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Health, microbiota, and water quality analysis: A case study in a commercial recirculating aquaculture system for yellowtail kingfish (Seriola lalandi). 健康、微生物群和水质分析:黄尾王鱼商业循环水养殖系统的案例研究。
IF 3.9 1区 农林科学 Q1 FISHERIES Pub Date : 2026-10-30 Epub Date: 2025-06-19 DOI: 10.1016/j.aquaculture.2025.742851
Katerina Loufi , Julia Hassa , Eric Hernández , Marit Stormoen , Deni Ribičić , Stamatios Kapasakis , Tobias Busche , Jörn Kalinowski , Pavlos Makridis , Roman Netzer , Elia Ciani
This study describes the temporal and spatial dynamics of microbiota composition, water quality parameters and fish health status in a commercial Recirculating Aquaculture System (RAS) for yellowtail kingfish (Seriola lalandi) spanning from April to November 2021. Water quality was effectively controlled, with key parameters such as CO2, pH, temperature, nitrogen compounds and hydrogen sulfide (H2S) consistently maintained within safety thresholds reported in the literature. Microbiota composition was analyzed in various fish tissues and RAS components using 16S rRNA gene amplicon sequencing. The predominant genera in RAS samples (tank water, tank wall biofilm, biofilter biofilm, and denitrification unit) included Erythrobacter, Glaciecola, and Nitrospira. In contrast, fish tissue samples (gills, intestine, and skin) were mainly colonized by Aliivibrio, Pseudomonas, and an uncultured genus from the Mycoplasmataceae family. Cluster analysis revealed similarities in bacterial composition between tank water and external fish tissues (skin and gills), with variations over time corresponding to changes in water parameters. Digital PCR assays were developed to target specific fish pathogens such as Vibrio harveyi, Vibrio anguillarum, and Photobacterium damselae piscicida, revealing low or undetectable pathogen levels throughout most of the monitoring period. In tank water, these species showed the highest concentration in August and September. A Multiparametric Semi-quantitative Scoring System (MSSS) was developed for histological examination of gills, intestine, liver, spleen, and kidney. Increased inflammation coincided with higher pathogen presence in the water. However, no clinical signs of vibriosis or pasteurellosis were detected, indicating overall good fish health and a robust immune system. This integrated approach - combining innovative pathogen-specific digital PCR assays, MSSS histological scoring and microbiota profiling offers a valuable framework for monitoring fish health and optimizing production quality in kingfish farming within RAS environments.
本研究描述了2021年4 - 11月商业循循环养殖系统(RAS)中黄尾王鱼(Seriola lalandi)微生物群组成、水质参数和鱼类健康状况的时空动态。水质得到有效控制,CO2、pH、温度、氮化合物、硫化氢(H2S)等关键参数始终保持在文献报道的安全阈值范围内。采用16S rRNA基因扩增子测序,分析了不同鱼类组织和RAS组分的微生物群组成。RAS样品中的优势属(池水、池壁生物膜、生物过滤器生物膜和反硝化单元)包括红杆菌、冰原菌和硝化螺旋菌。相比之下,鱼类组织样本(鳃、肠和皮肤)主要由Aliivibrio、假单胞菌和支原体科的一个未培养属定植。聚类分析显示,水箱水和外部鱼组织(皮肤和鳃)之间的细菌组成相似,随时间的变化对应于水参数的变化。开发了针对特定鱼类病原体的数字PCR分析,如哈威弧菌、鳗弧菌和豆色光杆菌,在大部分监测期间显示出低或无法检测到的病原体水平。在水箱水中,这些物种在8月和9月的浓度最高。采用多参数半定量评分系统(MSSS)对鳃、肠、肝、脾和肾进行组织学检查。炎症的增加与水中较高的病原体含量相吻合。然而,没有检测到弧菌病或巴氏杆菌病的临床症状,表明鱼类总体健康状况良好,免疫系统强大。这种综合方法结合了创新的病原体特异性数字PCR分析、MSSS组织学评分和微生物群分析,为在RAS环境中监测鱼类健康和优化王鱼养殖的生产质量提供了有价值的框架。
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引用次数: 0
Proline improves intestinal damage induced by hibernation stress through Nrf2/Ho-1/p65 signaling pathway in Pelodiscus sinensis 脯氨酸通过Nrf2/Ho-1/p65信号通路改善华家参冬眠应激引起的肠道损伤
IF 3.9 1区 农林科学 Q1 FISHERIES Pub Date : 2026-10-30 Epub Date: 2025-06-24 DOI: 10.1016/j.aquaculture.2025.742891
Jiaxiang Luo , Jiacheng Pan , Haoran Song , Gaoliang Cao , Xinyi Zhang , Wei Wang , Guoying Qian , Haiqi Zhang , Caiyan Li
The object of this study was to assess the impact of proline (Pro) supplementation on mediating hibernation induced intestinal barrier dysfunction in turtle and to explore the underling mechanisms. Pelodiscus sinensis were given a simulated hibernation experiment for 4 weeks, followed by feeding the control (Con) diet and Pro diet for 4 weeks. Results showed that the turtles fed of Pro diet significantly enhanced the feed intake and intestinal Pro deposition, while increased the villus height, crypt depth and the ratio of villus height to crypt depth in intestine of turtles. Pro significantly facilitated the conversion of intestinal type II and III goblet cells to type I goblet cells, and markedly upregulated the expression of muc-2, zo-1, claudin-1, claudin-3, the key gene associated with the intestinal barrier, as well as restrained the expression of mlck. Moreover, Tunel-immunohistochemical analysis showed that Pro diet significantly reduced the number of intestinal late apoptotic cell, and levels of pro-apoptosis and pro-inflammation related genes in Pro treatment were significantly lowered than those in Con treatment. Furthermore, Nf-κB p65 serves as a pivotal transcription factor in activating apoptosis and inflammation, and its expression can be regulated by Nrf2/HO-1. Pro significantly upregulated the protein levels of total-Nrf2, nuclear-Nrf2, and HO-1, while simultaneously suppressing the phosphorylation of NF-κB p65 in the intestine of turtles. These findings revealed the underling mechanism of action of Pro in hibernation stress of P. sinensis, confirming that Pro increased Nrf2 and HO-1 that, which subsequently suppresses the Nf-κB p65 in intestine thereby reducing inflammation and apoptosis, and thus alleviated intestinal tight junction dysfunction and barrier damage of P. sinensis caused by hibernation.
