimated the synergy between muscle and brain signals. Mapping of the brain diagram was also developed to reconstruct the muscle signals from the muscle connections in the brain diagram. The proposed method included noise removal from EEG and EMG signals, graph feature analysis from EEG, and synergy calculation from EMG. Two methods were used to estimate synergy. In the first method, after calculating the brain connections, the features of the communication graph were extracted and then synergy estimating was made with neural networks. In the second method, a convolutional network created a transition from the matrix of brain connections to the synergistic EMG signal. This study reached the high correlation values of 99.8% and maximum MSE error of 0.0084. Compared to other graph-based methods, this method based on regression analysis had a very significant performance. This research can lead to the improvement of rehabilitation methods and brain-computer interfaces.
{"title":"Brain analysis to approach human muscles synergy using deep learning.","authors":"Elham Samadi, Fereidoun Nowshiravan Rahatabad, Ali Motie Nasrabadi, Nader Jafarnia Dabanlou","doi":"10.1007/s11571-025-10228-y","DOIUrl":"https://doi.org/10.1007/s11571-025-10228-y","url":null,"abstract":"<p><p>Brain signals and muscle movements have been analyzed using electroencephalogram (EEG) data in several studies. EEG signals contain a lot of noise, such as electromyographic (EMG) waves. Further studies have been done to improve the quality of the results, though it is thought that the combination of these two signals can lead to a significant improvement in the synergistic analysis of muscle movements and muscle connections. Using graph theory, this study examined the interaction of EMG and EEG signals during hand movement and estimated the synergy between muscle and brain signals. Mapping of the brain diagram was also developed to reconstruct the muscle signals from the muscle connections in the brain diagram. The proposed method included noise removal from EEG and EMG signals, graph feature analysis from EEG, and synergy calculation from EMG. Two methods were used to estimate synergy. In the first method, after calculating the brain connections, the features of the communication graph were extracted and then synergy estimating was made with neural networks. In the second method, a convolutional network created a transition from the matrix of brain connections to the synergistic EMG signal. This study reached the high correlation values of 99.8% and maximum MSE error of 0.0084. Compared to other graph-based methods, this method based on regression analysis had a very significant performance. This research can lead to the improvement of rehabilitation methods and brain-computer interfaces.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"44"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11846801/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143491021","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}