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Multi-level cognitive state classification of learners using complex brain networks and interpretable machine learning. 使用复杂脑网络和可解释机器学习的学习者多层次认知状态分类。
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-03 DOI: 10.1007/s11571-024-10203-z
Xiuling He, Yue Li, Xiong Xiao, Yingting Li, Jing Fang, Ruijie Zhou

Identifying the cognitive state can help educators understand the evolving thought processes of learners, and it is important in promoting the development of higher-order thinking skills (HOTS). Cognitive neuroscience research identifies cognitive states by designing experimental tasks and recording electroencephalography (EEG) signals during task performance. However, most of the previous studies primarily concentrated on extracting features from individual channels in single-type tasks, ignoring the interconnection across channels. In this study, three learning activities (i.e., video watching activity, keyword extracting activity, and essay creating activity) were designed based on a revised Bloom's taxonomy and the Interactive-Constructive-Active-Passive framework and used with 31 college students. The EEG signals were recorded when they were engaged in these activities. First, whole-brain network temporal dynamics were characterized by EEG microstate sequence analysis. Such dynamic changes rely on learning activity and corresponding functional brain systems. Subsequently, phase locking value was used to construct synchrony-based functional brain networks. The network characteristics were extracted to be inputted into different machine learning classifiers: Support Vector Machine, K-Nearest Neighbour, Random Forest, and eXtreme Gradient Boosting (XGBoost). XGBoost showed superior performance in the classification of cognitive states, with an accuracy of 88.07%. Furthermore, SHapley Additive exPlanations (SHAP) was adopted to reveal the connections between different brain regions that contributed to the classification of cognitive state. SHAP analysis reveals that the connections in the frontal, temporal, and central regions are most important for the high cognitive state. Collectively, this study may provide further evidence for educators to design cognitive-guided instructional activities to enhance learners' HOTS.

识别认知状态可以帮助教育者理解学习者思维过程的演变,对促进高阶思维技能(HOTS)的发展至关重要。认知神经科学研究通过设计实验任务和记录任务执行过程中的脑电图信号来识别认知状态。然而,以往的研究大多集中在单一类型任务中单个通道的特征提取上,忽略了通道之间的相互联系。本研究基于修改后的Bloom分类法和互动-建构-主动-被动框架,设计了视频观看、关键词提取和作文创作三个学习活动,并对31名大学生进行了实验。当他们从事这些活动时,脑电图信号被记录下来。首先,利用脑电微态序列分析表征全脑网络时间动态。这种动态变化依赖于学习活动和相应的脑功能系统。随后,利用锁相值构建基于同步的脑功能网络。提取网络特征并输入不同的机器学习分类器:支持向量机、k近邻、随机森林和极端梯度增强(XGBoost)。XGBoost在认知状态分类方面表现优异,准确率达88.07%。此外,采用SHapley加性解释(SHapley Additive explanatory, SHAP)揭示了不同脑区之间的联系,这些联系有助于认知状态的分类。SHAP分析显示,大脑额叶、颞叶和中央区域的连接对高认知状态最为重要。综上所述,本研究可为教育者设计认知引导的教学活动以提高学习者的HOTS提供进一步的证据。
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引用次数: 0
Research and developmental strategies to hasten the improvement of orphan crops. 加快孤儿作物改良的研究和发展战略。
IF 4.5 2区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2024-12-24 DOI: 10.1080/21645698.2024.2423987
Ufuoma Akpojotor, Olubusayo Oluwole, Olaniyi Oyatomi, Rajneesh Paliwal, Michael Abberton

To feed the world's expanding population, crop breeders need to increase agricultural productivity and expand major crops base. Orphan crops are indigenously important crops with great potential because they are climate resilient, highly nutritious, contain nutraceutical compounds, and can improve the livelihood of smallholder farmers and consumers, but they have received little or no scientific attention. This review article examines several research and developmental strategies for hastening the improvement of these crops so that they can effectively play their role in securing food and nutrition. The integration of both research and developmental approaches will open up modern opportunities for crop improvement. We summarized ways in which advanced tools in phenotyping and genotyping, using high-throughput processes, can be used to accelerate their improvement. Finally, we suggest roles the genebanks can play in improving orphan crops, as the utilization of plant genetic resources is important for the genetic improvement of a crop.