本研究的目的是评估补充脯氨酸(Pro)对海龟冬眠诱导的肠道屏障功能障碍的影响,并探讨其可能的机制。采用模拟冬眠试验4周,饲喂对照(Con)日粮和Pro日粮4周。结果表明,饲喂Pro饲粮显著提高了龟的采食量和肠道Pro沉积,增加了龟肠绒毛高度、隐窝深度和绒毛高度/隐窝深度之比。Pro显著促进肠道II型和III型杯状细胞向I型杯状细胞的转化,显著上调肠屏障相关关键基因muc2、zo-1、claudin-1、claudin-3的表达,抑制mlck的表达。tunel -免疫组化分析显示,Pro组大鼠肠道晚期凋亡细胞数量显著减少,Pro组促凋亡和促炎症相关基因水平显著低于Con组。此外,Nf-κB p65是激活细胞凋亡和炎症的关键转录因子,其表达可受Nrf2/HO-1调控。Pro显著上调了海龟肠道中total-Nrf2、nuclear-Nrf2和HO-1蛋白水平,同时抑制了NF-κB p65的磷酸化。这些发现揭示了Pro在中华绒斛冬眠应激中的潜在作用机制,证实了Pro通过增加Nrf2和HO-1,从而抑制肠道内Nf-κB p65,从而减少炎症和细胞凋亡,从而缓解冬眠引起的中华绒斛肠道紧密连接功能障碍和屏障损伤。
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引用次数: 0
Two CqCofilins inhibit WSSV infection by binding with Cqβ-actin cytoskeleton in Cherax quadricarinatus 两种CqCofilins通过结合cqβ -肌动蛋白细胞骨架来抑制白鲑感染WSSV
IF 3.9 1区 农林科学 Q1 FISHERIES Pub Date : 2026-10-30 Epub Date: 2025-06-25 DOI: 10.1016/j.aquaculture.2025.742894
Wei-dong Li , Jiao-yang Xu , Chuang Cui , Hai-peng Liu
Cofilin, a key regulator of the cytoskeleton, orchestrates multiple critical cellular processes, including endocytosis, cell migration, and adhesion, by facilitating the depolymerization of actin filaments. Based on our prior transcriptomic library of differentially expressed genes from the hematopoietic tissue (Hpt) cells of Cherax quadricarinatus, the expression profiles of Cofilin1 and Cofilin2 were downregulated following white spot syndrome virus (WSSV) infection. Nonetheless, the role of CqCofilins in the context of WSSV infection remains poorly understood and warrants further investigation. In this study, the full-length cDNA sequences of the CqCofilin1 and CqCofilin2 genes were cloned and characterized. Both genes exhibit an open reading frame (ORF) of 444 bp, which encode a polypeptide of 147 amino acids, and contain an actin-depolymerizing factor (ADF) homology domain. Localization studies revealed that CqCofilin1 and CqCofilin2 were localized in both the nucleus and cytoplasm and were ubiquitously expressed across all examined crayfish tissues, with notably higher expression levels observed in nerve tissue, hemocytes, and Hpt. Gene silencing of either CqCofilin1 or CqCofilin2 led to a notable increase in WSSV internalization and a significant upregulation of viral genes like IE1 and VP28 in Hpt cells. The introduction of recombinant CqCofilin1 or CqCofilin2 proteins resulted in a significant reduction in WSSV replication. Moreover, Alphafold 3 analysis prediction and protein pull-down assay elucidated the interaction between CqCofilin1, CqCofilin2, and Cqβ-actin. These findings suggest that CqCofilins, as members of the actin depolymerization factor family, function conservatively to bind Cqβ-actin and promote cytoskeletal disassembly, a process that might hinder WSSV internalization, and which offers novel insights into host resistance mechanisms against WSSV infection.
Cofilin是细胞骨架的关键调节因子,通过促进肌动蛋白丝的解聚,协调多种关键的细胞过程,包括内吞作用、细胞迁移和粘附。基于我们先前从quadricarinatus的造血组织(Hpt)细胞中提取的差异表达基因转录组文库,Cofilin1和Cofilin2在白斑综合征病毒(WSSV)感染后表达谱下调。尽管如此,CqCofilins在WSSV感染中的作用仍然知之甚少,值得进一步研究。本研究克隆并鉴定了CqCofilin1和CqCofilin2基因的全长cDNA序列。两个基因均具有444 bp的开放阅读框(ORF),编码147个氨基酸的多肽,并含有一个肌动蛋白解聚因子(ADF)同源结构域。定位研究表明,CqCofilin1和CqCofilin2定位于细胞核和细胞质中,并在所有被检测的小龙虾组织中普遍表达,在神经组织、血细胞和Hpt中表达水平明显较高。CqCofilin1或CqCofilin2的基因沉默导致Hpt细胞中WSSV内化显著增加,病毒基因如IE1和VP28的显著上调。重组CqCofilin1或CqCofilin2蛋白的引入导致WSSV复制显著减少。此外,通过Alphafold 3分析预测和蛋白拉下实验,阐明了CqCofilin1、CqCofilin2和Cqβ-actin之间的相互作用。这些发现表明,CqCofilins作为肌动蛋白解聚因子家族的成员,保守地结合cqβ -肌动蛋白并促进细胞骨架分解,这一过程可能阻碍WSSV内化,并为宿主抵抗WSSV感染的机制提供了新的见解。
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引用次数: 0
Exosomal miR-4171-x contributes to T helper II cell immune response by regulating the Gata-3 expression in flounder (Paralichthys olivaceus) 外泌体miR-4171-x通过调节牙鲆Gata-3表达参与辅助性T细胞免疫应答
IF 3.9 1区 农林科学 Q1 FISHERIES Pub Date : 2026-10-30 Epub Date: 2025-07-05 DOI: 10.1016/j.aquaculture.2025.742930
Xueyan Shi , Lixia Jiang , Heng Chi , Roy Ambli Dalmo , Xiaoqian Tang , Jing Xing , Xiuzhen Sheng , Wenbin Zhan
Exosomes are recognized for their function as facilitators of intercellular communication and regulators of immune responses. However, the specific contributions of exosomes to the host's immune response against pathogens, especially concerning T cell immunity, remain inadequately elucidated in teleost fish. This study characterized exosomal miRNAs from the peritoneal cavity of flounder (Paralichthys olivaceus) challenged with Vibrio anguillarum. Exosomes isolated from uninfected and V. anguillarum-challenged flounder exhibited typical cup-shaped morphology and size distribution, and were further confirmed by the expression of exosomal markers (Cd9, Cd81, and Tsg101). miRNA transcriptome sequencing revealed that the expression profiles of 69 exosomal miRNAs exhibited significant alterations when comparing the infected group to the control group. Specifically, 49 miRNAs were found to be significantly upregulated, while 20 miRNAs were significant downregulation. Furthermore, GO and KEGG enrichment analyses indicated that the predicted target genes of these significantly differentially expressed miRNAs were involved in various immune processes, including signaling pathways related to T cell immune response. Functional studies identified exosomal miR-4171-x as a critical regulator, which mechanistically targets gata3—the master transcriptional regulator of Th2 cell differentiation. These findings provided novel insights into host-pathogen interactions and may inform future strategies for improving disease resistance in aquaculture.
外泌体被认为具有促进细胞间通讯和调节免疫反应的功能。然而,外泌体对宿主对抗病原体的免疫反应,特别是T细胞免疫的具体贡献,在硬骨鱼中仍未充分阐明。本研究对鳗弧菌攻毒后的比目鱼腹膜腔外泌体mirna进行了研究。从未感染和鳗源弧菌侵染的牙鲆中分离的外泌体具有典型的杯状形态和大小分布,并通过外泌体标志物(Cd9、Cd81和Tsg101)的表达进一步证实了这一点。miRNA转录组测序显示,感染组与对照组相比,69个外泌体miRNA的表达谱发生了显著变化。其中49个mirna显著上调,20个mirna显著下调。此外,GO和KEGG富集分析表明,这些显著差异表达的mirna的预测靶基因参与各种免疫过程,包括与T细胞免疫应答相关的信号通路。功能研究发现外泌体miR-4171-x是一个关键的调节因子,其机制是靶向gata3 - Th2细胞分化的主要转录调节因子。这些发现为宿主-病原体相互作用提供了新的见解,并可能为未来提高水产养殖抗病能力的策略提供信息。
{"title":"Exosomal miR-4171-x contributes to T helper II cell immune response by regulating the Gata-3 expression in flounder (Paralichthys olivaceus)","authors":"Xueyan Shi ,&nbsp;Lixia Jiang ,&nbsp;Heng Chi ,&nbsp;Roy Ambli Dalmo ,&nbsp;Xiaoqian Tang ,&nbsp;Jing Xing ,&nbsp;Xiuzhen Sheng ,&nbsp;Wenbin Zhan","doi":"10.1016/j.aquaculture.2025.742930","DOIUrl":"10.1016/j.aquaculture.2025.742930","url":null,"abstract":"<div><div>Exosomes are recognized for their function as facilitators of intercellular communication and regulators of immune responses. However, the specific contributions of exosomes to the host's immune response against pathogens, especially concerning T cell immunity, remain inadequately elucidated in teleost fish. This study characterized exosomal miRNAs from the peritoneal cavity of flounder (<em>Paralichthys olivaceus</em>) challenged with <em>Vibrio anguillarum</em>. Exosomes isolated from uninfected and <em>V. anguillarum</em>-challenged flounder exhibited typical cup-shaped morphology and size distribution, and were further confirmed by the expression of exosomal markers (Cd9, Cd81, and Tsg101). miRNA transcriptome sequencing revealed that the expression profiles of 69 exosomal miRNAs exhibited significant alterations when comparing the infected group to the control group. Specifically, 