为了养活世界上不断增长的人口,作物育种者需要提高农业生产力,扩大主要作物基础。孤儿作物是具有巨大潜力的地方重要作物,因为它们具有气候适应能力、高营养、含有营养化合物,并且可以改善小农和消费者的生计,但它们很少或根本没有得到科学关注。本文综述了加快这些作物改良的几种研究和开发策略,以使它们能够有效地发挥其在保障粮食和营养方面的作用。研究和发展方法的结合将为作物改良开辟现代机会。我们总结了在表型和基因分型的先进工具,使用高通量的过程,可以用来加速他们的改进方法。由于植物遗传资源的利用对作物的遗传改良至关重要,因此我们建议基因库在孤儿作物改良中发挥重要作用。
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引用次数: 0
Cognitive neurodynamic approaches to adaptive signal processing in wireless sensor networks. 无线传感器网络中自适应信号处理的认知神经动力学方法。
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-09 DOI: 10.1007/s11571-024-10190-1
K G Shanthi, A Mary Joy Kinol, S Rukmani Devi, K Kannan

In recent years, Wireless Sensor Networks (WSN) have become vital because of their versatility in numerous applications. Nevertheless, the attain problems like inherent noise, and limited node computation capabilities, result in reduced sensor node lifespan as well as enhanced power consumption. To tackle such problems, this study develops a Modified-Distributed Arithmetic-Offset Binary Coding-based Adaptive Finite Impulse Response (MDA-OBC based AFIR) framework. By leveraging Modified Distributed Arithmetic (MDA) which optimizes arithmetic operations by replacing the multipliers with lookup tables (LUT) hence minimizing energy consumption as well as computational complexity. Offset Binary Coding (OBC) enhanced the efficiency of data transmission by minimizing the data representation overhead. In addition to this, the adaptive strategy is incorporated with the Adaptive Finite Impulse Response (AFIR) framework permitting the filters to dynamically adjust to varying signal characteristics, thus offering high noise suppression and low distortion rates. Comprehensive simulations and comparative analysis validate the effectiveness of the proposed MDA-OBC-based AFIR method. The proposed method attained a lower energy consumption of 1.5 J and 130 W power consumption than the traditional implementations, resulting in significant energy efficiency and data transmission in signal preprocessing and noise suppression in WSNs.

近年来,无线传感器网络(WSN)因其在众多应用中的多功能性而变得至关重要。然而,由于存在固有噪声和节点计算能力有限等问题,导致传感器节点寿命缩短、功耗增加。为解决这些问题,本研究开发了基于修正分布式算术-偏移二进制编码的自适应有限脉冲响应(MDA-OBC based AFIR)框架。通过利用修正分布式算法(MDA)优化算术运算,用查找表(LUT)代替乘法器,从而最大限度地降低能耗和计算复杂度。偏移二进制编码(OBC)通过最大限度地减少数据表示开销,提高了数据传输效率。此外,自适应策略还采用了自适应有限脉冲响应(AFIR)框架,允许滤波器根据不同的信号特征进行动态调整,从而提供高噪声抑制和低失真率。综合模拟和比较分析验证了基于 MDA-OBC 的 AFIR 方法的有效性。与传统方法相比,所提出的方法能耗低至 1.5 焦耳,功耗低至 130 瓦,从而在 WSN 信号预处理和噪声抑制方面显著提高了能效和数据传输效率。
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引用次数: 0
BISNN: bio-information-fused spiking neural networks for enhanced EEG-based emotion recognition.
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-03-22 DOI: 10.1007/s11571-025-10239-9
Hongze Sun, Shifeng Mao, Wuque Cai, Yan Cui, Duo Chen, Dezhong Yao, Daqing Guo

Spiking neural networks (SNNs), known for their rich spatio-temporal dynamics, have recently gained considerable attention in EEG-based emotion recognition. However, conventional model training approaches often fail to fully exploit the capabilities of SNNs, posing challenges for effective EEG data analysis. In this work, we propose a novel bio-information-fused SNN (BISNN) model to enhance EEG-based emotion recognition. The BISNN model incorporates biologically plausible intrinsic parameters into spiking neurons and is initialized with a structurally equivalent pre-trained ANN model. By constructing a bio-information-fused loss function, the BISNN model enables simultaneous training under dual constraints. Extensive experiments on benchmark EEG-based emotion datasets demonstrate that the BISNN model achieves competitive performance compared to state-of-the-art methods. Additionally, ablation studies investigating various components further elucidate the mechanisms underlying the model's effectiveness and evolution, aligning well with previous findings.