49 miRNAs were found to be significantly upregulated, while 20 miRNAs were significant downregulation. Furthermore, GO and KEGG enrichment analyses indicated that the predicted target genes of these significantly differentially expressed miRNAs were involved in various immune processes, including signaling pathways related to T cell immune response. Functional studies identified exosomal miR-4171-x as a critical regulator, which mechanistically targets <em>gata3—</em>the master transcriptional regulator of Th2 cell differentiation. These findings provided novel insights into host-pathogen interactions and may inform future strategies for improving disease resistance in aquaculture.</div></div>","PeriodicalId":8375,"journal":{"name":"Aquaculture","volume":"610 ","pages":"Article 742930"},"PeriodicalIF":3.9,"publicationDate":"2026-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144588175","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Enhanced deep OC-SORT with YOLOv8-seg for robust fry tracking and behavior analysis in aquaculture 基于YOLOv8-seg的增强深度OC-SORT用于水产养殖中鱼苗跟踪和行为分析
IF 3.9 1区 农林科学 Q1 FISHERIES Pub Date : 2026-10-30 Epub Date: 2025-06-24 DOI: 10.1016/j.aquaculture.2025.742887
Chenli Xi , Meng Cui , Jingtao Yin , Hao Gu , Ting Ouyang , Juan Feng , Lihua Zeng
Fast and accurate detection and tracking of fry (newly hatched fish) are critical for improving aquaculture efficiency and product quality. While multi-object tracking (MOT) algorithms have become effective for fry behavior analysis, they often struggle with occlusions, rapid movements, and maintaining consistent identities due to the small size and similar appearance of fry. To address these limitations, we propose an innovative method that combines detection, segmentation, and multi-object tracking. Our approach utilizes an improved YOLOv8-seg algorithm for detection and segmentation, enhanced with the STA attention mechanism, CFP centralized feature pyramid, and GSConv lightweight convolution technology. We augment Deep OC-SORT with a novel Segmentation-Enhanced Trajectory Interpolation method for multi-object tracking. This method incorporates mask-guided centroid interpolation, contour interpolation, and occlusion-aware adjustment, significantly improving tracking consistency during occlusions and rapid movements. The experimental results demonstrate that the improved YOLOv8-seg algorithm achieved detection accuracy on par with the original model while improving speed by 10 % and attained a mean average precision (mAP) of 94.3 % in fry segmentation, surpassing the original YOLOv8 algorithm by 1.8 %. The enhanced Deep OC-SORT tracking method attained 74.3 % MOTA with significantly reduced ID switches, outperforming common SOTA tracking algorithms (e.g., Deep SORT, OC-SORT, ByteTrack) and ensuring reliable individual fry tracking over time. In addition, we conducted a temperature control experiment studying the behavioral responses of Micropterus salmoides fry under different temperature conditions, providing a robust foundation for improved aquaculture management strategies. The source codes and pre-trained models are available at: https://github.com/Zeng832/Fry-Tracking.
快速准确地检测和跟踪鱼苗(新孵化的鱼)对提高养殖效率和产品质量至关重要。虽然多目标跟踪(MOT)算法在鱼苗行为分析方面已经变得非常有效,但由于鱼苗的体积小、外观相似,它们经常会遇到遮挡、快速运动和保持一致身份的问题。为了解决这些限制,我们提出了一种结合检测、分割和多目标跟踪的创新方法。我们的方法利用改进的YOLOv8-seg算法进行检测和分割,增强了STA注意机制,CFP集中特征金字塔和GSConv轻量级卷积技术。我们用一种新的分割增强轨迹插值方法增强Deep OC-SORT,用于多目标跟踪。该方法结合了掩模引导的质心插值、轮廓插值和遮挡感知调整,显著提高了遮挡和快速运动时的跟踪一致性。实验结果表明,改进后的YOLOv8-seg算法的检测精度与原模型相当,速度提高10%,在鱼片分割中平均精度(mAP)达到94.3%,比原YOLOv8算法提高1.8%。增强的Deep OC-SORT跟踪方法在显著减少ID开关的情况下获得了74.3%的MOTA,优于常见的SOTA跟踪算法(例如,Deep SORT, OC-SORT, ByteTrack),并确保可靠的单个fry随时间跟踪。此外,我们还进行了温度控制实验,研究了不同温度条件下小鱼苗的行为反应,为改进养殖管理策略提供了坚实的基础。源代码和预训练模型可在:https://github.com/Zeng832/Fry-Tracking。
{"title":"Enhanced deep OC-SORT with YOLOv8-seg for robust fry tracking and behavior analysis in aquaculture","authors":"Chenli Xi ,&nbsp;Meng Cui ,&nbsp;Jingtao Yin ,&nbsp;Hao Gu ,&nbsp;Ting Ouyang ,&nbsp;Juan Feng ,&nbsp;Lihua Zeng","doi":"10.1016/j.aquaculture.2025.742887","DOIUrl":"10.1016/j.aquaculture.2025.742887","url":null,"abstract":"<div><div>Fast and accurate detection and tracking of fry (newly hatched fish) are critical for improving aquaculture efficiency and product quality. While multi-object tracking (MOT) algorithms have become effective for fry behavior analysis, they often struggle with occlusions, rapid movements, and maintaining consistent identities due to the small size and similar appearance of fry. To address these limitations, we propose an innovative method that combines detection, segmentation, and multi-object tracking. Our approach utilizes an improved YOLOv8-seg algorithm for detection and segmentation, enhanced with the STA attention mechanism, CFP centralized feature pyramid, and GSConv lightweight convolution technology. We augment Deep OC-SORT with a novel Segmentation-Enhanced Trajectory Interpolation method for multi-object tracking. This method incorporates mask-guided centroid interpolation, contour interpolation, and occlusion-aware adjustment, significantly improving tracking consistency during occlusions and rapid movements. The experimental results demonstrate that the improved YOLOv8-seg algorithm achieved detection accuracy on par with the original model while improving speed by 10 % and attained a mean average precision (mAP) of 94.3 % in fry segmentation, surpassing the original YOLOv8 algorithm by 1.8 %. The enhanced Deep OC-SORT tracking method attained 74.3 % MOTA with significantly reduced ID switches, outperforming common SOTA tracking algorithms (e.g., Deep SORT, OC-SORT, ByteTrack) and ensuring reliable individual fry tracking over time. In addition, we conducted a temperature control experiment studying the behavioral responses of <em>Micropterus salmoides</em> fry under different temperature conditions, providing a robust foundation for improved aquaculture management strategies. The source codes and pre-trained models are available at: <span><span>https://github.com/Zeng832/Fry-Tracking</span><svg><path></path></svg></span>.</div></div>","PeriodicalId":8375,"journal":{"name":"Aquaculture","volume":"610 ","pages":"Article 742887"},"PeriodicalIF":3.9,"publicationDate":"2026-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144490323","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Histological, ultrastructural, and multi-omic integration analysis on the response mechanisms of Acipenser dabryanus to hypoxia and reoxygenation 大布里亚鲟鱼对缺氧和再氧反应机制的组织学、超微结构和多组学整合分析
IF 3.9 1区 农林科学 Q1 FISHERIES Pub Date : 2026-10-30 Epub Date: 2025-06-24 DOI: 10.1016/j.aquaculture.2025.742890
Yeyu Chen , Xiaoyun Wu , Pengcheng Li , Jiansheng Lai , Luyun Ni , Zhao Liu , Mingjiang Song , Feiyang Li , Quan Gong
Hypoxia is a global issue affecting aquaculture because of increasingly serious environmental pollution. Revealing the changes in the physiological function of fish and the molecular mechanisms after hypoxic stress is key to avoiding damage from hypoxia. In this study, we systematically investigated the effects of hypoxia and reoxygenation on Acipenser dabryanus using histological, ultrastructural, biochemical, and multi-omic analyses. Histological studies showed that the skin and muscle were damaged to different degrees after hypoxia and that the tissue structure returned to normal after reoxygenation. Scanning and transmission electron microscopy revealed that the morphology of mitochondria-rich and pavement cells in the gills of the hypoxic group was significantly altered and damaged. The activities of serum superoxide dismutase and liver lactate dehydrogenase increased after hypoxia. Transcriptome sequencing of the liver and gills identified numerous differentially expressed genes (DEGs) between the hypoxia and control groups, whereas the number of DEGs in the reoxygenation versus control group was significantly reduced. DEGs enriched in cytokine-cytokine receptor interactions, the PI3K-Akt signalling pathway, the HIF-1 signalling pathway, and glycolysis/gluconeogenesis may play important roles in the response to hypoxic stress. Differentially expressed metabolites and proteins screened by metabolomics and proteomics confirmed the transcriptomic results. The combined analysis of multi-omics showed that glycolysis/gluconeogenesis metabolism was upregulated after hypoxia to increase glucose production to obtain more energy under hypoxic environment. Muti-omics analysis also revealed the enhancement of glycerophospholipid metabolism which might be a self-protection mechanism to maintain the stability of the cell membrane against hypoxic stress. This study provided meaningful insights into the molecular mechanisms underlying the effects of hypoxic stress and reoxygenation in fish.