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引用次数: 0
Regulation of dentate gyrus pattern separation by hilus ectopic granule cells. 门部异位颗粒细胞对齿状回模式分离的调控。
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-09 DOI: 10.1007/s11571-024-10204-y
Haibin Yin, Xiaojuan Sun, Kai Yang, Yueheng Lan, Zeying Lu

The dentate gyrus (DG) in hippocampus is reported to perform pattern separation, converting similar inputs into different outputs and thus avoiding memory interference. Previous studies have found that human and mice with epilepsy have significant pattern separation defects and a portion of adult-born granule cells (abGCs) migrate abnormally into the hilus, forming hilus ectopic granule cells (HEGCs). For the lack of relevant pathophysiological experiments, how HEGCs affect pattern separation remains unclear. Therefore, in this paper, we will construct the DG neuronal circuit and focus on discussing effects of HEGCs on pattern separation numerically. The obtained results showed that HEGCs impaired pattern separation efficiency since the sparse firing of granule cells (GCs) was destroyed. We provided new insights into the underlining mechanisms of HEGCs impairing pattern separation through analyzing two excitatory circuits: GC-HEGC-GC and GC-Mossy cell (MC)-GC, both of which involve the participation of HEGCs within the DG. It is revealed that the recurrent excitatory circuit GC-HEGC-GC formed by HEGCs mossy fiber sprouting significantly enhanced GCs activity, consequently disrupted pattern separation. However, another excitatory circuit had negligible effects on pattern separation due to the direct and indirect influences of MCs on GCs, which in turn led to the GCs sparse firing. Thus, HEGCs impair DG pattern separation mainly through the GC-HEGC-GC circuit and therefore ablating HEGCs may be one of the effective ways to improve pattern separation in patients with epilepsy.

据报道,海马中的齿状回(DG)执行模式分离,将相似的输入转换为不同的输出,从而避免记忆干扰。既往研究发现,人和小鼠癫痫患者存在明显的模式分离缺陷,部分成体颗粒细胞(abGCs)异常迁移至脑门,形成脑门异位颗粒细胞(HEGCs)。由于缺乏相关的病理生理实验,HEGCs如何影响模式分离尚不清楚。因此,在本文中,我们将构建DG神经元回路,重点讨论hegc对模式分离的影响。结果表明,HEGCs破坏了颗粒细胞的稀疏放电,从而降低了模式分离效率。通过分析GC-HEGC-GC和GC-Mossy cell (MC)-GC这两种兴奋性回路,我们对hegc损害模式分离的潜在机制提供了新的见解,这两种兴奋性回路都涉及到hegc参与DG。结果表明,由hegc苔藓纤维发芽形成的循环兴奋回路GC-HEGC-GC显著增强了gc活性,从而破坏了模式分离。然而,另一种兴奋回路对模式分离的影响可以忽略不计,这是由于MCs对GCs的直接和间接影响,从而导致GCs稀疏放电。因此,HEGCs主要通过GC-HEGC-GC回路损害DG模式分离,因此,消融HEGCs可能是改善癫痫患者模式分离的有效方法之一。
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引用次数: 0
Joint disentangled representation and domain adversarial training for EEG-based cross-session biometric recognition in single-task protocols.
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-01-23 DOI: 10.1007/s11571-024-10214-w
Honggang Liu, Xuanyu Jin, Dongjun Liu, Wanzeng Kong, Jiajia Tang, Yong Peng

The increasing adoption of wearable technologies highlights the potential of electroencephalogram (EEG) signals for biometric recognition. However, the intrinsic variability in cross-session EEG data presents substantial challenges in maintaining model stability and reliability. Moreover, the diversity within single-task protocols complicates achieving consistent and generalized model performance. To address these issues, we propose the Joint Disentangled Representation with Domain Adversarial Training (JDR-DAT) framework for EEG-based cross-session biometric recognition within single-task protocols. The JDR-DAT framework disentangles identity-specific features through mutual information estimation and incorporates domain adversarial training to enhance longitudinal robustness. Extensive experiments on longitudinal EEG data from two publicly available single-task protocol datasets-RSVP-based (Rapid Serial Visual Presentation) and MI-based (Motor Imagery)-demonstrate the efficacy of the JDR-DAT framework, with the proposed method achieving average accuracies of 85.83% and 96.72%, respectively.