由于环境污染日益严重,缺氧是影响水产养殖的全球性问题。揭示缺氧胁迫后鱼类生理功能的变化及其分子机制是避免缺氧损伤的关键。本研究采用组织学、超微结构、生化和多组学分析等方法,系统地研究了缺氧和再氧合对大布氏鲟的影响。组织学研究表明,缺氧后皮肤和肌肉均有不同程度的损伤,复氧后组织结构恢复正常。扫描电镜和透射电镜显示,缺氧组鱼鳃富线粒体细胞和铺装细胞形态发生明显改变和损伤。缺氧后血清超氧化物歧化酶和肝脏乳酸脱氢酶活性升高。肝脏和鳃的转录组测序在缺氧组和对照组之间发现了许多差异表达基因(deg),而再氧组的deg数量与对照组相比显着减少。富含细胞因子-细胞因子受体相互作用、PI3K-Akt信号通路、HIF-1信号通路和糖酵解/糖异生的DEGs可能在低氧应激反应中发挥重要作用。代谢组学和蛋白质组学筛选的差异表达代谢物和蛋白质证实了转录组学的结果。多组学联合分析表明,在缺氧环境下,糖酵解/糖异生代谢在缺氧后上调,以增加葡萄糖产量以获得更多能量。多组学分析还揭示了甘油磷脂代谢的增强,这可能是一种维持细胞膜抗缺氧应激稳定性的自我保护机制。该研究为鱼类缺氧应激和再氧化作用的分子机制提供了有意义的见解。
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引用次数: 0
Molecular mechanisms of cold stress-induced energy stress, cholesterol metabolic disorders, and apoptosis in Pangasianodon hypophthalmus 冷应激诱导的能量应激、胆固醇代谢紊乱和低眼棘鱼细胞凋亡的分子机制
IF 3.9 1区 农林科学 Q1 FISHERIES Pub Date : 2026-10-30 Epub Date: 2025-06-24 DOI: 10.1016/j.aquaculture.2025.742886
Dongjie Wang , Min Li , Min Liao , Yao Tian , Qing Wu , Shaolin Xie , Wei Luo , Jixing Zou , Jun Shi , Zongjun Du
Energy metabolism, cholesterol metabolism, and apoptosis are key physiological responses to cold stress in fish. However, the molecular mechanisms underlying these processes and their interactions remain insufficiently understood, particularly regarding their molecular interactions. In this study, we integrated physiological, histological, metabolomic, and transcriptomic approaches to reveal the molecular responses of the cold-sensitive Pangasianodon hypophthalmus (13.52 ± 1.54 g) to programmed cooling (25 °C, 20 °C, 15 °C). Our results demonstrate that cold stress induces energy stress, cholesterol metabolism disorder, and apoptosis in P. hypophthalmus. Specifically, it manifests as increased serum antioxidant activity, decreased cholesterol levels, tissue damage in the gills, liver, and muscle accompanied by elevated apoptotic signals, ultrastructural damage to hepatic mitochondria, and a significant reduction in mitochondrial membrane potential. Integrated metabolomic and transcriptomic analysis identified AMPK, PPAR, PI3K/AKT/mTOR, cholesterol metabolism, primary bile acid biosynthesis, bile secretion, and intrinsic mitochondrial apoptosis pathways as key pathways of energy metabolism, cholesterol metabolism, and apoptosis under cold stress. Inhibition of AMPK and PPAR signaling pathways, along with disrupted cholesterol metabolism, represents a major factor contributing to cold stress intolerance in P. hypophthalmus. Inhibition of cholesterol synthesis during cold stress, likely through suppression of the hmgcr, was central to cholesterol metabolic disturbances. Under cold stress, concurrent inhibition of PI3K/AKT/mTOR, cholesterol metabolism, bile acid biosynthesis, and bile secretion pathways reshaped energy metabolism to accommodate increased energy demands. When the AMPK pathway is inhibited, p53 may also function to suppress biosynthetic processes, thereby maintaining a specific metabolic state under cold stress. The results of qPCR and Western blot further support the reliability of our conclusions. In summary, these findings clarify the regulatory mechanisms and interactions among energy metabolism, cholesterol metabolism, and apoptosis in P. hypophthalmus under cold stress, providing a basis for enhancing fish resilience to cold stress challenges.
能量代谢、胆固醇代谢和细胞凋亡是鱼类对冷胁迫的主要生理反应。然而,这些过程及其相互作用的分子机制仍然没有得到充分的了解,特别是关于它们的分子相互作用。在这项研究中,我们综合了生理学、组织学、代谢组学和转录组学的方法,揭示了对冷敏感的Pangasianodon hypoophthalmus(13.52±1.54 g)对程序冷却(25°C、20°C、15°C)的分子反应。我们的研究结果表明,冷应激诱导能量应激、胆固醇代谢紊乱和细胞凋亡。具体而言,它表现为血清抗氧化活性增加,胆固醇水平降低,鳃、肝脏和肌肉组织损伤,伴有凋亡信号升高,肝线粒体超微结构损伤,线粒体膜电位显著降低。综合代谢组学和转录组学分析发现,AMPK、PPAR、PI3K/AKT/mTOR、胆固醇代谢、原发性胆汁酸生物合成、胆汁分泌和线粒体固有凋亡途径是冷胁迫下能量代谢、胆固醇代谢和细胞凋亡的关键途径。AMPK和PPAR信号通路的抑制,以及胆固醇代谢的破坏,是导致低眼假体冷应激不耐受的一个主要因素。低温胁迫下胆固醇合成的抑制,可能是通过抑制hmgcr,是胆固醇代谢紊乱的核心。在冷胁迫下,PI3K/AKT/mTOR、胆固醇代谢、胆汁酸生物合成和胆汁分泌途径的同时抑制重塑了能量代谢,以适应增加的能量需求。当AMPK通路受到抑制时,p53也可能发挥抑制生物合成过程的作用,从而在冷胁迫下维持特定的代谢状态。qPCR和Western blot的结果进一步支持了我们结论的可靠性。综上所述,这些研究结果阐明了冷应激下低眼比目鱼能量代谢、胆固醇代谢和细胞凋亡的调控机制及其相互作用,为增强鱼对冷应激的适应能力提供了依据。
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引用次数: 0
Enhanced T-cell activation and effector functions contribute to disease resistance in Streptococcus agalactiae-resistant tilapia 增强的t细胞激活和效应功能有助于无乳链球菌抗性罗非鱼的疾病抗性
IF 3.9 1区 农林科学 Q1 FISHERIES Pub Date : 2026-10-30 Epub Date: 2025-06-27 DOI: 10.1016/j.aquaculture.2025.742903
Ming Geng , Jingfeng Ding , Jun Xiao , Liting Chen , Jiansong Zhang , Kang Li , Jie Cheng , Yi Cao , Jialong Yang , Xiumei Wei
To address the considerable challenges posed by frequent Streptococcus agalactiae infections in tilapia aquaculture, we previously developed a strain of tilapia with enhanced resistance to this pathogen. Understanding the immune mechanisms behind this resistance is essential for advancing selective breeding strategies. This study concentrates on T-cell activation and effector function to explore the reasons for the more robust immunity in S. agalactiae-resistant tilapia. Through RNA-seq and immunological assays, we demonstrated that resistant tilapia possessed a higher proportion of T cells and enhanced T-cell effector functions compared to susceptible tilapia. Upon in vitro stimulation with anti-tilapia CD3ε plus CD28 monoclonal antibodies (mAbs), or in vivo infection with S. agalactiae, spleen leukocytes from resistant tilapia showed significantly enhanced degrees of Erk1/2 and NF-κB p65 phosphorylation, which are classical signaling pathway of T-cell activation. Once activated, spleen lymphocytes from resistant tilapia expressed higher levels of inflammatory cytokines, such as TNF-α, IL-2, as well as cytotoxic molecule perforin A. Moreover, CD4–1+ T cells in the resistant tilapia produced greater amounts of interferon (IFN)-γ, suggesting their superior T-cell effector functions. These findings collectively illustrate how enhanced T-cell activation and effector responses facilitate the optimized immune defenses of resistant tilapia. By shedding light on these mechanisms, our findings provide a valuable foundation for refining breeding programs aimed at increasing disease resistance in aquaculture.
为了解决罗非鱼养殖中频繁出现的无乳链球菌感染所带来的巨大挑战,我们以前开发了一种对这种病原体具有增强抵抗力的罗非鱼菌株。了解这种抗性背后的免疫机制对于推进选择性育种策略至关重要。本研究主要从t细胞活化和效应功能方面探讨耐S.无乳乳酸罗非鱼免疫能力增强的原因。通过RNA-seq和免疫学分析,我们证明了抗性罗非鱼比易感罗非鱼具有更高比例的T细胞和增强的T细胞效应功能。体外抗罗非鱼CD3ε + CD28单克隆抗体(mab)刺激或体内无乳链球菌感染后,耐药罗非鱼脾脏白细胞Erk1/2和NF-κB p65磷酸化程度显著增强,这是t细胞活化的经典信号通路。一旦被激活,耐药罗非鱼的脾淋巴细胞表达更高水平的炎症细胞因子,如TNF-α、IL-2和细胞毒性分子穿孔素a。此外,耐药罗非鱼的CD4-1 + T细胞产生更多的干扰素(IFN)-γ,表明它们具有优越的T细胞效应功能。这些发现共同说明了增强的t细胞激活和效应反应如何促进了耐药罗非鱼的优化免疫防御。通过阐明这些机制,我们的发现为改进养殖计划提供了宝贵的基础,旨在提高水产养殖的抗病能力。
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引用次数: 0
Sideways exit during crowding utilises natural salmon behaviour for easier transfer 在拥挤的时候,横向出口利用了鲑鱼的自然行为,更容易转移
IF 3.9 1区 农林科学 Q1 FISHERIES Pub Date : 2026-10-30 Epub Date: 2025-07-08 DOI: 10.1016/j.aquaculture.2025.742939
F. Warren-Myers , O. Folkedal , V. Nola , F. Oppedal
Efficient crowding of fish in sea cages for the purpose of transferring them to fasting, treatments or slaughter, is critical for insuring fish are moved quickly with minimal stress. With the development of larger offshore cages holding millions of fish and/or submerged cage salmon aquaculture, extraction of fish will potentially be more difficult. Particularly if farmers seek to remove portions of the biomass at a time without lifting cages to the surface. Using salmon innate swimming behaviours may aid to develop innovative, simple, welfare-friendly removal methods. Here we investigate whether the direction of crowding in a submerged cage influences the exit behaviour of salmon when extracted at depth for the purpose of pumping to a well-boat or otherwise. Using replicates of 46 large (∼4.3 kg) or 128 small (∼1.3 kg) Atlantic salmon and a prototype submerged cube cage (27 m3) fitted with a movable wall, we test to see if crowding salmon towards a 50 cm diameter circular opening in either the top, side, or bottom of the cage influences fish exit rate. Our results show that when crowding fish by incrementally reducing the cage volume by a factor of 12 over 25 mins, for both fish sizes ∼80 % of fish exited the cage via sideways crowding, whereas only 20 to 50 % exited by top up or bottom down crowding directions. Furthermore, maximum relative fish densities reached during crowding tests were almost halved for sidewards crowding (37–43 kg m−3) compared to downwards or upwards crowding directions (59–73 kg m−3). We conclude that fish visualization of the exit hole and their natural circular swimming behaviour favoured sideways extraction. Hence, with a sea cage design that enables sideways crowding, it may be possible to extract fish quickly with minimal stress, and without needing to raise cages to the surface.