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引用次数: 0
Maize 4-coumarate coenzyme A ligase Zm4CL-like9 gene positively regulates drought stress response in Arabidopsis thaliana.
IF 4.5 2区 农林科学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-02-23 DOI: 10.1080/21645698.2025.2469942
Jiayi Fan, Zhipeng Luo, Yuankai Wang, Peng Jiao, Qingxu Wang, Yuntao Dai, Shuyan Guan, Yiyong Ma, Huiwei Yu, Siyan Liu

Maize is a major food crop in China, and drought is one of the major abiotic stresses that threaten the growth and development of the crop, seriously affecting the crop yield. 4-coumaric acid coenzyme A ligase (4CL) is a key enzyme in the phenylpropane metabolic pathway, which can regulate the lignin content of the plant and play an important role in the plant's resistance to drought stress, plays an important role in plant resistance to drought stress. In the present study, we screened the differentially expressed up-regulated gene Zm4CL-like9 under drought stress by pre-transcriptome sequencing data (PRJNA793522) in the laboratory, and analyzed the significant up-regulation of Zm4CL-like9 gene in roots under drought stress by qRT-PCR(Real-Time Quantitative Reverse Transcription PCR). The results of prokaryotic expression experiments showed that the protein encoded by the Zm4CL-like9 gene was able to be expressed in prokaryotic cells and could effectively improve the drought tolerance of E. coli. Phenotypic analysis of transgenic Arabidopsis plants under drought stress revealed that seed germination rate, root length, and plant survival after drought rehydration were significantly higher in transgenic Zm4CL-like9 Arabidopsis compared with wild-type Arabidopsis; physiological and biochemical indexes revealed that peroxidase activity, proline (Pro) content, and chlorophyll content were significantly higher in transgenic Arabidopsis compared with wild-type Arabidopsis. Under drought stress, the expression of drought-related genes was significantly up-regulated in transgenic Arabidopsis compared with wild-type Arabidopsis. Taken together, the Zm4CL-like9 gene enhances plant resistance to drought stress by reducing reactive oxygen species accumulation in plants.

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引用次数: 0
Correction. 更正。
IF 4.5 3区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-01 Epub Date: 2025-03-14 DOI: 10.1080/21691401.2025.2478352
{"title":"Correction.","authors":"","doi":"10.1080/21691401.2025.2478352","DOIUrl":"10.1080/21691401.2025.2478352","url":null,"abstract":"","PeriodicalId":8736,"journal":{"name":"Artificial Cells, Nanomedicine, and Biotechnology","volume":"53 1","pages":"138"},"PeriodicalIF":4.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143623276","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Respiratory modulation of beta corticomuscular coherence in isometric hand movements.
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-03-22 DOI: 10.1007/s11571-025-10245-x
Zhibin Li, Jingyao Sun, Tianyu Jia, Linhong Ji, Chong Li

Respiration is a fundamental physiological function in humans, often synchronized with movement to enhance performance and efficiency. Recent studies have underscored the modulatory effects of respiratory rhythms on brain oscillations and various behavioral responses, including sensorimotor processes. In light of this connection, our study aimed to investigate the influence of different respiratory patterns on beta corticomuscular coherence (CMC) during isometric hand flexion and extension. Utilizing electroencephalogram (EEG) and surface electromyography (sEMG), we examined three breathing conditions: normal breathing, deep inspiration, and deep expiration. Two experimental protocols were employed: the first experiment required participants to simultaneously breathe and exert force, while the other involved maintaining a constant force while varying breathing patterns. The results revealed that deep inspiration significantly enhanced beta CMC during respiration-synchronized tasks, whereas normal breathing resulted in higher CMC compared to deep respiration during sustained force exertion. In the second experiment, beta CMC was cyclically modulated by respiratory phase across all breathing conditions. The difference in the outcomes from the two protocols demonstrated a task-specific modulation of respiration on motor control. Overall, these findings indicate the complex dynamics of respiration-related effects on corticomuscular neural communication and provide valuable insights into the mechanisms underpinning the coupling between respiration and motor function.

Supplementary information: The online version contains supplementary material available at 10.1007/s11571-025-10245-x.