为了将鱼转移到禁食、治疗或屠宰的目的,将鱼有效地挤在海网箱中,对于确保以最小的压力快速移动鱼是至关重要的。随着可容纳数百万条鱼的大型近海网箱和/或水下网箱鲑鱼水产养殖的发展,鱼类的提取可能会变得更加困难。特别是如果农民试图一次移除部分生物量,而不将笼子抬起到地面。利用鲑鱼天生的游泳行为可能有助于开发创新,简单,福利友好的清除方法。在这里,我们研究了在水下笼中拥挤的方向是否会影响鲑鱼在深度抽取时的退出行为,以便泵送到井船或其他方式。我们使用46条大(~ 4.3 kg)或128条小(~ 1.3 kg)大西洋鲑鱼和一个装有可移动壁的原型水下立方体网箱(27 m3)进行重复试验,以观察将鲑鱼挤向网箱顶部、侧面或底部直径50厘米的圆形开口是否会影响鱼的退出率。我们的研究结果表明,当通过在25分钟内逐步减少笼子体积的12倍来拥挤鱼时,对于两种鱼的大小,约80%的鱼通过侧向拥挤离开笼子,而只有20%至50%的鱼通过自上而下或自下而上的拥挤方向离开笼子。此外,在拥挤试验期间,与向下或向上拥挤方向(59-73 kg m - 3)相比,向侧拥挤(37-43 kg m - 3)达到的最大相对鱼密度几乎减半。我们得出的结论是,鱼类对出口孔的可视化和它们自然的圆形游泳行为有利于侧向提取。因此,采用能够向两侧拥挤的海网箱设计,就有可能以最小的压力快速捕获鱼类,而无需将网箱提升到水面。
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引用次数: 0
Study of consumer perceptions of sustainable fishery products 消费者对可持续渔业产品的认知研究
IF 3.9 1区 农林科学 Q1 FISHERIES Pub Date : 2026-10-30 Epub Date: 2025-07-05 DOI: 10.1016/j.aquaculture.2025.742926
G. Cantos, C. Fuentes, I. Fernández-Segovia, A. Fuentes
Consumers' concern about the environmental impact has triggered the need for available information on aspects related to the sustainability of the food products. Companies show consumers their environmental commitment and sustainability through certifications and sustainability labels. The present study aims to: (i) evaluate the presence of sustainability labels on the aquaculture and wild-caught fish products commercialised in Spain; (ii) study consumers' knowledge of sustainability seals; (iii) analyse the main aspects that affect the purchase decisions of sustainable food products. The supply of fish and fishery products was determined by market research. A consumer opinion survey was performed to assess labelling relevance, knowledge about sustainability labels and purchasing preferences. In Spain, sustainability labels appear on more than one third of fish products, with large differences found between different retailers. More than half of the products sold in German discount stores featured some sustainability label, a figure three times higher than the rate of products found in the Spanish supermarkets. The consumer survey showed that most Spanish consumers do not regularly check labelling information related to the environment and animal welfare, and they are largely unaware of the meaning of sustainability labels. Nonetheless, the conjoint analysis showed that the presence of sustainability seals enhances fish product purchases, especially for aquaculture products. These results demonstrate that marine sustainability seals and certifications can be used by the fish industry to increase purchase intention and to revalorise their products. However, informing consumers about the meaning and importance of these certifications is still necessary.
消费者对环境影响的关注引发了对食品可持续性相关方面现有信息的需求。公司通过认证和可持续性标签向消费者展示他们对环境的承诺和可持续性。本研究旨在:(i)评估在西班牙商业化的水产养殖和野生捕捞鱼产品上是否存在可持续性标签;(ii)研究消费者对可持续印章的认知;(iii)分析影响可持续食品购买决策的主要因素。鱼和渔产品的供应是由市场调查决定的。一项消费者意见调查进行了评估标签的相关性,关于可持续发展的标签和购买偏好的知识。在西班牙,可持续性标签出现在超过三分之一的鱼产品上,不同零售商之间的差异很大。在德国折扣店销售的产品中,有一半以上带有可持续发展标签,这一比例是西班牙超市产品的三倍。消费者调查显示,大多数西班牙消费者不会定期查看与环境和动物福利相关的标签信息,他们在很大程度上不知道可持续发展标签的含义。尽管如此,联合分析表明,可持续性印章的存在增加了鱼类产品的购买,特别是对水产养殖产品。这些结果表明,海洋可持续发展印章和认证可以被渔业用来增加购买意愿和重新评估他们的产品。然而,告知消费者这些认证的意义和重要性仍然是必要的。
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引用次数: 0
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