{"title":"Respiratory modulation of beta corticomuscular coherence in isometric hand movements.","authors":"Zhibin Li, Jingyao Sun, Tianyu Jia, Linhong Ji, Chong Li","doi":"10.1007/s11571-025-10245-x","DOIUrl":"10.1007/s11571-025-10245-x","url":null,"abstract":"<p><p>Respiration is a fundamental physiological function in humans, often synchronized with movement to enhance performance and efficiency. Recent studies have underscored the modulatory effects of respiratory rhythms on brain oscillations and various behavioral responses, including sensorimotor processes. In light of this connection, our study aimed to investigate the influence of different respiratory patterns on beta corticomuscular coherence (CMC) during isometric hand flexion and extension. Utilizing electroencephalogram (EEG) and surface electromyography (sEMG), we examined three breathing conditions: normal breathing, deep inspiration, and deep expiration. Two experimental protocols were employed: the first experiment required participants to simultaneously breathe and exert force, while the other involved maintaining a constant force while varying breathing patterns. The results revealed that deep inspiration significantly enhanced beta CMC during respiration-synchronized tasks, whereas normal breathing resulted in higher CMC compared to deep respiration during sustained force exertion. In the second experiment, beta CMC was cyclically modulated by respiratory phase across all breathing conditions. The difference in the outcomes from the two protocols demonstrated a task-specific modulation of respiration on motor control. Overall, these findings indicate the complex dynamics of respiration-related effects on corticomuscular neural communication and provide valuable insights into the mechanisms underpinning the coupling between respiration and motor function.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s11571-025-10245-x.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"54"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11929664/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143699812","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Brain analysis to approach human muscles synergy using deep learning.
IF 3.1 3区 工程技术 Q2 NEUROSCIENCES Pub Date : 2025-12-01 Epub Date: 2025-02-22 DOI: 10.1007/s11571-025-10228-y
Elham Samadi, Fereidoun Nowshiravan Rahatabad, Ali Motie Nasrabadi, Nader Jafarnia Dabanlou

Brain signals and muscle movements have been analyzed using electroencephalogram (EEG) data in several studies. EEG signals contain a lot of noise, such as electromyographic (EMG) waves. Further studies have been done to improve the quality of the results, though it is thought that the combination of these two signals can lead to a significant improvement in the synergistic analysis of muscle movements and muscle connections. Using graph theory, this study examined the interaction of EMG and EEG signals during hand movement and estimated the synergy between muscle and brain signals. Mapping of the brain diagram was also developed to reconstruct the muscle signals from the muscle connections in the brain diagram. The proposed method included noise removal from EEG and EMG signals, graph feature analysis from EEG, and synergy calculation from EMG. Two methods were used to estimate synergy. In the first method, after calculating the brain connections, the features of the communication graph were extracted and then synergy estimating was made with neural networks. In the second method, a convolutional network created a transition from the matrix of brain connections to the synergistic EMG signal. This study reached the high correlation values of 99.8% and maximum MSE error of 0.0084. Compared to other graph-based methods, this method based on regression analysis had a very significant performance. This research can lead to the improvement of rehabilitation methods and brain-computer interfaces.

{"title":"Brain analysis to approach human muscles synergy using deep learning.","authors":"Elham Samadi, Fereidoun Nowshiravan Rahatabad, Ali Motie Nasrabadi, Nader Jafarnia Dabanlou","doi":"10.1007/s11571-025-10228-y","DOIUrl":"10.1007/s11571-025-10228-y","url":null,"abstract":"<p><p>Brain signals and muscle movements have been analyzed using electroencephalogram (EEG) data in several studies. EEG signals contain a lot of noise, such as electromyographic (EMG) waves. Further studies have been done to improve the quality of the results, though it is thought that the combination of these two signals can lead to a significant improvement in the synergistic analysis of muscle movements and muscle connections. Using graph theory, this study examined the interaction of EMG and EEG signals during hand movement and estimated the synergy between muscle and brain signals. Mapping of the brain diagram was also developed to reconstruct the muscle signals from the muscle connections in the brain diagram. The proposed method included noise removal from EEG and EMG signals, graph feature analysis from EEG, and synergy calculation from EMG. Two methods were used to estimate synergy. In the first method, after calculating the brain connections, the features of the communication graph were extracted and then synergy estimating was made with neural networks. In the second method, a convolutional network created a transition from the matrix of brain connections to the synergistic EMG signal. This study reached the high correlation values of 99.8% and maximum MSE error of 0.0084. Compared to other graph-based methods, this method based on regression analysis had a very significant performance. This research can lead to the improvement of rehabilitation methods and brain-computer interfaces.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"44"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11846801/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143491021","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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